Citrus Sinensis ID: 022050
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | 2.2.26 [Sep-21-2011] | |||||||
| O22216 | 462 | Glycerol-3-phosphate dehy | yes | no | 0.960 | 0.629 | 0.824 | 1e-145 | |
| Q8S2G5 | 467 | Probable glycerol-3-phosp | yes | no | 0.930 | 0.603 | 0.844 | 1e-144 | |
| Q8S0G4 | 456 | Probable glycerol-3-phosp | no | no | 0.957 | 0.635 | 0.831 | 1e-143 | |
| Q65X70 | 465 | Probable glycerol-3-phosp | no | no | 0.900 | 0.587 | 0.846 | 1e-138 | |
| Q3V7H1 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.518 | 0.439 | 0.345 | 2e-10 | |
| P61738 | 331 | Glycerol-3-phosphate dehy | yes | no | 0.458 | 0.419 | 0.306 | 5e-10 | |
| B0V862 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.452 | 0.383 | 0.315 | 6e-10 | |
| A3M6Y6 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.452 | 0.383 | 0.315 | 6e-10 | |
| B2HUU0 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.452 | 0.383 | 0.315 | 6e-10 | |
| B7I2M0 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.452 | 0.383 | 0.315 | 6e-10 |
| >sp|O22216|GPDHC_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic OS=Arabidopsis thaliana GN=GPDHC1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 514 bits (1323), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/291 (82%), Positives = 265/291 (91%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH +LEE+LDE RRL+GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLV 301
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAG + L
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALT 299
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Involved in cell redox homeostasis. Required for maintaining a steady state cellular NADH/NAD(+) ratio through a mitochondrial glycerol-3-phosphate redox shuttle. May function with the mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase SDP6 to shuttle reducing equivalents into the mitochondria for respiration. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8 |
| >sp|Q8S2G5|GPDH2_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0801600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 512 bits (1318), Expect = e-144, Method: Compositional matrix adjust.
Identities = 239/283 (84%), Positives = 266/283 (93%), Gaps = 1/283 (0%)
Query: 20 HTNG-SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW 78
H NG ++EE+LDELRRL+GKA+GDPLRIVGVGAGAWGSVF A++QD+YG+LRDKV +RIW
Sbjct: 16 HGNGATVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIW 75
Query: 79 RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCL 138
RRPGR+VDRATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTL+ADEIL+DGFCL
Sbjct: 76 RRPGRAVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCL 135
Query: 139 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198
NMIDTPLCPLKVVTNLQEAVWDADIVINGLPST+T+EVF EI RYWKERIT P+I+SLAK
Sbjct: 136 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAK 195
Query: 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
G+EA L+ +PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRK
Sbjct: 196 GIEASLDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRK 255
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLV 301
PLAKFLR+PHF VWDN DL+THEVMGGLKNVYAIGAG + L
Sbjct: 256 PLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALT 298
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/291 (83%), Positives = 267/291 (91%), Gaps = 1/291 (0%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
S+ NG ++ NG+ EERLDELRRL+GK++GD L+IVG+GAGAWGSVF A+LQD+YG R
Sbjct: 4 SVHVNGSVNGGNGT-EERLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFR 62
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
+KV IRIWRR GRSVDR TAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 63 EKVQIRIWRRAGRSVDRTTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADE 122
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
IL+DGFCLNMIDTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERI+V
Sbjct: 123 ILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISV 182
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
PVIISLAKG+EA L+ +PRIITPTQMI+ ATGVP ENILYLGGPNIASEIYNKEYANARI
Sbjct: 183 PVIISLAKGIEASLDPIPRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARI 242
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLV 301
CG+ KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAG + L
Sbjct: 243 CGSNKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALT 293
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q65X70|GPDH3_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic OS=Oryza sativa subsp. japonica GN=Os05g0495700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 492 bits (1266), Expect = e-138, Method: Compositional matrix adjust.
Identities = 231/273 (84%), Positives = 252/273 (92%)
Query: 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87
+LDELRR MGKA+GD LRIVGVG GAWGS F A+LQD+YG RDK +R+WRRPGR+VDR
Sbjct: 22 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 81
Query: 88 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADEIL+DGFCLNM+DTPLCP
Sbjct: 82 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 141
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
LKVVTNLQEAVWDADIVINGLPSTET+EVF EI RYWKERI PVIISLAKG+EA ++ V
Sbjct: 142 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 201
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRKPLAKFLR+P
Sbjct: 202 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 261
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFL 300
HF VWDN DL+THEVMGGLKN+YAIGAG + L
Sbjct: 262 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAAL 294
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3V7H1|GPDA_ACIAD Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter sp. (strain ADP1) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 14/171 (8%)
Query: 128 ADEILKDGFCLNMI-DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
ADEI + F + D L P LK V++L+ AV D DI+ +PS +EV ++IS Y
Sbjct: 56 ADEINQTHFNQRYLPDFNLEPELKAVSDLELAVRDRDIIFVAIPSHSFREVVKQISPY-- 113
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
IT I+SL KG+EA + I ++ GV L GPN+A EI
Sbjct: 114 --ITAQAIVSLTKGIEANTFSFMSDIIREELPEVPYGV-------LSGPNLAKEIVAGMP 164
Query: 246 ANARICG-AEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
+ I +E R + L F V+ + D+ E+ G LKN+YAI G
Sbjct: 165 SGTVIASDSELVRYAVQHALHSALFRVFGSDDVHGVELGGALKNIYAIAMG 215
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Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|P61738|GPDA_CORDI Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV-PVIISLAKGVEAELEA 206
L T +A+ DAD+V+ +PS + E W I +++SLAKG+E E
Sbjct: 58 LTATTQPTQALCDADVVVLAVPSQTLRGNLAE----WCADIPQDALLLSLAKGIEKET-- 111
Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
+ +++I TG + + L GPN+A EI ++ A I C EK + + L
Sbjct: 112 ---FLRMSEVIAEVTGAQPDKVAVLSGPNLAREIAEEQPAATVIACTNEKNAQRIQHALA 168
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
P+F + N D++ E+ G KNV A+ G
Sbjct: 169 APYFRPYTNTDVIGCEIGGACKNVIALACG 198
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Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) (taxid: 257309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B0V862|GPDA_ACIBY Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain AYE) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L+ V++L++AV D DI++ +PS ++V ++I+ Y IT ++SL KGVEA+ +
Sbjct: 78 LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
I ++ GV L GPN+A EI + I +E R + L
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
F V+ + D+ E+ G LKN+YA+ G
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMG 215
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Acinetobacter baumannii (strain AYE) (taxid: 509173) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|A3M6Y6|GPDA_ACIBT Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gpsA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L+ V++L++AV D DI++ +PS ++V ++I+ Y IT ++SL KGVEA+ +
Sbjct: 78 LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
I ++ GV L GPN+A EI + I +E R + L
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
F V+ + D+ E+ G LKN+YA+ G
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMG 215
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Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) (taxid: 400667) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B2HUU0|GPDA_ACIBC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain ACICU) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L+ V++L++AV D DI++ +PS ++V ++I+ Y IT ++SL KGVEA+ +
Sbjct: 78 LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
I ++ GV L GPN+A EI + I +E R + L
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
F V+ + D+ E+ G LKN+YA+ G
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMG 215
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Acinetobacter baumannii (strain ACICU) (taxid: 405416) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B7I2M0|GPDA_ACIB5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter baumannii (strain AB0057) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L+ V++L++AV D DI++ +PS ++V ++I+ Y IT ++SL KGVEA+ +
Sbjct: 78 LRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPY----ITAQAVVSLTKGVEAKTFSF 133
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRR 266
I ++ GV L GPN+A EI + I +E R + L
Sbjct: 134 MSDIIREELPEVPYGV-------LSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHS 186
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
F V+ + D+ E+ G LKN+YA+ G
Sbjct: 187 ALFRVFGSDDVHGVELGGALKNIYAVAMG 215
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Acinetobacter baumannii (strain AB0057) (taxid: 480119) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| TAIR|locus:2062734 | 462 | GPDHC1 [Arabidopsis thaliana ( | 0.947 | 0.621 | 0.801 | 2.1e-125 | |
| TAIR|locus:2077387 | 466 | AT3G07690 [Arabidopsis thalian | 0.854 | 0.555 | 0.841 | 1.1e-119 | |
| UNIPROTKB|F1P0W8 | 380 | GPD1L "Uncharacterized protein | 0.435 | 0.347 | 0.326 | 6.2e-09 | |
| MGI|MGI:1289257 | 351 | Gpd1l "glycerol-3-phosphate de | 0.438 | 0.378 | 0.315 | 7.8e-09 | |
| UNIPROTKB|P95113 | 334 | gpsA "Glycerol-3-phosphate deh | 0.528 | 0.479 | 0.274 | 1.2e-08 | |
| UNIPROTKB|I3LLU0 | 351 | GPD1L "Uncharacterized protein | 0.435 | 0.376 | 0.32 | 1.7e-08 | |
| RGD|1560123 | 351 | Gpd1l "glycerol-3-phosphate de | 0.435 | 0.376 | 0.32 | 1.8e-08 | |
| UNIPROTKB|Q8N335 | 351 | GPD1L "Glycerol-3-phosphate de | 0.435 | 0.376 | 0.313 | 2.4e-08 | |
| UNIPROTKB|A6QQR7 | 351 | GPD1L "GPD1L protein" [Bos tau | 0.435 | 0.376 | 0.32 | 3.1e-08 | |
| UNIPROTKB|J9NS24 | 434 | GPD1L "Uncharacterized protein | 0.435 | 0.304 | 0.313 | 1.2e-07 |
| TAIR|locus:2062734 GPDHC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 230/287 (80%), Positives = 254/287 (88%)
Query: 11 SLSSNGLIHHTNGSXXXXXXXXXXXMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH + +GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTI 297
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAG +
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMV 295
|
|
| TAIR|locus:2077387 AT3G07690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.1e-119, P = 1.1e-119
Identities = 218/259 (84%), Positives = 240/259 (92%)
Query: 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFE 95
MGKA+ DPLRIVGVGAGAWGSVF AMLQ++YG R KV +RIWRR GR++D+ATAEHLFE
Sbjct: 27 MGKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRAIDKATAEHLFE 86
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
VINSRE++LRRLIRRCAYLKYVEARLGDR L+ADEILKDGFCLNMI+TPLCPLKVVTNLQ
Sbjct: 87 VINSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQ 146
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
EAVWDADIVINGLPSTET +VF EIS+YWKER+ PVIISLAKGVEAE E PRI+TPTQ
Sbjct: 147 EAVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQ 206
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275
MI+RATG+P+ENILYLGGPNIASE+YNKEYANARICG+EKWRKPL KFLR+ HF VWDN
Sbjct: 207 MIHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNS 266
Query: 276 DLVTHEVMGGLKNVYAIGA 294
DL+THEVMGGLKNVYAIGA
Sbjct: 267 DLITHEVMGGLKNVYAIGA 285
|
|
| UNIPROTKB|F1P0W8 GPD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P +V +EI+ R K+ + I+L KG++ E +
Sbjct: 107 VPNLNEAVQDADLLVFVVPHQFIHKVCDEITGRVPKKALG----ITLIKGIDEGPEGLKL 162
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ +++ I G++ L + L+ P
Sbjct: 163 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKILENGLLFKELLQTP 215
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 216 NFRITVVDDADTV--ELCGALKNIVAVGAG 243
|
|
| MGI|MGI:1289257 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 47/149 (31%), Positives = 81/149 (54%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V NL EAV DAD+++ +P ++ +EI+ E+ + I+L KG++ + + I
Sbjct: 78 VPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKA---LGITLIKGIDEGPDGLKLI 134
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRPH 268
+ +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P+
Sbjct: 135 ---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVMQNGLLFKELLQTPN 187
Query: 269 F--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 188 FRITVVDDADTV--ELCGALKNIVAVGAG 214
|
|
| UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 47/171 (27%), Positives = 81/171 (47%)
Query: 128 ADEILKDGFCLNMIDTPLCP--LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
AD+I + + + L P + + +EA+ A V+ G+P+ + E +
Sbjct: 41 ADQINTTRYNPDYLPGALLPPSIHATADAEEALGGASTVLLGVPAQTMRANLERWAPLLP 100
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
E T ++SLAKG+E L + R+ +Q+I TG + + GPN+ASEI +
Sbjct: 101 EGAT---LVSLAKGIE--LGTLMRM---SQVIISVTGAEPPQVAVISGPNLASEIAECQP 152
Query: 246 ANARICGAEKWRK-PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
A + ++ R L + L +F + N D+V E+ G KN+ A+ G
Sbjct: 153 AATVVACSDSGRAVALQRALNSGYFRPYTNADVVGTEIGGACKNIIALACG 203
|
|
| UNIPROTKB|I3LLU0 GPD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 136 (52.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 48/150 (32%), Positives = 79/150 (52%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 VANLGEAVKDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ ++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAG 214
|
|
| RGD|1560123 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 48/150 (32%), Positives = 82/150 (54%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P ++ +EI+ R K+ + I+L KG++ + +
Sbjct: 78 VPNLGEAVQDADLLVFVIPHQFIHKICDEITGRVPKKAVG----ITLIKGIDEGPDGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVLQNGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAG 214
|
|
| UNIPROTKB|Q8N335 GPD1L "Glycerol-3-phosphate dehydrogenase 1-like protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 139 (54.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 47/150 (31%), Positives = 81/150 (54%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
++NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 MSNLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKKALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ +++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAG 214
|
|
| UNIPROTKB|A6QQR7 GPD1L "GPD1L protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 48/150 (32%), Positives = 79/150 (52%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 VANLSEAVQDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ ++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKIMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAG 214
|
|
| UNIPROTKB|J9NS24 GPD1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 47/150 (31%), Positives = 80/150 (53%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P + +E++ R K+ + I+L KG++ E +
Sbjct: 161 VPNLGEAVKDADLLVFVIPHQFIHRICDELTGRVPKDALG----ITLIKGIDEGPEGLKL 216
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ + ++ G NIASE+ +++ I G++ L + L+ P
Sbjct: 217 I---SDIIREKMGIDVSVLM---GANIASEVAAEKFCETTI-GSKIMENGLLFKELLQTP 269
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAG 295
+F TV D+ D V E+ G LKN+ A+GAG
Sbjct: 270 NFRITVVDDADTV--ELCGALKNIVAVGAG 297
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8S2G5 | GPDH2_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8445 | 0.9306 | 0.6038 | yes | no |
| O22216 | GPDHC_ARATH | 1, ., 1, ., 1, ., 8 | 0.8247 | 0.9603 | 0.6298 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 1.1.1.94 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 303 | |||
| COG0240 | 329 | COG0240, GpsA, Glycerol-3-phosphate dehydrogenase | 2e-17 | |
| PRK00094 | 325 | PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp | 2e-16 | |
| PRK12439 | 341 | PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p | 4e-13 | |
| PTZ00345 | 365 | PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge | 1e-10 | |
| TIGR03376 | 342 | TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh | 2e-10 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 7e-09 | |
| PRK14619 | 308 | PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p | 7e-06 | |
| PRK14618 | 328 | PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p | 8e-05 | |
| pfam07479 | 145 | pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol- | 3e-04 |
| >gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 70/260 (26%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSRE 101
++I +GAG+WG+ +L + G+ +V R+W R E + E+ +RE
Sbjct: 1 MMKIAVIGAGSWGTALAKVLARN-GH---EV--RLWGRDE---------EIVAEINETRE 45
Query: 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA 161
+ YL + L LK T+L EA+ A
Sbjct: 46 NP--------KYLPGIL-------------LPPN------------LKATTDLAEALDGA 72
Query: 162 DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT 221
DI++ +PS +EV ++ + +I+S KG+E E +++I
Sbjct: 73 DIIVIAVPSQALREVLRQLKPLLLKD---AIIVSATKGLEPE-----TGRLLSEIIEEEL 124
Query: 222 GVPIENILYLGGPNIASEIYNKEYANARICGA------EKWRKPLAKFLRRPHFTVWDNG 275
P I L GP+ A E+ A ++ + + P+F V+ +
Sbjct: 125 --PDNPIAVLSGPSFAKEV-----AQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTST 177
Query: 276 DLVTHEVMGGLKNVYAIGAG 295
D++ E+ G LKNV AI AG
Sbjct: 178 DVIGVEIGGALKNVIAIAAG 197
|
Length = 329 |
| >gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 2e-16
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 79/259 (30%)
Query: 49 VGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108
+GAG+WG+ +L + G+ V +W R E E+ RE+
Sbjct: 7 LGAGSWGTALAIVLARN-GH---DV--TLWAR--------DPEQAAEINADRENP----- 47
Query: 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168
YL L D L+ T+L EA+ DAD+++ +
Sbjct: 48 ---RYLP-------------GIKLPDN------------LRATTDLAEALADADLILVAV 79
Query: 169 PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228
PS +EV +++ I+ KG+E ++++ I
Sbjct: 80 PSQALREVLKQLKPLLPPD---APIVWATKGIEPGTGK-----LLSEVLEEELPDL-API 130
Query: 229 LYLGGPNIASEI------------YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276
L GP+ A E+ ++E A + + P+F V+ N D
Sbjct: 131 AVLSGPSFAKEVARGLPTAVVIASTDEELAER-----------VQELFHSPYFRVYTNTD 179
Query: 277 LVTHEVMGGLKNVYAIGAG 295
++ E+ G LKNV AI AG
Sbjct: 180 VIGVELGGALKNVIAIAAG 198
|
Length = 325 |
| >gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-13
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 142 DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
D L L+ T+ EA AD+V+ G+PS + V E+++ R VPV+ SL KG+
Sbjct: 58 DVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKEL--RPWVPVV-SLVKGL 114
Query: 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--K 258
E + +Q+I +P L GPNIA E+ YA A +
Sbjct: 115 EQGTN-----MRMSQIIEEV--LPGHPAGILAGPNIAREVAEG-YAAAAVLAMPDQHLAT 166
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFL 300
L+ R F V+ D+V E+ G LKNV+AI G Y L
Sbjct: 167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSL 208
|
Length = 341 |
| >gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-10
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 65/265 (24%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWRRPGRSVDRATAEHLFEVINS 99
PL++ +G+G WGS + ++ R+ + +R+W + E L ++IN+
Sbjct: 11 PLKVSVIGSGNWGSAISKVV--GENTQRNYIFHNEVRMWVLE----EIVEGEKLSDIINT 64
Query: 100 R-EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV 158
+ E+V YL ++ D I+ V++L+EAV
Sbjct: 65 KHENV--------KYLPGIKL--------PDNIV-----------------AVSDLKEAV 91
Query: 159 WDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVPRIITPTQ 215
DAD++I +P + V +I KE + ISL KG+ E P + +
Sbjct: 92 EDADLLIFVIPHQFLESVLSQI----KENNNLKKHARAISLTKGIIVE-NGKPVLCSDV- 145
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKPLAKFLRRPHFT 270
I G+P L G N+A+++ +E++ A I +K W++ RP+F
Sbjct: 146 -IEEELGIPC---CALSGANVANDVAREEFSEATIGCEDKDDALIWQR----LFDRPYFK 197
Query: 271 VWDNGDLVTHEVMGGLKNVYAIGAG 295
+ D++ EV G LKN+ A+ AG
Sbjct: 198 INCVPDVIGVEVCGALKNIIALAAG 222
|
Length = 365 |
| >gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 146 CPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203
P +V L EA ADI++ +P + + +++ + K IS KG+E
Sbjct: 66 LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNA---RAISCIKGLEVS 122
Query: 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-----CGAEKWRK 258
+ V + +I G+P L G N+A+E+ ++++ + + +
Sbjct: 123 KDGV---KLLSDIIEEELGIPCG---VLSGANLANEVAKEKFSETTVGYRDPADFDVDAR 176
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
L RP+F V D+ E+ G LKNV AI AG
Sbjct: 177 VLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAG 213
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-09
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 146 CPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205
L+ T+L+EA+ ADI++ +PS +EV +++ +++SL KG+E
Sbjct: 55 DNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPG---AILVSLTKGIEPGTL 111
Query: 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEI 240
+ I ++ PI I L GP+ A E+
Sbjct: 112 KLLSEIIEEEL-------PINPIAVLSGPSHAEEV 139
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
| >gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVP 208
+L + DAD++++ + + V E++ + + +P +I++ KG++ E
Sbjct: 39 LSLAAVLADADVIVSAVSMKGVRPVAEQV-----QALNLPPETIIVTATKGLDPE----- 88
Query: 209 RIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR-KPLAKFLRRP 267
TP+Q+ A P ++ L GPN++ EI A + + + + +
Sbjct: 89 TTRTPSQIWQAA--FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSE 146
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
F V+ N D + E+ G LKNV AI AG
Sbjct: 147 RFRVYTNSDPLGTELGGTLKNVIAIAAG 174
|
Length = 308 |
| >gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L + +EA+ AD + +PS +E + R +S AKG+ +
Sbjct: 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLPR-------ALGYVSCAKGLAPDGG-- 112
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-WRKPLAKFLRR 266
R+ +++ T + L GPN A EI A + E + +
Sbjct: 113 -RLSELARVLEFLTQARV---AVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSG 168
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGTI 297
P F V+ + D V E+ G LKNV A+ AG +
Sbjct: 169 PSFRVYTSRDRVGVELGGALKNVIALAAGMV 199
|
Length = 328 |
| >gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 276 DLVTHEVMGGLKNVYAIGAG 295
D+V E+ G LKNV AI AG
Sbjct: 2 DVVGVEIGGALKNVIAIAAG 21
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 100.0 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 100.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 100.0 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 100.0 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.97 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.94 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.94 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.81 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.76 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.74 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.74 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.73 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.72 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.7 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.7 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.69 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.69 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.67 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.66 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.64 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.63 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.62 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.61 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.6 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.58 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.57 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.57 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.55 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.54 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.53 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.53 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.52 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.52 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.5 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.47 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.45 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.45 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.45 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.44 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.43 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.41 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.41 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.41 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.41 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.39 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.39 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.39 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.38 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.37 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.36 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.36 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.36 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.36 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.35 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.35 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.35 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.33 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.33 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.33 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.32 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.32 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.32 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.29 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.28 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.27 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.27 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.26 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.25 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.25 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.24 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.22 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.2 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.2 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.17 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.17 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.15 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.12 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.11 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.07 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.06 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.04 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.02 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.99 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.98 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.97 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.95 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.89 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.84 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.82 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.81 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.79 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.72 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.64 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.61 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.58 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.54 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.46 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.46 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.45 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.44 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.43 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.42 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.39 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.38 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.33 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.29 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.25 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.22 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.19 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.15 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.14 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 98.13 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.11 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.08 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.04 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 98.03 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.02 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.98 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.96 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.95 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.94 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.93 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.9 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.9 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.89 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.87 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.86 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.83 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.82 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.82 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.81 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.8 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.79 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.76 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.75 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.72 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.71 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.71 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.7 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.7 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.7 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.7 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.7 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.68 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.68 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.67 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.66 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.66 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.65 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.63 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.63 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.62 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.62 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.61 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.58 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.57 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.56 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.54 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.53 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.53 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.53 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.52 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.52 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.52 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.51 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.5 | |
| PLN00106 | 323 | malate dehydrogenase | 97.48 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.46 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.45 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.42 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.39 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.38 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 97.36 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.36 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.36 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.35 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.34 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.33 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.31 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.31 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.31 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.31 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.3 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.3 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.29 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.28 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.26 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.26 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.26 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.26 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.24 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.23 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.21 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.21 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.2 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.19 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.18 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.17 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.17 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.17 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.15 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.14 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.14 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 97.14 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.13 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.11 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.1 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 97.09 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.06 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.02 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.02 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.02 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.0 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.98 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.97 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.97 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.96 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.94 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.9 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.89 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.86 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.84 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.84 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.84 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.8 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.79 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.78 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.75 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.72 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.71 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.71 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 96.68 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.67 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.67 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.66 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.65 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.62 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.62 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.6 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.6 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.58 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.58 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.57 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.57 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.54 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.51 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.5 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.4 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.4 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.4 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.38 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.37 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.36 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.31 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.26 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.22 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.21 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.2 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.2 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 96.18 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.17 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.17 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.07 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.05 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.04 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.97 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 95.96 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.95 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.95 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.94 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.91 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.87 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.83 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.81 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.75 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.71 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.71 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 95.68 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 95.67 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.58 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.52 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.51 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 95.51 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 95.48 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.46 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.41 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.37 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.36 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.35 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.33 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.27 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.24 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.22 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 95.2 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.16 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.14 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.12 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.1 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.09 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 95.09 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.03 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.93 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.92 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 94.92 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 94.89 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.78 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.75 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.74 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.73 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 94.69 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.66 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 94.63 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.59 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.54 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.4 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 94.4 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.37 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 94.36 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.35 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 94.33 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.31 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 94.3 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.26 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.22 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.19 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 94.17 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 94.16 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 94.16 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.12 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 94.07 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.04 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.03 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 93.99 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 93.97 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.94 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 93.91 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.86 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 93.86 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 93.85 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 93.84 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 93.83 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.78 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 93.72 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 93.56 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 93.5 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 93.5 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 93.49 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.49 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 93.39 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.29 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 93.2 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 93.18 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 93.1 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.08 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 93.05 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 93.04 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.01 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 93.0 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 93.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 92.96 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.86 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 92.86 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 92.8 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 92.78 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 92.75 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 92.73 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 92.69 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 92.68 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 92.68 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.67 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 92.67 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 92.61 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.59 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 92.58 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 92.58 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 92.58 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 92.55 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 92.49 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.49 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 92.48 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 92.46 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.39 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 92.36 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 92.36 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 92.34 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 92.24 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 92.22 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 92.19 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 92.16 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 92.13 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 92.11 | |
| PLN02985 | 514 | squalene monooxygenase | 92.09 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 92.08 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 91.94 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 91.91 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 91.9 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 91.81 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.8 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 91.79 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 91.77 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 91.7 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 91.68 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 91.66 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 91.64 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 91.56 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 91.54 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 91.53 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 91.53 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 91.52 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 91.52 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.45 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 91.39 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 91.38 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 91.35 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.34 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 91.31 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 91.23 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 91.21 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 91.16 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 91.16 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 91.09 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 91.09 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 91.08 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 91.02 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 90.99 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 90.9 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 90.89 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 90.89 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 90.89 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 90.88 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 90.88 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 90.8 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 90.8 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 90.78 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 90.73 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.71 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 90.67 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 90.64 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 90.64 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 90.63 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 90.63 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 90.54 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 90.53 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.5 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 90.46 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.4 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 90.38 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 90.34 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.33 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 90.31 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 90.29 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 90.28 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 90.26 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 90.24 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 90.23 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.18 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 90.14 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 90.14 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 90.1 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 90.08 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.03 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 89.99 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 89.99 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 89.95 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 89.92 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 89.88 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 89.87 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.86 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 89.84 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 89.83 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 89.83 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 89.75 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 89.73 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 89.72 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 89.69 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 89.68 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 89.68 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 89.66 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 89.62 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 89.62 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 89.61 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 89.61 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 89.61 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 89.57 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 89.54 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 89.53 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 89.5 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 89.49 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 89.49 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 89.47 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 89.36 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 89.35 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 89.29 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 89.26 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 89.18 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 89.13 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 89.13 |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=325.37 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=183.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|+|+|+||+++|..|+++ | |+|++|.|+++..++++..| +|+.|++++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~~~~----------------~N~~yLp~i----- 53 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEINETR----------------ENPKYLPGI----- 53 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHHhcC----------------cCccccCCc-----
Confidence 58999999999999999999999 8 99999999999887765332 367788764
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++ +++.+++|+.+++++||+|+++||++.++++++++++++.+ ++++++++||+.+
T Consensus 54 --~lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 54 --LLP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred --cCC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 332 37899999999999999999999999999999999988887 8999999999999
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ +..++++++.+.+|.. ++++++||+||+|++++.|+.+++ +.|.+.++.++.+|++.+|++|.++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~~--~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPDN--PIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCCC--eEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 7 6789999999999753 489999999999999999987766 5777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|+||||||||+||+||++++
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G 205 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLG 205 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999874
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=322.53 Aligned_cols=223 Identities=28% Similarity=0.440 Sum_probs=186.8
Q ss_pred HHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCC----CCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhh
Q 022050 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGY----LRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (303)
Q Consensus 33 ~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~----~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (303)
|.++++.+++.|||+|||+|+||+++|..|+++ |. | .|+|.+|.|+++.- .+++.+.+++.+
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~--~~~V~lw~~~~~~~----~~~~~~~in~~~------- 66 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIF--HNEVRMWVLEEIVE----GEKLSDIINTKH------- 66 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCC--CCeEEEEEeccccc----chHHHHHHHhcC-------
Confidence 568899999999999999999999999999998 61 1 16899999998620 011122344333
Q ss_pred hhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH--Hhhc
Q 022050 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKE 186 (303)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~--~l~~ 186 (303)
+|+.|++++ +++ .++.+++|+.+++++||+||++||++.++++++++++ ++++
T Consensus 67 ~N~~ylp~~-------~Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~ 121 (365)
T PTZ00345 67 ENVKYLPGI-------KLP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK 121 (365)
T ss_pred CCcccCCCC-------cCC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC
Confidence 477787765 332 3789999999999999999999999999999999998 7765
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhc
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~ 265 (303)
++++||++||++.++ ....++++++.+.++. ++.+++||+||.|++++.|+.+++ +.+.+.++.++++|+
T Consensus 122 ---~~~iIS~aKGIe~~t---~~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~ 192 (365)
T PTZ00345 122 ---HARAISLTKGIIVEN---GKPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFD 192 (365)
T ss_pred ---CCEEEEEeCCcccCC---CCcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhC
Confidence 678999999999863 1236899999999963 578999999999999999987766 577788999999999
Q ss_pred CCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 266 ~~g~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
+++|++|.++|++|+|+||+||||||||+||++||+++
T Consensus 193 ~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G 230 (365)
T PTZ00345 193 RPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLG 230 (365)
T ss_pred CCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999874
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=299.05 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=175.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCC---eeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDK---VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~---~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
||+|||+|+||+++|..|+.+ |...+. ++|++|.|+++.-. +.+.+.+++.+ +|+.|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~~~----~~~~~~in~~~-------~n~~ylpgi---- 64 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEIEG----RNLTEIINTTH-------ENVKYLPGI---- 64 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEeccccCC----HHHHHHHHhcC-------CCccccCCC----
Confidence 699999999999999999998 621111 69999999542100 11223344332 366677654
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+++ .++++++|+++++++||+||++||++.++++++++.+++++ ++++||++||+.
T Consensus 65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 232 36889999999999999999999999999999999999987 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCC----hhhHHHHHHHhcCCCeEEEecCC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA----EKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~----~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+ .++..++++++++.++. ++.+++||++|.|++++.|+.+++ +.+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~---~~~~~~~se~i~e~l~~---~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VS---KDGVKLLSDIIEEELGI---PCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cC---CCcCccHHHHHHHHhCC---CeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 75 12568899999999953 578999999999999999987765 566 67899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 277 LVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|+|+||+||||||||+||++||+++
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g 221 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWG 221 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=286.54 Aligned_cols=238 Identities=36% Similarity=0.455 Sum_probs=202.2
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCC-CCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~-~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
.+.++++.++.+++.+..+.||+|||+|+||++||+.++.+.+.+ .-..+|.+|.+.++.-.+ .++|.++|+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~he- 79 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRHE- 79 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhccccc-
Confidence 356888999999999988999999999999999999998874211 111479999998864432 4689999999884
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
|++|+++. ++| .++.+++|+.+++++||++|.++|.|.+..++++|..+
T Consensus 80 ------N~KYlpg~-------~lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 80 ------NVKYLPGI-------KLP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred ------cccccCCc-------cCC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 78888875 443 37889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCC-hh-hHHHHH
Q 022050 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA-EK-WRKPLA 261 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~-~~-~~~~i~ 261 (303)
+++ +...||++||++... .-++..+++++|.+.+|.| +.++.|||+|.|+++..++.+.++.. .. .-..++
T Consensus 129 vk~---~~~aISL~KG~e~~~-~g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGE-EGPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccC-CCCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 788999999999752 1224678999999999865 67999999999999999988877543 33 334599
Q ss_pred HHhcCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 262 ~lf~~~g~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
++|++++|++++.+|..|+|+||+||||||||+||+|||+++
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g 243 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLG 243 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCC
Confidence 999999999999999999999999999999999999999874
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=272.58 Aligned_cols=205 Identities=29% Similarity=0.444 Sum_probs=172.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|+||+++|..|+++ | +|++|.|+++..+.++.+|+ |..+++.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~~~~----------------~~~~l~~----- 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDINDNHR----------------NSRYLGN----- 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHhcCC----------------CcccCCC-----
Confidence 468999999999999999999998 6 48899999988776654321 2223321
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+++ .++.+++|+.++++++|+||++||+++++++++++++++++ ++++++++||++
T Consensus 58 -~~~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi~ 115 (341)
T PRK12439 58 -DVVLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGLE 115 (341)
T ss_pred -CcccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCCc
Confidence 00111 25778899988899999999999999999999999999987 788999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
.. +..++++++.+.++. .++.+++||+++.+++.|.++.+++ +.+.+.++.++++|++++|+++.++|++|+
T Consensus 116 ~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 116 QG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred CC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 86 568889999998863 3578899999999999999876655 556678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
||+|+|||+|||++||++|++++
T Consensus 189 e~~~alkNv~aia~G~~~g~~~g 211 (341)
T PRK12439 189 EMAGALKNVFAIAVGMGYSLGIG 211 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998753
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=241.79 Aligned_cols=203 Identities=20% Similarity=0.355 Sum_probs=166.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..++++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESINTKR----------------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHHHcC----------------CCcccCCCC------
Confidence 6899999999999999999999 8 99999999988776654321 122223221
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nGi~ 201 (303)
.++ .++++++|+.+++ .++|+||++||+++++++++++.+ ++.+ ++.+++++||+.
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 2577888888776 589999999999999999999998 8876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
.. +..++++.+.+.++. +++.+++||+++.+++.+.++.+.. +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 346678889888864 4677899999999999877755544 445567799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
||+|++||+||+++|+++|+.++
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~ 206 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLG 206 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999998653
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-27 Score=220.38 Aligned_cols=200 Identities=28% Similarity=0.398 Sum_probs=155.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++.+.++..+ .++.++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~~~----------------~~~~~~~g~----- 56 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAAER----------------ENREYLPGV----- 56 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhC----------------cccccCCCC-----
Confidence 58999999999999999999999 8 99999999988766543211 122222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++ .++..+++++++++++|+||++||+++++++++.+ ++ +.+++++++|+.+
T Consensus 57 --~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l----~~---~~~vi~~~~Gi~~ 109 (328)
T PRK14618 57 --ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGL----PR---ALGYVSCAKGLAP 109 (328)
T ss_pred --cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhc----Cc---CCEEEEEeecccc
Confidence 110 13667788888889999999999999988887653 44 6789999999986
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
.. .....+++.+.+... ..+.++.||+++.+++.+.+...+. +.+.+..+.++++|+..+++++.++|++|++
T Consensus 110 ~~---~~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~ 183 (328)
T PRK14618 110 DG---GRLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVE 183 (328)
T ss_pred CC---CccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchh
Confidence 52 123345555544221 2356889999999999988765544 5677788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|+++|||+|||++|+++++++
T Consensus 184 ~~~~lkN~~ai~~G~~~~~k~ 204 (328)
T PRK14618 184 LGGALKNVIALAAGMVDGLKL 204 (328)
T ss_pred hhHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999875
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=212.58 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=151.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|+||+++|..|+.+ | ++|++|+|++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~--------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG--------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC---------------------------------------
Confidence 48999999999999999999999 8 99999999752
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
.+++++++++|+||+++|+..++++++++.++ +++ +++++++++|+.
T Consensus 39 -----------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi~ 86 (308)
T PRK14619 39 -----------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGLD 86 (308)
T ss_pred -----------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCccc
Confidence 12335567899999999999999999998875 565 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
+. +...+++.+..+++. .++.+++||+++.++..+.+..++. +.+.+..+.++++|+..+++++.++|++|+
T Consensus 87 ~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~ 159 (308)
T PRK14619 87 PE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGT 159 (308)
T ss_pred CC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhh
Confidence 86 456788888877753 3677889999999999887765555 567778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
+|+++|||+|||++|+++++++
T Consensus 160 ~~~~alkNv~ai~~G~~~~~~l 181 (308)
T PRK14619 160 ELGGTLKNVIAIAAGVCDGLQL 181 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999865
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=210.65 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=165.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|+||+++|..|+++ | ++|++|+|++++++.++.++. ++.+.++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADRE----------------NPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcCc----------------ccccCCCC-----
Confidence 58999999999999999999999 8 899999999887765432210 11111111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+ ..++.++++++++++++|+||++||+++++++++++.+++++ ++++++++||+.+
T Consensus 54 --~~------------------~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KL------------------PDNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cC------------------CCCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 11 024667778887888999999999999999999999998887 7899999999998
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ +...+++.+.+.++.. ....++.||+++.+...+.+..+.. +.+.+..+.+.++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 3566778888877531 2467899999999988887665544 4567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|++++||+|++++|+..++.+
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~ 205 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGL 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998764
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-26 Score=192.93 Aligned_cols=154 Identities=32% Similarity=0.561 Sum_probs=121.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|+|+|+||+++|..|+.+ | ++|++|.|+++.++.++.+| .|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~~~~----------------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEINETR----------------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHHHHT----------------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHHHhC----------------CCCCCCCCc-------
Confidence 799999999999999999999 8 99999999998877655432 244555543
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcccc
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~ 204 (303)
.++ .++.+++|++++++++|+||++||++..++++++|++++++ ++++++++||+...
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 232 26889999999999999999999999999999999999987 88999999999665
Q ss_pred ccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChh
Q 022050 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEK 255 (303)
Q Consensus 205 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~ 255 (303)
+..++++++.+.++.+ ++++++||++++|+..+.|+.+++ +.+.+
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 5778999999999864 389999999999999999987766 44443
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=166.60 Aligned_cols=193 Identities=19% Similarity=0.190 Sum_probs=139.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+.+|..|+++ | ++|++++|++++++.++.+++ .... ++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 7899999999999999999998 8 899999998876665432221 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .++..+++..++ +++|+||++||++++++++++|.+++.+ ++.|++++||+...
T Consensus 51 --~~------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 --IT------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred --ee------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 022344556554 8999999999999999999999999887 78999999998764
Q ss_pred cccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+.+.++++... ...+.+.+|++..+.+.+...........+..+.+.++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 34566664321 0123467888887776654221111122234788999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 278 VTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
.+.+|.|.+.|+.....+.+.|..
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~ 199 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCT 199 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCC
Confidence 999999999998777776666543
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=152.49 Aligned_cols=162 Identities=17% Similarity=0.069 Sum_probs=125.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||.+|+..|.++ |++.+ .+|++|+|++++++.+. ..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l~-------------------------~~------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNAS-------------------------DK------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHHH-------------------------Hh-------
Confidence 6899999999999999999988 74333 57999999876554211 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.++..+++..+.+++||+||+|||++.+.++++++.+++++ +++|||+..|+..+
T Consensus 49 ----------------------~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~ 103 (272)
T PRK12491 49 ----------------------YGITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK 103 (272)
T ss_pred ----------------------cCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence 02344567777788999999999999999999999998876 78999999999885
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.|++.++.. .-+++.+||++..++.|.+.+... ..+.++.+.+.++|+..|-..++.++.+
T Consensus 104 ------------~l~~~l~~~--~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~ 165 (272)
T PRK12491 104 ------------STENEFDRK--LKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLM 165 (272)
T ss_pred ------------HHHHhcCCC--CcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHh
Confidence 477777632 236899999999999996543322 2245578999999999998888876654
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=153.79 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=129.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+| ++++++++.+++ ...... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g~-------------------~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERGL-------------------VIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCCe-------------------EEEeCC---Ce
Confidence 7999999999999999999999 8 99999999 666655432221 111000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .+...+++.+++.+++|+||+|||+++++++++++++++.+ +++|++++||+...
T Consensus 52 ~~--------------------~~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AV--------------------VPGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EE--------------------ecceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 00 02234566666668899999999999999999999998877 78999999999764
Q ss_pred cccccccCCHHHHHHhHhCCCCcc------EEEEeCCCcHHHHhccCceEEEEe----CChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~------~~v~~GP~~a~ev~~g~~~~~~~~----~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
+.+.++++....- .+.+.+|+.......+. +.++ ...+..+.+.++|...++.++.
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~---~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~ 174 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHR---LTFGEIPGQRSERTRAVRDALAGARLEVVL 174 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCc---EEEcCCCCCcCHHHHHHHHHHHhCCCCcee
Confidence 3466666532100 12223444433222121 2222 1234667899999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHH
Q 022050 274 NGDLVTHEVMGGLKNVYAIGAGTI 297 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~Ai~~G~~ 297 (303)
++|+...+|.+.+.|...-+.+.+
T Consensus 175 ~~di~~~~w~Kl~~N~~~n~l~a~ 198 (305)
T PRK12921 175 SENIRQDIWRKLLFNAVMNGMTAL 198 (305)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999654443433
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=149.56 Aligned_cols=162 Identities=22% Similarity=0.185 Sum_probs=128.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||.+|+..|.++ |.+.+ .+|.+.+|++++.+++. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~l~-------------------------~------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAALA-------------------------A------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHHHH-------------------------H-------
Confidence 58999999999999999999998 74443 68999999987653210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
++ ++..++|..+++.++|+||+||||+.++++++++++ ..+ +++|||+..|++.
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 11 122367777888999999999999999999999998 555 7899999999988
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
+ .+.++++ . ..+++.+||++..++.|.+.+... ..+.++.+.+.++|+.-|-.+++.++.+-
T Consensus 101 ~------------~l~~~l~-~--~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~d 163 (266)
T COG0345 101 E------------TLERLLG-G--LRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVEESLMD 163 (266)
T ss_pred H------------HHHHHcC-C--CceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEechHHhh
Confidence 5 4788887 2 247899999999999997554332 23556788999999999999998877653
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=153.45 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=129.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+.++.+++ ......+ .
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~~~~~g~-------------------~~~~~~~--~ 53 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDELRAHGL-------------------TLTDYRG--R 53 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHHHHhcCc-------------------eeecCCC--c
Confidence 58999999999999999999999 8 99999999753 333222110 0100000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+... ...++.++++. +++.++|+||++||+..+.++++++.+++.+ +++|++++||+..
T Consensus 54 ~~~~-----------------~~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 54 DVRV-----------------PPSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred ceec-----------------ccceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 0000 00135566666 4678999999999999999999999998877 7889999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCC-----ccE-EEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPI-----ENI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~-----~~~-~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
. +.+.+.++... .++ ++..||+.+.....|.. .+. +.+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l---~~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGAL---AIE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCce---Eec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 34666654321 011 24668877754444431 222 224568899999999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVYA 291 (303)
Q Consensus 277 i~g~e~~~~lkNv~A 291 (303)
+.+.+|.|.+.|.+.
T Consensus 178 i~~~~w~Kl~~N~~~ 192 (341)
T PRK08229 178 MRAVQWAKLLLNLNN 192 (341)
T ss_pred hHHHHHHHHHHHhcc
Confidence 999999999999743
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=152.74 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=136.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| ...... +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~- 50 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---G- 50 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---C-
Confidence 7999999999999999999999 8 89999999986 776655443 111100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. ......+++. +....+|+||++||+++++++++.+.+++++ ++.|++++||+++.
T Consensus 51 -~~------------------~~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 51 -NF------------------TTPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred -cc------------------ccccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 00 0012222333 3466899999999999999999999999998 88999999999986
Q ss_pred cccccccCCHHHHHHhHhCCC------CccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~------~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.+.++++.. ....+++.||+.....+.|........ ..++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 4566655432 112356677777776665544333232 2346789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVYAI 292 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai 292 (303)
+....|.+++-|.---
T Consensus 177 i~~~~w~Kl~~N~~in 192 (307)
T COG1893 177 ILAAIWRKLVVNAAIN 192 (307)
T ss_pred HHHHHHHHHHhhhccc
Confidence 9999999999996433
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-16 Score=143.93 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=122.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|+||+|||+|+||.+++..|.++ |.+.+ ++|.+|+|+++. .+. +. ..
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~---------l~----------------~~----- 48 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ---------LY----------------DK----- 48 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH---------HH----------------HH-----
Confidence 57999999999999999999987 63322 689999987532 111 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+ ....++.+..++++++|+||+|||++.+.++++++.+++.+ ++.|||+++|++
T Consensus 49 ----~-------------------~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 49 ----Y-------------------PTVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred ----c-------------------CCeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 0 02344567777788999999999999999999999998876 678999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+ .|++.++. . -+++.+||++..++.|.+.+... ..++++.+.+..+|+..|-..+++++.
T Consensus 103 ~~------------~l~~~~~~--~-~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 164 (277)
T PRK06928 103 LD------------DLLEITPG--L-QVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREEN 164 (277)
T ss_pred HH------------HHHHHcCC--C-CEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhh
Confidence 75 36777753 1 37899999999999996543221 224557889999999999888877653
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-17 Score=151.40 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=127.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhh-hHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE-HLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~-~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|+|+|+||+.+|..|++. | ++|++++|+++++++++++ ++ .+...
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~~Gl-------------------~i~~~---- 52 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQAGGL-------------------TLVEQ---- 52 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhcCCe-------------------EEeeC----
Confidence 48999999999999999999999 8 8999999988777765432 21 11100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++ .. . .++...++ +....+|+||+|||++++.++++++++++.+ ++.|++++||+.
T Consensus 53 g~-~~------------~------~~~~~~~~--~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~ 108 (305)
T PRK05708 53 GQ-AS------------L------YAIPAETA--DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLG 108 (305)
T ss_pred Cc-ce------------e------eccCCCCc--ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCC
Confidence 00 00 0 01111111 1235789999999999999999999999988 899999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCcc------EEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEec
Q 022050 202 AELEAVPRIITPTQMINRATGVPIEN------ILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~------~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
.. +.+.++++....- .+...+|+...+.+.+. +.++ .+.+..+.+.++|...++.+..+
T Consensus 109 ~~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~ 174 (305)
T PRK05708 109 SQ-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWT 174 (305)
T ss_pred CH-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccC
Confidence 86 4566777642100 12233555554433332 1222 22345688899999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 022050 275 GDLVTHEVMGGLKNVY 290 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~ 290 (303)
+|+.+..|.|.+-|.-
T Consensus 175 ~di~~~~W~Kl~~N~~ 190 (305)
T PRK05708 175 VDILTRLWRKLALNCA 190 (305)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999999974
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=147.78 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=130.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|+||+.+|..|+++ | ++|++|.|++. +.++.+++ .+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g~-------------------~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENGL-------------------QVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCCe-------------------EEEeCC---
Confidence 348999999999999999999999 8 99999999863 33222211 111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++... .+..++++.+ ....+|+||+|||+.++.++++.+.+++.+ +++|++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1244555544 467899999999999999999999999887 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCc------cEEEEeCCCcHHHHhccCceEEEEeC-C-----hhhHHHHHHHhcCCCe
Q 022050 202 AELEAVPRIITPTQMINRATGVPIE------NILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~------~~~v~~GP~~a~ev~~g~~~~~~~~~-~-----~~~~~~i~~lf~~~g~ 269 (303)
.. +.+.++++.... ..+...+|++....+.|...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 75 456777754210 01234566665544444322222222 2 3456788999999999
Q ss_pred EEEecCChhHHHHHHHHHHHHHH
Q 022050 270 TVWDNGDLVTHEVMGGLKNVYAI 292 (303)
Q Consensus 270 ~~~~~~Di~g~e~~~~lkNv~Ai 292 (303)
.+..++|+....|.|.+-|+.--
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n 202 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYN 202 (313)
T ss_pred CceeCchHHHHHHhHhheecchh
Confidence 99999999999999999996433
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=138.22 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=120.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC-CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||+|.||.+++..++.+ |.... .++.+++|+ +++.+++ ..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~~--------------------------~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQL--------------------------QA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHHH--------------------------HH-----
Confidence 37899999999999999999887 52110 136677764 3333211 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
. .++..++|++++++++|+||++||++..+++++++.++++ +++|||+++|++
T Consensus 51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 0 0244556787888899999999999999999999998765 468999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+ .|++.++.. ...++.|||++.+++.+.+...+. ..+++..+.++++|+.-|-..++.++.
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~ 166 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEE 166 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHH
Confidence 75 477777642 245689999999999998766543 345677899999999999888776543
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-15 Score=137.48 Aligned_cols=163 Identities=16% Similarity=0.156 Sum_probs=120.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|||+|+||.+|+..|.++ |.+.+ ++|++|+|+.+ +++.+. ..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~l~-------------------------~~----- 50 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQELH-------------------------QK----- 50 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHHHH-------------------------Hh-----
Confidence 37999999999999999999988 63333 68999999763 222110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++..+.++.+++++||+||++||++...++++++.+.+.+ +++|||+++|+.
T Consensus 51 ------------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~ 103 (279)
T PRK07679 51 ------------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVS 103 (279)
T ss_pred ------------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 02445567777788999999999999999999999988876 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
.+ .+.+.++.. ..+++.+||++.....+.+.+ +.+. +.+..+.++.+|+.-|-.+++.++.+-
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~mPn~~~~~~~~~t~~-~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~~~ 168 (279)
T PRK07679 104 TH------------SIRNLLQKD--VPIIRAMPNTSAAILKSATAI-SPSKHATAEHIQTAKALFETIGLVSVVEEEDMH 168 (279)
T ss_pred HH------------HHHHHcCCC--CeEEEECCCHHHHHhcccEEE-eeCCCCCHHHHHHHHHHHHhCCcEEEeCHHHhh
Confidence 75 355555432 246899999998888775422 2222 345778999999998987777666443
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-15 Score=137.33 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=116.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||++++..|.++ |.+.+ .++++++|++++.
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~~-------------------------------------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKNT-------------------------------------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhcC--------------------------------------
Confidence 8999999999999999999987 64332 4588887765321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
......++.++++++|+||+|||++.++++++++.+++.+ ..|||.++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 1123345666778999999999999999999999988764 5789999999864
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
.+++.++.. ...++.+||++..+..+.+.+... ..+.+..+.+.++|+..|...++.++.
T Consensus 97 ------------~l~~~~~~~--~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 157 (260)
T PTZ00431 97 ------------TLEEMVGVE--AKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQEIKEKD 157 (260)
T ss_pred ------------HHHHHcCCC--CeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEEEEChHH
Confidence 466777532 246799999999888875433221 123457899999999999999987663
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=7e-15 Score=135.88 Aligned_cols=161 Identities=11% Similarity=0.177 Sum_probs=120.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||++++..|.++ |.+.+ .+|.+|+|++++.+++. . ..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~~~---------~-------------~~--------- 47 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYHIK---------E-------------RY--------- 47 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHHHH---------H-------------Hc---------
Confidence 6899999999999999999988 73322 47999999986543210 0 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
..+..+.+..+++.++|+||++||++.+.++++++.+++.+ +++|+++++|+...
T Consensus 48 ----------------------~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 48 ----------------------PGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred ----------------------CCeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 02445567777788999999999999999999999998876 68999999998653
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
.+.+.++. ..++.+|+++.....|..... .+ .+.+..+.+.++|+..|...++.+|+.-
T Consensus 103 ------------~L~~~~~~----~~~r~~p~~~~~~~~G~t~~~-~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC----QVARIIPSITNRALSGASLFT-FGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC----CEEEECCChHHHHhhccEEEe-eCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 256788999877667754322 22 2345678999999999988888887433
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=131.91 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=115.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|+||.+|+..|.++ |++.+ .+|++| +|++++.+.+ ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~~--------------------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDVF--------------------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHHH--------------------------HH------
Confidence 7999999999999999999998 72222 388888 8887654321 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++..++++.++++++|+||+++|++.++++++++.+.+.+ +++|||.++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02445567777788999999999999999999999887776 7889999999866
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
+ .+.+.++.. + .++.+|+++..+..+...++.. ..+.+..+.++.+|+.-|-..+.++
T Consensus 101 ~------------~l~~~~~~~--~-vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e 159 (266)
T PLN02688 101 A------------DLQEWAGGR--R-VVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGKIWVVDE 159 (266)
T ss_pred H------------HHHHHcCCC--C-EEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence 4 355666532 2 4568999999887765333222 2355678999999998887334433
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=141.91 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=135.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..|+++ | ++|++|++++++++.++.. .++.+.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l~~g-----------------~~~~~e~~l~~---- 53 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKLNKG-----------------KSPIYEPGLDE---- 53 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHhhcC-----------------CCCCCCCCHHH----
Confidence 6899999999999999999999 9 9999999999887764421 12233333210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
.+.+... ..++++++++.++++++|+||++||.. ++.++++.+.+.+++ +++|
T Consensus 54 -------~~~~~~~-------~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 54 -------LLAKALA-------AGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred -------HHHHhhh-------cCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 0000000 013678888888889999999999975 478888888888876 6666
Q ss_pred EEeeccCccccccccccCCH-HHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcCC
Q 022050 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~-~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~~ 267 (303)
+ ..+++.+.+ ...+ .+++++..|.. ...+.+..+|.++.+... ..+..++.+.+.+..+.++++|+.-
T Consensus 117 i-~~STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 V-LESTVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred E-EeCcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 5 455777652 2222 23333322321 123568899999875432 2233445566777888899998876
Q ss_pred C-eEEEecCChhHHHHHHHHHHHH
Q 022050 268 H-FTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 268 g-~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+ ..++...|+...|.+|.+.|.|
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~ 214 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTF 214 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHH
Confidence 5 3677788999999999999998
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=130.32 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=114.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|+||++++..|.++ |. .. ++|.+|+|++++.+++..+ +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~~-~~v~v~~r~~~~~~~~~~~---------------------~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-PA-KDIIVSDPSPEKRAALAEE---------------------Y--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-Cc-ceEEEEcCCHHHHHHHHHh---------------------c---------
Confidence 58999999999999999999987 62 21 5799999998765431100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
++.++.+..+++.++|+||++||++.++++++++.+++ + ++|+|+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 13344566677789999999999999999999998876 3 589999999865
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
+ .+++.++... -.++..|+++..+..+... ++.+ .+.+..+.++.+|+.-|..+++.
T Consensus 100 ~------------~l~~~~~~~~--~iv~~~P~~p~~~~~~~~~-i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 100 A------------RLERLLGADL--PVVRAMPNTPALVGAGMTA-LTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred H------------HHHHhcCCCC--cEEEecCCchHHHcCceEE-EecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3 4666665321 3567899999877776432 2222 34567789999999999877665
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=123.35 Aligned_cols=176 Identities=19% Similarity=0.203 Sum_probs=120.3
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+||| +|+||+++|..|+++ | ++|++|+|++++++.++.+.+ ..+...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999999 8 899999999887654332110 001000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
|+. .++.. ++..++++++|+||+|||++..+++++++.+.+. +++||+++||+..
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01223 3556778899999999999999999999887665 4789999999986
Q ss_pred cc-ccc----cccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCc----eEEEEeCC-hhhHHHHHHHhcCC-CeEE
Q 022050 203 EL-EAV----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (303)
Q Consensus 203 ~~-~~~----~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~----~~~~~~~~-~~~~~~i~~lf~~~-g~~~ 271 (303)
.. ... +...+.++.++++++.. .-++...|+++.++..+.. ..+++++| ++..+.+.++.... ||.+
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~--~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPET--SRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCCC--CeEeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 20 000 11234467788888631 2367788888877665421 11234554 45678889999887 9998
Q ss_pred EecC
Q 022050 272 WDNG 275 (303)
Q Consensus 272 ~~~~ 275 (303)
+..-
T Consensus 185 vd~G 188 (219)
T TIGR01915 185 LDAG 188 (219)
T ss_pred ccCC
Confidence 6544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=130.67 Aligned_cols=174 Identities=24% Similarity=0.357 Sum_probs=101.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||+|.||..||..++.+ | ++|++||++++.+++... . +... ++...+.. .+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~----i~~~---l~~~~~~~-~~~~~------- 58 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-R----IERL---LDRLVRKG-RLSQE------- 58 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-H----HHHH---HHHHHHTT-TTTHH-------
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-H----HHHH---Hhhhhhhc-cchhh-------
Confidence 799999999999999999999 9 999999999988765432 1 1110 11111111 01100
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+. +..+.++.+++|++++. +||+||+|+|+. .+++++++|..++++ ++++.|+++++..
T Consensus 59 -----~~----------~~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 59 -----EA----------DAALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp -----HH----------HHHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred -----hh----------hhhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 00 00013789999999876 999999999997 589999999999988 8999999999887
Q ss_pred ccccccccCCHHHHHHhHhCCCCc--c-EEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIE--N-ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~--~-~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.+ ......|++++.-||..|.+ + +.++.||.+ +.+..+.+.+++...|..+....|
T Consensus 120 ~~l-a~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T----------------~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 SEL-AAALSRPERFIGMHFFNPPHLMPLVEVVPGPKT----------------SPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp HHH-HTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-----------------HHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHH-HhccCcCceEEEEecccccccCceEEEeCCCCC----------------CHHHHHHHHHHHHHCCCEEEEecC
Confidence 631 11122333333333322211 1 223333333 334556666777766776665444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=134.27 Aligned_cols=183 Identities=17% Similarity=0.153 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhh
Q 022050 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (303)
Q Consensus 53 ~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 132 (303)
+||+.+|..|+++ | ++|++++|+ +++++++++++ .+.... ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999999 9 999999997 55665543332 111100 00000
Q ss_pred hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCC
Q 022050 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (303)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~ 212 (303)
.++.+++++++ ...+|+||++||+++++++++.+++++.+ +++|++++||++..
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 12345566655 67899999999999999999999999987 79999999999875
Q ss_pred HHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHHHHHHH
Q 022050 213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (303)
Q Consensus 213 ~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~~l 286 (303)
+.+.+.++.+. ...+.+.+|++....+.+...+.......+..+.+.++|...++.+..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 45666665321 1123456777665554443221111112245688999999999999999999999999999
Q ss_pred HHH-HHHHHHHHh
Q 022050 287 KNV-YAIGAGTIY 298 (303)
Q Consensus 287 kNv-~Ai~~G~~~ 298 (303)
.|+ +...+++++
T Consensus 178 ~N~~~n~l~al~~ 190 (293)
T TIGR00745 178 VNAAINPLTALLD 190 (293)
T ss_pred heechhHHHHHHC
Confidence 998 677777665
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=131.63 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=133.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|.||++||..|+.+ | ++|++||++++.+++..+. +++....+........ ....
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----i~~~~~~l~~~~~~g~-~~~~----- 65 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAMEL-----IESGPYGLRNLVEKGK-MSED----- 65 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHhhhhhHHHHHHcCC-CCHH-----
Confidence 36899999999999999999999 8 8999999999887643211 1110000000000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. +..+.++.++++. +++++||+||+|+|++. ++++++++.+++++ +++++|+++|+
T Consensus 66 --~~---------------~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~ 124 (291)
T PRK06035 66 --EA---------------KAIMARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI 124 (291)
T ss_pred --HH---------------HHHHhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence 00 0001256677777 46899999999999985 78999999999887 78999999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..+. + .+...|..+..+... ..++.+ .+.+..+.+..++...|..+....|.-
T Consensus 125 ~~~------------~la~~~~~~~-r-~ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 125 MIA------------EIATALERKD-R-FIGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred CHH------------HHHhhcCCcc-c-EEEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 764 2444443321 1 223333333322222 122222 355677888899998898888878999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022050 279 THEVMGGLKNVYAIGAGTIY 298 (303)
Q Consensus 279 g~e~~~~lkNv~Ai~~G~~~ 298 (303)
|.-....+-|.+.-|.-+++
T Consensus 189 gfv~nRl~~~~~~ea~~~~~ 208 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSFE 208 (291)
T ss_pred CeeHHHHHHHHHHHHHHHHH
Confidence 99999999999988886665
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=127.47 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=126.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||++||..|+.+ | ++|++|+++++.+++++.. +... .....+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~---------~~~~~~~------ 57 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERA---------LGVYAPL------ 57 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---------HHHhhhc------
Confidence 57899999999999999999998 8 8999999999887654421 1000 0000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
... +..+.++.+++|+.+++++||+||+|||++. +.++++++.+++++ +++|+|.++|+
T Consensus 58 --~~~--------------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg~ 118 (311)
T PRK06130 58 --GIA--------------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSGL 118 (311)
T ss_pred --ccH--------------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCCC
Confidence 000 0001246677888888899999999999974 78899999988877 67888999987
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
... .+.+.++.+. -.+...|+.+..... ...++.+ .+.+..+.+.++|+.-|..++.. .|.
T Consensus 119 ~~~------------~l~~~~~~~~--~~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~ 182 (311)
T PRK06130 119 PIT------------AIAQAVTRPE--RFVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI 182 (311)
T ss_pred CHH------------HHHhhcCCcc--cEEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 653 3555554321 234556666654332 2222222 24567899999999989876655 577
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGT 296 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~ 296 (303)
.|.-+--.+--.++=+.-+
T Consensus 183 ~G~i~nr~~~~~~~Ea~~l 201 (311)
T PRK06130 183 PGFIANRIQHALAREAISL 201 (311)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 7774444444444433333
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-14 Score=109.60 Aligned_cols=94 Identities=27% Similarity=0.320 Sum_probs=72.9
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
||+|||+|+||.+++..|..+ |. . +++|.++ +|++++++++.. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~-~~~v~~~~~r~~~~~~~~~~-------------------------~------- 45 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-K-PHEVIIVSSRSPEKAAELAK-------------------------E------- 45 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS---GGEEEEEEESSHHHHHHHHH-------------------------H-------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-C-ceeEEeeccCcHHHHHHHHH-------------------------h-------
Confidence 799999999999999999998 74 3 3799966 999887654211 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+..++. +..++++++|+||+|||++.+.++++++ +...+ ++++||+++|
T Consensus 46 ----------------------~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 46 ----------------------YGVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp ----------------------CTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred ----------------------hccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 0233333 6788899999999999999999999999 65666 7899999987
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=129.76 Aligned_cols=194 Identities=18% Similarity=0.120 Sum_probs=139.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|+|+|.+|...|..||+. | |+|+.+|.++++++.+|.. ..|.|.++++..+.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~ln~g-----------------~~PI~EpgLe~ll~~ 57 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVELLNKG-----------------ISPIYEPGLEELLKE 57 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHhCC-----------------CCCCcCccHHHHHHh
Confidence 8999999999999999999999 9 9999999999999876532 367888887533332
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
... -.++++|+|.+++++++|++|||||.. ++++++++|.++++. .+ +
T Consensus 58 ~~~------------------~gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 58 NLA------------------SGRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ccc------------------cCcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 110 024899999999999999999999652 688899999998875 33 4
Q ss_pred EEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCC-hhhHHHHHHHhcCC-
Q 022050 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGA-EKWRKPLAKFLRRP- 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~-~~~~~~i~~lf~~~- 267 (303)
|..-+.+.+. ++..+.+.+.+.... ..+.+++.|.|-+|... -.|..++++.. ....+.+.+++...
T Consensus 116 vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 116 VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFL 188 (414)
T ss_pred EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhh
Confidence 4444455554 344444444443322 24789999999887542 22555666543 34567777777542
Q ss_pred --CeEEEecCChhHHHHHHHHHHHH
Q 022050 268 --HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 268 --g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
..+ ..-.|+..+|+-+..-|.|
T Consensus 189 ~~~~p-~l~t~~~~AE~IKyaaNaf 212 (414)
T COG1004 189 RQDVP-ILFTDLREAELIKYAANAF 212 (414)
T ss_pred hcCCC-EEEecchHHHHHHHHHHHH
Confidence 333 3568899999999999976
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-13 Score=124.78 Aligned_cols=196 Identities=16% Similarity=0.124 Sum_probs=131.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhc-ccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC-AYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~-~~l~~~~~~~ 121 (303)
++||+|||+|.||.++|..++.+ | ++|++||++++.+++... .+++. +.+..+.. .......
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~---l~~~~~~g~~~~~~~~--- 65 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKS---LDRLVKKGKMTEADKE--- 65 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHH---HHHHHHcCCCCHHHHH---
Confidence 46899999999999999999999 8 899999999987754221 11110 11111110 0000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....++++++|.++ +++||+||+|+|++. +.+++++|.+++++ +++|+|.++|
T Consensus 66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~ 120 (282)
T PRK05808 66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS 120 (282)
T ss_pred ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00125777888764 789999999999864 47999999999988 7888899999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+..+ .+.+.++.+. -.+...|+.+..+..+. .++. ..+.+..+.+..+|...|..+....|.
T Consensus 121 ~~~~------------~la~~~~~~~--r~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~ 184 (282)
T PRK05808 121 LSIT------------ELAAATKRPD--KVIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184 (282)
T ss_pred CCHH------------HHHHhhCCCc--ceEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 8764 3666665442 25667788876665443 2232 245678889999999988888776777
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGT 296 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~ 296 (303)
.|.-+--.+-..+.-++=+
T Consensus 185 ~g~i~~Ri~~~~~~ea~~~ 203 (282)
T PRK05808 185 PGFVVNRILIPMINEAIFV 203 (282)
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 6666555555554444433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=129.37 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=101.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||+.||..|+.+ | ++|++||++++.+++... . +... +..+.+..
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~~-~----i~~~---~~~~~~~~---------- 61 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALRA-N----VANA---WPALERQG---------- 61 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcC----------
Confidence 357899999999999999999999 9 999999999987654321 1 1110 01010000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+.++ ....++.+++++++++.+||+|+++||+. .++++++++..++++ +++|.|+|++
T Consensus 62 ----~~~~-------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~ 121 (321)
T PRK07066 62 ----LAPG-------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSG 121 (321)
T ss_pred ----CChh-------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCc
Confidence 0000 00126778889988999999999999997 478899999999998 8899999998
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHH
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASE 239 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~e 239 (303)
+..+.+ ......|++++.-||.+|.+ -+.++.||.|..+
T Consensus 122 l~~s~l-a~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e 163 (321)
T PRK07066 122 LLPTDF-YARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPE 163 (321)
T ss_pred cCHHHH-HHhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence 876421 11233444444444433322 1345555555443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=121.98 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=124.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.++|..++.+ | ++|++|+++++.+++++.. +..... .+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-~~~~~~-------------~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-IAKLAD-------------RYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-HHHHHH-------------HHHHcC-----
Confidence 47999999999999999999999 8 8999999999877764421 000000 011100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.+++.. +..+.++++++|+++++++||+||+|+|++ .++++++++.+++++ +++|++.++++
T Consensus 58 --~~~~~~~~---------~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPA---------EAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhH---------HHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 00000000 000136788899998899999999999987 689999999998887 78877877666
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEe-cCCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~-~~Di 277 (303)
..+ + +.+.+..+. ++.. . ++...........++. ..+.+..+.+.+++...|..+.. ..|.
T Consensus 124 ~~~-----------~-~~~~~~~~~-r~vg-~--Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 LPS-----------Q-FAEATGRPE-KFLA-L--HFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred CHH-----------H-HHhhcCCcc-cEEE-E--cCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 543 2 334443332 2211 1 2211122222223332 23556778888888888876654 3576
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAIGAGTI 297 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~~ 297 (303)
.|--+--.+-.++.-|+-++
T Consensus 188 pgfi~nRi~~~~~~ea~~l~ 207 (287)
T PRK08293 188 PGYILNSLLVPFLSAALALW 207 (287)
T ss_pred CCHhHHHHHHHHHHHHHHHH
Confidence 66666666666665555443
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-13 Score=129.36 Aligned_cols=157 Identities=23% Similarity=0.290 Sum_probs=111.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||+.||..+|.. | ++|+++|++++.+++.... +... +++..+.. .+...
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~k~~~~g-~l~~~----- 62 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-----IEKN---LEKLVEKG-KLTEE----- 62 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-----HHHH---HHHHHhcC-CCChh-----
Confidence 58999999999999999999998 8 8999999998877664421 1111 12211111 11110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. + +..+..++.++++. ++.+||+||+||++. .++++++++..++++ ++++.|+|+++
T Consensus 63 --~--~-------------~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 63 --E--A-------------DAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred --h--H-------------HHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 0 0 11224677788876 689999999999997 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCcc---EEEEeCCCcHHHHh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIY 241 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~v~~GP~~a~ev~ 241 (303)
+++.+. ....+|++++.-||.+|.+. +.++.|..|..++.
T Consensus 122 ~it~ia-~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~ 164 (307)
T COG1250 122 SITELA-EALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETV 164 (307)
T ss_pred CHHHHH-HHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHH
Confidence 986432 23467778787777666422 46777777655544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=129.15 Aligned_cols=185 Identities=18% Similarity=0.178 Sum_probs=122.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||++||..|+.+ | ++|++||++++.++++.. .+.... +...++...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~~-----~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIGE-----VLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH-------HHHhhhccc-----
Confidence 37999999999999999999999 9 899999999987764321 111000 000011110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+. ...++.+++++++++++||+||+++|++. ++.+++++..++++ +++|.|.++|+
T Consensus 61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 00146788899888999999999999985 77788999888887 78889999988
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
..+ .+.+.+..+. ..++..|+.+.... ....++.+. +.+..+.+..+|+..|-.++.. .++
T Consensus 120 ~~s------------~l~~~~~~~~--r~~~~hP~nP~~~~--~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~ 183 (495)
T PRK07531 120 LPS------------DLQEGMTHPE--RLFVAHPYNPVYLL--PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI 183 (495)
T ss_pred CHH------------HHHhhcCCcc--eEEEEecCCCcccC--ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC
Confidence 764 2455554332 35677777755322 112222222 3567889999999888777655 465
Q ss_pred hHHHHHHHHH
Q 022050 278 VTHEVMGGLK 287 (303)
Q Consensus 278 ~g~e~~~~lk 287 (303)
.|.-....+-
T Consensus 184 ~gfi~nrl~~ 193 (495)
T PRK07531 184 DAFVGDRLLE 193 (495)
T ss_pred cchhHHHHHH
Confidence 5555444433
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-13 Score=124.69 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=115.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC-chhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|+||.++|..|..+ | ++|+++++.. +..++ ...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~------ 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE------ 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH------
Confidence 7899999999999999999998 8 7887766543 22211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+.. .++.+++++||+|+++||++ +...+++++.+.+++ + .+||+..|+.
T Consensus 46 -----------------------~Gv~~-~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~ 97 (314)
T TIGR00465 46 -----------------------DGFKV-GTVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN 97 (314)
T ss_pred -----------------------CCCEE-CCHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence 02333 34677889999999999999 777778889988876 4 4899999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-H------hccCceEEEEeC--ChhhHHHHHHHhcCCCeE--
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT-- 270 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v------~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~-- 270 (303)
.. .+...++.. .-+++.+||++.. + +.|.++.+.... +.+..+.+..+|..-|..
T Consensus 98 i~------------~~~~~~~~~--~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~ 163 (314)
T TIGR00465 98 IH------------FVQIVPPKD--VDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA 163 (314)
T ss_pred Hh------------hccccCCCC--CcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 75 244455432 2478999999998 4 888776653432 345667788888877665
Q ss_pred -----E---EecCChhHHH--HHHHH
Q 022050 271 -----V---WDNGDLVTHE--VMGGL 286 (303)
Q Consensus 271 -----~---~~~~Di~g~e--~~~~l 286 (303)
. ++.+|..+.. +||..
T Consensus 164 ~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 164 GVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred ceeechhHhhhhHHhcCcchhHHhHH
Confidence 3 5667777665 45544
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-12 Score=117.69 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=115.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.++|..|+.+ | ++|++|+++++.++++... +.+. +.++.... .++..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~---~~~~~~~g-~~~~~----- 63 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLAT-----INGN---LARQVAKG-KISEE----- 63 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---HHHHHHcC-CCCHH-----
Confidence 47899999999999999999999 8 8999999999877653211 1110 00000000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. +..+.+++++++++ ++++||+||+|||+. .++.+++++.+++++ +++++|.++++
T Consensus 64 --~~---------------~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 64 --AR---------------AAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred --HH---------------HHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 00 00012577778875 578999999999985 578889999999887 78888999887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeC-CCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGG-PNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~G-P~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
... .+.+.+..+...+.+... |.. +..+ ..++. ..+.+..+.+..+|..-|..+++..|.
T Consensus 123 ~~s------------~la~~~~~~~r~~g~h~~~p~~---~~~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~ 185 (292)
T PRK07530 123 SIT------------RLASATDRPERFIGIHFMNPVP---VMKL--VELIRGIATDEATFEAAKEFVTKLGKTITVAEDF 185 (292)
T ss_pred CHH------------HHHhhcCCcccEEEeeccCCcc---cCce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 654 244444322111111111 111 1111 12222 345677888999998888877777776
Q ss_pred hHHHHHHHH
Q 022050 278 VTHEVMGGL 286 (303)
Q Consensus 278 ~g~e~~~~l 286 (303)
-|--.--.+
T Consensus 186 pg~i~nRl~ 194 (292)
T PRK07530 186 PAFIVNRIL 194 (292)
T ss_pred CChHHHHHH
Confidence 654443333
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-13 Score=138.01 Aligned_cols=156 Identities=13% Similarity=0.187 Sum_probs=106.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|.||..||..+|.+ | ++|+++|++++.+++... ++...+ .+..+... +...
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~g~-~~~~----- 372 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLL-------NKQVERGK-IDGA----- 372 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCC-CChh-----
Confidence 47899999999999999999999 9 999999999988765331 111111 11111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+. +..+.+++.++|++ ++++||+||+|||+. .+++++.+|.+++++ ++++.|+|+++
T Consensus 373 -------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 431 (715)
T PRK11730 373 -------KM----------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTI 431 (715)
T ss_pred -------hH----------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 00 01124788999985 579999999999997 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEI 240 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev 240 (303)
+.+.+ ......|++++.-||..|.+ -+.++.|+.|..++
T Consensus 432 ~i~~l-a~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~ 473 (715)
T PRK11730 432 SISLL-AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDET 473 (715)
T ss_pred CHHHH-HhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHH
Confidence 87632 11234455566655544422 14566666665443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=118.95 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=120.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||.+||..|+.+ | ++|++|+++++.+++..+ . +... +.++.+.....+..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~----~~~~---~~~~~~~g~~~~~~----- 64 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-S----ISSS---LARLVKKGKMSQEE----- 64 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCCCCHHH-----
Confidence 46899999999999999999998 8 899999999987654321 1 1110 01111100000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--chhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. +..+..+.++++.+ ++++||+||+||| +..+..+++++.+++++ +++|+|.++|+
T Consensus 65 ---~---------------~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 65 ---A---------------DATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred ---H---------------HHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 00011355666664 6799999999999 66788899999998887 78888999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..+. ++. ...|..+... +....++.+ .+.+..+.++.+|..-|..+....|..
T Consensus 123 ~~~------------~l~~~~~~~~-r~~-g~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRPQ-QVI-GMHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCCc-ceE-EEeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 764 2445444321 222 2222222222 122223322 356678999999999898888777776
Q ss_pred HHHHHHHHHHHHHHH
Q 022050 279 THEVMGGLKNVYAIG 293 (303)
Q Consensus 279 g~e~~~~lkNv~Ai~ 293 (303)
|.-..-.+-.++.-+
T Consensus 187 g~i~nri~~~~~~ea 201 (295)
T PLN02545 187 GFIVNRILMPMINEA 201 (295)
T ss_pred cHHHHHHHHHHHHHH
Confidence 655544444444333
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=135.80 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=106.4
Q ss_pred CCceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..+||+|||+|.||+.||..++ .+ | ++|+++|++++.+++... .+...+ .+..+....-+.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l-------~~~~~~~~~~~~---- 364 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLL-------DKGVKRRHMTPA---- 364 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHH-------HHHHHcCCCCHH----
Confidence 3478999999999999999998 47 8 899999999987765331 111111 111111100000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
+ + +..+.+++.++|++ ++++||+||+|||+. .+++++.+|.+++++ ++++.|+|+
T Consensus 365 ---------~--~--------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS 421 (699)
T TIGR02440 365 ---------E--R--------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTS 421 (699)
T ss_pred ---------H--H--------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCC
Confidence 0 0 01123788899985 689999999999997 589999999999998 899999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+++.+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 422 ~l~i~~l-a~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~ 466 (699)
T TIGR02440 422 SLPIGQI-AAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTI 466 (699)
T ss_pred CCCHHHH-HHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHH
Confidence 9988642 11234555666656544432 245667777655443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.2e-12 Score=116.66 Aligned_cols=187 Identities=18% Similarity=0.123 Sum_probs=116.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||..+|..|+++ | ++|++||++++.++++..+. ....... .+.. .....
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~~-~~~~~~~-------~~~g-~~~~~------ 60 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQEI-ASIFEQG-------VARG-KLTEA------ 60 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHHH-HHHHHHH-------HHcC-CCCHH------
Confidence 6899999999999999999999 8 89999999999887654321 1111100 0000 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.. +..+.+++.++++++++++||+||+|+|+.. ++.++.++.+++++ ++++++.++++.
T Consensus 61 -~~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 61 -AR---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred -HH---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 00 0001257788899888999999999999985 67788999988887 777778887776
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEE-EEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~-v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
++ + +.+.+..+..... ....|- ..+....++.+ .+.+..+++..++..-+..++...|..
T Consensus 122 ~~-----------~-l~~~~~~~~r~~g~h~~~Pv-----~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 122 PT-----------E-IASFTKRPERVIAMHFFNPV-----HKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred HH-----------H-HHhhcCCcccEEEEecCCCc-----ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 64 2 4444432211111 111222 11222222222 256678888889988888777667755
Q ss_pred HHHHHHHHH
Q 022050 279 THEVMGGLK 287 (303)
Q Consensus 279 g~e~~~~lk 287 (303)
|.-+--.+-
T Consensus 185 Gf~~nRl~~ 193 (288)
T PRK09260 185 GFVTSRISA 193 (288)
T ss_pred cHHHHHHHH
Confidence 555444443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.3e-12 Score=116.66 Aligned_cols=180 Identities=13% Similarity=0.047 Sum_probs=113.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||.++|..|+++ | ++|.+|+|++++++++.+. +
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~~~------------------------g------- 43 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMKED------------------------R------- 43 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHc------------------------C-------
Confidence 6899999999999999999999 8 9999999999876542210 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~---~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.....++ .+.+..+|+||++||+..++++++++.+.+++ +.+||..+++.
T Consensus 44 ------------------------~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~ 96 (298)
T TIGR00872 44 ------------------------TTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSY 96 (298)
T ss_pred ------------------------CcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCC
Confidence 0011223 33346789999999999999999999999887 78888888776
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCe---EEEecC
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNG 275 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~---~~~~~~ 275 (303)
...+ .+...+.-... +..+..|-. +.....| + .+.++++.+..+.++.+|+.-+- .++...
T Consensus 97 ~~~t---------~~~~~~~~~~g---~~~vda~vsGg~~~a~~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G 162 (298)
T TIGR00872 97 YKDS---------LRRYKLLKEKG---IHLLDCGTSGGVWGRERG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCG 162 (298)
T ss_pred cccH---------HHHHHHHHhcC---CeEEecCCCCCHHHHhcC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEEC
Confidence 5432 11122211111 112222222 1111234 3 23456676667777777664332 234445
Q ss_pred ChhHHHHHHHHHHH--HHHHHHHHhhhc
Q 022050 276 DLVTHEVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 276 Di~g~e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
+.=.....+.+.|. ++..+.+++|+.
T Consensus 163 ~~G~~~~~K~~~n~l~~~~~~~~aE~~~ 190 (298)
T TIGR00872 163 PCGSGHFVKMVHNGIEYGMMAAIAEGFE 190 (298)
T ss_pred CccHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455788888885 444566666653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=134.03 Aligned_cols=158 Identities=15% Similarity=0.180 Sum_probs=111.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|+++|++++.+++... .+...+. +..+... +...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~-------~~~~~g~-~~~~---- 372 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLN-------KQVERGR-ITPA---- 372 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCC-CChh----
Confidence 457899999999999999999999 9 999999999988775431 1111111 1111110 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.+++.++|++ ++.+||+||+||++. .+++++.+|.+++++ ++++.|+|++
T Consensus 373 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~ 430 (714)
T TIGR02437 373 --------KM----------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTST 430 (714)
T ss_pred --------hH----------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 01123788889885 579999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.|+.|..++.
T Consensus 431 l~i~~i-a~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~ 474 (714)
T TIGR02437 431 ISISLL-AKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETI 474 (714)
T ss_pred CCHHHH-HhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHH
Confidence 998642 12345667777777755532 246777877766544
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=116.36 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=86.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++.||+|||+|.||..||..++.+ | ++|++||++++.+++... ++.+.+. ++.+... +...
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~-------~~~~~g~-~~~~---- 64 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLE-------RAVSRGK-LTER---- 64 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHH-------HHHhccc-CChh----
Confidence 346899999999999999999999 9 999999999998775331 1111111 1111110 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHh-hccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l-~~~~~~~iivs~~n 198 (303)
.. +..+.++++++|++ ++++||+||+|+|+. .+++++.++..++ ++ +++++|+++
T Consensus 65 ---~~---------------~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS 122 (286)
T PRK07819 65 ---ER---------------DAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTS 122 (286)
T ss_pred ---hH---------------HHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCC
Confidence 00 00123688889984 589999999999997 4788999999988 77 899999998
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
++...
T Consensus 123 ~~~~~ 127 (286)
T PRK07819 123 SIPIM 127 (286)
T ss_pred CCCHH
Confidence 88775
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=111.07 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=96.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||.|.||+.+|..|+++ | ++|++|+|++++.+++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEALAE-------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhhHH--------------------------------
Confidence 68999999999999999999999 8 899999999876543210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHH--HHHHhhccCCCCEEEEeecc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl~~--l~~~l~~~~~~~iivs~~nG 199 (303)
...+...++.++++++|+||+++|. .++++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 1355678899999999999999998 578999998 8888876 67776544 3
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
+.++. .+.+.+.+... .+..+..|-+ +.....|..+ +.++++.+..++++.+|+.-+-+++
T Consensus 96 ~~p~~---------~~~~~~~~~~~--g~~~vdapV~Gg~~~a~~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET---------SRELAERLAAK--GVRYVDAPVSGGPPGAEEGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH---------HHHHHHHHHHT--TEEEEEEEEESHHHHHHHTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh---------hhhhhhhhhhc--cceeeeeeeecccccccccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 34331 12344433211 1222222222 2223344322 3456777777888888775554444
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=116.50 Aligned_cols=173 Identities=16% Similarity=0.097 Sum_probs=115.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||.+++..|.+. |+ .. ..+.+|+|++++.+++. ..
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l~-------------------------~~------- 45 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARLA-------------------------ER------- 45 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHHH-------------------------HH-------
Confidence 6899999999999999999987 72 11 35688999876543211 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
+ .....+.++.++++++|+||++||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 46 --~-------------------~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 46 --F-------------------PKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred --c-------------------CCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 0 023455677777889999999999999999998873 344 68999988887764
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEec-C---ChhH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN-G---DLVT 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~-~---Di~g 279 (303)
.+++.++.. ...++.+|+++.....+.+. ++.+ .+.++++|+.-|-.++.. + |...
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~t~---~~~~---~~~~~~l~~~lG~~~~~~~e~~~d~~~ 159 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGVTA---IYPP---DPFVAALFDALGTAVECDSEEEYDLLA 159 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCCeE---ecCC---HHHHHHHHHhcCCcEEECChHhcccee
Confidence 467776532 23678999998876665422 2222 257778888777666543 2 2222
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022050 280 HEVMGGLKNVYAIGAGTIY 298 (303)
Q Consensus 280 ~e~~~~lkNv~Ai~~G~~~ 298 (303)
.- ++..-|+|.+...+.+
T Consensus 160 a~-~s~~a~~~~~~~~~~~ 177 (258)
T PRK06476 160 AA-SALMATYFGILETATG 177 (258)
T ss_pred eh-hccHHHHHHHHHHHHH
Confidence 22 2345666655544443
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=133.00 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=108.9
Q ss_pred CceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||+|.||+.||..++ .+ | ++|+++|++++.+++... . +.+. +.+..+... +...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~----~~~~---l~~~~~~~~-~~~~---- 369 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-Y----SWDL---LDKKVKRRH-LKPS---- 369 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHHcCC-CCHH----
Confidence 578999999999999999999 77 8 899999999987765321 1 1110 111111110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.++++++|++ ++++||+||+|||+. .+++++++|.+++++ ++++.|+|++
T Consensus 370 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 370 --------ER----------DKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred --------HH----------HHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00 01124788999984 689999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 428 l~i~~l-a~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~ 471 (708)
T PRK11154 428 LPIGQI-AAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471 (708)
T ss_pred CCHHHH-HHhcCcccceEEEecCCccccCceEEEECCCCCCHHHH
Confidence 998642 12234566666666655532 256778888866544
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=132.97 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=111.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|+++|++++.+++... ++.+.+. +..+.. .+...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~-------~~~~~g-~~~~~---- 394 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLN-------KKVKRK-KITSL---- 394 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHH-------HHHHcC-CCCHH----
Confidence 457899999999999999999999 9 999999999998876431 1111111 111110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+. +..+.+++.++|++ ++++||+||+||++. .+++++.+|.+++++ ++++.|+|++
T Consensus 395 --------~~----------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSs 452 (737)
T TIGR02441 395 --------ER----------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSA 452 (737)
T ss_pred --------HH----------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCC
Confidence 00 01123788889986 579999999999997 589999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
+..+.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 453 l~i~~l-a~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~ 496 (737)
T TIGR02441 453 LPIKDI-AAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTL 496 (737)
T ss_pred CCHHHH-HhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHH
Confidence 998642 12345667777777655532 256788888866654
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=114.20 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=117.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..|+++ | ++|++|+|++++.+.+. .
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~--------------------------~------- 41 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVAG--------------------------K------- 41 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH--------------------------H-------
Confidence 6899999999999999999998 8 89999999987654311 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.....+.++++++++ +|+||+++|.. .++++++.+.+.+++ ++++|.++..
T Consensus 42 ----------------------~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 42 ----------------------LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred ----------------------CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 023344566666655 69999999998 889999988887776 6777766533
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCe---EEEec
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDN 274 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~---~~~~~ 274 (303)
-... . +.+.+.+.... +..+..|-.-. ....|. .+.++++.+..++++.+|+.-+- +++..
T Consensus 97 ~~~~------~----~~~~~~~~~~g--~~~vdapV~G~~~~a~~g~--~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (299)
T PRK12490 97 RYKD------D----LRRAEELAERG--IHYVDCGTSGGVWGLRNGY--CLMVGGDKEIYDRLEPVFKALAPEGPGYVHA 162 (299)
T ss_pred Cchh------H----HHHHHHHHHcC--CeEEeCCCCCCHHHHhcCC--eEEecCCHHHHHHHHHHHHHhcCcCCcEEEE
Confidence 2222 1 11222221111 22333333322 222443 24456777777777777776554 45556
Q ss_pred CChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 275 GDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
.++-.....|.+-|.+ +...+++|++.
T Consensus 163 G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~ 191 (299)
T PRK12490 163 GPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191 (299)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888854 45566666654
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-11 Score=114.37 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=117.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||.++|..|+++ | ++|++|+|++++.+++..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~~~--------------------------------- 41 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEALAE--------------------------------- 41 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH---------------------------------
Confidence 6899999999999999999998 8 899999999876543110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.......++++.++. +|+||+++|.. .++++++.+.+.+++ ++++|..+++
T Consensus 42 ----------------------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 42 ----------------------EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred ----------------------CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 023344566666554 69999999997 789999988888877 7788877655
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCe----EEEe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWD 273 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~----~~~~ 273 (303)
-.... +.+.+.+-.. .+..+-.|..- .....| . .+.++++.+..++++.+|..-+- +++.
T Consensus 97 ~~~~~----------~~~~~~~~~~--g~~~~dapvsG~~~~a~~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~ 162 (301)
T PRK09599 97 YYKDD----------IRRAELLAEK--GIHFVDVGTSGGVWGLERG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLH 162 (301)
T ss_pred ChhHH----------HHHHHHHHHc--CCEEEeCCCCcCHHHHhcC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEe
Confidence 43321 1122222111 12223344332 222245 3 23456777777777777765554 4555
Q ss_pred cCChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 274 NGDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
..+.=.....+.+.|.+ +...++++++.
T Consensus 163 ~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~ 192 (301)
T PRK09599 163 AGPVGAGHFVKMVHNGIEYGMMQAYAEGFE 192 (301)
T ss_pred ECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666668888888874 44466666654
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=107.14 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=84.4
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (303)
|+|+|+|+||+.+|..|++. | ++|++++|++ +++.++++++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 8 9999999998 7765543331 111100 0000
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccc
Q 022050 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (303)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~ 205 (303)
+ .......+..+....+|+||+|||+.+.+++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 1 01222333323457899999999999999999999999998 78999999999875
Q ss_pred cccccCCHHHHHHhHhCC
Q 022050 206 AVPRIITPTQMINRATGV 223 (303)
Q Consensus 206 ~~~~~~~~~~~i~~~l~~ 223 (303)
+.+.++++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 567777754
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-11 Score=117.51 Aligned_cols=185 Identities=15% Similarity=0.125 Sum_probs=118.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..++ . | |+|++||+++++++++++.. .+.+.++++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~~g~-----------------~~~~e~~l~~---- 52 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLNDRI-----------------SPIVDKEIQQ---- 52 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHHcCC-----------------CCCCCcCHHH----
Confidence 69999999999999998887 5 7 89999999999887755321 1222232210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHHHhhccCCCCE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-----------~~~~vl~~l~~~l~~~~~~~i 192 (303)
.+.++ ...+..+++..+++++||+||++||.. +++++++.|.. +++ +++
T Consensus 53 -------~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 53 -------FLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred -------HHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 00000 014666777777889999999999964 56778888877 555 555
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcCCC
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~~g 268 (303)
|| ..+.+.+.+ .+.+.+.+.. ..+.++|.++.+... ..|..++.+.+++..+.+.++|....
T Consensus 113 VV-~~STv~pgt---------t~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF---------TAAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch---------HHHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 44 455555542 1223333311 134568888765432 11334455655666677777764322
Q ss_pred e--EEE-ecCChhHHHHHHHHHHHH
Q 022050 269 F--TVW-DNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 269 ~--~~~-~~~Di~g~e~~~~lkNv~ 290 (303)
+ .+. ...++...|+.|..-|.+
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~ 203 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY 203 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH
Confidence 1 122 468999999999999986
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=108.08 Aligned_cols=169 Identities=18% Similarity=0.213 Sum_probs=97.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.+|..+|..||++ | ++|+.+|.+++.++.+|... .|.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~l~~g~-----------------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEALNNGE-----------------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHHHHTTS-----------------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHHHhhcc-----------------ccccccchh-----
Confidence 8999999999999999999999 9 99999999999888765321 233333332
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
+++.+... -.++.+++|..+++.++|++|+|||.. ++.+++++|.+++.+ ++ +
T Consensus 53 ------~ll~~~~~-------~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~-l 115 (185)
T PF03721_consen 53 ------ELLKENVS-------AGRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GD-L 115 (185)
T ss_dssp ------HHHHHHHH-------TTSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CE-E
T ss_pred ------hhhccccc-------cccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cc-e
Confidence 11111110 037889999999899999999999753 588899999999887 54 4
Q ss_pred EEeeccCccccccccccC-CHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEe-CChhhHHHHHHH
Q 022050 194 ISLAKGVEAELEAVPRII-TPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKF 263 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~~~~~~i~~l 263 (303)
|.+-+.+.+.+ .. ....++.+..+.. ..+.+.+.|.+..+... ..+..++.+ .+....++++++
T Consensus 116 vV~~STvppGt-----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT-----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH-----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee-----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 55666666652 22 2223444433321 34677788888664321 123444554 344444466553
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-11 Score=110.69 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=113.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||+++|..|+++ | ++|++|+++++.++++... +... +...... .+....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~---l~~l~~~-g~~~~~----- 61 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGR---LEDLAAF-DLLDGE----- 61 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHH---HHHHHHc-CCCchh-----
Confidence 47999999999999999999999 9 8999999999877653321 1100 0000000 001000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. .+..+.++.+++|+.+++++||+|++++|+. .+..+++++..+.++ ++++.|.++++
T Consensus 62 --~---------------~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~ 121 (308)
T PRK06129 62 --A---------------PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL 121 (308)
T ss_pred --h---------------HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence 0 0011135778899988889999999999987 578888888887776 67777777765
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
... .+.+.+..+. ..+...|-.+.... ....++. ..+.+..+.+..++..-|.++... .|.
T Consensus 122 ~~~------------~la~~~~~~~--~~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~ 185 (308)
T PRK06129 122 LAS------------AFTEHLAGRE--RCLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREI 185 (308)
T ss_pred CHH------------HHHHhcCCcc--cEEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 442 2555554332 22333333321111 1112222 245667888999999888876654 566
Q ss_pred hHH
Q 022050 278 VTH 280 (303)
Q Consensus 278 ~g~ 280 (303)
.|.
T Consensus 186 ~G~ 188 (308)
T PRK06129 186 DGF 188 (308)
T ss_pred ccH
Confidence 664
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=113.94 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=117.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|+||.++|..|... | ++|++++++..+.... ...
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~~-------------------------A~~------ 59 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWKK-------------------------AEA------ 59 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHHH-------------------------HHH------
Confidence 37899999999999999999998 8 8998888775432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl-~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+.. .+..++++.||+|+++||+....+++ +++.+++++ +++| +.+.|+.
T Consensus 60 -----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~ 111 (330)
T PRK05479 60 -----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFN 111 (330)
T ss_pred -----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCC
Confidence 02323 36778899999999999999889998 789998887 6665 8999988
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-------HhccCceEEEEeCC--hhhHHHHHHHhcCCCe---
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPHF--- 269 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-------v~~g~~~~~~~~~~--~~~~~~i~~lf~~~g~--- 269 (303)
... ...+.+. . .-+++.+|+++.. .+.|.|+.+.+..+ .+..+.+..+|..-|-
T Consensus 112 i~~------------~~~~p~~-~-~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 112 IHF------------GQIVPPA-D-VDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred hhh------------ceeccCC-C-CcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 752 2233332 1 2367888999888 77787776544333 4456666677765443
Q ss_pred -------EEEecCChhHHH--HHHHHHHHHHHHHHH
Q 022050 270 -------TVWDNGDLVTHE--VMGGLKNVYAIGAGT 296 (303)
Q Consensus 270 -------~~~~~~Di~g~e--~~~~lkNv~Ai~~G~ 296 (303)
+-....|+.|.+ +||.+--.+..+.-+
T Consensus 178 g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~ 213 (330)
T PRK05479 178 GVIETTFKEETETDLFGEQAVLCGGLTELIKAGFET 213 (330)
T ss_pred ceeeeeecccccccchhhHHHHhhHHHHHHHHHHHH
Confidence 223346777653 455444454444433
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=120.20 Aligned_cols=197 Identities=16% Similarity=0.090 Sum_probs=128.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|++|..+|..||++ |. +++|+.+|.++++++++|..++ +.+.+++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g~---g~~V~gvD~~~~~v~~l~~g~~-----------------~~~e~gl~---- 55 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-CP---DIEVVVVDISVPRIDAWNSDQL-----------------PIYEPGLD---- 55 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC---CCeEEEEECCHHHHHHHHcCCC-----------------ccCCCCHH----
Confidence 58999999999999999999986 51 1679999999999988764431 11222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--ch-------------hHHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~~-------------~~~~vl~~l~~~l~~~ 187 (303)
+++.++. -.++.+++|..+++++||++|+||| .. ++.+++++|.+++++
T Consensus 56 -------ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 56 -------EVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred -------HHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 1111100 0248899999888999999999995 21 678899999999986
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEe-CCh----hhHH
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARIC-GAE----KWRK 258 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~----~~~~ 258 (303)
+++|| ..+.+.+. +...+.+.+.+... ...+.+.+.|.+..+... ..+..++++ .+. +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~~--g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNSK--GINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhCC--CCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 44445544 22233333333211 124678899999775432 113334444 322 2467
Q ss_pred HHHHHhcCCC-eEEEecCChhHHHHHHHHHHHH
Q 022050 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 259 ~i~~lf~~~g-~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++++.-. -..+...++..+|+.|..-|.|
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ 222 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF 222 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH
Confidence 7777776432 1345679999999999999987
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-11 Score=111.98 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=110.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||+++|..|.++ | ++|++|+++++.++++... +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~~~------------------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAIER------------------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHC------------------------CC------
Confidence 6899999999999999999998 8 8999999998765432100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
-...+++. +++++||+||+|+|+....++++++.+++++ +++ ++.+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~i-i~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EAI-VTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---CcE-EEeCcchHHH
Confidence 00122344 3578999999999999999999999998876 554 4555454432
Q ss_pred cccccccCCHHHHHHhHhCC--CCccEEEEeCCC-----cHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGV--PIENILYLGGPN-----IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~--~~~~~~v~~GP~-----~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
. .+.+.+.... ..|| +.||. .+. .+..+.+..++.. .+.+..+.++++++..|.+++.
T Consensus 97 ~---------~~~~~~~~~~~v~~HP---m~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~ 164 (279)
T PRK07417 97 I---------VEAWEKLHPRFVGSHP---MAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT 164 (279)
T ss_pred H---------HHHHHHhhCCceeeCC---cCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 1111121110 0112 12322 111 1345555444432 3456778899999999988876
Q ss_pred cCChhHHHHHHHHHHHHHHHH
Q 022050 274 NGDLVTHEVMGGLKNVYAIGA 294 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~Ai~~ 294 (303)
.+.-..-+..+..-|.-++.+
T Consensus 165 ~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 165 ADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred cCHHHHHHHHHHHcchHHHHH
Confidence 666666666666666555444
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-11 Score=117.86 Aligned_cols=194 Identities=12% Similarity=-0.038 Sum_probs=121.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||.|.||..+|..|+++ | ++|++||+++++++.++... .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l~~g~-----------------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTINRGE-----------------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHCCC-----------------CCcCCCCHH----
Confidence 48999999999999999999999 9 99999999999887654221 112222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHHHhhccCCCCE
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------~~~~~vl~~l~~~l~~~~~~~i 192 (303)
+.+.+... ...+.++++. ++||+||+|||. ..+.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~-------~g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVE-------GGYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhh-------cCceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 00000000 0135555543 479999999997 4788888999998887 665
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCC--------CCccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHH
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPL 260 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~--------~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i 260 (303)
|| ..+.+.+.+ .......+.+.-.. ....+.+.+.|.+..+... +.+..++.+.+.+..+++
T Consensus 115 VI-~~STv~pgt-----t~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~ 188 (415)
T PRK11064 115 VI-LESTSPVGA-----TEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGGMTPVCSARA 188 (415)
T ss_pred EE-EeCCCCCCH-----HHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEeCCHHHHHHH
Confidence 54 454555542 22233333332110 0113556778866543221 223333333366677788
Q ss_pred HHHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 261 AKFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 261 ~~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+.+|+.-+-..+...++...|.+|..-|.+
T Consensus 189 ~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~ 218 (415)
T PRK11064 189 SELYKIFLEGECVVTNSRTAEMCKLTENSF 218 (415)
T ss_pred HHHHHHhcCCCeeeCCHHHHHHHHHHHHHH
Confidence 888775443444566899999999999986
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=113.73 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=114.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|+||+|||+|.||.++|..|+++ | ++|++|+|++++.+.+...
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~~~------------------------------- 43 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALVDK------------------------------- 43 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHc-------------------------------
Confidence 36899999999999999999998 8 8999999998765432100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~n 198 (303)
....++++.++++++|+||+++|+. .+++++.. +.+.+++ ++++|.++.
T Consensus 44 ------------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT 96 (296)
T PRK15461 44 ------------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMST 96 (296)
T ss_pred ------------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCC
Confidence 1223456777889999999999998 47777643 4444555 677776654
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+-... .+.+.+.+.... +..+-.|-.- .....|..+ +..+++.+..++++.+|+.-+-+++...+
T Consensus 97 ~~p~~----------~~~l~~~l~~~g--~~~ldapV~g~~~~a~~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~ 163 (296)
T PRK15461 97 IHPLQ----------TDKLIADMQAKG--FSMMDVPVGRTSDNAITGTLL-LLAGGTAEQVERATPILMAMGNELINAGG 163 (296)
T ss_pred CCHHH----------HHHHHHHHHHcC--CcEEEccCCCCHHHHHhCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCC
Confidence 43322 122333221111 1122333321 112234322 23456777778888888776667777777
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHhhh
Q 022050 277 LVTHEVMGGLKNVYA--IGAGTIYFL 300 (303)
Q Consensus 277 i~g~e~~~~lkNv~A--i~~G~~~gl 300 (303)
.=.....+..-|.+. ...++++++
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~ 189 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAA 189 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766678888888653 234444443
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=106.70 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=111.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|+|+|+|+||+++|..|++. | |+|++-.|+.+...+.. .+ ++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a~--------a~-------------~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAAA--------AA-------------ALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHHH--------HH-------------hhc-------
Confidence 68999999999999999999999 8 99999866654322110 00 110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++. .++++|++.+|+||++||.....++++++...+. +++||+.+|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 12322 3466788999999999999999999999998776 4799999998642
Q ss_pred ----cc-ccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccC----ceEEEEeCC-hhhHHHHHHHhcCCCeE
Q 022050 203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKE----YANARICGA-EKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 203 ----~~-~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~----~~~~~~~~~-~~~~~~i~~lf~~~g~~ 270 (303)
.. ...+...+.+++++++++.. + ++...|+ +..+.... .+.+.+++| .+..+.+.++.+..||+
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--k--VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--K--VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--c--hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 11 11134556789999999753 2 3333444 22222211 122334554 45678888999988998
Q ss_pred EEe
Q 022050 271 VWD 273 (303)
Q Consensus 271 ~~~ 273 (303)
...
T Consensus 175 ~ld 177 (211)
T COG2085 175 PLD 177 (211)
T ss_pred eee
Confidence 764
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=111.06 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=109.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||..+|..|++. | ++|.+|+|++++.+++. .
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~~--------------------------~------ 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEVI--------------------------A------ 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH--------------------------H------
Confidence 37999999999999999999998 8 89999999987554211 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
.....+++++++++++|+||+++|.. .++.++ +.+.+.+.+ +++++.++
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~s- 96 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMS- 96 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECC-
Confidence 02334566778888999999999964 456665 446666666 67777554
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+.. .+.+.+.+.... +..+..|-+... ...+... ++.+++.+..+.+..+|..-+.++....+
T Consensus 97 t~~~~~---------~~~l~~~~~~~g--~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 97 SIAPLA---------SREIAAALKAKG--IEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred CCCHHH---------HHHHHHHHHHcC--CcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 333321 123333332111 123344433211 1123222 33456667778888888877766665556
Q ss_pred hhHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVY 290 (303)
Q Consensus 277 i~g~e~~~~lkNv~ 290 (303)
.-..+..|..-|.+
T Consensus 165 ~g~a~~~Kl~~n~~ 178 (296)
T PRK11559 165 IGAGNVTKLANQVI 178 (296)
T ss_pred cCHHHHHHHHHHHH
Confidence 66678888888854
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=118.89 Aligned_cols=121 Identities=22% Similarity=0.342 Sum_probs=85.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||+.||..++.+ | ++|++|+++++.+++... + ++.. +.+..+... +...
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~----i~~~---l~~~~~~G~-~~~~---- 64 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-G----IEAR---LNSLVTKGK-LTAE---- 64 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-H----HHHH---HHHHHhcCC-CCHH----
Confidence 357899999999999999999999 9 999999999998875431 1 1111 111111110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. + +..+.+++.++++++ +.+||+||+|||+. .++.++.++..++++ ++++.|++++
T Consensus 65 ---~--~-------------~~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTSt 122 (503)
T TIGR02279 65 ---E--C-------------ERTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSS 122 (503)
T ss_pred ---H--H-------------HHHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 0 0 011236888889865 67999999999985 578889999998888 7888889988
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
+..+
T Consensus 123 l~i~ 126 (503)
T TIGR02279 123 LSIT 126 (503)
T ss_pred CCHH
Confidence 8775
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-11 Score=108.79 Aligned_cols=182 Identities=14% Similarity=0.159 Sum_probs=109.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||+++|..|.++ |+ ..+|++|+|+++..+.... . +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~~~-----------------------~-g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKALE-----------------------L-G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHHHH-----------------------C-C-------
Confidence 6899999999999999999988 72 1378889998765442110 0 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
-.....++.++. ++|+||+|||+....++++++.+ +++ +++|+++ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123455544 59999999999999999999988 776 6777753 22211
Q ss_pred cccccccCCHHHHHHhHhCCC---CccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecC
Q 022050 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~---~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.+.+.+.+..+.. .+|+. ..+||..+. ...+|....++.. .+.+..+.+..+|+..|.+++..+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 11211 113343332 2445654433332 344567899999999998887766
Q ss_pred ChhHHHHHHHHHHH-HHHHHHHHh
Q 022050 276 DLVTHEVMGGLKNV-YAIGAGTIY 298 (303)
Q Consensus 276 Di~g~e~~~~lkNv-~Ai~~G~~~ 298 (303)
.-..-+..+..-|+ .+++.++++
T Consensus 168 ~~~hD~~~a~vs~lph~~a~~l~~ 191 (275)
T PRK08507 168 AKEHDLHAAYISHLPHIISFALAN 191 (275)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 65555555554443 233444433
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=113.80 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=107.7
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+||| +|.||.++|..|... | ++|++|+|+++...+.. ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~a-------------------------~~------ 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEVA-------------------------KE------ 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHHH-------------------------HH------
Confidence 7999998 799999999999998 8 89999999876542210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++..+++.++|+||+|+|.....++++++.+++++ +++|+++++.-.
T Consensus 44 -----------------------~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsSvK~- 96 (437)
T PRK08655 44 -----------------------LGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTSVKE- 96 (437)
T ss_pred -----------------------cCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEcccccH-
Confidence 02345567777889999999999999999999999998887 788877663211
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEE---EEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~---v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+.+.++++... .++ -+.||+.+ ...+....++.. .+.+..+.++++|+..|.+++..+.
T Consensus 97 ---------~~~~~l~~~~~~~~-~~V~~HPmaGp~~~--~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~ 163 (437)
T PRK08655 97 ---------RPVEAMEEYAPEGV-EILPTHPMFGPRTP--SLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSP 163 (437)
T ss_pred ---------HHHHHHHHhcCCCC-EEEEcCCCCCCCCc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 12344556554211 111 12356654 234443333332 2456789999999999999886543
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-11 Score=110.05 Aligned_cols=171 Identities=14% Similarity=0.131 Sum_probs=108.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||+|.||..+|..|+++ | ++|++|+|++++.+++.. .
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~~~------------------------~--------- 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADELLA------------------------A--------- 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH------------------------C---------
Confidence 699999999999999999998 8 899999999876543210 0
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeeccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+....++..+++++||+||+++|.. .+++++ +.+.+.+++ +++++.++ .+
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~s-t~ 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMS-SI 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECC-CC
Confidence 1122346677889999999999985 566665 335555555 67777544 33
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.+.. .+.+.+.+.... +..+..|-+..+.. .+.. .++.+++++..+.+..+|+.-+.+++.....-
T Consensus 96 ~~~~---------~~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE---------SKRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH---------HHHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 122333332111 22334554432222 2322 23445666777888888888777776665555
Q ss_pred HHHHHHHHHHHHHH
Q 022050 279 THEVMGGLKNVYAI 292 (303)
Q Consensus 279 g~e~~~~lkNv~Ai 292 (303)
..+.+++.-|.+..
T Consensus 164 ~a~~~Kl~~n~~~~ 177 (291)
T TIGR01505 164 DGQTCKVANQIIVA 177 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 56778888777654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.6e-11 Score=110.74 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=116.0
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCccc
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 127 (303)
|||.|.||.++|..|+++ | ++|++|+|++++.+.+..
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~------------------------------------- 37 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEAVA------------------------------------- 37 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-------------------------------------
Confidence 689999999999999998 8 899999999876543210
Q ss_pred chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHHHhhccCCCCEEEEeeccCccc
Q 022050 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl---~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.+...+.++.++++++|+||++||+ .++++++ +.+.+.+.+ ++++|.++ ++.++
T Consensus 38 ------------------~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 38 ------------------AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred ------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 0233456778888999999999998 5688888 677777766 67777665 76664
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+ ...+.+.+.+ .| ...+..|-.-.. ...|.. .+.++++.+..++++.+|+.-+-+++...+.-.-+
T Consensus 96 ~-----~~~~~~~~~~-~g-----~~~vdaPv~Gg~~~a~~g~l-~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~ 163 (288)
T TIGR01692 96 S-----ARKLAELAAA-HG-----AVFMDAPVSGGVGGARAGTL-TFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQ 163 (288)
T ss_pred H-----HHHHHHHHHH-cC-----CcEEECCCCCCHHHHhhCcE-EEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHH
Confidence 2 2223333322 12 123343433221 123322 22346666777888888887676666666667778
Q ss_pred HHHHHHHHHHH--HHHHHhhhc
Q 022050 282 VMGGLKNVYAI--GAGTIYFLV 301 (303)
Q Consensus 282 ~~~~lkNv~Ai--~~G~~~gl~ 301 (303)
..|..-|.+-- ..++.+++.
T Consensus 164 ~~Kl~~n~~~~~~~~~~~Ea~~ 185 (288)
T TIGR01692 164 AAKICNNMLLGISMIGTAEAMA 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999897432 235666553
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=115.73 Aligned_cols=187 Identities=15% Similarity=0.053 Sum_probs=119.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+++|+|||.|.||+++|..|+++ | ++|++|+|++++++.+++.+ .+ ++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~~~----------------~~----~g------ 48 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVKKA----------------KE----GN------ 48 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHhh----------------hh----cC------
Confidence 46899999999999999999999 9 99999999998776532110 00 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~---~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
..+..+.++++++. ++|+||++||+ ..++++++++.+++.+ +.+||...|
T Consensus 49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn 102 (470)
T PTZ00142 49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN 102 (470)
T ss_pred -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 02445677888775 58988888655 5799999999999987 789999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH-h-ccCceEEEEeCChhhHHHHHHHhcCCCeE------
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI-Y-NKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev-~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------ 270 (303)
+...++ . +...+..... +..+..|-.-.+. + .| + .+.++++.+..++++.+|..-+-+
T Consensus 103 ~~~~dt-----~----~r~~~l~~~G---i~fldapVSGG~~gA~~G-~-~lm~GG~~~a~~~~~piL~~ia~~~~~~~~ 168 (470)
T PTZ00142 103 EWYLNT-----E----RRIKRCEEKG---ILYLGMGVSGGEEGARYG-P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPC 168 (470)
T ss_pred CCHHHH-----H----HHHHHHHHcC---CeEEcCCCCCCHHHHhcC-C-EEEEeCCHHHHHHHHHHHHHHhhhcCCCCe
Confidence 876652 1 1122221111 1223333332221 2 34 3 345677777777777777765444
Q ss_pred EEecCChhHHHHHHHHHHHH--HHHHHHHhhhc
Q 022050 271 VWDNGDLVTHEVMGGLKNVY--AIGAGTIYFLV 301 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~--Ai~~G~~~gl~ 301 (303)
+.+..+.=.-...|.+-|.+ +....++|++.
T Consensus 169 ~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~ 201 (470)
T PTZ00142 169 VTYVGPGSSGHYVKMVHNGIEYGDMQLISESYK 201 (470)
T ss_pred EEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334433335667777754 55566666653
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=114.53 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..||..++.+ | ++|++||++++.+++... ++...+. +..+....-+..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~-------~~~~~G~~~~~~---- 67 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLA-------KLVEKGKLTAEQ---- 67 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHH-------HHHHcCCCCHHH----
Confidence 457899999999999999999999 9 999999999998876431 1111111 111111000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. +..+.+++.++++++ +.+||+||++||+. .++.++.++..++++ +++++|.+++
T Consensus 68 ----~---------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntSt 124 (507)
T PRK08268 68 ----A---------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSS 124 (507)
T ss_pred ----H---------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 011236888888865 67999999999996 467788889988887 7888889988
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
++++
T Consensus 125 l~i~ 128 (507)
T PRK08268 125 LSIT 128 (507)
T ss_pred CCHH
Confidence 8775
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=110.11 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=124.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....++|+|||.|.+|..+|..+|++ | ++|+.+|.++.+++.+|... +....+.+.
T Consensus 6 k~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~ln~G~-----------------~~i~e~~~~- 61 (436)
T COG0677 6 KNMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDKLNRGE-----------------SYIEEPDLD- 61 (436)
T ss_pred cCCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHHHhCCc-----------------ceeecCcHH-
Confidence 33458999999999999999999999 9 89999999999998766321 111111111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCC
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERIT 189 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~ 189 (303)
+++.+.+. ..++++|+|.++ ++.||++|+|||.. ++....+.|+++|++
T Consensus 62 ----------~~v~~~v~-------~g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k--- 120 (436)
T COG0677 62 ----------EVVKEAVE-------SGKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK--- 120 (436)
T ss_pred ----------HHHHHHHh-------cCCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---
Confidence 11111111 136899999987 56999999999883 688899999999997
Q ss_pred CCEEEEeeccCccccccccccCCHHHHHHhH-hCCC-CccEEEEe-----CCCcHHHHhccCceEEEEeC-ChhhHHHHH
Q 022050 190 VPVIISLAKGVEAELEAVPRIITPTQMINRA-TGVP-IENILYLG-----GPNIASEIYNKEYANARICG-AEKWRKPLA 261 (303)
Q Consensus 190 ~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~-l~~~-~~~~~v~~-----GP~~a~ev~~g~~~~~~~~~-~~~~~~~i~ 261 (303)
+..| .+-+.+.+. +++.+...+.+. .|-. ...+.+-. .|+....-.... .. ++++ +.+..+..+
T Consensus 121 G~LV-IlEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~-~k-VIgG~tp~~~e~a~ 192 (436)
T COG0677 121 GDLV-ILESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNN-PK-VIGGVTPKCAELAA 192 (436)
T ss_pred CCEE-EEecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcC-Cc-eeecCCHHHHHHHH
Confidence 5544 455555554 233333333332 1111 01233333 333322111111 11 3343 444556666
Q ss_pred HHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 262 ~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++---.....+|...+|+++.+.|+|
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~Kl~EN~f 221 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMVKLTENTF 221 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHHHHHhhhh
Confidence 66655444467789999999999999986
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=108.09 Aligned_cols=171 Identities=14% Similarity=0.095 Sum_probs=112.8
Q ss_pred CchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhh
Q 022050 23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (303)
...|.||+|= ..+...|||+|||+|.||.++|..|.+. | ++|++|++++.. +.
T Consensus 21 ~~~~~~~~~~-----~~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~--------------- 73 (304)
T PLN02256 21 FDYESRLQEE-----LEKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI--------------- 73 (304)
T ss_pred CChHhHHhHh-----hccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------------
Confidence 3446777763 2233568999999999999999999988 8 899999998631 10
Q ss_pred HHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHH-
Q 022050 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI- 180 (303)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l- 180 (303)
.... ++...++.++++ .++|+||+|||+..+.++++++
T Consensus 74 -----------a~~~-----------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~ 113 (304)
T PLN02256 74 -----------AAEL-----------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLP 113 (304)
T ss_pred -----------HHHc-----------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhh
Confidence 0000 123345666655 4799999999999999999998
Q ss_pred HHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEE-----e
Q 022050 181 SRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARI-----C 251 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~-----~ 251 (303)
.+++++ +++|+++.++-.. +.+.+.+.++.. . ..+...|.+..+... +.+.+... .
T Consensus 114 ~~~l~~---~~iviDv~SvK~~----------~~~~~~~~l~~~-~-~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~ 178 (304)
T PLN02256 114 LQRLKR---STLFVDVLSVKEF----------PKNLLLQVLPEE-F-DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDE 178 (304)
T ss_pred hhccCC---CCEEEecCCchHH----------HHHHHHHhCCCC-C-eEEecCCCCCCCCCccccCCCeEEEecceecCC
Confidence 566776 7888877752111 123466666432 1 256788888776542 22222111 1
Q ss_pred -CChhhHHHHHHHhcCCCeEEEecC
Q 022050 252 -GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 252 -~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.+.+..+.+.++|+..|.+++..+
T Consensus 179 ~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 179 GEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 133567889999998888887643
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=111.21 Aligned_cols=194 Identities=9% Similarity=0.087 Sum_probs=121.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||.|.||..+|..|+. | ++|+.||+++++++.++.. ..+.+.+.++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~--~-----~~V~g~D~~~~~ve~l~~G-----------------~~~~~e~~~~--- 57 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK--S-----RQVVGFDVNKKRILELKNG-----------------VDVNLETTEE--- 57 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc--C-----CEEEEEeCCHHHHHHHHCc-----------------CCCCCCCCHH---
Confidence 45999999999999999999876 4 8999999999988875521 1122222221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ 191 (303)
++.. ...+.++++.+ ++++||++|+|||.. ++....+.|.+++++ ++
T Consensus 58 --------~l~~-----------~g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g~ 114 (425)
T PRK15182 58 --------ELRE-----------ARYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---GD 114 (425)
T ss_pred --------HHHh-----------hCCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---CC
Confidence 1100 02466777765 578999999999853 455556778888876 56
Q ss_pred EEEEeeccCccccccccccC-CHHHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhc
Q 022050 192 VIISLAKGVEAELEAVPRII-TPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLR 265 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~-~~~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~ 265 (303)
+|| ..+.+.+.+ .. ....++.+..|.. ...+.+.+.|.+..+... +.+..++.+.++...+.+..+++
T Consensus 115 lVI-~~STv~pgt-----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~ 188 (425)
T PRK15182 115 IVV-YESTVYPGC-----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQ 188 (425)
T ss_pred EEE-EecCCCCcc-----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHH
Confidence 544 555666652 11 1223333322211 113456677777654432 12233444555555566777766
Q ss_pred CCC-eEEEecCChhHHHHHHHHHHHHH
Q 022050 266 RPH-FTVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 266 ~~g-~~~~~~~Di~g~e~~~~lkNv~A 291 (303)
.-. ...+...++...|+.|.+-|.+-
T Consensus 189 ~~~~~~~~~~~~~~~AE~~Kl~~N~~~ 215 (425)
T PRK15182 189 QIISAGTYKAESIKVAEAAKVIENTQR 215 (425)
T ss_pred HHhhcCcEEecCHHHHHHHHHHHHHHH
Confidence 432 22456778999999999999874
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.5e-10 Score=103.65 Aligned_cols=165 Identities=21% Similarity=0.157 Sum_probs=102.1
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....+||+|||+|.||.++|..|.+. |. .++|++|+|++++.+.+.. . +.
T Consensus 3 ~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a~~-----------------------~-g~-- 52 (307)
T PRK07502 3 APLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARARE-----------------------L-GL-- 52 (307)
T ss_pred ccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHHHh-----------------------C-CC--
Confidence 33458999999999999999999988 71 1389999999875542110 0 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....+.++.+++++||+||+|+|+....++++++.+++++ +++|+. ..+
T Consensus 53 ---------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~d-vgs 101 (307)
T PRK07502 53 ---------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVTD-VGS 101 (307)
T ss_pred ---------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEEe-Ccc
Confidence 1123345666788999999999999999999999888876 665543 333
Q ss_pred CccccccccccCCHHHHHHhHhCCC-----CccEE--EEeCCCcH-HHHhccCceEEEE--eCChhhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIA-SEIYNKEYANARI--CGAEKWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~--v~~GP~~a-~ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~ 269 (303)
+... ..+.+.+.++.. .+|+. ..+||..+ .++..|.+..++. ..+.+..+.+.++|+..|.
T Consensus 102 ~k~~---------~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~ 172 (307)
T PRK07502 102 VKAS---------VIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGA 172 (307)
T ss_pred chHH---------HHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 3221 112233333211 11211 11233322 1344554443333 2345577889999999998
Q ss_pred EEEec
Q 022050 270 TVWDN 274 (303)
Q Consensus 270 ~~~~~ 274 (303)
+++..
T Consensus 173 ~~~~~ 177 (307)
T PRK07502 173 RVEEM 177 (307)
T ss_pred EEEEc
Confidence 88764
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.5e-10 Score=105.85 Aligned_cols=178 Identities=14% Similarity=0.076 Sum_probs=113.5
Q ss_pred ceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 44 ~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
|||.|.|+|+ -|+++|..|+++ | ++|++|+|+++.++. .+ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~----~~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---EL----WK----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HH----HH-----
Confidence 7888888886 388899999999 8 999999999875431 00 00
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~~l~~ 182 (303)
.+.. .++++++|..+++++||+||+++|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0000 145667788888899999999999998 8999999999
Q ss_pred HhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCC--------CccEEEEeCCCcHHHHhccCceEEEEeCCh
Q 022050 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~--------~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~ 254 (303)
.+++ +++|++++++ .+. ..++.+.+.++.+ .++..+..+|++...+..|.++......++
T Consensus 105 ~L~~---g~IVId~ST~-~~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTV-SPV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCC-CHH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8887 7777765544 322 1223454554311 012223334444443333332211223456
Q ss_pred hhHHHHHHHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 255 ~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+..++++.+|+..|.+++..+ .--....+.+-|++
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~~n~l 207 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP-ADVVSAVADMGSLV 207 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHHHHHH
Confidence 678999999999999887665 33334444455544
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-12 Score=113.39 Aligned_cols=160 Identities=21% Similarity=0.321 Sum_probs=116.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhh-----hcccchh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIR-----RCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~-----~~~~l~~ 116 (303)
.+++|+|||+|.||+.||+..|.. | ++|.++|++++.+.+..+ .|.+. +++... ++..+.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-----~I~~s---l~rvakKk~~~~~~~~~- 74 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-----AISSS---LKRVAKKKKADDPVALE- 74 (298)
T ss_pred cccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-----HHHHH---HHHHHhhcccCChhhHH-
Confidence 457899999999999999999999 9 999999999988876441 23322 222111 111111
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEE
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
|.+ +..+..++.++|..+++.++|+||+|+-+. .++.++++|...+++ ++++.
T Consensus 75 -------------e~v---------~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~ 129 (298)
T KOG2304|consen 75 -------------EFV---------DDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILA 129 (298)
T ss_pred -------------HHH---------HHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEe
Confidence 111 112346888899999999999999999875 588999999999887 89999
Q ss_pred EeeccCccccccccccCCHHHHHHhHhCCCC---ccEEEEeCCCcHHHHhc
Q 022050 195 SLAKGVEAELEAVPRIITPTQMINRATGVPI---ENILYLGGPNIASEIYN 242 (303)
Q Consensus 195 s~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~v~~GP~~a~ev~~ 242 (303)
++++.+..... ......++++..-||..|. .-+.++.++.+..+...
T Consensus 130 tNTSSl~lt~i-a~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~ 179 (298)
T KOG2304|consen 130 TNTSSLSLTDI-ASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFN 179 (298)
T ss_pred ecccceeHHHH-HhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHH
Confidence 99998887542 2346678888887876552 11468889998877653
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-10 Score=102.78 Aligned_cols=114 Identities=22% Similarity=0.177 Sum_probs=89.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 148 i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+..+.++.++++++|+||+|||++.++++++++.+.+.+ +++|||+++|+..+ .+.++++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 445567777788999999999999999999999987765 68999999999885 377778632 2
Q ss_pred EEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 228 ILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 228 ~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
..++.+||++..+++|...+... ..+.+..+.+.++|+..|...++.++.+
T Consensus 94 ~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~ 145 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALM 145 (245)
T ss_pred eEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHc
Confidence 47899999999999886433221 1234577899999999999888876654
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=105.46 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=102.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||++||..|.++ | ++|.+|+++++..+... . .+.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~~~---------a---------------~~~------ 44 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQLAR---------A---------------LGF------ 44 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHHHH---------H---------------hcC------
Confidence 4799999999999999999998 8 89999999886432100 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~~ 202 (303)
.. ....++++.+++++||+||+|||++.+.++++++.+. +++ ++ +++...++..
T Consensus 45 -~~--------------------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 45 -GV--------------------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred -CC--------------------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 00 0123456777889999999999999999999999873 665 54 4444444433
Q ss_pred ccccccccCCHHHHHHhHhCCC-----CccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEE
Q 022050 203 ELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~-----~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~ 272 (303)
. +.+.+.+.++.. .||+. ..+||..+. ++..+.++.++.. .+.+..+.++++|+..|.+++
T Consensus 100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v 170 (359)
T PRK06545 100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV 170 (359)
T ss_pred H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 112233332211 12211 123333333 4556665554443 345678899999999998886
Q ss_pred ec
Q 022050 273 DN 274 (303)
Q Consensus 273 ~~ 274 (303)
..
T Consensus 171 ~~ 172 (359)
T PRK06545 171 VL 172 (359)
T ss_pred EC
Confidence 43
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=108.78 Aligned_cols=191 Identities=17% Similarity=0.084 Sum_probs=119.8
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....+++|+|||.|.||..+|..|+++ | ++|++|+|++++.+.+.+.+ ...+.
T Consensus 2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~~~~--------------------~~~Ga- 54 (493)
T PLN02350 2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETVERA--------------------KKEGN- 54 (493)
T ss_pred CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHhh--------------------hhcCC-
Confidence 345678999999999999999999999 9 99999999988765422100 00000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+....+++++++. +|+||++||.. .++++++.+.+.+.+ +.++|
T Consensus 55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI 104 (493)
T PLN02350 55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII 104 (493)
T ss_pred ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence 012344567777665 99999999986 678898888888877 78888
Q ss_pred EeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCe---
Q 022050 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHF--- 269 (303)
Q Consensus 195 s~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~--- 269 (303)
...+.-...+ +.+.+.+-.. .+..+..|-.-.+ .+ .| + .+.++++.+..++++.+|+.-+-
T Consensus 105 D~sT~~~~~t----------~~~~~~l~~~--Gi~fldapVSGG~~gA~~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~ 170 (493)
T PLN02350 105 DGGNEWYENT----------ERRIKEAAEK--GLLYLGMGVSGGEEGARNG-P-SLMPGGSFEAYKNIEDILEKVAAQVD 170 (493)
T ss_pred ECCCCCHHHH----------HHHHHHHHHc--CCeEEeCCCcCCHHHhcCC-C-eEEecCCHHHHHHHHHHHHHHhhhcC
Confidence 7765433321 1122222111 1223333333222 22 34 3 34567777777888888775442
Q ss_pred ---EEEecCChhHHHHHHHHHHH--HHHHHHHHhhh
Q 022050 270 ---TVWDNGDLVTHEVMGGLKNV--YAIGAGTIYFL 300 (303)
Q Consensus 270 ---~~~~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl 300 (303)
.+....+.=.-...+..-|. |+...+++|++
T Consensus 171 ~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~ 206 (493)
T PLN02350 171 DGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAY 206 (493)
T ss_pred CCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444555455677777784 45555565554
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-09 Score=100.25 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=116.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||++||.|.||..+|..|.++ | |+|++|+|++++.... +..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~~-------------------------~~~------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAEL-------------------------LAA------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhHH-------------------------HHH-------
Confidence 6899999999999999999999 9 9999999999863210 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH---HHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE---EISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~---~l~~~l~~~~~~~iivs~~nG 199 (303)
.......++.++++++|+||.+||.. ++++++- .+...+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 02334566778899999999999886 6888884 46666666 77777554 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
++++. .+.+.+.+-.. ....+-.|-.-.... .|.. .+.++++.+..++++.+|+.-+-+++..-+.
T Consensus 97 isp~~---------a~~~a~~~~~~--G~~~lDAPVsGg~~~A~~GtL-timvGG~~~~f~r~~pvl~~~g~~i~~~G~~ 164 (286)
T COG2084 97 ISPET---------ARELAAALAAK--GLEFLDAPVSGGVPGAAAGTL-TIMVGGDAEAFERAKPVLEAMGKNIVHVGPV 164 (286)
T ss_pred CCHHH---------HHHHHHHHHhc--CCcEEecCccCCchhhhhCce-EEEeCCCHHHHHHHHHHHHHhcCceEEECCC
Confidence 45431 12233322110 012233333322222 2321 2334678888999999999989888887777
Q ss_pred hHHHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVYAI 292 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai 292 (303)
=.-+..|..-|++..
T Consensus 165 G~G~~~Kl~nn~l~~ 179 (286)
T COG2084 165 GAGQAAKLANNILLA 179 (286)
T ss_pred CchHHHHHHHHHHHH
Confidence 667888888888754
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=100.27 Aligned_cols=179 Identities=14% Similarity=0.078 Sum_probs=107.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.||.++|..|.++ | ++|++|+|++. .+++ ..
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~~--------------------------~~------- 40 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADEL--------------------------LS------- 40 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHHH--------------------------HH-------
Confidence 6899999999999999999999 8 89999999863 2210 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~nG 199 (303)
.......++.++++++|+||++||.. .+++++.. +...+.+ ++++|.++ +
T Consensus 41 ----------------------~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 41 ----------------------LGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 01223456777788999999999986 56776632 3333444 66666544 4
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+.+.+ .+.+.+.+.... ...+..|-.-.... .|... +.++++.+..++++.+|+.-+-+++.-.+.
T Consensus 95 ~~p~~---------~~~~~~~~~~~G--~~~vdaPVsGg~~~a~~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~ 162 (292)
T PRK15059 95 ISPIE---------TKRFARQVNELG--GDYLDAPVSGGEIGAREGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN 162 (292)
T ss_pred CCHHH---------HHHHHHHHHHcC--CCEEEecCCCCHHHHhcCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc
Confidence 44431 122222221111 11223343322221 33322 234667777888888888766666555665
Q ss_pred hHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 278 VTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
=..+..|.+-|.+.- ..++.|++
T Consensus 163 G~g~~~Kl~~N~l~~~~~~a~~Ea~ 187 (292)
T PRK15059 163 GDGQTCKVANQIIVALNIEAVSEAL 187 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666687753 23555554
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=106.67 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=114.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
+|+|||.|.||.++|..|+++ | ++|++|+|++++++.+.++ +..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~~~---------------------~~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFLAE---------------------HAKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHhh---------------------ccCC--------
Confidence 489999999999999999999 9 8999999999876542210 0000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~---~~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+....++++.+ +.+|+||++||+ ..++++++++.+++.+ +.+||...|+.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455543 568999999999 6899999999999887 78999888765
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCeE------EE
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHFT------VW 272 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------~~ 272 (303)
...+ .+...+..... +..+.+|-.-.. .+ .| + .+.++++.+..++++.+|..-+-+ +.
T Consensus 102 ~~~t---------~~~~~~l~~~g---i~fvdapVsGG~~gA~~G-~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~~~~ 167 (467)
T TIGR00873 102 YPDT---------ERRYKELKAKG---ILFVGSGVSGGEEGARKG-P-SIMPGGSAEAWPLVAPIFQKIAAKVDGEPCCT 167 (467)
T ss_pred HHHH---------HHHHHHHHhcC---CEEEcCCCCCCHHHHhcC-C-cCCCCCCHHHHHHHHHHHHHHhhhcCCCCceE
Confidence 5432 11122222111 223333333222 22 34 3 234567777777777777754433 12
Q ss_pred ecCChhHHHHHHHHHHH--HHHHHHHHhhhc
Q 022050 273 DNGDLVTHEVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
+..+.=.-...|..-|. |+...+++|++.
T Consensus 168 ~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ 198 (467)
T TIGR00873 168 WIGPDGAGHYVKMVHNGIEYGDMQLICEAYD 198 (467)
T ss_pred EECCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333445666777774 455566666653
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-09 Score=109.24 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=101.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.+++..+... |+ .++|++|++++++++...+ . +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a~~-----------------------~-g~----- 49 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELAVS-----------------------L-GV----- 49 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHHHH-----------------------C-CC-----
Confidence 37899999999999999999988 71 1479999999876542110 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.....++..++++++|+||+|||++.++++++++.+++++ ++ +++...++..
T Consensus 50 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~ 101 (735)
T PRK14806 50 ------------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKG 101 (735)
T ss_pred ------------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCch
Confidence 0112345667788999999999999999999999998876 54 4555545442
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH-------------HHhccCceEEEEe--CChhhHHHHHHHhcCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRP 267 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~-------------ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~ 267 (303)
. +.+.+.+.++.. .++.+|+++- +...+.++.++.. .+.+..+.+.++|+..
T Consensus 102 ~---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 168 (735)
T PRK14806 102 N---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAV 168 (735)
T ss_pred H---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 2 123355555321 1234445542 2223333333332 3445678899999999
Q ss_pred CeEEEec
Q 022050 268 HFTVWDN 274 (303)
Q Consensus 268 g~~~~~~ 274 (303)
|-+++..
T Consensus 169 G~~~~~~ 175 (735)
T PRK14806 169 GADVLHM 175 (735)
T ss_pred CCEEEEc
Confidence 9766554
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=98.63 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=117.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|++++||+|.|..+++..+... |...+ .++..+..++..... .+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~~-------------------------~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLGL-------------------------MFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhhh-------------------------hhhc-------
Confidence 6899999999999999999888 85554 455555553321110 0111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
...+.+.+..+.++.+|+++++||++.+.+++.++...+.. +.+++|...|+..+
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 12333334466788999999999999999999998876554 67999999999875
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
. +...++.+ .-+++.+||++..+..|...+..-+ ...++.+.++++|+..|+...+.++.+
T Consensus 102 ~------------l~~~l~~~--~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~i 163 (267)
T KOG3124|consen 102 S------------LESKLSPP--TRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCI 163 (267)
T ss_pred H------------HHHhcCCC--CceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhh
Confidence 2 56666622 2368999999999999875433222 234577999999999999888877654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.9e-09 Score=113.25 Aligned_cols=189 Identities=13% Similarity=0.029 Sum_probs=119.0
Q ss_pred ccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 37 ~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
.|..+.++||+|||.|+||.++|..|+.. | ++|++|+|++++++.+. .
T Consensus 318 ~~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~--------------------------~ 365 (1378)
T PLN02858 318 TMQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRFE--------------------------N 365 (1378)
T ss_pred hccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH--------------------------H
Confidence 34444668999999999999999999998 8 89999999987654311 0
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHH---HHHHHhhccCCCCE
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPV 192 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl~---~l~~~l~~~~~~~i 192 (303)
. ......++.+++++||+||++|| +..+++++. .+.+.+.+ +++
T Consensus 366 ~-----------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~i 413 (1378)
T PLN02858 366 A-----------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GAS 413 (1378)
T ss_pred c-----------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCE
Confidence 0 12234567788899999999999 677888873 34444555 666
Q ss_pred EEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeE
Q 022050 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 193 ivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~ 270 (303)
+|.++ .+.+.+ .+.+.+.+....+.+..+..|-.-. ....|... ++++++.+..+++..+|+.-+-+
T Consensus 414 vVd~S-TvsP~~---------~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~-imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 414 IVLSS-TVSPGF---------VIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLT-IMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred EEECC-CCCHHH---------HHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCce-EEEECCHHHHHHHHHHHHHHhCc
Confidence 66544 344431 1223332211001123444443321 22234322 34466777778888888766666
Q ss_pred EEe-cCChhHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 271 VWD-NGDLVTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 271 ~~~-~~Di~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
++. ..++-..+..|++-|.+.- .+++++++
T Consensus 483 i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal 515 (1378)
T PLN02858 483 LYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAM 515 (1378)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 5777778999999888643 45555554
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=94.96 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=110.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+++|+|+|.|.||..||..|.++ | +.|.+++++...... ... ..+ +.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l-gv---- 49 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL-GV---- 49 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-Cc----
Confidence 358999999999999999999999 8 888888887753211 000 001 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~-~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
....+.+. .++..++|+||+|||-..+.++++++.+++++ +++|..+++--
T Consensus 50 -------------------------~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~S~K 101 (279)
T COG0287 50 -------------------------IDELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVGSVK 101 (279)
T ss_pred -------------------------ccccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEeccccc
Confidence 01122232 45677899999999999999999999998888 78876554221
Q ss_pred ccccccccccCCHHHHHHhHhCCC-----CccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEe
Q 022050 201 EAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~-----~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~ 273 (303)
. .+-+.+.++.+.. .|| +.||.--.....+....++... +.+..+.+.+++...|-+++.
T Consensus 102 ~----------~v~~a~~~~~~~~~~~vg~HP---M~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 102 S----------SVVEAMEKYLPGDVRFVGGHP---MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred H----------HHHHHHHHhccCCCeeEecCC---CCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1 1223344444321 123 2555411233344433333332 345789999999998888876
Q ss_pred cCChhHHHH---HHHHHHHHHHHHH
Q 022050 274 NGDLVTHEV---MGGLKNVYAIGAG 295 (303)
Q Consensus 274 ~~Di~g~e~---~~~lkNv~Ai~~G 295 (303)
.+--..-.. --.|=-++|++.+
T Consensus 169 ~~~eeHD~~~a~vshLpH~~a~al~ 193 (279)
T COG0287 169 MDAEEHDRVMAAVSHLPHAAALALA 193 (279)
T ss_pred cChHHHhHHHHHHHHHHHHHHHHHH
Confidence 543333332 2334444544443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=98.95 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=93.3
Q ss_pred CCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+||| +|.||..+|..|.++ | ++|++|++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 458999999 999999999999998 8 89999998531
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
++.++++.+||+||+|||.....++++++.+ +++ +++|+.+++-
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~Sv- 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLTSV- 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECCCc-
Confidence 0123456789999999999999999999988 777 7888766421
Q ss_pred ccccccccccCCHHHHHHhHhCCC---CccEEEEeCCCcHHHHhccCceEEEEe-C-ChhhHHHHHHHhcCCCeEEEecC
Q 022050 201 EAELEAVPRIITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARIC-G-AEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~v~~GP~~a~ev~~g~~~~~~~~-~-~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
-. .+.+.+.+..+.+ .|| +.||.... ..+.. ++.+ . +.+..+.+.++++..|.+++..+
T Consensus 178 K~---------~~~~~~~~~~~~~fvg~HP---m~G~~~~~--~~~~~--vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~ 241 (374)
T PRK11199 178 KN---------APLQAMLAAHSGPVLGLHP---MFGPDVGS--LAKQV--VVVCDGRQPEAYQWLLEQIQVWGARLHRIS 241 (374)
T ss_pred cH---------HHHHHHHHhCCCCEEeeCC---CCCCCCcc--cCCCE--EEEcCCCCchHHHHHHHHHHHCCCEEEECC
Confidence 11 1122233333211 122 35554421 22321 2222 2 34567888999999998887654
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=96.83 Aligned_cols=186 Identities=16% Similarity=0.061 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhh--hhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA--EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEI 131 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~--~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 131 (303)
||+.||..++.+ | ++|+++|++++..+++++ +...+.+... +.+..+....-.. +.
T Consensus 1 MG~giA~~~a~~-G-----~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~g~~~~~-------------~~ 58 (314)
T PRK08269 1 MGQGIALAFAFA-G-----HDVTLIDFKPRDAAGWRALDAEARAEIERT---LAALVALGRIDAA-------------QA 58 (314)
T ss_pred CcHHHHHHHHhC-C-----CeEEEEeCCcccchhhHHHHHHHHHHHHHH---HHHHHHcCCCChh-------------hH
Confidence 799999999999 9 999999999964321100 0000011110 1111111110000 00
Q ss_pred hhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccc
Q 022050 132 LKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207 (303)
Q Consensus 132 ~~~~~~~~~~~~~~~~i~~t~d--~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~ 207 (303)
+..+.+++++++ ..+++++||+||++||+. .++.++.+|.+.+++ ++++.|+++++....+ .
T Consensus 59 ----------~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~~l-a 124 (314)
T PRK08269 59 ----------DAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVTDL-Q 124 (314)
T ss_pred ----------HHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHHHH-H
Confidence 011236777754 667889999999999997 578899999999998 8999999988877521 0
Q ss_pred cccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHHHHH
Q 022050 208 PRIITPTQMINRATGVPIE---NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMG 284 (303)
Q Consensus 208 ~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~ 284 (303)
.....+++++.-||..|.+ -+.++.||.+ +.+..+.+..++..-|..++...|.-|.-+..
T Consensus 125 ~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t----------------~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~nr 188 (314)
T PRK08269 125 RHVAHPERFLNAHWLNPAYLMPLVEVSPSDAT----------------DPAVVDRLAALLERIGKVPVVCGPSPGYIVPR 188 (314)
T ss_pred hhcCCcccEEEEecCCccccCceEEEeCCCCC----------------CHHHHHHHHHHHHHcCCcEEEecCCCCcchHH
Confidence 1122233333333322211 1233333332 34455666666666666655555655654444
Q ss_pred HHHHHHH
Q 022050 285 GLKNVYA 291 (303)
Q Consensus 285 ~lkNv~A 291 (303)
.+-..++
T Consensus 189 i~~~~l~ 195 (314)
T PRK08269 189 IQALAMN 195 (314)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=102.47 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=100.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|.||..+|..|.+. | ++|.+|+|+... +. ....
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------a~~~---- 410 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE--------------------------AQKL---- 410 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH--------------------------HHHc----
Confidence 458999999999999999999988 8 899999998532 11 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~-~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nG 199 (303)
.+...+++++++. .+|+||+|||...+.++++++.. .+++ +++|++++++
T Consensus 411 -------------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv 462 (667)
T PLN02712 411 -------------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV 462 (667)
T ss_pred -------------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence 2234466777554 58999999999999999999875 4666 7888887644
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh-cc---CceE---EEEeCC---hhhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY-NK---EYAN---ARICGA---EKWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~-~g---~~~~---~~~~~~---~~~~~~i~~lf~~~g~ 269 (303)
-.. +.+.+.++++... -.+...|.+..+.. .| .+.. .....+ .+..+.+.++|...|-
T Consensus 463 K~~----------~~~~~~~~l~~~~--~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 463 KEF----------PRNLFLQHLPQDF--DILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred cHH----------HHHHHHHhccCCC--ceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence 211 2244555554321 13445666655443 12 1110 112222 2345667789988888
Q ss_pred EEEec
Q 022050 270 TVWDN 274 (303)
Q Consensus 270 ~~~~~ 274 (303)
+++..
T Consensus 531 ~vv~m 535 (667)
T PLN02712 531 RMVEM 535 (667)
T ss_pred EEEEe
Confidence 77653
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=92.92 Aligned_cols=195 Identities=14% Similarity=0.120 Sum_probs=125.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+.||||.+|+.-...+|.. ++...|+++|.+..++.+||.+. .|.|.+++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 57999999999999999888876 34478999999999999888654 367877763
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------hhHHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~---------------~~~~~vl~~l~~~l~~~ 187 (303)
|++.. +.+ .++.+++|.++++.++|+||+.|.. .+.+...+.|+.+-..
T Consensus 56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 22221 111 3688999999999999999998833 2567777777776554
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCC--CCccEEEEeCCCcHHHHhc----cCceEEEEeCCh-----hh
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV--PIENILYLGGPNIASEIYN----KEYANARICGAE-----KW 256 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~-----~~ 256 (303)
+++++ --+.++. ...+-|...+.. +...+-+++.|.|..|... -.|..+.+++.+ +.
T Consensus 120 --~kivv-ekstvpv---------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIVV-EKSTVPV---------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEEE-eeccccc---------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 45544 2222222 123445555532 2234679999999776432 123344554322 23
Q ss_pred HHHHHHHhcCC-CeEEEecCChhHHHHHHHHHHHH
Q 022050 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 257 ~~~i~~lf~~~-g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.+.+..++.+= .-.-.++.+.-..|+++...|.+
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaanaf 222 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANAF 222 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHHH
Confidence 45555555431 11223466777889999888865
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.1e-09 Score=86.48 Aligned_cols=97 Identities=26% Similarity=0.478 Sum_probs=60.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEE-EecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
...+||+|||+|.+|..++..|.++ | +.|.. +.|+.++.++.. ..+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a~----------------------~~~~---- 55 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERAA----------------------AFIG---- 55 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHHH----------------------C--T----
T ss_pred CCccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCcccccccc----------------------cccc----
Confidence 3459999999999999999999999 8 77765 567765443211 0111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH--hhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~--l~~~~~~~iivs~~ 197 (303)
...+ .++.+.++++|++|++||...+.+++++|..+ +.+ +++|+.++
T Consensus 56 ---------------------------~~~~-~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 56 ---------------------------AGAI-LDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp ---------------------------T------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred ---------------------------cccc-cccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 1112 34556788999999999999999999999976 555 67777665
Q ss_pred ccC
Q 022050 198 KGV 200 (303)
Q Consensus 198 nGi 200 (303)
-.+
T Consensus 105 Ga~ 107 (127)
T PF10727_consen 105 GAL 107 (127)
T ss_dssp SS-
T ss_pred CCC
Confidence 333
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=98.56 Aligned_cols=157 Identities=13% Similarity=0.180 Sum_probs=98.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||..+|..|.+. | ++|++|+|+... +. ...+
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~--------------------------A~~~---- 93 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA--------------------------ARSL---- 93 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH--------------------------HHHc----
Confidence 358999999999999999999998 8 899999998432 10 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHH-HHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~-~~l~~~~~~~iivs~~nG 199 (303)
++...+++.+++ +++|+||+|||...+.++++++. +++++ +++|+.+. +
T Consensus 94 -------------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~-S 144 (667)
T PLN02712 94 -------------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL-S 144 (667)
T ss_pred -------------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC-C
Confidence 233455676644 56999999999999999999986 56776 67777664 1
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEE----eCCCcHHHHhccCceEEE--EeCCh----hhHHHHHHHhcCCCe
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYL----GGPNIASEIYNKEYANAR--ICGAE----KWRKPLAKFLRRPHF 269 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~----~GP~~a~ev~~g~~~~~~--~~~~~----~~~~~i~~lf~~~g~ 269 (303)
+- ..+.+.+.+.++... . .+- .||........+.+.... ...++ +.++.+.++|...|.
T Consensus 145 vK---------~~~~~~l~~~l~~~~-~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 145 VK---------EFAKNLLLDYLPEDF-D-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred Cc---------HHHHHHHHHhcCCCC-e-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 11 122344555554321 1 222 355543323334332111 11222 235667799998898
Q ss_pred EEEecC
Q 022050 270 TVWDNG 275 (303)
Q Consensus 270 ~~~~~~ 275 (303)
+++..+
T Consensus 214 ~v~~ms 219 (667)
T PLN02712 214 KMVEMS 219 (667)
T ss_pred EEEEeC
Confidence 887654
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-07 Score=89.12 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=97.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||. |.||..||..|.+..| ++|+.+|+..+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~~------------------------------------- 41 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADPG------------------------------------- 41 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCccc-------------------------------------
Confidence 479999999 9999999999986424 788888875210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH---hhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~---l~~~~~~~iivs~~n 198 (303)
..++.+++++||+||+|||...+.++++++.++ +++ +++|..+.+
T Consensus 42 -----------------------------~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVgS 89 (370)
T PRK08818 42 -----------------------------SLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVTS 89 (370)
T ss_pred -----------------------------cCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECCC
Confidence 023456678999999999999999999999987 566 676654331
Q ss_pred cCccccccccccCCHHHHHHhH----hCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEec
Q 022050 199 GVEAELEAVPRIITPTQMINRA----TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~----l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
- -. .+-+.+... .| .|| +.||... ...++.+..++.....+..+.++++++..|.++...
T Consensus 90 v-K~---------~i~~~~~~~~~~fVG--~HP---MaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 90 I-KQ---------APVAAMLASQAEVVG--LHP---MTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred C-cH---------HHHHHHHhcCCCEEe--eCC---CCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence 1 10 011112111 11 133 2555443 234565544443333344678899999888888765
Q ss_pred CChhHHHHHHHH
Q 022050 275 GDLVTHEVMGGL 286 (303)
Q Consensus 275 ~Di~g~e~~~~l 286 (303)
+=-..-+..+..
T Consensus 154 ~aeeHD~~~A~v 165 (370)
T PRK08818 154 TPEHHDRVMALV 165 (370)
T ss_pred CHHHHHHHHHHH
Confidence 433333444433
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-07 Score=102.23 Aligned_cols=184 Identities=13% Similarity=0.089 Sum_probs=116.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||++||.|.||..+|..|+++ | ++|++|+|++++.+++..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~-------------------------------- 45 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKFCE-------------------------------- 45 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence 47899999999999999999999 9 999999999876643210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
.......++.+++++||+||+++|.. .+++++ +.+.+.+.+ ++++|.++
T Consensus 46 -----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S- 98 (1378)
T PLN02858 46 -----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS- 98 (1378)
T ss_pred -----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-
Confidence 02334567888889999999999985 567776 345555555 66666443
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEe-cC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NG 275 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~-~~ 275 (303)
.+.+.+ .+.+.+.+......+..+-.|-.-. ....|... +.++++.+..++++.+|+.-+-+++. ..
T Consensus 99 Ti~p~~---------~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 99 TILPLQ---------LQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred CCCHHH---------HHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecC
Confidence 444431 1223333311110122344443322 12234322 34467777788888888876766653 46
Q ss_pred ChhHHHHHHHHHHHHHH--HHHHHhhhc
Q 022050 276 DLVTHEVMGGLKNVYAI--GAGTIYFLV 301 (303)
Q Consensus 276 Di~g~e~~~~lkNv~Ai--~~G~~~gl~ 301 (303)
+.=.-...|++-|.+.. ..++++++.
T Consensus 169 ~~G~g~~~KL~nN~l~~~~~~a~aEAl~ 196 (1378)
T PLN02858 169 EIGAGSKVKMVNELLEGIHLVASAEAMA 196 (1378)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667788888887543 245666553
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-07 Score=85.57 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
||||+|||+|.||..+|..++.. | . +|.++|++++.++.... -+.. ...
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~~~~-----dl~~---------------~~~---- 51 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQGKAL-----DIAE---------------AAP---- 51 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHHHHH-----HHHh---------------hhh----
Confidence 58999999999999999999987 7 4 89999998876432100 0000 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~ 185 (303)
. .. ....++.++|.+ ++++||+||+++ |. ..++++++++.++.+
T Consensus 52 -~-~~-----------------~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 52 -V-EG-----------------FDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred -h-cC-----------------CCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 00 002466667775 579999999986 33 246777888887765
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+.+++..+|...
T Consensus 112 ----~~~viv~tNP~d 123 (307)
T PRK06223 112 ----DAIVIVVTNPVD 123 (307)
T ss_pred ----CeEEEEecCcHH
Confidence 466777777543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=89.04 Aligned_cols=93 Identities=17% Similarity=0.234 Sum_probs=71.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-|+|+|||+|.||.++|..|+.. | ++|..|+++++... .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------- 184 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------- 184 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h-------
Confidence 37999999999999999999987 8 89999999864210 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHH-HHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~-vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
....+.++++++++||+|++++|... ... +.+++...+++ ++++|.+..|-
T Consensus 185 ------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG~ 237 (330)
T PRK12480 185 ------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARGA 237 (330)
T ss_pred ------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCcc
Confidence 01123467888999999999999874 333 44566677777 89999999997
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 238 ~vd 240 (330)
T PRK12480 238 VIN 240 (330)
T ss_pred ccC
Confidence 765
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=81.68 Aligned_cols=182 Identities=16% Similarity=0.120 Sum_probs=106.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.++|++||.|+||..++..|.++ | |.|++|+|+.++.+.+.+.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~~~------------------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQEA------------------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHHHh-------------------------------
Confidence 58999999999999999999999 9 9999999998866532111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhh---ccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWK---ERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~---~~~~~~iivs~~n 198 (303)
.-++..++.|..+++|+||..||.. +.++++-.-...+. + +.....-++
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~---g~~~~vDmS 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRP---GKKATVDMS 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccC---CCceEEecc
Confidence 1223456788889999999999875 45665544222222 2 222211222
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh--ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~--~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.+.+. .+..|++..-.. ....+-.|-.-..-. +|..+ +.+++|++..+....+|..-|-.+++--.
T Consensus 131 Tidp~---------~s~ei~~~i~~~--~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~ 198 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISNK--GGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG 198 (327)
T ss_pred ccCHH---------HHHHHHHHHHhC--CCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence 33333 123344433211 122344443322211 23222 23467778888888999888866665444
Q ss_pred hhHHHHHHHHHHHHHH--HHHHHhhh
Q 022050 277 LVTHEVMGGLKNVYAI--GAGTIYFL 300 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai--~~G~~~gl 300 (303)
.=.-+-++..-|++.= -.|++|||
T Consensus 199 ~GnG~~~Kl~nnm~~g~~M~g~aEal 224 (327)
T KOG0409|consen 199 VGNGQAAKLCNNMLLGSSMVGLAEAL 224 (327)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554321 13455554
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=82.62 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=71.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|.||+.+|..++.. | + +|+++|++++..+. + .+. .+.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~----a~d-------------~~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---K----ALD-------------MYEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---H----HHh-------------hhhhhhc----
Confidence 7999999999999999999998 7 5 79999997663221 0 000 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~ 186 (303)
. .....+++++|.++ +++||+||+++.. ..++++.++|.++.+
T Consensus 52 --~-----------------~~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 --G-----------------GFDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred --c-----------------CCCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 00125777788876 7899999999962 235667777777653
Q ss_pred cCCCCEEEEeeccCcc
Q 022050 187 RITVPVIISLAKGVEA 202 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~ 202 (303)
+.+++..+|....
T Consensus 111 ---~~~iIv~tNP~di 123 (305)
T TIGR01763 111 ---NPIIVVVSNPLDA 123 (305)
T ss_pred ---CeEEEEecCcHHH
Confidence 5788888886543
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=74.93 Aligned_cols=94 Identities=34% Similarity=0.451 Sum_probs=65.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc-hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++|+|||.|+.|.+-|.-|.++ | .+|++..|... ..++..
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 37999999999999999999999 9 89999988876 222110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+| +++ .+..|+++.||+|++.+|.....+++ ++|.+++++ ++.+ .+.-|+
T Consensus 46 -----------~~G------------f~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~~L-~fahGf 97 (165)
T PF07991_consen 46 -----------ADG------------FEV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GATL-VFAHGF 97 (165)
T ss_dssp -----------HTT-------------EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T-EE-EESSSH
T ss_pred -----------HCC------------Cee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CCEE-EeCCcc
Confidence 012 222 35778999999999999999999999 889999998 6654 466666
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-07 Score=90.46 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=78.6
Q ss_pred ceEEEECCChHHHHH-HHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~ai-A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+++|+|+||+++ +..|++. | ++|++++++++.+++++.++++.+. ..+.. +
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v~----------------~~~~~---~ 55 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQVI----------------VVGEN---E 55 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEEE----------------EecCC---C
Confidence 799999999999855 7788887 8 8999999998888887766542111 10000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCchhHHHHHHHHHHHhhccC-----CCCE
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~d~~~---a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~-----~~~i 192 (303)
+.. .+ ..+... .+.++ ++.++|+|.++|++...+.+...|.+.+.++. +.-.
T Consensus 56 ~~~-----------~i-------~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 56 QVE-----------TV-------SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred cEE-----------EE-------eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 000 00 022222 12122 34588999999999998888988888776521 1227
Q ss_pred EEEeeccCccc
Q 022050 193 IISLAKGVEAE 203 (303)
Q Consensus 193 ivs~~nGi~~~ 203 (303)
|+|+.||+.+.
T Consensus 118 VlsceN~~~ng 128 (381)
T PRK02318 118 IIACENMIRGT 128 (381)
T ss_pred EEecCChhhHH
Confidence 89999999986
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=81.68 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=68.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.||+.+|..++.. |. .+|.|+|++++.++. +. +...+ ....
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~~~---~~----ld~~~------------~~~~------ 56 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIPQG---KA----LDISH------------SNVI------ 56 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchhhH---HH----HHHHh------------hhhc------
Confidence 7999999999999999999988 72 379999999986431 11 11000 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------------hhHHHHHHHHHH
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------------TETKEVFEEISR 182 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~---------------------~~~~~vl~~l~~ 182 (303)
. ....++..++|.+ ++++||+||++.-. ..+.++++++.+
T Consensus 57 --~----------------~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~ 117 (321)
T PTZ00082 57 --A----------------GSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK 117 (321)
T ss_pred --c----------------CCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0002466667875 68999999997611 126677777777
Q ss_pred HhhccCCCCEEEEeeccCc
Q 022050 183 YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~ 201 (303)
+.+ +..++..+|...
T Consensus 118 ~~p----~a~~iv~sNP~d 132 (321)
T PTZ00082 118 YCP----NAFVIVITNPLD 132 (321)
T ss_pred HCC----CeEEEEecCcHH
Confidence 765 456666776543
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-07 Score=86.93 Aligned_cols=78 Identities=21% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceEEEECCChHHHHHHH--HHH----HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 44 LRIVGVGAGAWGSVFTA--MLQ----DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~--~La----~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
+||+|||+|+||.+.+. .++ .+ | ++|.+||++++.++.+... +. .+++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~-g-----~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~ 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELS-G-----STIALMDIDEERLETVEIL-----AK-------------KIVEEL 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCC-C-----CEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc
Confidence 58999999999998766 343 33 4 7999999999877653321 11 011111
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~ 170 (303)
.. ..++.+++|+++++++||+||++++.
T Consensus 57 -------~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 57 -------GA------------------PLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred -------CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 00 02577899999999999999999985
|
linked to 3D####ucture |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.5e-06 Score=70.70 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=75.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+ |.+|+++|..|... +.. .++.|+|++++.++... +. +.+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a-------~D---------------l~~~~~~-- 52 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEA-------LD---------------LSHASAP-- 52 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHH-------HH---------------HHHHHHG--
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeee-------hh---------------hhhhhhh--
Confidence 79999999 99999999999998 632 47999999987554311 10 1111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch--------------hHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~--------------~~~~vl~~l~~~l~~ 186 (303)
. ..+..+..+..+++++||+||++. |.. .++++.+++.++.+
T Consensus 53 ---~------------------~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 53 ---L------------------PSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp ---S------------------TEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred ---c------------------ccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 0 012344445566789999999987 221 35556666666653
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCC
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~ 225 (303)
+.+++..+|.+.. ...++.+..+.+.
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~ 136 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPP 136 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCc
Confidence 5778878876553 3456666666543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.5e-06 Score=78.41 Aligned_cols=95 Identities=26% Similarity=0.392 Sum_probs=70.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||.++|..|... | ++|++|++.....+. ...
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------ 57 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------ 57 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH------
Confidence 37899999999999999999998 8 899999875432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
....+ .+++++++.||+|++.+|....+.++. ++.+.+++ ++ ++..+-|+.
T Consensus 58 -----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfn 109 (335)
T PRK13403 58 -----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFN 109 (335)
T ss_pred -----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcc
Confidence 02223 368889999999999999876677774 57777877 55 455777877
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
..
T Consensus 110 i~ 111 (335)
T PRK13403 110 IH 111 (335)
T ss_pred ee
Confidence 64
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=4e-06 Score=79.55 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||..+|..++.. |. .++.|+|++++.++... +.-.+ ... .
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g~~-------lDl~~-----------~~~-~---- 55 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQGKA-------LDLKH-----------FST-L---- 55 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchhHH-------HHHhh-----------hcc-c----
Confidence 347999999999999999999887 62 47999999987654210 11000 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~ 185 (303)
. .....+..++|.+ ++++||+||++. |. ..+.++++++.++.+
T Consensus 56 ----~----------------~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 56 ----V----------------GSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred ----c----------------CCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 0001455567776 689999999999 33 236678888888765
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+.+++..+|...
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466666676543
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=83.54 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=68.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-|+|+|||+|.||.++|..|++..| .+|..|+++..... ..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~~----------------------------~~------ 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAKA----------------------------AT------ 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHhH----------------------------Hh------
Confidence 4899999999999999999954325 67888887653210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH-HHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET-KEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~-~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+...+++++++++||+|++++|.... +.++ ++..+.+++ ++++|.+++|.
T Consensus 187 ------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG~ 239 (332)
T PRK08605 187 ------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARGS 239 (332)
T ss_pred ------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCCc
Confidence 122335688889999999999998753 3333 334555777 88999999997
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 ~vd 242 (332)
T PRK08605 240 LVD 242 (332)
T ss_pred ccC
Confidence 765
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.4e-06 Score=78.18 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=71.4
Q ss_pred ceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 44 ~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
|||.|.|+|+ -|.++|..|+++ | |+|++|+|+++..+.-..+
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e~~e------------ 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDDLWK------------ 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhH------------
Confidence 7889999986 378999999999 9 9999999987644210000
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~~l~~ 182 (303)
.+.. .+...++++.++++++|+||+++|... .+++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0110 134456778889999999999999874 7788888888
Q ss_pred HhhccCCCCEEEEeeccCcc
Q 022050 183 YWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~ 202 (303)
.+++ ++++|.++ .+++
T Consensus 105 ~L~~---GaIVID~S-TIsP 120 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSP 120 (341)
T ss_pred cCCC---CCEEEECC-CCCH
Confidence 7777 77766443 4444
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-06 Score=77.77 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=66.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
|+|||+|.||..+|..++.. | . +|+++|++++.++... +...+ ... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g~~-------~dl~~-----------~~~-~------- 48 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQGKA-------LDISQ-----------AAP-I------- 48 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHHHH-------HHHHH-----------hhh-h-------
Confidence 68999999999999999988 7 5 8999999987442210 10000 000 0
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~~~ 188 (303)
. ....+++.++|.+ ++++||+||+++-. ..++++++++.++.++
T Consensus 49 -~----------------~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~-- 108 (300)
T cd01339 49 -L----------------GSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPN-- 108 (300)
T ss_pred -c----------------CCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCC--
Confidence 0 0002466667764 58999999998721 1366788888887653
Q ss_pred CCCEEEEeeccCc
Q 022050 189 TVPVIISLAKGVE 201 (303)
Q Consensus 189 ~~~iivs~~nGi~ 201 (303)
.+++..+|...
T Consensus 109 --~~iIv~sNP~d 119 (300)
T cd01339 109 --AIVIVVTNPLD 119 (300)
T ss_pred --eEEEEecCcHH
Confidence 56666666543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=73.16 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=72.0
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
|+|||+ |.||..+|..|+.. |.+.. .+|.++|+++++++....+ ++. ...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~~-~el~L~D~~~~~l~~~~~d-----l~~-------------~~~--------- 51 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLLA-IELVLYDIDEEKLKGVAMD-----LQD-------------AVE--------- 51 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCcc-eEEEEEeCCcccchHHHHH-----HHH-------------hhh---------
Confidence 689999 99999999999987 52111 5899999999776542211 110 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~~~ 188 (303)
.. ...++.+++|+.+++++||+||++.-. ..++++++++.++.+
T Consensus 52 ~~-----------------~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 52 PL-----------------ADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred hc-----------------cCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 00 002577788888889999999996622 146777888887764
Q ss_pred CCCEEEEeeccCcc
Q 022050 189 TVPVIISLAKGVEA 202 (303)
Q Consensus 189 ~~~iivs~~nGi~~ 202 (303)
+++++..+|....
T Consensus 112 -~a~~i~~tNP~d~ 124 (263)
T cd00650 112 -DAWIIVVSNPVDI 124 (263)
T ss_pred -CeEEEEecCcHHH
Confidence 5777777776543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.9e-05 Score=78.55 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 133 (303)
||..+|..|+++ | ++|.+|+|++++.+.+.+. . -++
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l~~~--------~-------------g~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEFLAE--------E-------------GKG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHh--------h-------------CCC-----------------
Confidence 899999999999 9 9999999999876542110 0 000
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccc
Q 022050 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (303)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~ 209 (303)
.++....+++++++. +|+||++||.. .++++++.|.+.+.+ +.+||...+.....+
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 034556778887764 89999999996 689999999999887 788887776544331
Q ss_pred cCCHHHHHHhHhCCCCccEEEEeCCCcHHH-Hh-ccCceEEEEeCChhhHHHHHHHhcCCCeE------E-EecCChhHH
Q 022050 210 IITPTQMINRATGVPIENILYLGGPNIASE-IY-NKEYANARICGAEKWRKPLAKFLRRPHFT------V-WDNGDLVTH 280 (303)
Q Consensus 210 ~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e-v~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------~-~~~~Di~g~ 280 (303)
+...+.+... .+..+..|-.-.+ .+ .| + .+.++++.+..+.++.+|+.-+-+ | ....+.=.-
T Consensus 97 -----~~~~~~l~~~--Gi~fvdapVSGG~~gA~~G-~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaG 167 (459)
T PRK09287 97 -----IRREKELAEK--GIHFIGMGVSGGEEGALHG-P-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAG 167 (459)
T ss_pred -----HHHHHHHHhc--CCeEEecCCCCCHHHHhcC-C-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHH
Confidence 1112222111 1122333332222 12 34 3 345677777777777777653333 2 233344334
Q ss_pred HHHHHHHHH--HHHHHHHHhhhc
Q 022050 281 EVMGGLKNV--YAIGAGTIYFLV 301 (303)
Q Consensus 281 e~~~~lkNv--~Ai~~G~~~gl~ 301 (303)
...|..-|. |+...+++|++.
T Consensus 168 h~vKmvhN~ie~~~mq~iaEa~~ 190 (459)
T PRK09287 168 HYVKMVHNGIEYGDMQLIAEAYD 190 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777774 556666666653
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=79.01 Aligned_cols=81 Identities=21% Similarity=0.190 Sum_probs=52.8
Q ss_pred CceEEEECCChHHHHHHH--HHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|+||.+.+. .++...+ +.. .+|+|+|+++++++.... .++. .....
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~~-~evvLvDid~er~~~~~~-----l~~~-------------~~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LRD-AEIALMDIDPERLEESEI-----VARK-------------LAESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CCC-CEEEEECCCHHHHHHHHH-----HHHH-------------HHHhc---
Confidence 479999999999977766 5552212 211 589999999987653221 1111 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV 168 (303)
.. ..++.+++|..+++++||+||+++
T Consensus 58 ----~~------------------~~~i~~ttD~~eal~dADfVv~ti 83 (431)
T PRK15076 58 ----GA------------------SAKITATTDRREALQGADYVINAI 83 (431)
T ss_pred ----CC------------------CeEEEEECCHHHHhCCCCEEeEee
Confidence 00 025778899888999999999987
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=74.47 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=45.7
Q ss_pred cCCchhhhhhHHHHHhccCCCCC-----ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 21 TNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-----~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
-||.+- +.+.+-.||.....+| +||+|||+|.+|+++|..++.. |.. .++.|+|++++.++
T Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 11 GPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred ccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 555555 6666666666655433 6999999999999999999887 632 37999999987654
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-05 Score=73.67 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=58.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||..++..+.+. + . ..+ +.++++++++.+.+. ..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~a-------------------------~~----- 46 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENLA-------------------------SK----- 46 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHHH-------------------------Hh-----
Confidence 48999999999999999998865 3 0 134 567888876543210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
......+++++.+.++|+|++|+|+....+...++..
T Consensus 47 ------------------------~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 47 ------------------------TGAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred ------------------------cCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 0133456787777889999999999888777766543
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-05 Score=62.40 Aligned_cols=122 Identities=20% Similarity=0.201 Sum_probs=72.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|+|+ |.||..++..+.+..+ +++ -.++++++.... .....+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g------------------------~d~g~~~--- 48 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG------------------------KDVGELA--- 48 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT------------------------SBCHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc------------------------chhhhhh---
Confidence 79999999 9999999999998424 664 456777632110 0011100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+ .. ...+.+++|++++++.+|++|-++-+....+.++....+ +..+|+.|.|+.
T Consensus 49 ~---~~-----------------~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 49 G---IG-----------------PLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp T---SS-----------------T-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred C---cC-----------------CcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 00 025667899999988999999999776666666655443 567888888987
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~ 236 (303)
.+. .+.+++.-. ...++..|||
T Consensus 103 ~~~---------~~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQ---------IDELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHH---------HHHHHHHTT----TSEEEE-SSS
T ss_pred HHH---------HHHHHHHhc----cCCEEEeCCC
Confidence 542 133444332 1346677775
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.2e-05 Score=72.04 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=33.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+||+|||+|.+|.++|..|+.. |.. ++|.++|++++.++.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~~ 40 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAEG 40 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhhH
Confidence 4899999999999999999988 721 489999999887643
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.4e-06 Score=74.43 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=86.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+.||+|+|+|-+|+++|..||.. | ++|.+||..++++...-++ ++.. ++++-+.+ .+++
T Consensus 3 ~~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~ALen-----~~Ke---l~~Lee~g-~lrG------ 61 (313)
T KOG2305|consen 3 FGKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTALEN-----VEKE---LRKLEEHG-LLRG------ 61 (313)
T ss_pred ccceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHHHH-----HHHH---HHHHHHhh-hhcc------
Confidence 46899999999999999999999 9 8999999999877542211 1111 11111111 1111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++| .+..+..|+++.|++++|=.|=.|+|+. ....++++|...+.+ .+++.|.++.+
T Consensus 62 --nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~ 123 (313)
T KOG2305|consen 62 --NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTF 123 (313)
T ss_pred --CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEecccccc
Confidence 222221 1224677899999999999999999997 578899999998887 67778888777
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
.++
T Consensus 124 mpS 126 (313)
T KOG2305|consen 124 MPS 126 (313)
T ss_pred ChH
Confidence 765
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=71.56 Aligned_cols=81 Identities=21% Similarity=0.251 Sum_probs=56.7
Q ss_pred CceEEEECCChHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||..++..|... .+ +++. +|+|++++.+... ..+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~~a-------------------------~~~--- 52 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHADFI-------------------------WGL--- 52 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHHHH-------------------------Hhc---
Confidence 48999999999999999998762 13 6665 7898876543210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
......+++++.+.++|+|++++|.....++..+..
T Consensus 53 -------------------------g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 53 -------------------------RRPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred -------------------------CCCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 001234567777788999999999988777765543
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.1e-05 Score=68.47 Aligned_cols=107 Identities=20% Similarity=0.248 Sum_probs=64.2
Q ss_pred HHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEE---EE
Q 022050 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENIL---YL 231 (303)
Q Consensus 155 ~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---v~ 231 (303)
.++++++|+||+|||...+.++++++.+++++ +++|+.++ ++-. .+-+.+.+.++.. ..++ =+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~---------~~~~~~~~~~~~~-~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKA---------PIVEAMERLLPEG-VRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CH---------HHHHHHHHHHTSS-GEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCH---------HHHHHHHHhcCcc-cceeecCCC
Confidence 45789999999999999999999999999887 77776554 2211 1234455655521 1111 12
Q ss_pred eCC-----CcHH-HHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecC
Q 022050 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 232 ~GP-----~~a~-ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.|| ..+. +...|.+..++... +.+..+.+.+++...|.++...+
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMD 157 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcC
Confidence 444 3332 34567665555533 34578999999999998887653
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.3e-05 Score=75.15 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=70.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 37999999999999999999876 7 899999987632110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
.++....+++++++.||+|++++|-. .++.++. +....+++ ++++|.+..|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 02333357888899999999999975 4666663 34555676 88999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 288 iVD 290 (385)
T PRK07574 288 IVD 290 (385)
T ss_pred hhh
Confidence 543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-05 Score=70.91 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.+|+++|..|+.. |.. .+|.++|+++++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 7999999999999999999998 721 47999999987653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=69.79 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..+||+|||+|.+|+++|..++.. |.. .++.|+|++++.++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~ 45 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE 45 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence 347999999999999999999988 731 27999999887654
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=58.25 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=64.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|.+|......+... . +..++. ++++++++.+++. +.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~~-------------------------~~------ 45 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAFA-------------------------EK------ 45 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHHH-------------------------HH------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHHH-------------------------HH------
Confidence 6899999999999999888775 2 115544 7888876554311 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.++...+|.++.++ +.|+|++++|+....+.+.+.... +.. |-+-|.+
T Consensus 46 -----------------------~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~~-v~~EKP~ 95 (120)
T PF01408_consen 46 -----------------------YGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GKH-VLVEKPL 95 (120)
T ss_dssp -----------------------TTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TSE-EEEESSS
T ss_pred -----------------------hcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CCE-EEEEcCC
Confidence 12446678888776 789999999999887777765542 333 3456665
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 54
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.2e-05 Score=73.85 Aligned_cols=96 Identities=22% Similarity=0.259 Sum_probs=69.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+..- | .+|..|+|+...... ..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEAE---------------------------KE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhhH---------------------------HH-----
Confidence 348999999999999999999877 8 899999997642100 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
..... .++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|
T Consensus 191 ------------------------~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ------------------------LGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ------------------------cCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 01222 36778889999999999975 355555 445556777 7888888877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
-..+
T Consensus 243 ~~vd 246 (333)
T PRK13243 243 KVVD 246 (333)
T ss_pred hhcC
Confidence 5544
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.5e-05 Score=73.63 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=70.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..|..- | .+|..|+++....+. ...
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~------ 240 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE------ 240 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh------
Confidence 47999999999999999999876 7 899999987531110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+....++++.+++||+|++++|.. .++.++ +++...+++ ++++|.+..|=
T Consensus 241 -----------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 294 (386)
T PLN03139 241 -----------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARGA 294 (386)
T ss_pred -----------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCCc
Confidence 02333457888889999999999974 456665 345556677 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 295 iVD 297 (386)
T PLN03139 295 IMD 297 (386)
T ss_pred hhh
Confidence 443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.7e-05 Score=71.53 Aligned_cols=95 Identities=27% Similarity=0.383 Sum_probs=69.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||..+|..|..- | .+|..|++..+... +..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~~-----------------------------~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSWP-----------------------------GVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCCC-----------------------------Cce----
Confidence 37999999999999999999877 8 89999998653211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++. +....+++ ++++|.+..|-
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 0101246788899999999999975 4566653 34455676 78999888885
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 230 vVd 232 (312)
T PRK15469 230 HVV 232 (312)
T ss_pred ccC
Confidence 554
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00023 Score=66.53 Aligned_cols=94 Identities=34% Similarity=0.448 Sum_probs=71.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||.|+=|.+=|.-|-.+ | .+|++--|.... .++. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA----------------------------~----- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKA----------------------------K----- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHH----------------------------H-----
Confidence 6999999999999999999999 9 788876665543 2110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+ .+++ .+.++|++.||+|++-+|.....++++ +|.|.+++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~V-~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFKV-YTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCEe-ecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 01 2333 357789999999999999999999998 89999997 55 455677776
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
.-
T Consensus 113 ih 114 (338)
T COG0059 113 IH 114 (338)
T ss_pred ee
Confidence 53
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=68.68 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=33.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+||+|||+|.+|+++|..++.. |. . .++.|+|++++.++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~-~--~el~LiD~~~~~~~ 42 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GL-A--DELVLVDVVEDKLK 42 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC-C--CEEEEEeCCccHHH
Confidence 47999999999999999999887 62 1 47999999987554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.3e-05 Score=65.79 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=65.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|+|....... ...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 77 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE----- 77 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH-----
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc-----
Confidence 358999999999999999999876 8 899999999853210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
... ...++++.++.||+|++++|... .+.++ ++....+++ ++++|.+..|
T Consensus 78 ------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~aRG 129 (178)
T PF02826_consen 78 ------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVARG 129 (178)
T ss_dssp ------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESSSG
T ss_pred ------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEeccch
Confidence 023 23478888999999999999642 23332 223333666 7899988877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 130 ~~vd 133 (178)
T PF02826_consen 130 ELVD 133 (178)
T ss_dssp GGB-
T ss_pred hhhh
Confidence 5443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.7e-05 Score=62.79 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..++|+|+|+|.||.+++..|++. |. ++|++|+|++++.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g~----~~v~v~~r~~~~~~ 57 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-GA----AKIVIVNRTLEKAK 57 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHH
Confidence 358999999999999999999887 51 68999999987654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.3e-05 Score=68.53 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G 67 (303)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 79999999 99999999999888 7
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8e-05 Score=67.52 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|+|+.||.|.||..+...|... | |+|+.||++++.++++..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999998 8 99999999998776532111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~---a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+..+++++ -+.....|-+-||.. .+.++++++++.+++ +-+||.--|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 111122332 244567888999997 789999999999998 6777765544
Q ss_pred C
Q 022050 200 V 200 (303)
Q Consensus 200 i 200 (303)
-
T Consensus 97 ~ 97 (300)
T COG1023 97 N 97 (300)
T ss_pred c
Confidence 3
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00046 Score=63.16 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=72.8
Q ss_pred CceEEEECCCh--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhh
Q 022050 43 PLRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (303)
Q Consensus 43 ~~kI~VIGaG~--------------------mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (303)
+|||+|.|+|+ -|+.+|..||++ | |+|+|.+++.+-.+. +
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~----------- 60 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---E----------- 60 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---H-----------
Confidence 48999999996 377899999999 9 999999998865432 1
Q ss_pred HHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHH
Q 022050 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (303)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~ 181 (303)
..+.+ .| ..+++++|..++++.+++.++.+|-. .+-.+.++|.
T Consensus 61 ----------~w~~v----ed----------------------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 61 ----------HWKRV----ED----------------------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred ----------HHHHH----Hh----------------------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 11111 11 26788888888999999999999997 7888999999
Q ss_pred HHhhccCCCCEEE
Q 022050 182 RYWKERITVPVII 194 (303)
Q Consensus 182 ~~l~~~~~~~iiv 194 (303)
++++. +++|.
T Consensus 105 ~hvpE---gAVic 114 (340)
T COG4007 105 EHVPE---GAVIC 114 (340)
T ss_pred hhCcC---CcEec
Confidence 99997 66543
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.8e-05 Score=70.68 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
-++++|+|+|.||.++|..|... | .+|++++|++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~~ 187 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSADL 187 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 37999999999999999999988 8 7999999987643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=75.08 Aligned_cols=120 Identities=27% Similarity=0.357 Sum_probs=80.3
Q ss_pred chhhhhhHHH--HHhccCCC-------CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHH
Q 022050 24 SLEERLDELR--RLMGKAEG-------DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLF 94 (303)
Q Consensus 24 ~~~~~~~~~~--~~~~~~~~-------~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~ 94 (303)
++++.|.++. |+|...+- .-++|+|||+|++|.+-|..|... | ++|++--|... ++. +
T Consensus 8 ~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~~-id~---~--- 74 (487)
T PRK05225 8 NLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEA-IAE---K--- 74 (487)
T ss_pred cHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccc-c-----ceeEEeccccc-ccc---c---
Confidence 4577777776 44444442 138999999999999999888888 8 88886655431 110 0
Q ss_pred HHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHH
Q 022050 95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (303)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~ 174 (303)
+ ...+.. ..+| +.+ .+.+++++.||+|++.+|.....
T Consensus 75 ----~------------~s~~kA--------------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~ 111 (487)
T PRK05225 75 ----R------------ASWRKA--------------TENG------------FKV-GTYEELIPQADLVINLTPDKQHS 111 (487)
T ss_pred ----c------------chHHHH--------------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHH
Confidence 0 000000 0012 222 45788899999999999999878
Q ss_pred HHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 175 EVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 175 ~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.+.+++.+++++ ++. +..+-|+...
T Consensus 112 ~v~~~i~p~LK~---Ga~-L~fsHGFni~ 136 (487)
T PRK05225 112 DVVRAVQPLMKQ---GAA-LGYSHGFNIV 136 (487)
T ss_pred HHHHHHHhhCCC---CCE-EEecCCceee
Confidence 888999999997 554 4566676653
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=67.85 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=32.0
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+|||+|.+|+++|..++.. |.. .+++++|+++++++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 479999999887654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00023 Score=67.29 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=68.4
Q ss_pred hhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhh
Q 022050 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (303)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 108 (303)
++..+..++. -..+||+|||+|.||..++..+... |. .+|++++|++++.+.+..+
T Consensus 166 v~~a~~~~~~--l~~~~V~ViGaG~iG~~~a~~L~~~-g~----~~V~v~~r~~~ra~~la~~----------------- 221 (311)
T cd05213 166 VELAEKIFGN--LKGKKVLVIGAGEMGELAAKHLAAK-GV----AEITIANRTYERAEELAKE----------------- 221 (311)
T ss_pred HHHHHHHhCC--ccCCEEEEECcHHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHHHHHH-----------------
Confidence 4444444443 2348999999999999999999885 51 6899999998765431100
Q ss_pred hhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccC
Q 022050 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (303)
Q Consensus 109 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~ 188 (303)
+.. ......+..+++.++|+||.++++....++++.+......
T Consensus 222 -----~g~------------------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~-- 264 (311)
T cd05213 222 -----LGG------------------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG-- 264 (311)
T ss_pred -----cCC------------------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--
Confidence 000 0111134566778999999999988765555544322221
Q ss_pred CCCEEEEeec
Q 022050 189 TVPVIISLAK 198 (303)
Q Consensus 189 ~~~iivs~~n 198 (303)
++.+++.+..
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 1456776664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00042 Score=65.52 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||+|||+|.+|+++|..|+.+ +.. .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 732 37999999887653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=70.93 Aligned_cols=87 Identities=23% Similarity=0.286 Sum_probs=60.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||.|||||.+|+.+|..||++ | ..+|++.+|+.++.+++.... ....+..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~----d~~V~iAdRs~~~~~~i~~~~------------------~~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-G----DGEVTIADRSKEKCARIAELI------------------GGKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-C----CceEEEEeCCHHHHHHHHhhc------------------cccceeE-----
Confidence 68999999999999999999999 6 279999999998876643110 0001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE 179 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~ 179 (303)
.+ .+.-...+.+++++.|+||-+.|+.+...+++.
T Consensus 53 --~v--------------------D~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka 87 (389)
T COG1748 53 --QV--------------------DAADVDALVALIKDFDLVINAAPPFVDLTILKA 87 (389)
T ss_pred --Ee--------------------cccChHHHHHHHhcCCEEEEeCCchhhHHHHHH
Confidence 11 111123456778899999999999876666644
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00053 Score=65.06 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=99.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..+|+|||-|+||..+|..|.++ | |.|...+|.+ .+.+. + .| +
T Consensus 52 tl~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssaa---------~------------~y--------g 94 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSAA---------E------------KY--------G 94 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHHH---------H------------Hh--------c
Confidence 46899999999999999999999 9 9999999987 22111 0 01 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
.. ..+...|+ .-+..|+|++||.--.++.+++..-+. ++. +++++..++--.
T Consensus 95 ~~----------------------~ft~lhdl--cerhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKe 147 (480)
T KOG2380|consen 95 SA----------------------KFTLLHDL--CERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKE 147 (480)
T ss_pred cc----------------------ccccHHHH--HhcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecch
Confidence 00 11111232 236799999999998888888876554 444 777775553322
Q ss_pred cccccccccCCHHHHHHhHhCCCCccE--EEEeCCCcHHHHhccCceEEE-E-eC----ChhhHHHHHHHhcCCCeEEE
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANAR-I-CG----AEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~--~v~~GP~~a~ev~~g~~~~~~-~-~~----~~~~~~~i~~lf~~~g~~~~ 272 (303)
++ -+.+.+++|....-. --+.||.....-++|.|.... . .+ ..+..+.+.++|.+.+-+.+
T Consensus 148 fe----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmV 216 (480)
T KOG2380|consen 148 FE----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMV 216 (480)
T ss_pred hH----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEE
Confidence 21 245667776542111 134677755566677764331 1 22 25678999999988876553
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=68.77 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=65.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|+.... +.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~~------------------------------~~----- 160 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVND------------------------------GI----- 160 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCccc------------------------------Cc-----
Confidence 48999999999999999987665 7 8999999874210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. ....++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|-
T Consensus 161 ------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG~ 212 (303)
T PRK06436 161 ------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARAD 212 (303)
T ss_pred ------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 0 01236778889999999999975 355554 234444676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 213 ~vd 215 (303)
T PRK06436 213 VVD 215 (303)
T ss_pred ccC
Confidence 544
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00037 Score=66.43 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
+++||+|||+ |.+|+.+|..|+.. |.+. ...++.|+|.++. +++... +. +.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~~~~~~~g~a-------~D---------------l~~ 59 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPPALKALEGVV-------ME---------------LDD 59 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCCcccccceee-------hh---------------hhh
Confidence 4689999998 99999999999887 6431 1127999999653 222100 00 110
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC----ch------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP----ST------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp----~~------------~~~~vl~~l 180 (303)
. .. | ......++++..+++++||+||++-- +. .++++.++|
T Consensus 60 ~-------~~-~---------------~~~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i 116 (326)
T PRK05442 60 C-------AF-P---------------LLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKAL 116 (326)
T ss_pred h-------hh-h---------------hcCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 00123455555567899999999662 21 256666777
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 117 ~~~~~~---~~iiivvsNPvD 134 (326)
T PRK05442 117 NEVAAR---DVKVLVVGNPAN 134 (326)
T ss_pred HHhCCC---CeEEEEeCCchH
Confidence 776654 677887888553
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00045 Score=65.75 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.++. .++. + .+. +.+
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~~~~a~g---~----a~D---------------l~~ 58 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPPAMKALEG---V----AME---------------LED 58 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCCcccccch---H----HHH---------------Hhh
Confidence 5789999999 99999999999987 7421 1117999999752 2321 0 000 000
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--C--ch------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--P--ST------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p--~~------------~~~~vl~~l 180 (303)
. .. | ...+..++++..+++++||+||++- | +. .++++.++|
T Consensus 59 ~-------~~-~---------------~~~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i 115 (323)
T TIGR01759 59 C-------AF-P---------------LLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKAL 115 (323)
T ss_pred c-------cc-c---------------ccCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0012334445556789999999976 2 11 356677777
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 116 ~~~~~~---~~iiivvsNPvD 133 (323)
T TIGR01759 116 NKVAKK---DVKVLVVGNPAN 133 (323)
T ss_pred HhhCCC---CeEEEEeCCcHH
Confidence 777664 577777888543
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=71.49 Aligned_cols=92 Identities=17% Similarity=0.241 Sum_probs=65.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|+||..+|..+..- | .+|.+||+.....+ .
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~~-----------------------------~------ 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEAE-----------------------------G------ 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCcccccc-----------------------------c------
Confidence 37999999999999999999877 8 89999987532100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEEe
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL 196 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs~ 196 (303)
... ..++++.+++||+|++.+|-.. +..++ ++....+++ ++++|.+
T Consensus 155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (381)
T PRK00257 155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA 206 (381)
T ss_pred ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence 011 1357788889999999999642 44444 233444666 7899988
Q ss_pred eccCccc
Q 022050 197 AKGVEAE 203 (303)
Q Consensus 197 ~nGi~~~ 203 (303)
..|=..+
T Consensus 207 aRG~vVd 213 (381)
T PRK00257 207 SRGAVVD 213 (381)
T ss_pred CCCcccC
Confidence 8875554
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=73.98 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=68.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|++.... +. ...
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ------ 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 37999999999999999999876 7 899999985321 00 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+...+++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 179 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 232 (525)
T TIGR01327 179 -----------------------LGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGG 232 (525)
T ss_pred -----------------------cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCc
Confidence 02333457888899999999999975 455555 233345676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 233 ~vd 235 (525)
T TIGR01327 233 IID 235 (525)
T ss_pred eeC
Confidence 443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=69.67 Aligned_cols=95 Identities=24% Similarity=0.313 Sum_probs=63.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.....+|+|||+|.||...+..+....+ ..+|++|+|++++.+++..+ +.. .+
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~a~~-----~~~---------------~g--- 174 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEALAAE-----LRA---------------QG--- 174 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHHHHH-----HHh---------------cC---
Confidence 3456899999999999999987665213 16899999998876542210 000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+.+..++++++++||+|+.++++. ..++.. .++++ ++.|.
T Consensus 175 --------------------------~~~~~~~~~~~av~~aDIVi~aT~s~--~pvl~~--~~l~~---g~~i~ 216 (314)
T PRK06141 175 --------------------------FDAEVVTDLEAAVRQADIISCATLST--EPLVRG--EWLKP---GTHLD 216 (314)
T ss_pred --------------------------CceEEeCCHHHHHhcCCEEEEeeCCC--CCEecH--HHcCC---CCEEE
Confidence 02445677888899999999999876 333332 45666 66443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=73.46 Aligned_cols=95 Identities=22% Similarity=0.187 Sum_probs=69.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|.... +. ...
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ------ 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 47999999999999999999877 8 899999986421 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+... ++++.++.||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 181 -----------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG~ 233 (526)
T PRK13581 181 -----------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARGG 233 (526)
T ss_pred -----------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCCc
Confidence 022333 6888899999999999986 456665 445555677 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 234 ~vd 236 (526)
T PRK13581 234 IID 236 (526)
T ss_pred eeC
Confidence 543
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0004 Score=65.69 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+||+|||+|.+|+++|..|+.. + +. .++.|+|++++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~-~~--~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-G-LG--SELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-c-cc--ceEEEEEcccccc
Confidence 6999999999999999999765 5 21 3899999996654
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.8e-05 Score=61.31 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=35.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+.|||+|-+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 48999999999999999999998 82 469999999887654
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=70.66 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=65.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|+||+.+|..+..- | .+|..|++..... +.
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~~~------------------------------~~---- 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRADR------------------------------GD---- 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccccc------------------------------cc----
Confidence 348999999999999999999876 8 8999998643200 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs 195 (303)
... ..++++.+++||+|++.+|-.. ...++ ++....+++ ++++|.
T Consensus 155 -------------------------~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EGD-FRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------ccc-cCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 001 1367888889999999998543 33343 233344666 889999
Q ss_pred eeccCccc
Q 022050 196 LAKGVEAE 203 (303)
Q Consensus 196 ~~nGi~~~ 203 (303)
+..|=..+
T Consensus 206 ~aRG~vVD 213 (378)
T PRK15438 206 ACRGAVVD 213 (378)
T ss_pred CCCchhcC
Confidence 88885554
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00038 Score=66.23 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=31.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
++||+|||+ |.+|+++|..++.. |.+. ...++.|+|.++.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 579999999 99999999999987 7431 1127999999653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=65.54 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+|+|+ |.+|..++..++.. |.. .+|+++|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999998 721 2699999965
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00085 Score=59.56 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC---Cchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP---GRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~---~~~~~~ 87 (303)
..||+|+|+|.||+.+|..|++. |. .+++++|++ ++.+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL~R 63 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA-GI----GKLILVDFDVVEPSNLNR 63 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCEEccccccc
Confidence 47899999999999999999999 92 379999999 555443
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00063 Score=62.95 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=46.3
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCc
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~ 226 (303)
.+.+++|+++...++|+||.++++....+.+..... . +..+|+-+.|++.+. .+.+.+.....
T Consensus 55 gv~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~---~---g~~vVigttg~~~e~---------~~~l~~aA~~~-- 117 (266)
T TIGR00036 55 GVPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALE---H---GVRLVVGTTGFSEED---------KQELADLAEKA-- 117 (266)
T ss_pred CceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHH---C---CCCEEEECCCCCHHH---------HHHHHHHHhcC--
Confidence 355678887764568999999999887776665443 2 455665555876531 12233332211
Q ss_pred cEEEEeCCCcHHH
Q 022050 227 NILYLGGPNIASE 239 (303)
Q Consensus 227 ~~~v~~GP~~a~e 239 (303)
.+.++.+||++--
T Consensus 118 g~~v~~a~NfSlG 130 (266)
T TIGR00036 118 GIAAVIAPNFSIG 130 (266)
T ss_pred CccEEEECcccHH
Confidence 1346778888653
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=67.98 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=69.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|+.+|..+..- | .+|..||+....-. ...
T Consensus 142 gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~----------------------------~~~----- 182 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRER----------------------------AGV----- 182 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhh----------------------------hcc-----
Confidence 48999999999999999999876 8 89999999432110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
.......++++.++.||+|.+.+|-. .++.++. +....+++ ++++|.+..|-
T Consensus 183 -----------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~aRG~ 236 (324)
T COG0111 183 -----------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINAARGG 236 (324)
T ss_pred -----------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEECCCcc
Confidence 02333467888999999999999986 4566653 23344666 78889888886
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 vVd 239 (324)
T COG0111 237 VVD 239 (324)
T ss_pred eec
Confidence 554
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00024 Score=69.80 Aligned_cols=93 Identities=20% Similarity=0.291 Sum_probs=67.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++.+... ..
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~~----------------------------~~------- 189 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKLP----------------------------LG------- 189 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCcccc----------------------------cC-------
Confidence 47999999999999999999876 7 8999999864210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++.++.||+|++.+|.. .++.++ ++....+++ ++++|.+..|-
T Consensus 190 ------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 242 (409)
T PRK11790 190 ------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRGT 242 (409)
T ss_pred ------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCCc
Confidence 1223357888999999999999975 355555 334445676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 243 ~vd 245 (409)
T PRK11790 243 VVD 245 (409)
T ss_pred ccC
Confidence 543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00042 Score=63.74 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=63.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|+|+ |.||..++..+....+ .++. +++++++.... . .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~----- 44 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-G----- 44 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-C-----
Confidence 489999999 9999999988876412 4544 57777653321 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. ..+..++|++++++++|+||.++|+....+.+..... . +..++.-+-|+
T Consensus 45 ----~--------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~---~---G~~vvigttG~ 94 (257)
T PRK00048 45 ----A--------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALE---H---GKPLVIGTTGF 94 (257)
T ss_pred ----C--------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 0 1234557888877789999999988877666655443 2 44455446576
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00071 Score=54.91 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=60.3
Q ss_pred eEEEEC-CChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 45 kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|+| .|++|..+...|+++ -. .+ +.+++++++.-..+ ... .+ .....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~----~e~~~~~~~~~~~g~~~---------~~~---------~~-~~~~~----- 51 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PD----FELVALVSSSRSAGKPL---------SEV---------FP-HPKGF----- 51 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-ST----EEEEEEEESTTTTTSBH---------HHT---------TG-GGTTT-----
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CC----ccEEEeeeeccccCCee---------ehh---------cc-ccccc-----
Confidence 799999 799999999999986 31 45 44556555221111 100 00 00100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+.+.. +.+ .+.++|+||+|+|.....+..+++ ++. +..||.++.-+
T Consensus 52 -----------------------~~~~~~~~~~~-~~~~~Dvvf~a~~~~~~~~~~~~~---~~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 52 -----------------------EDLSVEDADPE-ELSDVDVVFLALPHGASKELAPKL---LKA---GIKVIDLSGDF 100 (121)
T ss_dssp -----------------------EEEBEEETSGH-HHTTESEEEE-SCHHHHHHHHHHH---HHT---TSEEEESSSTT
T ss_pred -----------------------cceeEeecchh-HhhcCCEEEecCchhHHHHHHHHH---hhC---CcEEEeCCHHH
Confidence 0233333 443 468999999999999888888876 344 67888877655
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00066 Score=66.10 Aligned_cols=111 Identities=12% Similarity=0.113 Sum_probs=67.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~--~V~l~--~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
++.||+|||+ |.+|+++|..++.. |.+..+. .+.|+ |++++.++... +. +.+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~g~a-------~D---------------L~d 99 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALEGVA-------ME---------------LED 99 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhhHHH-------HH---------------HHH
Confidence 3699999999 99999999999987 7543112 34445 77776554210 10 110
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--h------------hHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--T------------ETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--~------------~~~~vl~~l 180 (303)
. .+ + .+.++.++++..+++++||+||++- |. . .++++.+.|
T Consensus 100 ~-------a~------~----------~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I 156 (387)
T TIGR01757 100 S-------LY------P----------LLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKAL 156 (387)
T ss_pred h-------hh------h----------hcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0 0013554555556789999999965 21 1 255566666
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ +.+++..+|.+.
T Consensus 157 ~~~a~~---~~iviVVsNPvD 174 (387)
T TIGR01757 157 NAVASK---NCKVLVVGNPCN 174 (387)
T ss_pred HHhCCC---CeEEEEcCCcHH
Confidence 666545 677877887653
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00094 Score=58.55 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=49.0
Q ss_pred eEEEECCChHHHH--HHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 45 RIVGVGAGAWGSV--FTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 45 kI~VIGaG~mG~a--iA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+|||+|+.-.. +-..+... ..+.. .++.|+|+++++++.+. .+.+.+ .+..
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~~-~ei~L~Did~~RL~~~~--~~~~~~----------------~~~~----- 55 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELSG-SEIVLMDIDEERLEIVE--RLARRM----------------VEEA----- 55 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTSTE-EEEEEE-SCHHHHHHHH--HHHHHH----------------HHHC-----
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCCC-cEEEEEcCCHHHHHHHH--HHHHHH----------------HHhc-----
Confidence 8999999986554 33334433 22332 58999999998887532 111111 1110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~ 171 (303)
.. ...+..|+|.++|+++||+||.++-..
T Consensus 56 --~~------------------~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 56 --GA------------------DLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp --TT------------------SSEEEEESSHHHHHTTESEEEE---TT
T ss_pred --CC------------------CeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 00 025788999999999999999998653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00042 Score=65.17 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.+|++|+|+|.+|.+++..|... | .+|++++|++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~~ 188 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAHL 188 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHH
Confidence 48999999999999999999887 8 7999999997643
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00065 Score=67.05 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=70.5
Q ss_pred ceEEEECCChH-HHHHHHHHHHhcC-CCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAW-GSVFTAMLQDSYG-YLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~m-G~aiA~~La~~~G-~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+. ...+...|+.. . .+.. .+|.|+|.++++++.+. .+.+.+ .+..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~-~~~l~~-~ei~L~Did~~Rl~~v~--~l~~~~----------------~~~~---- 56 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKT-PEELPI-SEVTLYDIDEERLDIIL--TIAKRY----------------VEEV---- 56 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcC-hhhCCC-CEEEEEcCCHHHHHHHH--HHHHHH----------------HHhh----
Confidence 79999999983 33344445543 2 1322 68999999998776421 111111 1100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------------------------
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------ 171 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------------------------ 171 (303)
+. . ..+..|+|.++|+++||+||.++-..
T Consensus 57 g~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~ 115 (425)
T cd05197 57 GA-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFS 115 (425)
T ss_pred CC-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhh
Confidence 00 0 15788999999999999999988431
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 ------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|.+..
T Consensus 116 alrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 116 GLRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 34566677776654 6889999988654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00073 Score=63.99 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=29.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
|||+|||+ |.+|+++|..|+.. |. . .++.|+|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~-~--~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PL-V--SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CC-C--cEEEEEecC
Confidence 79999999 99999999999887 62 1 479999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=65.85 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=66.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 348999999999999999998654 7 78999988532100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.. .++++.++.||+|++++|-. .++.++ ++.-..+++ ++++|.+..|
T Consensus 184 -------------------------~~~~-~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYER-VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Ccee-ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 1111 36888899999999999975 344444 223344676 8899988888
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 235 ~vVD 238 (311)
T PRK08410 235 GIVN 238 (311)
T ss_pred cccC
Confidence 5554
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00078 Score=64.14 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~ 82 (303)
.||+|+|| |.+|+.+|..|+.. |.+. ...++.|+|+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 38999999 99999999999987 6432 113699999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00029 Score=67.02 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=63.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
..+..+++|||+|.+|...+..+... - +-.+|.+|+|++++.+++.++ +...
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~~~~~----------------------~~~~-- 176 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREKFALR----------------------ASDY-- 176 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHHH----------------------HHhh--
Confidence 34568999999999999977777553 1 116899999999876542110 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
. ..+....+.++++++||+|+.|+|+.. .++. ..++++ ++.|.+
T Consensus 177 -----g--------------------~~v~~~~~~~eav~~aDiVitaT~s~~--P~~~--~~~l~~---g~~v~~ 220 (325)
T TIGR02371 177 -----E--------------------VPVRAATDPREAVEGCDILVTTTPSRK--PVVK--ADWVSE---GTHINA 220 (325)
T ss_pred -----C--------------------CcEEEeCCHHHHhccCCEEEEecCCCC--cEec--HHHcCC---CCEEEe
Confidence 0 135567889999999999999998853 2221 234566 666543
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=65.69 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+++|||+|.+|...+..++...+. .+|.+|+|++++.+++.+ .+... . +
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~----~~v~v~~r~~~~a~~~~~-----~~~~~-------------~-~---- 177 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI----ERVRVYSRTFEKAYAFAQ-----EIQSK-------------F-N---- 177 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc----cEEEEECCCHHHHHHHHH-----HHHHh-------------c-C----
Confidence 3567999999999999988777643131 589999999987654221 11100 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+....+.+++++++|+|+.|+|+.. .++. .++++ ++.|+++
T Consensus 178 -------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i 220 (325)
T PRK08618 178 -------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV 220 (325)
T ss_pred -------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence 023455778888999999999999883 3333 44566 6665543
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00059 Score=65.00 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=57.8
Q ss_pred cCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 38 ~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
......++|+|||+|.+|.+.+..++...+. .+|.+|+|++++.+++.++ ++. .+ +
T Consensus 127 la~~~~~~v~IiGaG~~a~~~~~al~~~~~~----~~V~v~~R~~~~a~~l~~~-----~~~-------------~~-g- 182 (330)
T PRK08291 127 LAREDASRAAVIGAGEQARLQLEALTLVRPI----REVRVWARDAAKAEAYAAD-----LRA-------------EL-G- 182 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEcCCHHHHHHHHHH-----Hhh-------------cc-C-
Confidence 3444568999999999999988888753131 5899999999877643211 100 00 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~ 171 (303)
..+....|+++++.++|+|+.|+|+.
T Consensus 183 ----------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 ----------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred ----------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02445678888899999999999986
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00032 Score=67.42 Aligned_cols=108 Identities=23% Similarity=0.207 Sum_probs=67.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|+...... ..+ .+.. .....+ .
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~---~~~--~~~~------------~~~~~~----~ 211 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE---DGL--LIPN------------GDVDDL----V 211 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh---hhh--cccc------------cccccc----c
Confidence 37999999999999999999876 8 899999987431100 000 0000 000000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+ ... ...++++++++||+|++++|.. ..+.++ ++....+++ ++++|.+..|-
T Consensus 212 ~----------------------~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG~ 265 (347)
T PLN02928 212 D----------------------EKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARGG 265 (347)
T ss_pred c----------------------ccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCcc
Confidence 0 001 1247888999999999999975 344444 233444676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 266 lVd 268 (347)
T PLN02928 266 LLD 268 (347)
T ss_pred ccC
Confidence 544
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=62.47 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 32 LRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 32 ~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||.-..+-.....||+|+|+ |.+|+.+|..|+.. +.. .++.|+|+++
T Consensus 7 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 7 LRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 44444555566789999999 99999999999977 622 4799999987
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00046 Score=62.34 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=35.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+|+|+|+|.+|..+|..|.+. | |+|++++++++.+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHH
Confidence 7999999999999999999999 8 999999999987653
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=61.39 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
||||+|||+|+||..++..+.+.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC
Confidence 58999999999999999998765
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=63.81 Aligned_cols=101 Identities=15% Similarity=0.172 Sum_probs=75.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+.|++||.|.||+-+|.-++.+ | +.|.+|.|+.++.++.- +.+ + ..+
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~f~--------~~~----------~-~~k-------- 50 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDEFL--------AER----------A-KGK-------- 50 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHHHH--------HhC----------c-cCC--------
Confidence 5799999999999999999999 9 89999999998877532 211 0 011
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec---CHHHHhcCCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT---NLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~---d~~~a~~~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
++..+. +....++...-|++=|+. ..+++++++|.|++.+ +-+||.--|.
T Consensus 51 -----------------------~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGNs 104 (473)
T COG0362 51 -----------------------NIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGNS 104 (473)
T ss_pred -----------------------CccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCCc
Confidence 122222 334456778899999988 4679999999999998 7788876666
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
.-.+
T Consensus 105 ~y~D 108 (473)
T COG0362 105 HYKD 108 (473)
T ss_pred CCch
Confidence 5554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00059 Score=68.89 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=42.8
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...+..+..++...-..++|+|||+|.||..++..|... |. .+|++++|+.++.+.
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~~ 305 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVAA 305 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHHH
Confidence 455556666664333458999999999999999999987 71 379999999876653
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00069 Score=60.96 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=57.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|+|++||+|++|..+...+-. |..+- .-|.+|||+++++.++. ..+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~--~~~~~-e~v~v~D~~~ek~~~~~-------------------------~~~------ 46 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRD--GRVDF-ELVAVYDRDEEKAKELE-------------------------ASV------ 46 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhc--CCcce-eEEEEecCCHHHHHHHH-------------------------hhc------
Confidence 689999999999999887754 32111 34788999988664310 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
....++++++.+++.|++++|-.++++++...++..
T Consensus 47 -----------------------~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 47 -----------------------GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred -----------------------CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 112236777777899999999988888887777643
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00097 Score=58.39 Aligned_cols=100 Identities=19% Similarity=0.320 Sum_probs=69.4
Q ss_pred CCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHH-HHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhh
Q 022050 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINS 99 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~-La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~ 99 (303)
.|..+.=+++|+.+++-.+ +-|+.+||+|++|.|++.+ +.+++| .+ +-++|.+++.+-.
T Consensus 65 GYnV~~L~~ff~~~Lg~~~--~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~------------ 125 (211)
T COG2344 65 GYNVKYLRDFFDDLLGQDK--TTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT------------ 125 (211)
T ss_pred CccHHHHHHHHHHHhCCCc--ceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc------------
Confidence 4566777888888887665 5789999999999999877 443324 44 4568888864321
Q ss_pred hhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHH
Q 022050 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVF 177 (303)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl 177 (303)
...++ +++-.+++++-++ +.|+.|++||+..-++++
T Consensus 126 -------------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~va 163 (211)
T COG2344 126 -------------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVA 163 (211)
T ss_pred -------------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHH
Confidence 11110 2333355665555 789999999999999898
Q ss_pred HHHHH
Q 022050 178 EEISR 182 (303)
Q Consensus 178 ~~l~~ 182 (303)
+.|..
T Consensus 164 d~Lv~ 168 (211)
T COG2344 164 DRLVK 168 (211)
T ss_pred HHHHH
Confidence 88764
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0013 Score=62.31 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.6
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||+|||+ |.+|+++|..|+.+ +.. .++.|+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence 7999999 99999999999887 621 3799999987
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00065 Score=66.76 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|||.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 7899999999999999999988 8 899999999876654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=63.48 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=34.3
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCC--e--eEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--V--LIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~--~--~V~l~~r~~~~~~ 86 (303)
.+-||+|||+ |.+|+++|..|+.. +.|..+ . ++.++|++++.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence 3589999999 99999999999876 433311 1 6889999988764
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00094 Score=63.57 Aligned_cols=96 Identities=20% Similarity=0.197 Sum_probs=66.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|..+|..+....| .+|..|+|....-. ...
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~~~---------------------------~~~------ 186 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHKEA---------------------------EER------ 186 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCchhh---------------------------HHh------
Confidence 4899999999999999999862226 78888887642100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
...+. .++++.++.||+|++++|-. .++.++ ++....+++ ++++|.+..|=
T Consensus 187 -----------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 239 (323)
T PRK15409 187 -----------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRGP 239 (323)
T ss_pred -----------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCcc
Confidence 01222 36888899999999999975 355555 233444676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 vVd 242 (323)
T PRK15409 240 VVD 242 (323)
T ss_pred ccC
Confidence 554
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=64.67 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=68.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..++...| .+|..|++....... . .... .+..+...
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~---~----~~~~----------~~~~l~~~----- 217 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE---K----FVTA----------YGQFLKAN----- 217 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh---h----hhhh----------hccccccc-----
Confidence 4899999999999999999864336 789999987632100 0 0000 00000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
... ...++...+++++++.||+|++++|-. .++.++. +....+++ ++++|.+..|=
T Consensus 218 --~~~-----------------~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG~ 275 (386)
T PLN02306 218 --GEQ-----------------PVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRGP 275 (386)
T ss_pred --ccc-----------------cccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 000 001223457899999999999999865 4555552 33445676 88999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 276 lVD 278 (386)
T PLN02306 276 VID 278 (386)
T ss_pred ccC
Confidence 444
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=61.30 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|||| |.+|++++..++...+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 168999999854
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=60.82 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=31.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
+.||+|+|| |.+|+.++..|+.. +.+. ...+|.++|+++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCCc
Confidence 579999999 99999999999886 5331 1148999999763
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=57.79 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.-|+|+|+|.|+||..+|..|.+. | ++|+++|++++.++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 348999999999999999999998 9 89999999876543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=61.25 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=30.3
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|.||+|+|+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 5679999999 99999999999866 521 589999993
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0013 Score=62.77 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=66.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|.++|+.+..- | .+|..|+|.+. -+. .+.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~F-g-----m~v~y~~~~~~-~~~--------------------------~~~------ 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGF-G-----MKVLYYDRSPN-PEA--------------------------EKE------ 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCCC-hHH--------------------------Hhh------
Confidence 38999999999999999999843 6 78999999874 110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++.. +++.++++|+|.+.+|.. ....++ ++....+++ +.++|.+..|=
T Consensus 187 -----------------------~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 187 -----------------------LGARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred -----------------------cCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 0133333 788899999999999986 355555 233344676 78888887775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 240 ~VD 242 (324)
T COG1052 240 LVD 242 (324)
T ss_pred ccC
Confidence 544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=63.67 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=49.3
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 5678889988888777789999999999999999999988 7 899999999986654
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00085 Score=63.66 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=64.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|+|..... .
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~~---------------------------~--------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRPA---------------------------R--------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCcc---------------------------c---------
Confidence 47999999999999999998755 7 7899888753200 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ..++++.++.||+|++++|-. .++.++ ++.-..+++ ++++|.+..|=
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG~ 236 (317)
T PRK06487 186 -------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARGG 236 (317)
T ss_pred -------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCcc
Confidence 00 125778889999999999975 455555 223344676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 vVd 239 (317)
T PRK06487 237 LVD 239 (317)
T ss_pred ccC
Confidence 554
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=62.56 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=35.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
....++++|||+|.+|...+..++...+. .+|.+|+|++++.++
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~----~~v~v~~r~~~~a~~ 165 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPV----RRVWVRGRTAASAAA 165 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC----CEEEEEcCCHHHHHH
Confidence 34568999999999999999999753131 579999999887654
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0026 Score=60.67 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.8
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCc
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (303)
||+|||+ |.+|+.+|..|+.. |.+. +..++.|+|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6432 2237999999764
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=63.63 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=65.1
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.....+++|||+|..+..-+..++.-.. -.+|++|+|++++.+++.++ ++. .+
T Consensus 126 r~da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~~~~~-----~~~---------------~~--- 178 (346)
T PRK07589 126 RPDSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAKLARN-----LAG---------------PG--- 178 (346)
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHHHHHH-----HHh---------------cC---
Confidence 3456899999999999888877765311 16899999999876542210 000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
.++.+..+.++++++||+|+.++++.....+++ ..++++ ++.|.
T Consensus 179 --------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~--~~~lkp---G~hV~ 222 (346)
T PRK07589 179 --------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILT--DDMVEP---GMHIN 222 (346)
T ss_pred --------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceec--HHHcCC---CcEEE
Confidence 135667889999999999999998754323333 145666 66544
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=63.81 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=47.1
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
||||..... ....-|+=+.=+|-+.|..+..- .-++++|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 221 vnds~~K~~-fDn~yGtgqS~~d~i~r~t~i~L-aGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~r 289 (477)
T PLN02494 221 VNDSVTKSK-FDNLYGCRHSLPDGLMRATDVMI-AGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPIC 289 (477)
T ss_pred EcChhhhhh-hhccccccccHHHHHHHhcCCcc-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 677665432 22222322333666766655432 238999999999999999999876 8 789999998754
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.002 Score=60.18 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=44.8
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|-++=.|-.-.-=...|+... .....+|++|+|+|.+|.+++..|+.. |. .+|++++|++++.+.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 35544444444333333333221 122347999999999999999999988 82 379999999877654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0039 Score=61.13 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=45.8
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
||||..... ....-|+=+.-++.+.|.....- .-++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~l-~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~r 230 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLLI-AGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPIR 230 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCCC-CcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChhh
Confidence 566654432 12112333445555555443222 337999999999999999999877 8 789999998854
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=62.82 Aligned_cols=96 Identities=26% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+....++|||+|..+..-...+..-.+ -.+|.+|+|+++..++... . +..
T Consensus 127 ~~da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~~a~-----~-----------------l~~--- 177 (330)
T COG2423 127 RKDASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEAFAA-----R-----------------LRK--- 177 (330)
T ss_pred cCCCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHHHHH-----H-----------------HHh---
Confidence 3456889999999999999998876412 1589999999987764221 0 110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
.+. ..+....+.++++++||+|+-++|+.. .+++ ..++++ ++.|.
T Consensus 178 -----~~~------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~--~~~l~~---G~hI~ 222 (330)
T COG2423 178 -----RGG------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLK--AEWLKP---GTHIN 222 (330)
T ss_pred -----hcC------------------ccceeccCHHHHhhcCCEEEEecCCCC--Ceec--HhhcCC---CcEEE
Confidence 000 135677889999999999999999987 2332 245666 66544
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=62.79 Aligned_cols=91 Identities=23% Similarity=0.262 Sum_probs=64.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++..... ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~~~----------------------------~~------- 185 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGASV----------------------------CR------- 185 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcccc----------------------------cc-------
Confidence 37999999999999999988654 7 7888887643100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ..+++++++.||+|++++|-. .++.++ ++....+++ ++++|.+..|-
T Consensus 186 -------------------------~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 236 (314)
T PRK06932 186 -------------------------EG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRGP 236 (314)
T ss_pred -------------------------cc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCcc
Confidence 00 135788899999999999965 355544 223344676 78999888875
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 237 ~Vd 239 (314)
T PRK06932 237 LVD 239 (314)
T ss_pred ccC
Confidence 554
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0048 Score=60.69 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=47.6
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||||..... ....-|+=+.-++.+.|..+..- .-.+|+|+|+|.+|..++..+... | .+|+++++++.++
T Consensus 169 vnds~~K~~-~dn~~g~g~s~~~~i~r~t~~~l-~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R~ 238 (413)
T cd00401 169 VNDSVTKSK-FDNLYGCRESLIDGIKRATDVMI-AGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPICA 238 (413)
T ss_pred ecchhhccc-ccccchhchhhHHHHHHhcCCCC-CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhhH
Confidence 566654332 22222233444566666655433 237999999999999999999887 8 7899999988654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0011 Score=65.32 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|+|+|+|.||..++..|... |. .+|++++|++++.+
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-G~----~~V~v~~r~~~ra~ 220 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-GV----RKITVANRTLERAE 220 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-CC----CeEEEEeCCHHHHH
Confidence 37999999999999999999887 71 37999999986553
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=58.03 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHH--HhcCCCCCCeeEE-EEecCCch
Q 022050 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ--DSYGYLRDKVLIR-IWRRPGRS 84 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La--~~~G~~~~~~~V~-l~~r~~~~ 84 (303)
.|.+.+=++.+|..+++.. ..+|+|||+|.+|..++..+. .. | +++. ++|+++++
T Consensus 65 gy~v~~l~~~~~~~l~~~~--~~rV~IIGaG~iG~~l~~~~~~~~~-g-----~~ivgv~D~d~~~ 122 (213)
T PRK05472 65 GYNVEELLEFIEKILGLDR--TWNVALVGAGNLGRALLNYNGFEKR-G-----FKIVAAFDVDPEK 122 (213)
T ss_pred CeeHHHHHHHHHHHhCCCC--CcEEEEECCCHHHHHHHHhhhcccC-C-----cEEEEEEECChhh
Confidence 4667777788888887763 478999999999999998643 23 4 4544 57777643
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0034 Score=62.22 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=70.0
Q ss_pred ceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|+. +..+...|+.....+.. .+|.|+|.++++++.+. .+.+.+ .+..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~-~ei~L~DId~~rl~~v~--~l~~~~----------------~~~~----- 56 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPL-RELVLYDIDAERQEKVA--EAVKIL----------------FKEN----- 56 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCC-CEEEEECCCHHHHHHHH--HHHHHH----------------HHhh-----
Confidence 79999999974 11233344433001221 58999999998876522 111111 1100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-------------------------------
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------------------------- 171 (303)
.. ...+..|+|.++|+++||+||.++-..
T Consensus 57 --g~------------------~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~a 116 (437)
T cd05298 57 --YP------------------EIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYG 116 (437)
T ss_pred --CC------------------CeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHH
Confidence 00 015888999999999999999987431
Q ss_pred -----hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 -----~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|....
T Consensus 117 lRtip~~~~i~~~i~~~~p----da~lin~tNP~~~ 148 (437)
T cd05298 117 LRSIGPMIELIDDIEKYSP----DAWILNYSNPAAI 148 (437)
T ss_pred HhhHHHHHHHHHHHHHHCC----CeEEEEecCcHHH
Confidence 35567777777654 6899999988764
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0042 Score=61.22 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=67.8
Q ss_pred ceEEEECCChHHH-HHHHHHHHhcCCCCCCeeEEEEecC-CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V~l~~r~-~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+.-+ .+...|+...-.+.. .+|.|+|.+ +++++.+. . ..+. +....
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~-~ei~L~Did~~~rl~~v~--~---~~~~-------------~~~~~---- 57 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPV-TELVLVDIDEEEKLEIVG--A---LAKR-------------MVKKA---- 57 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCC-CEEEEecCChHHHHHHHH--H---HHHH-------------HHHhh----
Confidence 7999999998533 334445542011221 589999999 67665321 1 1110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----h-------------------------
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-----T------------------------- 171 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-----~------------------------- 171 (303)
.. ...+..|+|.++|+++||+||.++-. .
T Consensus 58 ---~~------------------~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~ 116 (419)
T cd05296 58 ---GL------------------PIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAK 116 (419)
T ss_pred ---CC------------------CeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHH
Confidence 00 02578899999999999999998732 1
Q ss_pred ------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 ------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 ------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++.+ ++.++..+|.+..
T Consensus 117 a~rni~ii~~i~~~i~~~~P----da~lin~TNP~~i 149 (419)
T cd05296 117 ALRTIPVILDIAEDVEELAP----DAWLINFTNPAGI 149 (419)
T ss_pred hhhhHHHHHHHHHHHHHHCC----CeEEEEecCHHHH
Confidence 23455566666553 6888988887654
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=48.75 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=32.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
.+||+|+|+|.+|+.+|..|+.. |. .+++++|.+.=....+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~v~~~nl 42 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDIVEPSNL 42 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSBB-GGGC
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcceeeccc
Confidence 37899999999999999999999 83 4899999986444333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.004 Score=61.44 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
-++|+|+|+|.+|..+|..+... | .+|+++++++.+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~r 247 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPIC 247 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCchh
Confidence 37999999999999999999887 8 789999998864
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0014 Score=61.73 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.9
Q ss_pred CceEEEECCC-hHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG-~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|+|||.| .||..+|..|.++ | +.|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 3899999996 9999999999998 8 899999765
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0031 Score=60.46 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+..++|+||+|+|.....++..++.. . +..||++++.+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45689999999999988877777643 3 6789998877655
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=60.34 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+.....+++|||+|.+|.+.+..|+...+. .+|++|+|++++.+++.++ +.. .+ +
T Consensus 125 a~~~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~~a~~-----~~~-------------~~-g-- 179 (326)
T TIGR02992 125 AREDSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEALALQ-----LSS-------------LL-G-- 179 (326)
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHHHHHH-----HHh-------------hc-C--
Confidence 334557999999999999999999742141 4799999999876542210 100 00 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~ 172 (303)
..+....++++++.+||+|+.|+|+..
T Consensus 180 ---------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ---------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ---------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456788888999999999999853
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.008 Score=58.40 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=105.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|.+|.|+|+|..+..+|..+.+. + +..|-++.|...+.++ +.+.+......++....|+.. ..+
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq~-----f~~aL~~~~~~~~v~vqn~~h-~~l----- 64 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQR-----FFEALARSDGLFEVSVQNEQH-QAL----- 64 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHHH-----HHHHHHhCCCEEEEeecchhh-hhh-----
Confidence 56899999999999999999876 5 2579999996654433 222222210000000001100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+|-+ .+ .+..+.++...+.|.+|+|||..+..+|+++|..-.-+. -..+|-++..++
T Consensus 65 -----------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~--vk~iVLvSPtfG 122 (429)
T PF10100_consen 65 -----------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR--VKSIVLVSPTFG 122 (429)
T ss_pred -----------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh--CCEEEEECcccc
Confidence 0100 11 133567777778999999999999999999987543222 234444554454
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCce----------EEEE-e--CChhhHHHHHHHhcC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYA----------NARI-C--GAEKWRKPLAKFLRR 266 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~----------~~~~-~--~~~~~~~~i~~lf~~ 266 (303)
.. .+++..+......+.+++=-+. +..+..+.+. .+.+ + .+......++.+|..
T Consensus 123 S~-----------~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~ 191 (429)
T PF10100_consen 123 SH-----------LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQ 191 (429)
T ss_pred hH-----------HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhhceEEEEeCCCCChHHHHHHHHHHH
Confidence 43 2233333211111233321111 1111122110 1122 2 234578999999999
Q ss_pred CCeEEEecCChhHHHH
Q 022050 267 PHFTVWDNGDLVTHEV 282 (303)
Q Consensus 267 ~g~~~~~~~Di~g~e~ 282 (303)
.|+.+..-+....+|-
T Consensus 192 ~gI~~~~~~~pl~AE~ 207 (429)
T PF10100_consen 192 LGIQLEVMDNPLEAES 207 (429)
T ss_pred cCCeEEEeCChHhhhh
Confidence 9999998888877764
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0069 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
||+|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 4799999987
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=53.01 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=34.7
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+.-+|-++|-....-.. ++++|+|.|..|..+|..|... | .+|++++++|-
T Consensus 7 ~S~~d~i~r~t~~~l~G-k~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 7 QSLVDGIMRATNLMLAG-KRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHHH-S--TT-SEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred hhHHHHHHhcCceeeCC-CEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 33455555554443333 7899999999999999999888 8 89999999984
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0036 Score=50.57 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=31.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 159 ~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++|+||+++|.....+++..+.+.+.+ +++++.++.-+.
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCcccc
Confidence 4899999999999988888766655566 788888775544
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0077 Score=46.93 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=54.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|++|+|+|..|.+++..+....| +. +.++|.+++...+ ...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g-----~~i~~~~dv~~~~~G~-------------------------~i~------ 46 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRG-----FGIVAVFDVDPEKIGK-------------------------EIG------ 46 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHC-----ECEEEEEEECTTTTTS-------------------------EET------
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcC-----CCCEEEEEcCCCccCc-------------------------EEC------
Confidence 4689999999999999865555435 44 5678988864321 111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
.+.+..+.+++.+. .|+.+++||+...++++.++..
T Consensus 47 -------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 -------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp -------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred -------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 34444455555444 9999999999999888888765
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0042 Score=57.36 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++++|+|+|.+|.+++..|++. | .+|++++|++++++.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~~ 155 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAEE 155 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47899999999999999999998 8 799999999876543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0067 Score=53.79 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||.|+|+|.+|+.+|..|+.. |. .+++++|++.-....+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~ve~sNL 61 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDHVDLSNL 61 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCEEcccch
Confidence 37899999999999999999998 82 4899999986433333
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.003 Score=59.92 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=66.5
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+..+..+++|||+|..+..-+..++.- - +-.+|.+|+|++++.++... .+ +..
T Consensus 124 a~~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~~~~-----~~-----------------~~~- 176 (315)
T PRK06823 124 APQHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEEYRQ-----YA-----------------QAL- 176 (315)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHHHHH-----HH-----------------Hhc-
Confidence 345678999999999999998887764 1 12589999999987764221 00 000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
. ..+...++.++++++||+|+.++++.. .+++ ..++++ ++.|..
T Consensus 177 ------~--------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~ 220 (315)
T PRK06823 177 ------G--------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITA 220 (315)
T ss_pred ------C--------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEe
Confidence 0 135667889999999999999998764 3332 235666 666543
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=58.35 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=51.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+||+|||+|+||..++..+... + .. +.+ +.+++|++++.+++ .+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-~-~~-~~~l~~V~~~~~~~~~~~--------------------------~~------ 47 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-A-AQ-PCQLAALTRNAADLPPAL--------------------------AG------ 47 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-C-CC-ceEEEEEecCCHHHHHHh--------------------------hc------
Confidence 7999999999999999998754 2 10 133 34566665433210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a-~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
...+.+|+++. .+.+|+|++|-.++.+++....+..
T Consensus 48 ------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 ------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred ------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 12244566664 4678888888888887777776543
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0028 Score=59.98 Aligned_cols=98 Identities=24% Similarity=0.324 Sum_probs=56.5
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+++|||+|..|..-+..++.-.+ -.+|.+|+|++++.+++..+ ++ . + +
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~~~~~-----~~-------------~-~-~---- 177 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEAFAAR-----LR-------------D-L-G---- 177 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHHHHHH-----HH-------------C-C-C----
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHHHHHh-----hc-------------c-c-c----
Confidence 345799999999999999988876422 15899999999876542210 10 0 0 1
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+....|.++++++||+|+.|+|+.....+++ ..++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~~av~~aDii~taT~s~~~~P~~~--~~~l~~---g~hi~~i 223 (313)
T PF02423_consen 178 -------------------------VPVVAVDSAEEAVRGADIIVTATPSTTPAPVFD--AEWLKP---GTHINAI 223 (313)
T ss_dssp -------------------------TCEEEESSHHHHHTTSSEEEE----SSEEESB---GGGS-T---T-EEEE-
T ss_pred -------------------------ccceeccchhhhcccCCEEEEccCCCCCCcccc--HHHcCC---CcEEEEe
Confidence 146778899999999999999999875212222 235566 6655443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0052 Score=57.89 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.2
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|.+|+++|..|+.. +.. .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 699999999999999987 732 37999999887654
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=59.43 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=64.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+..+++|||+|..|..-+..++.-.. -.+|.+|+|++++.+++.+ .+.+ .+ +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~f~~-----~~~~-------------~~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARAFAE-----RFSK-------------EF-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHHHHH-----HHHH-------------hc-C-----
Confidence 56899999999999998888876312 1589999999987764321 1110 00 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+....++++++++||+|+-++++.. .+++ ..++++ ++.|.
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~--P~~~--~~~l~p---g~hV~ 209 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT--PIFN--RKYLGD---EYHVN 209 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC--cEec--HHHcCC---CceEE
Confidence 136667889999999999999999863 2332 235566 55543
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.012 Score=48.83 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=31.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.|+|+|.+|+.++..|+.. |. ..++++|.+.-...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCCcCcc
Confidence 689999999999999999998 83 47999998854333
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.005 Score=57.18 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=45.0
Q ss_pred CcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+|-++=.|-.-.--+..+++..+. ....+++.|+|+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 96 ~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~~ 162 (278)
T PRK00258 96 DGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAEE 162 (278)
T ss_pred CCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 444443444444444445432222 12347899999999999999999987 72 589999999876643
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0078 Score=53.23 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.-
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCcc
Confidence 37899999999999999999999 93 57999998853
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0042 Score=59.12 Aligned_cols=95 Identities=22% Similarity=0.360 Sum_probs=62.1
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....+|+|||+|.+|...+..++...+ + ..|.+|+|++++.+++..+ ++ +
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~-i---~~v~v~~r~~~~~~~~~~~-----~~----------------~----- 176 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFD-L---EEVRVYDRTKSSAEKFVER-----MS----------------S----- 176 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCC-c---eEEEEECCCHHHHHHHHHH-----HH----------------h-----
Confidence 456899999999999999988875412 1 5799999998776542210 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
.++ ..+....|.+++++ +|+|+.|+|+.. .+++ ..++++ ++.|.+
T Consensus 177 ----~~~------------------~~v~~~~~~~~~l~-aDiVv~aTps~~--P~~~--~~~l~~---g~hV~~ 221 (326)
T PRK06046 177 ----VVG------------------CDVTVAEDIEEACD-CDILVTTTPSRK--PVVK--AEWIKE---GTHINA 221 (326)
T ss_pred ----hcC------------------ceEEEeCCHHHHhh-CCEEEEecCCCC--cEec--HHHcCC---CCEEEe
Confidence 000 12455678888886 999999999863 2222 234565 666543
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0039 Score=59.50 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=65.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
++|+|+|+|.+|.++|..|..- | ..+.-+.|++...+.. .+ +.
T Consensus 163 K~vgilG~G~IG~~ia~rL~~F-g-----~~i~y~~r~~~~~~~~--------~~--------------~~--------- 205 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPF-G-----CVILYHSRTQLPPEEA--------YE--------------YY--------- 205 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhc-c-----ceeeeecccCCchhhH--------HH--------------hc---------
Confidence 7999999999999999999875 5 4555556655422210 00 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
-. ..|..+.+.++|+|+++.|-. .++.++ +++-.++++ +.+||.+..|=.
T Consensus 206 ------------------------~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~i 257 (336)
T KOG0069|consen 206 ------------------------AE-FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGAI 257 (336)
T ss_pred ------------------------cc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEecccccc
Confidence 00 134566778999999999996 467666 345666777 788888887755
Q ss_pred cc
Q 022050 202 AE 203 (303)
Q Consensus 202 ~~ 203 (303)
.+
T Consensus 258 id 259 (336)
T KOG0069|consen 258 ID 259 (336)
T ss_pred cc
Confidence 54
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0023 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=33.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..+|+|+|+|.||..++..|... |. .+|++++|+.++.+
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERAE 218 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 37899999999999999999887 72 57999999986543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0024 Score=62.83 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.++..++.++... .+||.|||+|.||.+++..|+.. |. .+++++.|+.++.+.
T Consensus 167 ~Av~la~~~~~~l~--~kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~~ 220 (414)
T PRK13940 167 SAITLAKRQLDNIS--SKNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQK 220 (414)
T ss_pred HHHHHHHHHhcCcc--CCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 34455556664433 26899999999999999999988 72 479999999876543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0056 Score=61.06 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
-++++|+|.|.+|..+|..+... | .+|+++++++..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~~ 289 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPIC 289 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCchh
Confidence 37999999999999999999887 8 789999988754
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0079 Score=57.78 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.4
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++...++|+||+|+|.....++..++.. . ++.||++++.+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 444544689999999999988877777643 3 6788888876544
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0039 Score=58.66 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~ 79 (303)
-++|+||| .|.||..+|..|.++ | +.|++|+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 48999999 999999999999998 8 8999995
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0068 Score=52.97 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=34.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+ |.+|..++..|++. | ++|++++|+.++++.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~~ 67 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQK 67 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 379999996 99999999999998 8 899999999776543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0098 Score=48.13 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=52.9
Q ss_pred ceEEEEC----CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 44 ~kI~VIG----aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
++|+||| .+.+|..+...|.++ | ++|+.+....+.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999998 8 88888877654221
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
..+...++++.-...|++++++|+....++++++...
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 2334445555336789999999999999999998764
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0054 Score=59.76 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|||+|+|| |..|..+...|..+ . .++++.+.++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChhh
Confidence 5689999999 99999999999876 3 268888887543
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0081 Score=57.21 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~ 82 (303)
++||+|+|+|+||...+..+.++.+ .++. ++++++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 5554 578875
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0096 Score=56.12 Aligned_cols=40 Identities=20% Similarity=0.158 Sum_probs=32.1
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.+|..|+.. |. .+++++|.+.-....++
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GV----g~ItlvD~D~Ve~sNL~ 40 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GV----RHITFVDSGKVSYSNPV 40 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEeccccCC
Confidence 689999999999999999998 93 57899988754333333
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0081 Score=50.06 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++..+ ..... .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~~---------------------~~~v~---d 65 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKLG---------------------LNAFV---D 65 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHhC---------------------CeEEE---C
Confidence 3899999999 999999999998 8 99999999998765432110 00000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~ 186 (303)
.+ +..++ +..++||+|.-.=|+..+..-+-+|++.+..
T Consensus 66 ------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 66 ------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 01 12233 3467999999999998887777778876664
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.019 Score=53.16 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.+....||.|+|+|.+|.+.|..+..+ |. . .++.++|-++++++- +.+.-+| ...+++
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-~L-a--del~lvDv~~dklkG-------E~MDLqH--------~s~f~~--- 73 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-GL-A--DELVLVDVNEDKLKG-------EMMDLQH--------GSAFLS--- 73 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-hh-h--hceEEEecCcchhhh-------hhhhhcc--------cccccc---
Confidence 333457999999999999999998877 62 2 479999999987642 1111110 000000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch------------hHHHHHHHHHHHhhc
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~------------~~~~vl~~l~~~l~~ 186 (303)
.+++....|.. +-.+++++|++.-.. .--++++.|.|.+-.
T Consensus 74 --------------------------~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ 126 (332)
T KOG1495|consen 74 --------------------------TPNVVASKDYS-VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVK 126 (332)
T ss_pred --------------------------CCceEecCccc-ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 14677777775 457899999988432 122344444443321
Q ss_pred cCCCCEEEEeeccCcc
Q 022050 187 RITVPVIISLAKGVEA 202 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~ 202 (303)
..++++++..+|.++.
T Consensus 127 ySpd~~llvvSNPVDi 142 (332)
T KOG1495|consen 127 YSPDCILLVVSNPVDI 142 (332)
T ss_pred cCCCeEEEEecCchHH
Confidence 1127888888887654
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=55.93 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|||+|.+|+.+|..|+.. |. ..++++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 37899999999999999999999 82 3899999986
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0065 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=32.1
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+|+|+ |.+|..++..|.++ | ++|+++.|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789998 99999999999999 8 99999999988654
|
... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.015 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.5
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
.+.+..+.++...++|+||.++|+....+..+...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35566677777778999999999987776666543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=56.59 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=60.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|+|| |..|..+...|+++ ++ +..++..+.++.+.-+.+ .+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~l------------------------~~~g~---- 49 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKEL------------------------SFKGK---- 49 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCee------------------------eeCCc----
Confidence 479999999 99999999999987 61 112456666654321110 01100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.+.......++++|+||+|+|.....++.+++.. . +..||++...+
T Consensus 50 -------------------------~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 50 -------------------------ELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred -------------------------eeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 122221111235789999999999988887776543 3 56788776543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0079 Score=58.33 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=34.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
...||+|+|+|.+|...+..+... | .+|+++++++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 457899999999999999999887 8 78999999987654
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.01 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=31.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|.|+|.|.+|..++..|.+. + .+|++++++++..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 68999999999999999987 6 699999999987654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0093 Score=57.09 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....+.|+.||.+.||..++.-++.+ | +.|..|.|...++++.-.+ + .++.
T Consensus 3 q~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~flan-------e--------------ak~~-- 53 (487)
T KOG2653|consen 3 QTPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEFLAN-------E--------------AKGT-- 53 (487)
T ss_pred CccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHHHHH-------h--------------hcCC--
Confidence 34568899999999999999999999 9 8999999999888753211 1 0110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~---a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
++.-..++++ -++....|++-||.- .++.++++|.+++.+ +-+||.
T Consensus 54 ---------------------------~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiIID 103 (487)
T KOG2653|consen 54 ---------------------------KIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIIID 103 (487)
T ss_pred ---------------------------cccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEEe
Confidence 1111233444 346788999999886 588899999999998 778886
Q ss_pred eeccCcc
Q 022050 196 LAKGVEA 202 (303)
Q Consensus 196 ~~nGi~~ 202 (303)
--|.--.
T Consensus 104 GGNs~y~ 110 (487)
T KOG2653|consen 104 GGNSEYQ 110 (487)
T ss_pred CCcccCc
Confidence 5554333
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=63.06 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCC---------CCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (303)
.++||+|||||.||...+..|++. ..+. +...|++.|++.+.++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 367999999999999999999886 3111 0013888888876554
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.018 Score=54.98 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=23.4
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+.+|.++.++ +.|+|++++|+....++..+.
T Consensus 51 ~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~a 84 (346)
T PRK11579 51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAA 84 (346)
T ss_pred ceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 35577888774 579999999998766555543
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0093 Score=58.06 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
..+..+++|||+|..+..-...++.- - ..-.+|.+|+|++++.++... .+.+ .+++.
T Consensus 152 r~da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~f~~-----~~~~-------------~~~~~-- 208 (379)
T PRK06199 152 RKDSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDSFAT-----WVAE-------------TYPQI-- 208 (379)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHHHHH-----HHHH-------------hcCCC--
Confidence 34568999999999999999888763 1 001589999999987764221 1110 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----HHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----TKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+.+..+.++++++||+|+-|+++.. ...+++ ..++++ ++.|.
T Consensus 209 --------------------------~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkp---G~hv~ 256 (379)
T PRK06199 209 --------------------------TNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK--REWVKP---GAFLL 256 (379)
T ss_pred --------------------------ceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec--HHHcCC---CcEEe
Confidence 036667889999999999999997532 122332 245666 66664
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.029 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|+|+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999998 83 5799999984
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0046 Score=59.83 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=30.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
|.|+|+|.+|..++..|++. + ++ +|++.+|+.+++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999998 4 14 89999999987654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0056 Score=60.03 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=41.5
Q ss_pred hhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..+..++.++... .+|+.|||||-||...|..|+.+ |. .+|++..|+.+++.+
T Consensus 165 Av~lA~~~~~~L~--~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 165 AVELAKRIFGSLK--DKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHHhcccc--cCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 3444556666422 37899999999999999999998 83 689999999887654
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=54.66 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCceEEEECCChHH-HHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG-~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|||+|.++ ...+..+... +.. - .-|-+++++++++++..+ .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~-~-~~vav~d~~~~~a~~~a~-------------------------~---- 49 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG-L-ELVAVVDRDPERAEAFAE-------------------------E---- 49 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc-e-EEEEEecCCHHHHHHHHH-------------------------H----
Confidence 35899999999655 4577777765 400 0 246678899876543110 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
+ ++ ...+|.++.+++ .|+|++++|+....++...- +.. ++.| -+-
T Consensus 50 -----~--------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~A---L~a---GkhV-l~E 97 (342)
T COG0673 50 -----F--------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAA---LEA---GKHV-LCE 97 (342)
T ss_pred -----c--------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHH---Hhc---CCEE-EEc
Confidence 0 11 356778887764 59999999998766655332 333 4443 356
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
|.+..+
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 665553
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.02 Score=51.59 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL~ 62 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDVVELSNLQ 62 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEEcCcccc
Confidence 36899999999999999999998 93 58999998764444443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.035 Score=50.32 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|..|+.++..|+.. |. .+++++|.+.-....++
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~sNL~ 68 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELSNLN 68 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChhhhc
Confidence 36899999999999999999998 83 57999998875554444
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0066 Score=53.26 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=34.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||| |..|+.|+.-..++ | |+|+.+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 89999999 99999999999999 8 99999999998764
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0096 Score=51.47 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.1
Q ss_pred hhhHHHHHhccCCCCCceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++-++...... .-+||.|||+|-| |..+|..|... | .+|++.+|+.
T Consensus 31 ~v~l~~~~~~~l--~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDL--AGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCC--CCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECCc
Confidence 344444444322 3489999999997 88899999988 8 6888888764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.011 Score=60.25 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-+|.|+|+|.+|..+|..|.++ | ++|+++|.|++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 5799999999999999999998 8 899999999987764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.034 Score=52.50 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (303)
++||+|||+|.+|+.+...+.+. .. .++ -++++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~-~~----velvAVvdid~es 41 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS-EH----LEPGAMVGIDPES 41 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC-CC----cEEEEEEeCChhh
Confidence 47999999999999988777754 21 454 467888753
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.035 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCcC
Confidence 37899999999999999999999 93 67999998753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.02 Score=51.68 Aligned_cols=35 Identities=31% Similarity=0.370 Sum_probs=30.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~ 82 (303)
.+||.|+|+|.+|.++|..|+.. |. . +|++++|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 37999999999999999999988 82 3 799999983
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.044 Score=49.98 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccccCcc
Confidence 36899999999999999999998 83 57999999875544444
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.048 Score=52.31 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=33.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..||.|||+|.+|+.+|..|+.. |. .+++++|.+.-....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~Ve~sN 63 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDYVEWSN 63 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCccCHHH
Confidence 47899999999999999999999 92 489999998643333
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.022 Score=57.05 Aligned_cols=38 Identities=21% Similarity=0.332 Sum_probs=33.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++++|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 369 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE 369 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 47899999999999999999998 8 78999999876554
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.027 Score=48.03 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.-++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCc
Confidence 348999999999999999999998 8 899999643
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=52.94 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|||+|-+|.+++..|++. |. .+|++++|+.++.++
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 47899999999999999999988 82 479999999876654
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.063 Score=50.33 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (303)
+||+|||+|.||..++..+.+. .. .++ -++++++++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~~----~elvaV~d~d~es 38 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-EH----LEMVAMVGIDPES 38 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-CC----cEEEEEEeCCccc
Confidence 7899999999999887777654 21 454 467888764
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=43.98 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||+|||+|..|.-+|..|+.. | .+|+++.+.+.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 689999999999999999998 8 8999999998755
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.031 Score=53.62 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~ 65 (303)
+|+||+|+|| |..|..+...|.++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 3489999999 99999999999976
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.051 Score=49.69 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-....+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 72 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDTVSLSNL 72 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCEECcchh
Confidence 47999999999999999999998 83 5899999886444433
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.038 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++|.|||+|.+|...+..|.+. | .+|++++++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~~ 43 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPEL 43 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 47999999999999999999998 8 8999998753
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.019 Score=55.14 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=42.8
Q ss_pred ccCCchhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.+.+-+..+.-+.+++.. -..++|.|+|| |.||+.++..|+...|. .++++++|++++++
T Consensus 133 ~T~~ll~~~V~la~~~lg~~-l~~k~VLVtGAtG~IGs~lar~L~~~~gv----~~lilv~R~~~rl~ 195 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGID-LSKATVAVVGATGDIGSAVCRWLDAKTGV----AELLLVARQQERLQ 195 (340)
T ss_pred hHHHHHHHHHHHhHHHhccC-cCCCEEEEEccChHHHHHHHHHHHhhCCC----CEEEEEcCCHHHHH
Confidence 34444444555555666642 23489999999 89999999999853131 48999999876554
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=53.54 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=28.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEE
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~ 78 (303)
-++|+|||. |.||..+|..|.++ | +.|++|
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 389999999 99999999999998 8 899998
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.046 Score=56.37 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAE 91 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~ 91 (303)
..||.|+|||..|+.+|..|+.. |. .+++++|.+.=....++.+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~Ve~SNL~RQ 381 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGKVSYSNPVRQ 381 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEECCCccccc
Confidence 47999999999999999999998 93 5799999876433334333
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0099 Score=57.62 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=31.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 35899999999999999999998 8 8999999975
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.081 Score=48.84 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=75.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|.|| |.||..+...+.+. . +.+ +-.++|.+....- +... .+.+.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~g----------~d~g-----------e~~g~--- 52 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSLG----------SDAG-----------ELAGL--- 52 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCccccc----------cchh-----------hhccc---
Confidence 699999999 99999999999876 3 133 3345666542110 0000 01110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+ . -.+.+++|+.....++|++|=.+-|....+.++....+ +..+|.-|-|+
T Consensus 53 -~--~--------------------~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTGf 103 (266)
T COG0289 53 -G--L--------------------LGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 103 (266)
T ss_pred -c--c--------------------cCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCCC
Confidence 0 0 13456666666778999999988887776666654432 34556677788
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e 239 (303)
+.+.. +.+.++.- .+.++..|||+--
T Consensus 104 ~~e~~---------~~l~~~a~----~v~vv~a~NfSiG 129 (266)
T COG0289 104 TEEQL---------EKLREAAE----KVPVVIAPNFSLG 129 (266)
T ss_pred CHHHH---------HHHHHHHh----hCCEEEeccchHH
Confidence 87521 23444332 1336678888653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.023 Score=58.53 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=35.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|+|.|.+|..++..|.+. | ++++++|.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 47899999999999999999988 7 899999999987764
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.044 Score=53.39 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||+|||+|..|+.++..||+. |. .+++++|.+.=
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~V 211 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDDF 211 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCEe
Confidence 6899999999999999999998 83 58999998853
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.043 Score=51.30 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
.+++.|+|+|-.|.+++..|++. | . +|++++|+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La~~-G-----~~~V~I~~R~~~ 161 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCALD-G-----AKEITIFNIKDD 161 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCch
Confidence 36899999999999999999998 8 5 5999999973
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=50.10 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..||.|+|+|.+|+.++..|+.. |. .+++++|.+.=..
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ve~ 78 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDTVDV 78 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCEEcc
Confidence 36899999999999999999998 83 5899999985333
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.13 Score=49.71 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=32.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.=..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ve~ 65 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDTVDL 65 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcc
Confidence 36899999999999999999998 83 5899999986333
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.052 Score=53.96 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=63.6
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.+++|+|||+ |.+|..+...|.+. |+ . .+|+.+.+..+.+ .
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~i-----------------------------~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGEI-----------------------------L-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCcc-----------------------------C--
Confidence 3578999999 88999999999887 71 1 2565555543211 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.+.+..++++.-...|+++++||+....++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 1223344555445689999999999999999997653 2 23456678
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88865
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.083 Score=49.55 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=43.6
Q ss_pred CchhhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 23 GSLEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+.++|...=..+++..... ..||.|||+|.+|+.++..|+.. |. ..++++|.+.=....++
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~Ve~SNLn 68 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDVFELRNFN 68 (287)
T ss_pred ccHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCCcchhccc
Confidence 34566655433444444322 36899999999999999999999 93 58999999864444444
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.019 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|||.|.|+ |.+|+.++..|.+. | ++|+..+|+.+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~~ 36 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLRK 36 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChHH
Confidence 79999997 99999999999998 8 899999998653
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.015 Score=56.35 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|+|||+|.+|.+.|..|++. | ++|++++++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 6899999999999999999998 8 8999999975
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.16 Score=48.30 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=107.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++.++.++|+|.....+|..+..+ | +..+-+++|...+-++ +.+.++.. ...++++... .
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rse~-----l~qala~~---------~ql~l~~q~e-a 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRSER-----LKQALALT---------PQLYLQGQGE-A 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchhHH-----HHHHHhcC---------CeEEEEeccH-H
Confidence 567899999999999999999887 7 3678888887654433 33333321 1122322100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH-HhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~-~l~~~~~~~iivs~~nGi 200 (303)
.+.+ +|-+ .--.+..|++++..+.+-+|+|||..+..+++++|.- .++. .+..++||-+ +
T Consensus 63 -hr~l-------eg~~--------~id~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~-vk~viLiSpt--f 123 (431)
T COG4408 63 -HRQL-------EGSV--------TIDCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ-VKSVILISPT--F 123 (431)
T ss_pred -HHhh-------cCce--------ehhHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc-ccEEEEeccc--c
Confidence 0000 0000 0011346788888899999999999999999999753 3332 1123344433 3
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEE--------------eCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhc
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYL--------------GGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~--------------~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~ 265 (303)
+.. ..+++.+.. +|.. ..|+ .-|+++-.-+-.+..+... -.+...++++..+|.
T Consensus 124 Gsn-------~lv~~~mnk-~~~d---aeViS~SsY~~dTk~id~~~p~~alTkavKkriYlgs~~~ns~~~e~l~~v~a 192 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRD---AEVISLSSYYADTKYIDAEQPNRALTKAVKKRIYLGSQHGNSGSAEMLTAVLA 192 (431)
T ss_pred ccc-------HHHHHHHhh-hCCC---ceEEEeehhcccceeecccCcchHHHHHHhHheeeccCCCCChHHHHHHHHHH
Confidence 332 223333332 2221 2222 2344443322211111111 135568899999999
Q ss_pred CCCeEEEecCChhHHH
Q 022050 266 RPHFTVWDNGDLVTHE 281 (303)
Q Consensus 266 ~~g~~~~~~~Di~g~e 281 (303)
..|+.+..-+.+..+|
T Consensus 193 q~~I~v~~~esp~~AE 208 (431)
T COG4408 193 QHGIDVEPCESPLAAE 208 (431)
T ss_pred hcCCceEEcCChhhhh
Confidence 9999999888887766
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=49.46 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||+|+|+|..|+.++..|+.. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 46899999999999999999998 83 4799999985
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.1 Score=48.76 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=51.6
Q ss_pred cCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 38 ~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.....+.||++||+|.+-...-...... | .+..|.-+|++++..+..+ + ++++ ..++
T Consensus 116 ~~~~~p~rVaFIGSGPLPlT~i~la~~~-~---~~~~v~~iD~d~~A~~~a~--~---lv~~--------------~~~L 172 (276)
T PF03059_consen 116 HAGDPPSRVAFIGSGPLPLTSIVLAKQH-G---PGARVHNIDIDPEANELAR--R---LVAS--------------DLGL 172 (276)
T ss_dssp --TT---EEEEE---SS-HHHHHHH--H-T---T--EEEEEESSHHHHHHHH--H---HHH-----------------HH
T ss_pred cCCcccceEEEEcCCCcchHHHHHHHHh-C---CCCeEEEEeCCHHHHHHHH--H---HHhh--------------cccc
Confidence 3333467999999999988754444333 3 0146788999998654311 1 1110 0111
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEe-cCH---HHHhcCCCEEEEecCch----hHHHHHHHHHHHhhccCC
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNL---QEAVWDADIVINGLPST----ETKEVFEEISRYWKERIT 189 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~---~~a~~~aDlVIiaVp~~----~~~~vl~~l~~~l~~~~~ 189 (303)
+ ..+++. .|. ...+.++|+|++|---. .+.+++++|.+++++
T Consensus 173 ----~-----------------------~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~--- 222 (276)
T PF03059_consen 173 ----S-----------------------KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP--- 222 (276)
T ss_dssp ----------------------------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---
T ss_pred ----c-----------------------CCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---
Confidence 0 023322 222 22356889999998665 799999999999998
Q ss_pred CCEEEE-eeccC
Q 022050 190 VPVIIS-LAKGV 200 (303)
Q Consensus 190 ~~iivs-~~nGi 200 (303)
++.|+. ..+|+
T Consensus 223 ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 223 GARLVVRSAHGL 234 (276)
T ss_dssp TSEEEEEE--GG
T ss_pred CcEEEEecchhh
Confidence 675543 44443
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.045 Score=54.00 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred CceEEEECCChHHHHH--HHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVF--TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~ai--A~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.+||+|||+|+.+..- ...+.+. -.|.. .++.|+|.++++++.+. .+.++ +.+..
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~~-~el~L~Did~~r~~~i~------~~~~~------------~v~~~--- 59 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLART-EELPV-RELALYDIDEERLKIIA------ILAKK------------LVEEA--- 59 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcC-ccCCc-ceEEEEeCCHHHHHHHH------HHHHH------------HHHhh---
Confidence 4799999999877653 2223332 22332 58999999998765321 11110 11111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~ 170 (303)
.. ...+..++|.++|+++||+|+.++-.
T Consensus 60 ----g~------------------~~kv~~ttd~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 60 ----GA------------------PVKVEATTDRREALEGADFVITQIRV 87 (442)
T ss_pred ----CC------------------CeEEEEecCHHHHhcCCCEEEEEEee
Confidence 00 02578899999999999999998844
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.028 Score=53.95 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhh
Q 022050 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (303)
Q Consensus 54 mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 133 (303)
||..||..+..+ | ..+++.+.+...+++.+ +.+...+++.. ..+ .+.+. +.
T Consensus 1 MG~gia~~~~~~-~-----i~~vl~~~n~~~~~~~~-~~v~a~l~~~~----~~~----~~~~~-------~~------- 51 (380)
T KOG1683|consen 1 MGAGIAIVFILA-G-----IRTVLVDANVALLARGI-LQLAAHLNSEV----KRG----RLSGL-------ER------- 51 (380)
T ss_pred CcchHHHHHHHc-C-----CcEEEEeccHHHHHHhH-HHHHHhhhHHH----hhc----ccccc-------ch-------
Confidence 788999999999 8 89999999987665432 22323333221 000 01100 00
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccC
Q 022050 134 DGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRII 211 (303)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~ 211 (303)
+.....+.-+.|..+ +.++|+++.+|-+. .+.+++.+|...+++ ++++-++++.+..... .....
T Consensus 52 --------~~~~~~L~~~~Dy~~-~~~~dmvieav~edl~Lk~~l~~~le~v~~~---~~i~gsntSs~~~~~i-sa~ld 118 (380)
T KOG1683|consen 52 --------EKTKSNLVETLDYTG-FANADMVIEAVFEDLELKHELFKSLEKVEPP---KCIRGSNTSSLDINVI-SAGLD 118 (380)
T ss_pred --------hhhhhhccccccccc-ccccceeccchhhhHHHHHHHHHHHHhhcCC---cceeeeccccCChHHH-hhccC
Confidence 111124555566554 78999998888775 588999999999998 7888888888776532 12345
Q ss_pred CHHHHHHhHhCCC
Q 022050 212 TPTQMINRATGVP 224 (303)
Q Consensus 212 ~~~~~i~~~l~~~ 224 (303)
+++.++..|+-.|
T Consensus 119 ~~e~vvg~h~fsp 131 (380)
T KOG1683|consen 119 RPEMVVGMHFFSP 131 (380)
T ss_pred chhhhccccccCH
Confidence 5666666555433
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.14 Score=49.43 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=29.9
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.+.|++|+|+|...-.++..++.. . ++.||++++-+-.
T Consensus 65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~fR~ 104 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEYRM 104 (347)
T ss_pred HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhhcC
Confidence 35789999999999977777776532 3 6788888866543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.14 Score=46.68 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=32.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.++..|+.. |. .+++++|.+.=....++
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~Ve~sNLn 40 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDTIDVSNLN 40 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCEEcchhhc
Confidence 689999999999999999998 83 57999999864444333
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.066 Score=47.61 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|+ |.+|..++..|.+. + ++|++..|++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789998 99999999999998 7 99999999984
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=46.72 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+++.|+|+|-.+.+++..|+.. |. .+|++++|+++
T Consensus 124 ~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 124 GKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 36899999999999999999987 72 58999999965
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=48.66 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=46.5
Q ss_pred CcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+|-++=.|-.-.-=+..|++.-......-++++|+|||-.+.+++..|++. |. .+|+++.|+.++.++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 565555554443333444432211122348899999999999999999998 82 579999999987654
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.14 Score=49.23 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=29.9
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+++.++|+||+|+|.....++..++.. . ++.||.++.-+-
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~fR 104 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAFR 104 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchhh
Confidence 346789999999999977777776432 3 678888886553
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.061 Score=50.44 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.9
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|+|||.|. +|..+|..|... | ..|+++.+.
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 38999999988 999999999988 7 789888764
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=53.39 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=35.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..+|.|+|+|.+|..++..|.++ | ++++++|.|+++++.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~~ 439 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIETL 439 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHHH
Confidence 47899999999999999999998 8 8999999999887653
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.19 Score=47.65 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=33.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|+|+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~sNLn 40 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLSNLN 40 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchhhcC
Confidence 689999999999999999999 93 58999998875444443
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.093 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=28.7
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
...++|++|+|+|...-.++.+++.. . ++.||.++.-+-
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadfR 85 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAHR 85 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhhh
Confidence 34679999999999977777776543 3 677888775543
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.099 Score=41.78 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=32.0
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..++++++.+. +.|+||.|..+....+.+.+ .+.. +..||+..||...
T Consensus 46 ~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~---~L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 46 AFTTDLEELIDDPDIDVVVECTSSEAVAEYYEK---ALER---GKHVVTANKGALA 95 (117)
T ss_dssp CEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHH---HHHT---TCEEEES-HHHHH
T ss_pred cccCCHHHHhcCcCCCEEEECCCchHHHHHHHH---HHHC---CCeEEEECHHHhh
Confidence 35678887777 89999999888776655544 4454 6788888887544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.1 Score=49.97 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++||+|+|+ |.-|.-+...|+.+ . ..++.++..++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 689999999 99999999999987 3 25665555443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.095 Score=41.24 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|.|||+|.+|..=+..|.+. | .+|++++++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 347899999999999999999998 8 8999999985
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.074 Score=55.92 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=40.4
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
++|.+.-+.+++..+.. ..||+|+|+| +|+.+|..|+.. |.+ ..++++|.+.=...++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ve~sNLn 148 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDTLELSNLN 148 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCEEcccccc
Confidence 35555444555554433 4789999999 999999999998 811 37899998764333333
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=48.53 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+.+||+|+|| |..|.-+...|+++ . + +..++.++..+.. ..+ ...+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG~-----------------------~~~~~~~--- 52 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AGE-----------------------TLRFGGK--- 52 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CCc-----------------------eEEECCc---
Confidence 4589999999 99999999999984 2 1 1156666644422 110 0011110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~-a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.+. +.++ ...++|++|+|+|...-.++.+++.. . ++.||.++.-
T Consensus 53 --------------------------~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 53 --------------------------SVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred --------------------------ceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 13332 2222 23689999999999977777766533 3 6788888866
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+-.
T Consensus 100 fRl 102 (336)
T PRK08040 100 FAL 102 (336)
T ss_pred hcC
Confidence 543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.084 Score=49.97 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++..+-||+|||.|..|+--|+....- | .+|++.|++.+++.
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl~ 205 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRLR 205 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHHh
Confidence 334467999999999999977666554 6 79999999987654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.029 Score=53.47 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=32.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|.|||+|.-|.+.|..|++. | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999999 9 89999998875
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.1 Score=50.09 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=28.5
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|++|+|+|.....++.+++. .. +..||++...+
T Consensus 58 ~~~~~D~v~~a~g~~~s~~~a~~~~---~~---G~~VID~ss~~ 95 (339)
T TIGR01296 58 SFEGIDIALFSAGGSVSKEFAPKAA---KC---GAIVIDNTSAF 95 (339)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHH---HC---CCEEEECCHHH
Confidence 4578999999999998887777653 33 66788777544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.2
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
++||+|+|+|.||..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.2 Score=48.93 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|||+|.+|+.+|..|+.. |. ..++++|.+.-....++
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ve~sNL~ 79 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDVVDSSNLQ 79 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEecccccC
Confidence 47899999999999999999999 93 57999998864444443
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.041 Score=52.48 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 32 ~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|.+..++ ..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 8 ~~~~~~~~~-~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 8 FMCKEKPPP-TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred hhcccCCCC-CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 668877766 458999999999999999999998 8 89999998764
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.13 Score=49.19 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=23.3
Q ss_pred EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 149 ~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+.+|.++.++ +.|+|++++|+....++..+.
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~a 84 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRA 84 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHH
Confidence 35577888774 579999999998765555443
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.22 Score=48.67 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||.|||+|.+|+.+|..|+.. |. ..++++|.+.-....+
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~ve~sNL 82 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDVVDESNL 82 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecCccc
Confidence 46899999999999999999998 83 5799999886444333
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.23 Score=47.60 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=27.1
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
...++|+||+++|+....++.+++.. . ++.+|.++.-+
T Consensus 70 ~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg~f 107 (341)
T TIGR00978 70 ASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNASNH 107 (341)
T ss_pred HhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECChhh
Confidence 45789999999999987777765433 2 56677666443
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.072 Score=49.91 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.1
Q ss_pred CceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
-++++|||.|.+ |..+|..|... | ..|+++..
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVt~~hs 190 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTICHS 190 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEecC
Confidence 379999999888 99999999887 7 78887643
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.039 Score=53.14 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|++|+|+|+|..|.+.|..|++. | ++|+++++.++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCCC
Confidence 57899999999999999999998 8 899999998753
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.048 Score=50.56 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=30.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.+|+|||+|.-|.++|..|+++ | ++|+++++.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 9 999999998764
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.31 Score=45.70 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||.|+|+|.+|+-+|..|+.. |. ..++++|.+.-....++
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~ve~snL~ 60 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPCSWSDLS 60 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCccchhhcc
Confidence 36899999999999999999999 93 58999998864444433
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.054 Score=52.16 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 48999999999999999999999 8 89999999864
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.29 Score=47.00 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=28.5
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++||+|+| .|.+|..+...|... . ..+++.+.+++.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~~~ 40 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASERS 40 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcChhh
Confidence 47999998 599999999999876 4 1477777555543
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.23 Score=47.55 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.3
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
.+||+|+|+|.||..++..|.+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 37999999999999999998754
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.056 Score=51.95 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47899999999999999999998 8 89999999875
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.051 Score=52.29 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|||+|..|.+.|..|++. | ++|+++++.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 6899999999999999999999 9 89999998765
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.19 Score=50.90 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..|++|+|+|.+|...+..+... | ..|+++++++++++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle~ 202 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999988887776 8 679999999876553
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.06 Score=51.83 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...+|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 446899999999999999999999 8 8999999975
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.2 Score=48.62 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=29.3
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nGi~~ 202 (303)
...++|++|+|.|.....++..++.. . + ++||++++-+-.
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~fR~ 103 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTLRM 103 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHHhC
Confidence 35789999999999977777776543 2 5 568888766543
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.16 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
..++++|+|+|.+|..++..+.+. + ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 347999999999999999999987 5 168999998
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.34 Score=46.66 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=28.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (303)
..||+|||+ .||...+..+... . ++.+ |-++++++++.++
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~-~---~~~eLvaV~d~~~erA~~ 43 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAA-P---ERFELAGILAQGSERSRA 43 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhC-C---CCcEEEEEEcCCHHHHHH
Confidence 479999999 6899888888765 2 0134 4568888876543
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.068 Score=49.62 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|+|||+|-.|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999999 9 899999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.11 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++|.|||.|.+|.++|..|.+. | ++|+++|++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~~ 38 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLEA 38 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence 6899999999999999999998 8 889999987654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.067 Score=51.74 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 47899999999999999999999 9 99999998764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.26 Score=47.32 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.+|+|+|+|-+|..-.+ +|++.| .+|+.+++++++.+.
T Consensus 167 G~~V~I~G~GGlGh~avQ-~Aka~g-----a~Via~~~~~~K~e~ 205 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQ-YAKAMG-----AEVIAITRSEEKLEL 205 (339)
T ss_pred CCEEEEECCcHHHHHHHH-HHHHcC-----CeEEEEeCChHHHHH
Confidence 379999999988876444 455337 799999999987653
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.5 Score=44.42 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 41 ~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....||.|.|. |.+|..+...|.+. | ++ .+|-.++.. .+. .
T Consensus 6 ~~~~~~~v~~~~~~~g~~~l~~l~~~-g-----~~-~v~pVnp~~~~~~--------------------------v---- 48 (291)
T PRK05678 6 NKDTKVIVQGITGKQGTFHTEQMLAY-G-----TN-IVGGVTPGKGGTT--------------------------V---- 48 (291)
T ss_pred cCCCeEEEeCCCchHHHHHHHHHHHC-C-----CC-EEEEECCCCCCCe--------------------------E----
Confidence 34579999999 88999999999876 7 55 444444321 000 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+++..+.+++-+. .|+.+++||...+.+++++.... . -..++.+
T Consensus 49 ---------------------------~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~ 96 (291)
T PRK05678 49 ---------------------------LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCI 96 (291)
T ss_pred ---------------------------eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEE
Confidence 124444566665554 79999999999999999886652 1 2345667
Q ss_pred eccCcc
Q 022050 197 AKGVEA 202 (303)
Q Consensus 197 ~nGi~~ 202 (303)
+.|+..
T Consensus 97 s~Gf~~ 102 (291)
T PRK05678 97 TEGIPV 102 (291)
T ss_pred CCCCCH
Confidence 788764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.061 Score=52.30 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|||+|--|.++|..|++. | ++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 7899999999999999999999 8 89999999874
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.07 Score=50.79 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=32.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++|+|||+|.-|.+.|..|++. | ++|++++++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 57899999999999999999998 8 89999998764
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.076 Score=49.35 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=45.5
Q ss_pred hhhhhHHHHHhccCCC---CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+|.+...++++.... ...+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-....+|
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~~sNln 71 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVCVTNTN 71 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEecccccc
Confidence 4577777777775542 247899999999999999999999 83 58999998865444444
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.058 Score=51.75 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 8 89999999764
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.4 Score=42.62 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
-+||.|||+|.+|..-+..|.+. | .+|++++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCCC
Confidence 36999999999999999999998 8 89999998653
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.62 Score=43.92 Aligned_cols=100 Identities=12% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+.+|+.||+|..|..-...++.. . . +..++.+|.+++.++..++ .+.. ..++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~--p-~~~~~giD~d~~ai~~Ar~-----~~~~--------------~~gL---- 175 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L--P-TTSFHNFDIDPSANDVARR-----LVSS--------------DPDL---- 175 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C--C-CCEEEEEeCCHHHHHHHHH-----Hhhh--------------ccCc----
Confidence 568999999999887644444333 1 1 1469999999987654221 0100 0111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEe-cCHHH---HhcCCCEEEEec----CchhHHHHHHHHHHHhhccCCCCEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNLQE---AVWDADIVINGL----PSTETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~~~---a~~~aDlVIiaV----p~~~~~~vl~~l~~~l~~~~~~~ii 193 (303)
. .++++. .|..+ ...+.|+|++.+ -.....++++.+.+++++ +..+
T Consensus 176 ~-----------------------~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkP---GG~L 229 (296)
T PLN03075 176 S-----------------------KRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAP---GALL 229 (296)
T ss_pred c-----------------------CCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCC---CcEE
Confidence 0 123322 22222 135799999995 124678899999999998 5655
Q ss_pred E
Q 022050 194 I 194 (303)
Q Consensus 194 v 194 (303)
+
T Consensus 230 v 230 (296)
T PLN03075 230 M 230 (296)
T ss_pred E
Confidence 4
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.08 Score=50.41 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+++|+|||+|-+|.+.|..|++. | .+|+++++++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 357899999999999999999999 8 8999999876
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.072 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 3599999999999999999999 8 8999999875
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.26 Score=46.76 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+..+++|++|+|+|.....++.+.+. .. ++.||.++.-+
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~---~~---g~~VIDlSadf 83 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVD---NP---NTCIIDASTAY 83 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHH---hC---CCEEEECChHH
Confidence 44578999999999987777776653 23 57788777554
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.22 Score=47.54 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=27.7
Q ss_pred cCCCEEEEecCchh-HHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 159 WDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 159 ~~aDlVIiaVp~~~-~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++|++|.++|+.. -......+.+.+.. +..||+..||...
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~---G~hVVTaNKgalA 121 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEH---GIDVVTANKSGLA 121 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHC---CCEEEcCCHHHHH
Confidence 46899999998532 12235555666776 7788888887543
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=37.80 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=27.1
Q ss_pred EECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 48 VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999999 8 89999999874
|
... |
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.12 Score=53.71 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=39.2
Q ss_pred chhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+..|.+.+..+.+........|+|||+|..|.++|..|+.. | .+|.+++++.
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~d 104 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERED 104 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeccc
Confidence 345565555554322222346899999999999999999999 9 8999999863
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.21 Score=47.56 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..|+|+|-|| |.+|+.|...|.++ | |.|....|+++.-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~~ 43 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPEDE 43 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcchh
Confidence 4589999999 99999999999999 9 8999999999763
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.2 Score=47.07 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=32.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
||.|||+|.+|+.++..|+.. |. .+++++|.+.-....++
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~Ve~SNLn 40 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTIDVSNLN 40 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEecccccC
Confidence 689999999999999999998 93 57999998764444444
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=47.90 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.++++.|-|| +-+|..+|..||++ | ++|+|+.|++++++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~la 47 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEALA 47 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHHH
Confidence 3468999999 99999999999999 9 99999999999887654
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.25 Score=46.35 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||-|. +|..+|..|... | ..|+++.+.
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs~ 192 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHRF 192 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEECC
Confidence 37999999988 999999999887 6 788887653
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.27 Score=42.18 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=49.8
Q ss_pred HHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhccc
Q 022050 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAY 113 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 113 (303)
..+......-++|++.|||+=|.++...+--. . +.=..++|.++.+. +.+
T Consensus 59 ~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K~-------------------------G~~ 108 (160)
T PF08484_consen 59 EFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLKQ-------------------------GKY 108 (160)
T ss_dssp HHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGGT-------------------------TEE
T ss_pred HHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhhc-------------------------Ccc
Confidence 44433334458899999999999998887543 2 02245788887532 135
Q ss_pred chhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCE
Q 022050 114 LKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 114 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~i 192 (303)
.++. ++.+.+ +++.. ...|+||+ .+..+.+++.+++..+... +..
T Consensus 109 ~PGt-----------------------------~ipI~~-p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~---gg~ 154 (160)
T PF08484_consen 109 LPGT-----------------------------HIPIVS-PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER---GGK 154 (160)
T ss_dssp -TTT-------------------------------EEEE-GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT---T-E
T ss_pred cCCC-----------------------------CCeECC-HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc---CCE
Confidence 5542 233322 23322 34798777 6788899999999988776 444
Q ss_pred EE
Q 022050 193 II 194 (303)
Q Consensus 193 iv 194 (303)
+|
T Consensus 155 fi 156 (160)
T PF08484_consen 155 FI 156 (160)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.094 Score=49.95 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|+|||+|.+|.+.|..|+++ | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999999 8 8999999853
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.57 Score=45.94 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=29.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
...+.|+|.|.+|..++..|.+. | .+|++++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 35799999999999999999887 7 789888866
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.095 Score=50.94 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
|||+|||+|--|.+.|..|++. | + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999998 7 5 8999999865
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.67 Score=42.96 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=61.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+++||.|||+|--|. ++-+.+. . .+|++++.|++.++..+ .+++.+.+.+
T Consensus 72 ~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~~ 121 (262)
T PRK00536 72 ELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEVK 121 (262)
T ss_pred CCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHhh
Confidence 468999999998554 4556555 3 58999999998765322 1344332111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.| ++++......+.- +..|+||+=.. .-++.++.+.+.|++ +.++ ++++|
T Consensus 122 ~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~--~~~~fy~~~~~~L~~---~Gi~-v~Qs~ 172 (262)
T PRK00536 122 NN----------------------KNFTHAKQLLDLDIKKYDLIICLQE--PDIHKIDGLKRMLKE---DGVF-ISVAK 172 (262)
T ss_pred cC----------------------CCEEEeehhhhccCCcCCEEEEcCC--CChHHHHHHHHhcCC---CcEE-EECCC
Confidence 11 2444443343322 56899998732 225677788888888 5654 45655
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.22 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=29.2
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|+|+|. .|.++|..|... | ..|+++.+.
T Consensus 159 Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~~ 192 (283)
T PRK14192 159 GKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHSR 192 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeCC
Confidence 37999999998 999999999988 7 789988873
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.11 Score=50.13 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 36799999999999999999998 8 89999998753
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.54 Score=45.09 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++|+|+|.+|...+..+... |. ..|++.|+++++++.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga----~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GA----SVVIVVDRSPERLEL 208 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CC----ceEEEeCCCHHHHHH
Confidence 899999999999976666555 72 578899999987764
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.2 Score=41.77 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..||+|.|- |.+|..+-..+... | .+ .+|..++..-. ..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~-g-----~~-~v~~V~p~~~~----------------------------~~v---- 46 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAY-G-----TN-IVGGVTPGKGG----------------------------TTV---- 46 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhC-C-----CC-EEEEECCCCCc----------------------------cee----
Confidence 478999998 99999999898776 7 66 56666653100 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
..+++..+.+++.+. .|+.+++||+..+.+++++.... . -..++.++.|
T Consensus 47 ------------------------~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~-G----vk~avIis~G 97 (286)
T TIGR01019 47 ------------------------LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA-G----IELIVCITEG 97 (286)
T ss_pred ------------------------cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECCC
Confidence 134444566665444 69999999999999999887652 1 1345667888
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+..
T Consensus 98 f~e 100 (286)
T TIGR01019 98 IPV 100 (286)
T ss_pred CCH
Confidence 754
|
ATP citrate lyases appear to form an outgroup. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.11 Score=50.28 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.+.|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46899999999999999999999 9 999999998
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.14 Score=46.94 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCC----C--CCCeeEEEEecCCchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----L--RDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~----~--~~~~~V~l~~r~~~~~~~~~ 89 (303)
+..||.|||+|..|+.++..||+. |. + ..+.+++++|.+.=....++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn 62 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDTVSEANVG 62 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCEEccchhh
Confidence 458999999999999999999986 41 0 00127899998764333333
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.11 Score=54.08 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||+|.+|.++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 9 8999999874
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.12 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||+|||+|.-|.+.|..|++. | ++|+++++.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999998 9 89999998875
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.13 Score=49.77 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 6799999999999999999999 9 89999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.49 Score=47.88 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=33.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...||+|+|+|.+|..-+..+... | .+|+.+|+++++++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-G-----A~V~a~D~~~~rle~ 203 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-G-----AIVRAFDTRPEVAEQ 203 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 357999999999999877777666 8 789999999987654
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.15 Score=45.91 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.+|||.|+|+ |.+|..++..|+.+ | ++|+++.|++++.
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 54 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDKA 54 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHHH
Confidence 3689999996 99999999999998 8 8999999987643
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.12 Score=49.68 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.+|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence 46799999999999999999999 8 8999999863
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.17 Score=48.05 Aligned_cols=47 Identities=21% Similarity=0.061 Sum_probs=38.3
Q ss_pred hhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...++|..+.+.. |||.|.|+ |.+|+.++..|.++ | ++|+.++|...
T Consensus 3 ~~~~~~~~~~~~~---~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~~ 50 (348)
T PRK15181 3 AYEELRTKLVLAP---KRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFST 50 (348)
T ss_pred hhhhhhhcccccC---CEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 3456666665544 89999997 99999999999998 8 89999998654
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.6 Score=45.31 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=29.6
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeeccCcc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVEA 202 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nGi~~ 202 (303)
...+.|++|.|.++...+++..+++. . + +++|++++-+-.
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~---a---G~~~~VIDnSSa~Rm 102 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSLRM 102 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHh---C---CCCeEEEECChhhhc
Confidence 46789999999999877777666543 2 5 678888876544
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.14 Score=48.70 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 489999999999999999998 8 8999999864
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.14 Score=48.70 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 89999999999999999999 9 89999999875
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.78 E-value=0.21 Score=51.27 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..+|.|||+|..|.++|..|++. | ++|.+++|++
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 36899999999999999999999 9 8999999976
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.15 Score=48.96 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=32.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.++|+|||+|.-|.+.|..|+++ | ++|+++++.++.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCcc
Confidence 46899999999999999999999 9 899999988753
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.15 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+++|.|||+|..|+..|..|++. | .+|+++++.+
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccC
Confidence 46899999999999999999999 9 8999999644
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.14 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999998 9 89999999875
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.15 Score=49.60 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999999 9 89999998754
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.38 Score=48.96 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=33.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|.+|.+++..|++. | .+|++++|+.++.+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~~ 417 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAKE 417 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 36899999999999999999998 8 789999998765543
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.42 Score=44.72 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=34.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|-.|.+++..|++. |. .+|++++|+.++.++
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 47899999999999999999987 72 579999999877654
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.51 Score=45.20 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.0
Q ss_pred CceEEEECCChHHHHHHHHHHH
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD 64 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~ 64 (303)
.+||+|+|.|++|+.++..|.+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHH
Confidence 3799999999999999999877
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.14 Score=49.47 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHH-hcCCCCCCe-eEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQD-SYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~-~~G~~~~~~-~V~l~~r~~ 82 (303)
.|+|||+|.+|+++|..|++ . | . +|++++++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~-g-----~~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEH-G-----ITNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhc-C-----CCeEEEEEccc
Confidence 69999999999999999998 4 5 4 899999863
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.16 Score=48.89 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|.|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4799999999999999999999 9 8999999764
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.19 Score=44.55 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
||+.|.|+ |.+|.+++..|++. | ++|++.+|++++++.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~~ 39 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLEV 39 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 58999998 89999999999998 8 899999998776543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.3 Score=46.95 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=44.1
Q ss_pred CCchhhhhhHHHHHhccC-------------------------CCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeE
Q 022050 22 NGSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI 75 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V 75 (303)
+-+++.-++|||+..... ....++|.|.|+ |.+|+.++..|++. | ++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V 80 (367)
T PLN02686 7 TESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSV 80 (367)
T ss_pred cHhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEE
Confidence 347788888888732211 123478999998 99999999999999 8 899
Q ss_pred EEEecCCchh
Q 022050 76 RIWRRPGRSV 85 (303)
Q Consensus 76 ~l~~r~~~~~ 85 (303)
+++.|+.+..
T Consensus 81 ~~~~r~~~~~ 90 (367)
T PLN02686 81 RIAVDTQEDK 90 (367)
T ss_pred EEEeCCHHHH
Confidence 9888876544
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.2 Score=50.46 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccCCCCCceEEEECCChHHHHHHHHHHH--hcCCCCCCeeEEEEecCCc
Q 022050 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 37 ~~~~~~~~kI~VIGaG~mG~aiA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (303)
++.....+||+|||+|.-|.+-|..|++ . | ++|++|++.+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 3444456899999999999999999987 5 6 89999999874
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.16 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...|.|||+|..|.++|..|++. | ++|+++++.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 36899999999999999999998 8 8999999875
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.18 Score=51.32 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+||+|||||.-|.+-++.|.+. | .+++++.++++-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCCC
Confidence 7999999999999999999998 9 899999998753
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.61 Score=48.90 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.3
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
++|.+.-..+++..+.. ..||+|+|+|.+|+.++..|+.. |. .+++++|.+.-...++|
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ve~sNLN 84 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQFEPVNVN 84 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCEecccccc
Confidence 34444433444433322 47899999999999999999999 93 57899998764444444
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.1 Score=37.47 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=24.6
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
++++++++||+|+.++....+ ++ ..++++ +++++.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vid 98 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVIN 98 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEE
Confidence 455678899999999977632 22 345677 788774
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.18 Score=50.40 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||||.-|.+.|..|.+. | ++|+++.++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999998 8 89999998764
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.37 Score=48.14 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||.|+|+|..|.++|..|.+. | .+|+++|++..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~-G-----~~V~~~D~~~~ 49 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSEL-G-----CDVVVADDNET 49 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCChH
Confidence 347899999999999999999998 8 89999997653
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.23 Score=44.79 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|++.|.|+ |.+|.++|..|++. | +.|.+.+|+++.+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~~ 39 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLEK 39 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 68999998 88999999999999 9 889999999876543
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.22 Score=49.49 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+.|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347899999999999999999999 9 89999998754
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.24 Score=44.32 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 38 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERLQ 38 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 68999997 99999999999998 8 89999999987554
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.25 Score=43.92 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=33.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||+|.|.|+ |.+|..++..|+++ | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 478999996 99999999999998 8 89999999987554
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.25 Score=44.34 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=33.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+++.|.|+ |.+|..++..|++. | .+|.+++|+++.++.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLAA 40 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHH
Confidence 467999997 99999999999999 8 899999999876544
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.2 Score=48.41 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|.-|.++|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 6799999999999999999999 9 89999999874
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.7 Score=43.33 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCC--CeeEEEEecC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~--~~~V~l~~r~ 81 (303)
+.+|+|-|| |.+|.++...+|.. ..|-+ ...+.|+|.+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi~ 163 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDSP 163 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcCC
Confidence 578999999 99999999999974 33321 1356677873
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.63 Score=42.09 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=37.5
Q ss_pred eccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEec
Q 022050 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRR 80 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r 80 (303)
..|.+....-++.+-+-+. ..-..+||+|.|.|++|..+|..|.+. | ..|+ +.|.
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~-~~l~~~~v~I~G~G~VG~~~a~~L~~~-g-----~~vv~v~D~ 63 (227)
T cd01076 8 EATGRGVAYATREALKKLG-IGLAGARVAIQGFGNVGSHAARFLHEA-G-----AKVVAVSDS 63 (227)
T ss_pred ccchHHHHHHHHHHHHhcC-CCccCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECC
Confidence 3455555444454443333 222458999999999999999999998 8 6776 5555
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.21 Score=45.36 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.++..|++. |. .+++++|.+.-....+|
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~V~~sNln 52 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDVVCVSNLN 52 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCEECchhhc
Confidence 36899999999999999999999 93 58999998864444443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.25 Score=50.01 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|.|||+|..|.+.|..|++. | ++|.+++++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 46899999999999999999999 9 89999999753
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.77 Score=43.92 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.0
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 158 ~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+++|++|.|.+...-+++.+++.. . +.++|++++-+-.
T Consensus 64 ~~~~Divf~~ag~~~s~~~~p~~~~---~---G~~VIdnsSa~Rm 102 (334)
T COG0136 64 FSDVDIVFFAAGGSVSKEVEPKAAE---A---GCVVIDNSSAFRM 102 (334)
T ss_pred cccCCEEEEeCchHHHHHHHHHHHH---c---CCEEEeCCccccc
Confidence 4589999999998887777777654 2 7888888866544
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.25 Score=44.07 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=32.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.+++..|++. | ++|++++|++++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~~ 40 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDVA 40 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHhH
Confidence 47999999 99999999999998 8 89999999887654
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.53 Score=50.96 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.++..|+.. |. ..++++|.+.-....+|
T Consensus 332 ~srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~Ve~SNLN 373 (989)
T PRK14852 332 RSRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAYSPVNLN 373 (989)
T ss_pred cCcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEecccccc
Confidence 47899999999999999999998 83 57899988864444444
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.18 Score=48.82 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 3699999999999999999998 9 8999999876
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.27 Score=49.52 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHhccCCCCCceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc
Q 022050 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~ 83 (303)
|-++... ..+||+|||+|.-|.+-|..|+ +. | ++|++|++.+.
T Consensus 31 ~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~-g-----~~VtlfEk~p~ 74 (506)
T PTZ00188 31 CFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHE-R-----VKVDIFEKLPN 74 (506)
T ss_pred ccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 5555554 4589999999999999999765 55 7 89999999764
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.66 Score=43.53 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=27.5
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
-++++|||.|. +|..+|..|... | ..|+++..
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVtv~hs 196 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCHV 196 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEec
Confidence 38999999988 999999999887 6 78888774
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.23 Score=47.53 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|.-|.+.|..|++. | .+|+++++++.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 5799999999999999999998 8 89999998875
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.33 Score=42.76 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=33.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQDT 39 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcchH
Confidence 367899995 99999999999998 8 89999999987654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.39 Score=42.98 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.|.|+ |.+|.+++..|++. | +.|++++|+++.++.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLEA 50 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH
Confidence 3478999998 89999999999998 8 899999999866543
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.27 Score=43.73 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|.|.|+ |.+|..++..|++. | ++|.+++|+++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 579999998 99999999999998 8 89999999864
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.41 Score=42.81 Aligned_cols=37 Identities=14% Similarity=0.354 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|+++ | ++|++.+|+++..+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~~ 49 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAALA 49 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 79999998 99999999999998 8 89999999876544
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.21 Score=48.35 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 9 899999985
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.28 Score=47.37 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhc-CCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~-G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|.++|..|++.. | .+|+++++.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g-----~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG-----ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC-----CeEEEEeCCC
Confidence 47999999999999999999751 4 7999999875
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.28 Score=49.93 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.+|.++|..|++. | .+|.+++++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5699999999999999999999 9 8999999864
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.22 Score=49.32 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|||+|..|+..|..||+. | .+|+++++.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 9 89999987654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.85 Score=40.98 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~ 82 (303)
..+||+|.|.|++|+.+|..|.+. | . -|.+.|.+.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G-----~~vV~vsD~~g 57 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-G-----GKVLAVSDPDG 57 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C-----CEEEEEEcCCC
Confidence 348999999999999999999998 8 4 566677776
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.23 Score=47.58 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|.|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4699999999999999999999 9 89999999764
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=91.52 E-value=2 Score=40.11 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=42.0
Q ss_pred ecCHHHHhcC-CC-EEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccE
Q 022050 151 VTNLQEAVWD-AD-IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228 (303)
Q Consensus 151 t~d~~~a~~~-aD-lVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 228 (303)
..++.+.+.. +| ++|=.+.|..+.+.++... .. +..+|.-|.|+..+. .. .+.+.- .+
T Consensus 58 ~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~---~~---gv~~ViGTTG~~~~~--------~~-~l~~~~-----~i 117 (275)
T TIGR02130 58 EARIGEVFAKYPELICIDYTHPSAVNDNAAFYG---KH---GIPFVMGTTGGDREA--------LA-KLVADA-----KH 117 (275)
T ss_pred cccHHHHHhhcCCEEEEECCChHHHHHHHHHHH---HC---CCCEEEcCCCCCHHH--------HH-HHHHhc-----CC
Confidence 4677776665 89 8787877776666554433 32 566777887887642 11 122221 13
Q ss_pred EEEeCCCcHHH
Q 022050 229 LYLGGPNIASE 239 (303)
Q Consensus 229 ~v~~GP~~a~e 239 (303)
.++..|||..-
T Consensus 118 ~~l~apNfSiG 128 (275)
T TIGR02130 118 PAVIAPNMAKQ 128 (275)
T ss_pred CEEEECcccHH
Confidence 46788998653
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.34 Score=42.91 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|+|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~~ 43 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAAE 43 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 99999999999998 8 88999999986654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.42 Score=42.32 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++++.|.|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDALE 44 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 4578999997 99999999999998 8 89999999886544
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.89 Score=49.74 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=33.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
.+|.|+|+|.+|+-+|..|+.. |. ..++++|.+.-....++
T Consensus 25 s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v~~sdL~ 65 (1008)
T TIGR01408 25 SNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKCQAWDLS 65 (1008)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCeecHhhCC
Confidence 6899999999999999999999 93 58999998764444333
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=0.32 Score=50.64 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||+|||+|..|...|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998764
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.34 E-value=0.55 Score=47.13 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||.|+|.|..|.+.+..|... | .+|+++|++++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~-G-----~~v~~~D~~~~ 46 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRF-G-----ARPTVCDDDPD 46 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH
Confidence 36899999999999999988888 8 89999997654
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.27 Score=51.33 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+.+|+|||+|-.|.++|..|++. | ++|+++++++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 357999999999999999999999 9 8999999976
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.3 Score=49.36 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 6899999999999999999999 9 89999998864
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.29 Score=48.73 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 8 89999998753
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=91.16 E-value=4 Score=34.64 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.5
Q ss_pred ceEEEEC-C-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIG-a-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||++|| . +++..+++..++.- | .+++++.+..
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 3 79999999999987 8 7788888766
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.36 Score=42.97 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=33.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++++.|.|+ |.+|..++..|++. | ++|.+++|+++.++.
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~-G-----~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ-G-----WQVIACGRNQSVLDE 40 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHH
Confidence 357889997 99999999999998 8 899999998765543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.34 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 458999999999999999999998 8 89999998753
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=91.09 E-value=2.5 Score=39.01 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=35.8
Q ss_pred cCHHHHhc--CCCEEEEecC--chhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 152 TNLQEAVW--DADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 152 ~d~~~a~~--~aDlVIiaVp--~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++ ++|++|=... --..+++++.+..+.+ ..+|..++|....
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 146 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSK 146 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCc
Confidence 68999999 8998776443 3468999999988765 4688888887664
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.32 Score=44.06 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.|.|||+|..|.+.|..|++. | .+|.++++.+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 489999999999999999998 8 89999999864
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.32 Score=47.37 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||||..|.++|..|++. | .+|.+++++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999988 8 8999998754
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.53 Score=41.79 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~~ 44 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGAE 44 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 99999999999998 8 89999999876544
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.33 Score=45.85 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||.|.|+ |.+|+.++..|.++.| ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 589999998 9999999999987414 78999998764
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.52 Score=42.19 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~~ 48 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKLA 48 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 78999997 99999999999998 8 89999999986554
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.41 Score=47.74 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..+||+|||+|..|...|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 347999999999999999999998 8 8999998875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.88 Score=42.30 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=33.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|+|+|-.+.+++..|++. |. .+|++++|++++.+.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~~ 161 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGKA 161 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHHH
Confidence 5899999999999999999987 72 469999999876543
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.4 Score=43.79 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.++|..|++. | ++|++.+|+++.++.
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVAA 43 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 57899998 99999999999998 8 899999999876543
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.34 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|.|||+|..|.++|..|++. | ++|+++++.++
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 35899999999999999999998 9 89999998874
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.51 Score=41.50 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|+|+ |.+|..++..|++. | ++|++++|++++.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~~ 44 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKELE 44 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHHH
Confidence 68999997 99999999999998 8 88999999886554
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.44 Score=42.70 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|+|+ |.+|.+++..|++. | ++|++.+|++...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~~ 45 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAGK 45 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999999 99999999999998 8 89999999876543
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.33 Score=44.21 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999998 8 8999999764
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.32 Score=48.52 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||+|..|.++|..|++. | ++|+++++.++.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~~ 37 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKET 37 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence 4699999999999999999999 9 899999997653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.33 Score=50.44 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=32.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCCC
Confidence 347999999999999999999998 9 89999998753
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.39 Score=47.30 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||+|||+|.-|...|..|.+. + ++++|+++++++.
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~~ 37 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDRD 37 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCCC
Confidence 68999999999999999999875 3 1378999999863
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.45 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=33.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++|.|.|+ |.+|.+++..|++. | ++|++.+|+++.+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 41 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDALQA 41 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 368999996 89999999999998 8 899999998765543
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.64 E-value=2.6 Score=38.35 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.-+|+|. | .++..+++. |. ..|+.+|.++..++.
T Consensus 119 ~~~~VLDiGcGs-G-~l~i~~~~~-g~----~~v~giDis~~~l~~ 157 (250)
T PRK00517 119 PGKTVLDVGCGS-G-ILAIAAAKL-GA----KKVLAVDIDPQAVEA 157 (250)
T ss_pred CCCEEEEeCCcH-H-HHHHHHHHc-CC----CeEEEEECCHHHHHH
Confidence 448999999998 5 345556665 61 359999999987654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.38 Score=48.70 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=32.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 46899999999999999999998 8 89999999875
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.35 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||+|..|.+.|..|++. | ++|+++++.++.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~~ 38 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPEP 38 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCCC
Confidence 5799999999999999999999 9 899999997654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.4 Score=52.10 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=33.2
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
....+||+|||+|.-|.+-|..|++. | |+|+++++.+
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 33458999999999999999999999 9 9999999875
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.34 Score=50.25 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=32.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 58999999999999999999998 8 89999998864
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.38 Score=47.33 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.++|.|+|+|.+|.++|..|++. | ++|+++++++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 37899999999999999999999 9 8999999975
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.3 Score=40.03 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|.|||+|.++..=+..|.+. | .+|+++++.-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 447999999999999988888888 8 7999998764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.63 Score=41.53 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=34.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|..++..|++. | ++|.+.+|+++..++
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGANA 46 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHHH
Confidence 368999999 99999999999998 8 899999999865543
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.31 Score=48.58 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++++|||||+-|.+-|+.|.+. | ++|+++.|+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCC
Confidence 47899999999999999999998 8 89998888764
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.42 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 347999999999999999999998 8 8999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.55 Score=41.18 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~~ 43 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAAE 43 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHHH
Confidence 68999998 99999999999998 8 88999999986554
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.47 Score=47.33 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 458999999999999999999998 8 8999998754
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.57 Score=40.02 Aligned_cols=40 Identities=18% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+.||+|+|+|..|..-+..+..- | ++|+.++.+++..++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLRQ 58 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHHh
Confidence 368999999999999988888776 8 899999998876544
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.39 Score=46.23 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 3489999998 99999999999998 8 8999999864
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.45 Score=46.82 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...|.|||+|.-|++.|..|+++ | ++|.++++.+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCCC
Confidence 36799999999999999999999 9 89999998753
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.39 Score=44.36 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=31.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTSD 36 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCcc
Confidence 68999997 99999999999998 8 899999998764
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.1 Score=42.06 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=33.0
Q ss_pred HHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 34 RLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.++....+..||+|+|| |-+|..+...|..+ -.. .+..|||...
T Consensus 19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~~ 64 (345)
T KOG1494|consen 19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIAN 64 (345)
T ss_pred ccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeeccc
Confidence 345555566789999998 89999999888776 211 2567888764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.5 Score=43.84 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=33.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.++|..|+++ | ++|.+.+|+++.++.
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67999998 99999999999998 8 899999999876554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.69 Score=40.90 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=33.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|..+|..|++. | ++|.+++|+++.++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEARE 46 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 378999997 99999999999998 8 899999998776543
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.46 Score=47.93 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|.|||+|..|.++|..+++. | .+|.+++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5799999999999999999999 9 8999999863
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.53 Score=41.54 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|..++..|++. | ++|++.+|+++.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~-g-----~~V~~~~r~~~~~~ 47 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR-G-----ARVVAAARNAAALD 47 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 68999998 89999999999998 8 89999999876554
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.62 Score=44.17 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=34.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|.+++..|++. | ++|++++|+++.++.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLEA 47 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 368999998 99999999999999 8 899999999876553
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.03 E-value=0.69 Score=41.75 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~~ 45 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA-G-----ARVAIVDIDADNGAA 45 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 368999998 99999999999999 9 899999999765543
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.42 Score=48.19 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|.||+++|..|++. + ++.+|+++++..
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~ 40 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLD 40 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCC
Confidence 5799999999999999999984 2 116899999875
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.53 Score=44.70 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=33.8
Q ss_pred CCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 40 EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 40 ~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
....|+|.|.|+ |.+|+.++..|+++ | ++|+.++|+.+.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~~ 46 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPDD 46 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCchh
Confidence 344678999998 99999999999999 8 899999998653
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.45 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=25.4
Q ss_pred EEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCch
Q 022050 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (303)
Q Consensus 47 ~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (303)
+|||||.-|.+.|..|.+. | .+ |++++++++-
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCC
Confidence 5999999999999999999 8 67 9999998754
|
... |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.36 Score=52.38 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..+||+|||+|.-|.+.|..|+.. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 458999999999999999999998 9 999999974
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.37 Score=47.42 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.6
Q ss_pred eEEEECCChHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~----~~G~~~~~~~V~l~~r~ 81 (303)
.|+|||+|..|.++|..|++ . | ++|+++++.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 48999999999999999998 7 7 899999984
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.56 Score=41.81 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=34.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|.+++..|++. | +.|++++|+++.++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~~ 48 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA-G-----AKVVLASRRVERLKE 48 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 378999997 99999999999998 8 789999999876554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.63 Score=41.62 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.+++..|++. | ++|.+.+|+++.+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~~ 48 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA-G-----AQVAIAARHLDALEK 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 67999998 89999999999999 9 899999998876543
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.42 Score=45.56 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++.|+|||+|.-|.+.|..|++. ++|+++++.++
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 46799999999999999999875 68999998864
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.5 Score=44.18 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||.|+|+ |.+|..++..|++. | ++|+++++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~ 34 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC 34 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 78999996 99999999999998 8 8999988754
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.3 Score=39.75 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred cCHHHHhc--CCCEEEEec--CchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 152 ~d~~~a~~--~aDlVIiaV--p~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++ ++|++|=+. +--..+++++.+..+.+ +.+|..++|....
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~ 145 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTSK 145 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCCc
Confidence 57889998 889877655 33468999999988765 4688888887654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.54 Score=41.28 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|..++..|++. | .+|++.+|+++.++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~-G-----~~v~~~~r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD-G-----WRVIATARDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 457888885 99999999999998 8 89999999876554
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.3 Score=53.31 Aligned_cols=78 Identities=22% Similarity=0.120 Sum_probs=50.9
Q ss_pred ccccCcceec-cCCchhhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCC-CCCeeEEEEecCCchh
Q 022050 11 SLSSNGLIHH-TNGSLEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPGRSV 85 (303)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~-~~~~~V~l~~r~~~~~ 85 (303)
+|...|.+.+ +--...+|-|...++++..... ..||.|+|+|.+|+-++..|+.. |.- .++..++++|.+.=..
T Consensus 383 ~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~Ve~ 461 (1008)
T TIGR01408 383 SLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDLIEK 461 (1008)
T ss_pred hCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCEecc
Confidence 3444443333 2223467888777887765433 37899999999999999999998 820 0012789998876433
Q ss_pred hhhh
Q 022050 86 DRAT 89 (303)
Q Consensus 86 ~~~~ 89 (303)
..++
T Consensus 462 SNLn 465 (1008)
T TIGR01408 462 SNLN 465 (1008)
T ss_pred cccC
Confidence 3333
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.57 Score=41.77 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.++|..|++. | ++|++.+|+++..+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 43 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARA-G-----ADVVLAARTAERLD 43 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 78999998 89999999999999 9 89999999886554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.76 Score=41.88 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=33.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+++.|.|+ |.+|..++..|++. | ++|++++|+.+.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 44 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL-G-----MKLVLADVQQDALD 44 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 368999997 89999999999999 8 89999999876554
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.5 Score=41.97 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchh
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTE 172 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~ 172 (303)
.+.+..++++...++|+|++++|...
T Consensus 62 ~l~v~g~~eeLl~~vDiVve~Tp~~~ 87 (333)
T TIGR01546 62 GIEVAGTLEDLLEKVDIVVDATPGGI 87 (333)
T ss_pred ceEecCCHHHHhhcCCEEEECCCCCC
Confidence 35566678888889999999999864
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=0.6 Score=40.51 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|++.|+|+..||..++..|++. | ++|.+.+|+++..+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~-G-----~~V~v~~R~~~~~~ 37 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK-G-----FHVSVIARREVKLE 37 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence 6899999877888999999998 8 89999999876543
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.66 E-value=2.1 Score=38.28 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.-++|+|||+|..|..=+..|... | .+|+++....
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 347999999999999999999998 8 8999998876
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.6 Score=42.57 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=33.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 42 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-G-----HRVVGTVRSEAARA 42 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC-c-----CEEEEEeCCHHHHH
Confidence 367999998 99999999999998 8 89999999987554
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.48 Score=45.99 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++-|+|||||.-|++.|..|+++ | .+|.++++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 9 89999999765
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.68 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|.|||+|.-|.+.|..+++. | .+|.+++++..
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~~-G-----~~V~vlEk~~~ 55 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAKN-G-----LKVCVLERSLA 55 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 5699999999999999999998 8 89999999864
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.79 Score=40.56 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|..++..|++. | ++|++++|+++..+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~-g-----~~V~~~~r~~~~~~~ 45 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA-G-----ATVILVARHQKKLEK 45 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc-C-----CEEEEEeCChHHHHH
Confidence 68999997 99999999999998 8 899999999875543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.58 Score=42.45 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|+++.|.|+ |.+|.+++..|++. | ++|++.+|+++.++
T Consensus 1 mk~vlItGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA-G-----YEVWATARKAEDVE 39 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 467889997 89999999999998 8 89999999876554
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.43 Score=47.83 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|+|||--|.+-|..|++. | ++|+++.+...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccCc
Confidence 7999999999999999999999 9 99999987653
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.67 Score=44.51 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.1
Q ss_pred hHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 30 ~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++++.+..... ..++|+|||+|..|.-+|..|++. | .+|+++.+.+.
T Consensus 129 ~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~L~~~-g-----~~Vtlv~~~~~ 175 (377)
T PRK04965 129 QEYRAAETQLR-DAQRVLVVGGGLIGTELAMDLCRA-G-----KAVTLVDNAAS 175 (377)
T ss_pred HHHHHHHHHhh-cCCeEEEECCCHHHHHHHHHHHhc-C-----CeEEEEecCCc
Confidence 34444433333 347899999999999999999988 8 89999998764
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.52 Score=47.33 Aligned_cols=33 Identities=12% Similarity=0.245 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.++|..|++. | .+|.++++..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 5799999999999999999999 9 8999999874
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.45 Score=43.55 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=31.7
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
||.|+|+ |.+|+.++..|.+. | ++|++..|++++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~~ 36 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSSS 36 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCccc
Confidence 5899999 99999999999998 8 8999999998643
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=89.49 E-value=3.6 Score=40.81 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=37.1
Q ss_pred hhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|-|.--|+.+..+.. ..+|+|+|+|.+|+-++..|+.. |. ..++++|.+.
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~-GI----g~~tIvD~~~ 54 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLP-GI----GSFTIVDGSK 54 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHc-CC----CeEEEECCCc
Confidence 334444555544322 36899999999999999999998 93 5799998764
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.72 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|.|||+|.-|.+.|..+++. | .+|.++++...
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 5699999999999999999998 8 89999998764
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.5 Score=42.52 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=51.3
Q ss_pred cccccccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||.. ..+....-|+=+.-+|-++|-.-..-.. ++++|.|.|-.|..+|..+..- | .+|.++..+|-
T Consensus 176 VNDs~t-K~~FDNrYGtgqS~~DgI~RaTn~liaG-K~vVV~GYG~vGrG~A~~~rg~-G-----A~ViVtEvDPI 243 (420)
T COG0499 176 VNDSVT-KSLFDNRYGTGQSLLDGILRATNVLLAG-KNVVVAGYGWVGRGIAMRLRGM-G-----ARVIVTEVDPI 243 (420)
T ss_pred ecchhh-hcccccccccchhHHHHHHhhhceeecC-ceEEEecccccchHHHHHhhcC-C-----CeEEEEecCch
Confidence 677754 2455555666677788888744333323 7899999999999999999887 8 89999999984
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=89.36 E-value=0.49 Score=45.64 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.|.|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999998 8 899999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.51 Score=48.12 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G-----~~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-G-----HAVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 47999999999999999999998 8 8899999764
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.58 Score=47.00 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=31.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||||..|.++|..|++. | .+|.++++.++.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~~ 40 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDGP 40 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCcc
Confidence 5799999999999999999998 8 899999998753
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.53 Score=46.80 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=31.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|++|.|||+|..|...|..+++. | ++|.+++++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 57899999999999999999998 8 8999999764
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.68 Score=41.27 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.+++..|++. | .+|.+.+|+++.+++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~-G-----~~v~~~~r~~~~~~~ 46 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFARE-G-----AKVVVADRDAAGGEE 46 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 78999998 89999999999998 8 899999999876543
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.65 Score=41.30 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=30.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|++|.|.|+ |.+|.+++..|++. | ++|++.+|++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~-g-----~~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK-G-----THVISISRTE 35 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc-C-----CEEEEEeCCc
Confidence 467999996 99999999999998 8 8999999986
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.69 Score=41.90 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|.+++..|++. | ++|.+++|+++..+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 45 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA-G-----AAVMIVGRNPDKLA 45 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 78999998 89999999999998 8 89999999876554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 303 | ||||
| 1wpq_A | 349 | Ternary Complex Of Glycerol 3-Phosphate Dehydrogena | 7e-09 | ||
| 1x0x_A | 354 | Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D | 2e-08 | ||
| 2pla_A | 349 | Crystal Structure Of Human Glycerol-3-Phosphate Deh | 6e-08 | ||
| 1x0v_A | 354 | Crystal Structure Of Homo Sapien Glycerol-3-Phospha | 9e-08 | ||
| 4fgw_A | 391 | Structure Of Glycerol-3-phosphate Dehydrogenase, Gp | 3e-05 | ||
| 1evy_A | 366 | Crystal Structure Of Leishmania Mexicana Glycerol-3 | 3e-04 | ||
| 1yj8_A | 375 | Initial Structural Analysis Of Plasmodium Falciparu | 7e-04 | ||
| 2guw_A | 484 | Crystal Structure Of Amp Nucleosidase From Salmonel | 7e-04 |
| >pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349 | Back alignment and structure |
|
| >pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354 | Back alignment and structure |
|
| >pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349 | Back alignment and structure |
|
| >pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354 | Back alignment and structure |
|
| >pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391 | Back alignment and structure |
|
| >pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366 | Back alignment and structure |
|
| >pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375 | Back alignment and structure |
|
| >pdb|2GUW|A Chain A, Crystal Structure Of Amp Nucleosidase From Salmonella Typhimurium Lt2 Length = 484 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-26
Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 53/270 (19%)
Query: 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIW-RRPGRSVDRA 88
R L K + PL+I +G+G W S + ++ + ++V R+W R
Sbjct: 11 RNLFDKLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENEV--RMWIRDE-----FV 63
Query: 89 TAEHLFEVINS-REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
E + ++IN+ E+ KY L L +
Sbjct: 64 NGERMVDIINNKHENT-----------KY----LKGVPLPHN------------------ 90
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERIT-VPVIISLAKGVEAELEA 206
+ ++L + DAD++I +P + V I +I ISL KG +
Sbjct: 91 IVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQ 150
Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
+ + I+ +P L G NIA ++ + ++ A I + +
Sbjct: 151 MKLC---SNYISDFLNIPC---SALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFD 204
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
P+F + + + E+ G LKN+ + G
Sbjct: 205 LPYFKINCVNETIEVEICGALKNIITLACG 234
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 1e-23
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 51/257 (19%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINS- 99
++ VG+G WGS ++ + + + +W + L E+IN+
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE-----DIGGKKLTEIINTQ 62
Query: 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW 159
E+V KY L L + + V ++ +A
Sbjct: 63 HENV-----------KY----LPGHKLPPN------------------VVAVPDVVQAAE 89
Query: 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
DADI+I +P ++ +++ + K ISL KGV+ + I +++I
Sbjct: 90 DADILIFVVPHQFIGKICDQLKGHLKAN---ATGISLIKGVDEGPNGLKLI---SEVIGE 143
Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278
G+P+ L G NIASE+ ++++ I C + L + ++ P+F + ++
Sbjct: 144 RLGIPM---SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVD 200
Query: 279 THEVMGGLKNVYAIGAG 295
T E+ G LKNV A+GAG
Sbjct: 201 TVEICGALKNVVAVGAG 217
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-21
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 54/252 (21%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ +GAGA GS + L D+ G +V RIW G D + I++
Sbjct: 2 IVSILGAGAMGSALSVPLVDN-GN---EV--RIW---GTEFDTEILKS----ISAG---- 44
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R R + + L++ + +A++V
Sbjct: 45 REHPR---LG--------------------------VKLNGVEIFWPEQLEKCLENAEVV 75
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ G+ + V I Y K+ I+ ++KG+ ++T + + R
Sbjct: 76 LLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLIDFDN---SVLTVPEAVWRLKHDL 128
Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
E + + GP IA E+ + +E + + +F V D++ E+
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEIT 188
Query: 284 GGLKNVYAIGAG 295
LKNVY+I
Sbjct: 189 SALKNVYSIAIA 200
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 1e-15
Identities = 52/282 (18%), Positives = 94/282 (33%), Gaps = 62/282 (21%)
Query: 18 IHHTNGSLEERLDELRRLMGKA---EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL 74
+HH + L ++ E I +GAG+WG+ +L G KV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARK-GQ---KV- 55
Query: 75 IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKD 134
R+W VD AE +N+R YL +
Sbjct: 56 -RLWSYESDHVDEMQAEG----VNNR------------YLP-------NYPFPET----- 86
Query: 135 GFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194
LK +L+ ++ ++ +PS EV + + I
Sbjct: 87 -------------LKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAK---TRIA 130
Query: 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA 253
KG+ +++ + + + GP++A+E+ +
Sbjct: 131 WGTKGLAKGSR------LLHEVVATE--LGQVPMAVISGPSLATEVAANLPTAVSLASNN 182
Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAG 295
++ K L + L F V+ N D++ E+ G +KN+ AI G
Sbjct: 183 SQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATG 224
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 6e-15
Identities = 45/256 (17%), Positives = 84/256 (32%), Gaps = 59/256 (23%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W V + N
Sbjct: 17 KAVVFGSGAFGTALAMVLSKK-CR---EV--CVWHMNEEEVRLVNEKR----ENVL---- 62
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+LK L ++ + +++++A A+I+
Sbjct: 63 --------FLK-------GVQLASN------------------ITFTSDVEKAYNGAEII 89
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E P ++I
Sbjct: 90 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK-----FPAEIIGEF-- 142
Query: 223 VPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFL--RRPHFTVWDNGDLVT 279
+P + L GP+ A E+ + I + L + + F W D V
Sbjct: 143 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVG 202
Query: 280 HEVMGGLKNVYAIGAG 295
EV +KNV AIG+G
Sbjct: 203 CEVASAVKNVLAIGSG 218
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 2e-13
Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 77/258 (29%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
+R +GAG+WG+VF ML ++ G +V +W R + ++IN
Sbjct: 14 EMRFFVLGAGSWGTVFAQMLHEN-GE---EV--ILW---ARRKEIV------DLINVS-- 56
Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
Y++ ++ + ++ +L E + D
Sbjct: 57 ------HTSPYVE--------------------------ESKI-TVRATNDL-EEIKKED 82
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222
I++ +P +E + + ++++L+KG+E + ++++ G
Sbjct: 83 ILVIAIPVQYIREHLLRL------PVKPSMVLNLSKGIEIKTGK-----RVSEIVEEILG 131
Query: 223 VPIENILYLGGPNIASEIYNKEYANAR-----ICGAEKWRKPLAKFLRRPHFTVWDNGDL 277
P L GP+ A E+ A+ + A + K L K + +F V+ D+
Sbjct: 132 CPY---AVLSGPSHAEEV-------AKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDV 181
Query: 278 VTHEVMGGLKNVYAIGAG 295
V E+ G LKNV AI AG
Sbjct: 182 VGVEIAGALKNVIAIAAG 199
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 42/235 (17%)
Query: 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103
+++ G G + + G +V R+ +R
Sbjct: 3 VKVCVCGGGNGAHTLSGLAASRDGV---EV--RVLTLFADEAER---------------- 41
Query: 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADI 163
+ + V + G + + P + + + A+ AD+
Sbjct: 42 WTKALGADELTVIVNEKDGTQ----------------TEVKSRPKVITKDPEIAISGADV 85
Query: 164 VINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV 223
VI +P+ + F+ ++ Y ++ + V + G E + + + +
Sbjct: 86 VILTVPAFAHEGYFQAMAPYVQDSALI-VGLPSQAGFEFQCRDILGDKAAAVSMMSFETL 144
Query: 224 PIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR----RPHFTVWDN 274
P + G + A + I G K PL+ P F + +
Sbjct: 145 PWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKH 199
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 34/263 (12%), Positives = 65/263 (24%), Gaps = 54/263 (20%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+G G G F A L G V W + +
Sbjct: 6 TYAVLGLGNGGHAFAAYLALK-GQ---SV--LAWDIDAQRIKEIQDRGAIIA-------- 51
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+ P + +++ AV DAD++
Sbjct: 52 --------EGPGLA------------------------GTAHPDLLTSDIGLAVKDADVI 79
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ +P+ + I+ Y E + + G + + P I + +
Sbjct: 80 LIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSML 139
Query: 225 IENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHF--TVWDNGDL 277
G + I E+ L +++ + T N +
Sbjct: 140 FTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQYVAVENVLHTSLTNVNA 199
Query: 278 VTHEVMGGLKNVYAIGAGTIYFL 300
V H + L N +GT +
Sbjct: 200 VMH-PLPTLLNAARCESGTPFQY 221
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Length = 358 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 7/152 (4%)
Query: 148 LKVVTNLQEAVWDADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
LKV ++ +EAV ADIVI LP + ++ ++ + E V ++ A++
Sbjct: 129 LKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
Query: 207 VPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265
VP ++ +Y+ + E NK Y +I + ++ P
Sbjct: 189 DLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANL--- 245
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTI 297
V D VT V GL +
Sbjct: 246 --IGPVCDMCSAVTATVYAGLLAYRDAVTKIL 275
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 100.0 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 100.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.96 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.95 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.94 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.94 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.92 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.91 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.89 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.88 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.85 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.84 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.84 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.8 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.79 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.78 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.78 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.77 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.77 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.76 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.76 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.75 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.73 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.72 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.68 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.67 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.65 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.64 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.64 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.63 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.63 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.61 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.61 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.6 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.59 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.59 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.59 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.59 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.58 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.58 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.58 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.57 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.57 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.57 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.56 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.56 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.55 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.55 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.55 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.54 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.54 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.54 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.53 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.53 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.53 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.52 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.52 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.52 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.52 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.52 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.51 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.5 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.49 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.49 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.48 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.48 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.47 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.47 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.47 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.47 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.46 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.45 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.44 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.13 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.41 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.41 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.4 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.4 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.38 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.36 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.33 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.33 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.32 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.31 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.3 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.27 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.26 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.23 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.19 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 99.08 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.07 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.02 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 99.0 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.96 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.91 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.82 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.82 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.78 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.77 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.75 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.73 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.69 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.67 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.62 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.62 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.61 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.61 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.6 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.58 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.58 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.56 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.55 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.52 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.51 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.51 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.51 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.5 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.49 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.44 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.44 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.44 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.42 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.41 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.4 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.38 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.36 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.36 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.35 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.34 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.31 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.3 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.3 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.29 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.27 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.26 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.26 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.26 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.26 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.25 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.24 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.24 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.24 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.23 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.22 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.22 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.22 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.21 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.21 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.21 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.17 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.17 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.16 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.14 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.13 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.12 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.12 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.12 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.11 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.11 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.1 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.09 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.08 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.07 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.07 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.07 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.06 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.05 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.04 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.04 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.04 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.03 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.03 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.03 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.02 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.99 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.99 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.98 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.97 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.97 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.96 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.95 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.94 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.94 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.93 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.93 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.92 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.9 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.89 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.88 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.88 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.87 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.87 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.87 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.86 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.85 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.83 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.83 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.81 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.8 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.8 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.79 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.77 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.77 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.76 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.74 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.73 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.72 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.71 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.7 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.7 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.69 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.68 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.65 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.64 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.62 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.6 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.59 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.57 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.57 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.55 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.54 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.51 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.51 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.49 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.49 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.49 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.49 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.48 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.48 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.48 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.48 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.45 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.45 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.45 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.43 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.41 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.4 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.39 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.37 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.36 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.35 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.32 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.31 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.29 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.29 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.28 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.26 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.25 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.22 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.21 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.18 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.17 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.17 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.17 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.14 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.14 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.14 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.13 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.11 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.11 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.11 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.08 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.07 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.07 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.04 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.02 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.01 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.98 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 96.97 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.97 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.97 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.97 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.96 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.94 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 96.93 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.93 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.91 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.91 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.89 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 96.85 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.85 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.84 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.83 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.83 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.79 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 96.77 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.74 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.73 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.71 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.69 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.69 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.69 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.68 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.62 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.6 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.55 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.54 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.53 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 96.49 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.49 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.49 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.48 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.44 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.4 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.39 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.39 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.38 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.38 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 96.36 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.35 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.35 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.34 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.33 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.26 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.26 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.04 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.02 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 96.0 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 95.98 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.96 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.95 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.95 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.93 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.9 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.88 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.76 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.68 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.67 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 95.63 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.62 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.59 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.58 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.57 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.51 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.46 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 95.45 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.43 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 95.38 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.37 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 95.37 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 95.35 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.33 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.32 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.3 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.28 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 95.28 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.25 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 95.21 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.18 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 95.13 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.1 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 95.09 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.02 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.01 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 94.99 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.99 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 94.99 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.97 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.96 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 94.96 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.95 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.91 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.91 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.89 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 94.88 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.87 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.81 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.79 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 94.73 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 94.66 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.65 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 94.64 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.63 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.61 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 94.6 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 94.58 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 94.48 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 94.44 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 94.36 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 94.34 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 94.29 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 94.29 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 94.24 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.23 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 94.21 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 94.21 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 94.18 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 94.17 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 94.16 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.08 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.08 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.07 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 94.03 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 94.03 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 93.99 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 93.97 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.96 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.96 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 93.96 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 93.95 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 93.91 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 93.86 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 93.81 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 93.8 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 93.8 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 93.77 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 93.75 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.74 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 93.72 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 93.71 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 93.65 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 93.65 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 93.61 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 93.61 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.61 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 93.59 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.59 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 93.58 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 93.58 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.54 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 93.49 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 93.45 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 93.44 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 93.42 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 93.42 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.41 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 93.3 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 93.3 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 93.28 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 93.28 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 93.24 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.23 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 93.22 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 93.19 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 93.18 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 93.17 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.14 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 93.14 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 93.13 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 93.11 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 93.11 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 93.1 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 93.09 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 93.07 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 93.04 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 93.02 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 93.01 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.01 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 92.97 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 92.97 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 92.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 92.95 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 92.93 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 92.92 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 92.9 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 92.88 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 92.83 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 92.82 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 92.78 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.77 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 92.74 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 92.73 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 92.73 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 92.72 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 92.72 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 92.71 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 92.71 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 92.67 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 92.63 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 92.63 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 92.62 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 92.55 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 92.55 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 92.5 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.48 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 92.48 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 92.43 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 92.41 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.39 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 92.35 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 92.32 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 92.29 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 92.28 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 92.27 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 92.21 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 92.2 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 92.19 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 92.11 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 92.09 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 92.08 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.05 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 92.03 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 91.96 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 91.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 91.94 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 91.93 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 91.93 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 91.91 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 91.83 |
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=317.73 Aligned_cols=216 Identities=24% Similarity=0.366 Sum_probs=177.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCC-C--CCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY-L--RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~-~--~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.+.||+|||+|+||+++|..|+++ |. + ...++|++|.|+++... +.+.+.++..+ +|+.|++++
T Consensus 33 ~p~KI~ViGaGsWGTALA~~la~n-g~~~~~~~~~~V~lw~r~~e~~~----~~~~e~in~~~-------~N~~YLpgv- 99 (391)
T 4fgw_A 33 KPFKVTVIGSGNWGTTIAKVVAEN-CKGYPEVFAPIVQMWVFEEEING----EKLTEIINTRH-------QNVKYLPGI- 99 (391)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHH-HHHCTTTEEEEEEEECCCCBSSS----CBHHHHHTTTC-------CBTTTBTTC-
T ss_pred CCCeEEEECcCHHHHHHHHHHHHc-CCCccccCCceEEEEEcchHhhh----HHHHHHHHhcC-------cCcccCCCC-
Confidence 467999999999999999999998 61 0 00025999999987432 12233455443 478888865
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
+++ .++.+++|+.+++++||+||++||++.++++++++++++++ +.++|+++|
T Consensus 100 ------~Lp------------------~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~---~~~iv~~~K 152 (391)
T 4fgw_A 100 ------TLP------------------DNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDS---HVRAISCLK 152 (391)
T ss_dssp ------CCC------------------SSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCT---TCEEEECCC
T ss_pred ------cCC------------------CCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCC---CceeEEecc
Confidence 342 37999999999999999999999999999999999999987 789999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCC---------hhhHHHHHHHhcCCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA---------EKWRKPLAKFLRRPH 268 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~---------~~~~~~i~~lf~~~g 268 (303)
|++..+ +...++++++.+.++. ++++++||+||.|++.+.|+.+++ +.+ +...+.++++|++++
T Consensus 153 Gie~~~---~~~~~~se~i~e~~~~---~~~vLsGPs~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~ 226 (391)
T 4fgw_A 153 GFEVGA---KGVQLLSSYITEELGI---QCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPY 226 (391)
T ss_dssp SCEEET---TEEECHHHHHHHHHCC---EEEEEECSCCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTT
T ss_pred cccccc---ccchhHHHHHHHHhCc---cceeccCCchHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCC
Confidence 998752 1346789999998873 578999999999999999987665 332 124688999999999
Q ss_pred eEEEecCChhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 022050 269 FTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 269 ~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
|++|.++|++|+|+||+||||||||+||++||+++
T Consensus 227 frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G 261 (391)
T 4fgw_A 227 FHVSVIEDVAGISICGALKNVVALGCGFVEGLGWG 261 (391)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred EEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999863
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=286.15 Aligned_cols=204 Identities=23% Similarity=0.339 Sum_probs=177.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++..+ .|+.|+++.
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~-G-----~~V~l~~r~~~~~~~i~~~~----------------~~~~~l~g~---- 81 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARK-G-----QKVRLWSYESDHVDEMQAEG----------------VNNRYLPNY---- 81 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSCHHHHHHHHHHS----------------SBTTTBTTC----
T ss_pred cCCeEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHHcC----------------CCcccCCCC----
Confidence 358999999999999999999999 8 89999999998877654322 244555543
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++ .++.+++|++++++++|+||++||+++++++++++.+++++ +++|++++||+.
T Consensus 82 ---~l~------------------~~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~---~~ivvs~~kGi~ 137 (356)
T 3k96_A 82 ---PFP------------------ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDA---KTRIAWGTKGLA 137 (356)
T ss_dssp ---CCC------------------TTEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCT---TCEEEECCCSCB
T ss_pred ---ccC------------------CCeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 221 36888999998999999999999999999999999999987 789999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCChhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~ 280 (303)
++ + .++++++.+.++. .++++++||+++.+++.+.++.+++ +.+.+..+.++++|++.+|+++.++|++|+
T Consensus 138 ~~-----t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~ 209 (356)
T 3k96_A 138 KG-----S-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGV 209 (356)
T ss_dssp TT-----T-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHH
T ss_pred cC-----c-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHH
Confidence 86 4 7889999999873 4578999999999999999877665 567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCC
Q 022050 281 EVMGGLKNVYAIGAGTIYFLVMS 303 (303)
Q Consensus 281 e~~~~lkNv~Ai~~G~~~gl~~~ 303 (303)
||+|++||||||++|+++|++++
T Consensus 210 e~~galkNviaia~G~~~gl~~g 232 (356)
T 3k96_A 210 ELCGSVKNILAIATGISDGLKLG 232 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999864
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=231.93 Aligned_cols=209 Identities=23% Similarity=0.307 Sum_probs=165.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCC--CeeEEEEecCCc-----hhhhhhhhhHHHHHhhhhhHHHHhhhhcccch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~ 115 (303)
+|||+|||+|+||+++|..|+++ |...+ .++|++|+|+++ +++.++..+ .++.+++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~----------------~~~~~~~ 83 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEFVNGERMVDIINNKH----------------ENTKYLK 83 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC---CCHHHHHHHHC----------------BCTTTST
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChhhhhHHHHHHHHhcC----------------cccccCC
Confidence 57999999999999999999998 61000 058999999987 555433211 1222333
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH----HhhccCCCC
Q 022050 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR----YWKERITVP 191 (303)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~----~l~~~~~~~ 191 (303)
+. .+ ..++.+++|++++++++|+||++||+++++++++++.+ ++++ ++
T Consensus 84 ~~-------~~------------------~~~i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~---~~ 135 (375)
T 1yj8_A 84 GV-------PL------------------PHNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIAS---HA 135 (375)
T ss_dssp TC-------BC------------------CTTEEEESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCT---TC
T ss_pred cc-------cC------------------cCCeEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCC---CC
Confidence 21 11 02577888888888999999999999999999999988 8877 78
Q ss_pred EEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeE
Q 022050 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~ 270 (303)
+|++++||+.+.. .+...+++.+.+.++ .+..++.||+++.++..+.+..++. +.+.+..+.++++|+..+++
T Consensus 136 ivvs~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~ 209 (375)
T 1yj8_A 136 KAISLTKGFIVKK---NQMKLCSNYISDFLN---IPCSALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFDLPYFK 209 (375)
T ss_dssp EEEECCCSCEEET---TEEECHHHHHHHHSS---SCEEEEECSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEE
T ss_pred EEEEeCCccccCC---ccccCHHHHHHHHcC---CCEEEEeCCchHHHHHhCCCeEEEEecCCHHHHHHHHHHhCCCCeE
Confidence 9999999998730 123567788877765 2467899999999999888766555 45667789999999999999
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHhhhcC
Q 022050 271 VWDNGDLVTHEVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
++.++|+.+++|+|++||++++++|+++|+.+
T Consensus 210 ~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~ 241 (375)
T 1yj8_A 210 INCVNETIEVEICGALKNIITLACGFCDGLNL 241 (375)
T ss_dssp EEEESCSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999875
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=213.97 Aligned_cols=209 Identities=25% Similarity=0.351 Sum_probs=163.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCC--CeeEEEEecCCc-----hhhhhhhhhHHHHHhhhhhHHHHhhhhcccch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~ 115 (303)
+|||+|||+|+||+++|..|+++ |...+ .++|++|+|+++ +.+.++..+ .+..+++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~----------------~~~~~~~ 70 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQH----------------ENVKYLP 70 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHS----------------CCTTTST
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcC----------------cccccCC
Confidence 47999999999999999999988 51000 068999999987 444332111 1111222
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEE
Q 022050 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (303)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs 195 (303)
+. .+ ..++.+++|+.++++++|+||++||++.+++++++|.+++++ +++|++
T Consensus 71 ~~-------~~------------------~~~~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~---~~ivv~ 122 (354)
T 1x0v_A 71 GH-------KL------------------PPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKA---NATGIS 122 (354)
T ss_dssp TC-------CC------------------CTTEEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCT---TCEEEE
T ss_pred cc-------cC------------------ccCeEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 11 11 025777888888889999999999999999999999998887 789999
Q ss_pred eeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEec
Q 022050 196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 196 ~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
++||+..+. .+...+++.+.++++ .+..++.||+++.++..+.+..++. +.+.+..+.++++|+..+++++.+
T Consensus 123 ~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 196 (354)
T 1x0v_A 123 LIKGVDEGP---NGLKLISEVIGERLG---IPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVV 196 (354)
T ss_dssp CCCCBCSSS---SSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEE
T ss_pred ECCccCCCC---CccccHHHHHHHHcC---CCEEEEECCCcHHHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEc
Confidence 999998520 123567777877775 2467899999999998887765554 455677899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhcC
Q 022050 275 GDLVTHEVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
+|+.+++|++++||++++++|+++|+.+
T Consensus 197 ~di~~~~~~k~~~N~~~~~~g~~~~~~~ 224 (354)
T 1x0v_A 197 QEVDTVEICGALKNVVAVGAGFCDGLGF 224 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999875
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=215.24 Aligned_cols=194 Identities=27% Similarity=0.447 Sum_probs=156.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++++ .+. ++++.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~-G-----~~V~~~~r~~~~~~~l~~~g----------------~~~-~~~~~---- 65 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHEN-G-----EEVILWARRKEIVDLINVSH----------------TSP-YVEES---- 65 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHHS----------------CBT-TBTTC----
T ss_pred cCCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHhC----------------Ccc-cCCCC----
Confidence 359999999999999999999999 8 99999999988776544321 011 22221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
. .++.+++++.+ ++++|+||++||+++++++++++.+ + +++||+++||++
T Consensus 66 ---~--------------------~~~~~~~~~~~-~~~aDvVil~vk~~~~~~v~~~l~~---~---~~~vv~~~nGi~ 115 (335)
T 1z82_A 66 ---K--------------------ITVRATNDLEE-IKKEDILVIAIPVQYIREHLLRLPV---K---PSMVLNLSKGIE 115 (335)
T ss_dssp ---C--------------------CCSEEESCGGG-CCTTEEEEECSCGGGHHHHHTTCSS---C---CSEEEECCCCCC
T ss_pred ---e--------------------eeEEEeCCHHH-hcCCCEEEEECCHHHHHHHHHHhCc---C---CCEEEEEeCCCC
Confidence 0 04667788887 8899999999999999999988765 4 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
+. ....+++.+.+.++ ....++.||+++.++..|.+..++.+..+ .+.++++|+..+++++.++|+.+++
T Consensus 116 ~~-----~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~ 185 (335)
T 1z82_A 116 IK-----TGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVE 185 (335)
T ss_dssp TT-----TCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHH
T ss_pred CC-----ccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCCCEEEEecCchHHHH
Confidence 75 34567777777664 24678999999999998886555444322 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 022050 282 VMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 282 ~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|+|++||++++++|+..|+.+
T Consensus 186 ~~k~l~N~~~~~~g~~~g~~~ 206 (335)
T 1z82_A 186 IAGALKNVIAIAAGILDGFGG 206 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHhcCCC
Confidence 999999999999999998754
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=210.99 Aligned_cols=202 Identities=24% Similarity=0.391 Sum_probs=162.5
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||+|+||+++|..|+++ | ++|++|+|++++++.+++.+ .++.++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~~~~~l~~~~----------------~~~~~~~~~------- 67 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNEKR----------------ENVLFLKGV------- 67 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-E-----EEEEEECSCHHHHHHHHHHT----------------BCTTTSTTC-------
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------ccccccccc-------
Confidence 999999999999999999998 8 99999999988776543221 111222211
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHH----HHHHhhccCCCCEEEEeeccC
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~----l~~~l~~~~~~~iivs~~nGi 200 (303)
.+ ..++.+++++.++++++|+||++||++++++++++ +.++++++ +++|++++||+
T Consensus 68 ~~------------------~~~~~~~~~~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~--~~ivv~~~~gi 127 (366)
T 1evy_A 68 QL------------------ASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK--QVPVLVCTKGI 127 (366)
T ss_dssp BC------------------CTTEEEESCHHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHH--TCCEEECCCSC
T ss_pred cc------------------ccceeeeCCHHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCcc--CCEEEEECCcC
Confidence 11 02577888898888999999999999999999999 99888641 36899999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCC--CeEEEecCCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP--HFTVWDNGDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~--g~~~~~~~Di 277 (303)
.+. ....+++.+.++++. ++..++.||+++.++..+.+..++. +.+.+..+.++.+|+.. +++++.++|+
T Consensus 128 ~~~-----~~~~~~~~l~~~~~~--~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 128 ERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp CTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred CCc-----cccCHHHHHHHHCCC--CcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 875 345667777776653 3467899999999998887765554 45567789999999999 9999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC
Q 022050 278 VTHEVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 278 ~g~e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
.+++|++++||++++++|+++|+.+
T Consensus 201 ~~~~~~k~~~n~~~~~~~~~~~~~~ 225 (366)
T 1evy_A 201 VGCEVASAVKNVLAIGSGVANGLGM 225 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999865
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-25 Score=210.03 Aligned_cols=192 Identities=18% Similarity=0.158 Sum_probs=149.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|+||+++|..|+++ | ++|++| ++++++++++++++ +. ..++.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~-G-----~~V~l~-~~~~~~~~i~~~g~----------------~~-~~~~~---- 69 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA-G-----HEVILI-ARPQHVQAIEATGL----------------RL-ETQSF---- 69 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEE-CCHHHHHHHHHHCE----------------EE-ECSSC----
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC-C-----CeEEEE-EcHhHHHHHHhCCe----------------EE-EcCCC----
Confidence 469999999999999999999999 8 999999 88877776543321 00 01110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++ .++.+++++++ +.++|+||++||++++++++++|.+++++ +++|++++||++
T Consensus 70 ---~~~------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~ 124 (318)
T 3hwr_A 70 ---DEQ------------------VKVSASSDPSA-VQGADLVLFCVKSTDTQSAALAMKPALAK---SALVLSLQNGVE 124 (318)
T ss_dssp ---EEE------------------ECCEEESCGGG-GTTCSEEEECCCGGGHHHHHHHHTTTSCT---TCEEEEECSSSS
T ss_pred ---cEE------------------EeeeeeCCHHH-cCCCCEEEEEcccccHHHHHHHHHHhcCC---CCEEEEeCCCCC
Confidence 110 25667788764 68999999999999999999999999987 789999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCC-----ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 202 AELEAVPRIITPTQMINRATGVPI-----ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~-----~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.. +.+.+.++.+. ...++++||+++.+++.|.+. ++. .+..+.++++|++.+|+++.++|
T Consensus 125 ~~-----------~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~---ig~-~~~~~~l~~~l~~~~~~~~~~~D 189 (318)
T 3hwr_A 125 NA-----------DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELV---IEP-TSHGANLAAIFAAAGVPVETSDN 189 (318)
T ss_dssp HH-----------HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEE---ECC-CTTTHHHHHHHHHTTCCEEECSC
T ss_pred cH-----------HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEE---EcC-CHHHHHHHHHHHhCCCCcEechH
Confidence 75 34556664111 123578999999988877533 333 45678899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 277 LVTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
+.+.+|.|+++|+...+.+.+.|+.
T Consensus 190 i~~~~w~Kl~~N~~~n~l~al~~~~ 214 (318)
T 3hwr_A 190 VRGALWAKLILNCAYNALSAITQLP 214 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHCCC
Confidence 9999999999999999999988764
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=192.51 Aligned_cols=198 Identities=22% Similarity=0.319 Sum_probs=152.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec--CCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+||+++|..|+++ | ++|++|+| ++++++.++.+++ +..+ +.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~--g~---- 52 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKSISAGRE----------------HPRL--GV---- 52 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHHHHTTCC----------------BTTT--TB----
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEccCCHHHHHHHHHhCc----------------Cccc--Cc----
Confidence 7999999999999999999999 8 89999999 8776654332110 0000 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEec--CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVT--NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~--d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+ .++.+++ ++.++++++|+||++||++.++++++++.+ +++ +++|++++||
T Consensus 53 ---~~-------------------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~---~~~vv~~~ng 106 (335)
T 1txg_A 53 ---KL-------------------NGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP-YLK---DQYIVLISKG 106 (335)
T ss_dssp ---CC-------------------CSEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCC---SCEEEECCCS
T ss_pred ---cc-------------------cceEEecHHhHHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCC---CCEEEEEcCc
Confidence 00 1356666 787788999999999999999999999999 887 7899999999
Q ss_pred C---ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEecC
Q 022050 200 V---EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 200 i---~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
+ .+. +...+++.+.+.++.. ++..++.||+++.++..+.+..++++ .+.+..+.++++|+..+++++..+
T Consensus 107 ~~~~~~~-----~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 180 (335)
T 1txg_A 107 LIDFDNS-----VLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (335)
T ss_dssp EEEETTE-----EEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred CccCCCC-----cCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 9 443 1223344444433321 24678999999999888776544454 456678999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 276 DLVTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 276 Di~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
|+.+.+|+|+++|++++++|++.++.
T Consensus 181 di~~~~~~k~~~N~~~~~~~~~~~~~ 206 (335)
T 1txg_A 181 DIIGTEITSALKNVYSIAIAWIRGYE 206 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-23 Score=196.24 Aligned_cols=194 Identities=22% Similarity=0.188 Sum_probs=143.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|++ .++++++++ ...... ++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~g~-------------------~~~~~~---g~ 52 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS-G-----EDVHFLLRRD--YEAIAGNGL-------------------KVFSIN---GD 52 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT-S-----CCEEEECSTT--HHHHHHTCE-------------------EEEETT---CC
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEEcCc--HHHHHhCCC-------------------EEEcCC---Ce
Confidence 7999999999999999999999 8 8999999986 344332221 111100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
..+ +++.++++.++ +.++|+||++||++++++++++|++++.+ +++|++++||++..
T Consensus 53 ~~~-------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~l~nGi~~~ 109 (312)
T 3hn2_A 53 FTL-------------------PHVKGYRAPEE-IGPMDLVLVGLKTFANSRYEELIRPLVEE---GTQILTLQNGLGNE 109 (312)
T ss_dssp EEE-------------------SCCCEESCHHH-HCCCSEEEECCCGGGGGGHHHHHGGGCCT---TCEEEECCSSSSHH
T ss_pred EEE-------------------eeceeecCHHH-cCCCCEEEEecCCCCcHHHHHHHHhhcCC---CCEEEEecCCCCcH
Confidence 001 13556777765 68999999999999999999999999987 78999999999864
Q ss_pred cccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.+.+.++... ...+.+.||+++.+.+.+...+... ..+.+..+.++++|++.+|+++.++|
T Consensus 110 -----------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 178 (312)
T 3hn2_A 110 -----------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTDD 178 (312)
T ss_dssp -----------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECSC
T ss_pred -----------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEEChH
Confidence 45677775321 0123457899988766543211111 12345789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 277 LVTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
+.+.+|.|+++|+...+.+.+.|+.
T Consensus 179 i~~~~w~Kl~~N~~~n~l~al~~~~ 203 (312)
T 3hn2_A 179 LKRARWEKLVWNIPFNGLCALLQQP 203 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHCCC
Confidence 9999999999999988888887754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-23 Score=191.56 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=138.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|++ .++++++++ ..... ..++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~Gl-------------------~~~~~--~~g~ 53 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-G-----HCVSVVSRSD--YETVKAKGI-------------------RIRSA--TLGD 53 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-T-----CEEEEECSTT--HHHHHHHCE-------------------EEEET--TTCC
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCh--HHHHHhCCc-------------------EEeec--CCCc
Confidence 8999999999999999999999 8 8999999986 244432221 11100 0011
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
..+ +++.++++++++.+++|+||+|||++++++++++|++++.+ +++|++++||++..
T Consensus 54 ~~~-------------------~~~~~~~~~~~~~~~~DlVilavK~~~~~~~l~~l~~~l~~---~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 54 YTF-------------------RPAAVVRSAAELETKPDCTLLCIKVVEGADRVGLLRDAVAP---DTGIVLISNGIDIE 111 (320)
T ss_dssp EEE-------------------CCSCEESCGGGCSSCCSEEEECCCCCTTCCHHHHHTTSCCT---TCEEEEECSSSSCS
T ss_pred EEE-------------------eeeeeECCHHHcCCCCCEEEEecCCCChHHHHHHHHhhcCC---CCEEEEeCCCCChH
Confidence 011 13556778877656899999999999999999999999987 78999999999875
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcH-------HHHhccCceEEEEe----CChhhHHHHHHHhcCCCeEEE
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIA-------SEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a-------~ev~~g~~~~~~~~----~~~~~~~~i~~lf~~~g~~~~ 272 (303)
+.+.+.++.. . +++||.+. .++..+.+..+.++ .+.+..+.++++|++.+|+++
T Consensus 112 -----------~~l~~~~~~~--~--vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~~ 176 (320)
T 3i83_A 112 -----------PEVAAAFPDN--E--VISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDGI 176 (320)
T ss_dssp -----------HHHHHHSTTS--C--EEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCEE
T ss_pred -----------HHHHHHCCCC--c--EEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCce
Confidence 4677777642 1 34444443 22222223223332 234578999999999999999
Q ss_pred ecCChhHHHHHHHHHHH----HHHHHHHHhhh
Q 022050 273 DNGDLVTHEVMGGLKNV----YAIGAGTIYFL 300 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv----~Ai~~G~~~gl 300 (303)
.++|+.+.+|.|+++|+ +++++|+..|.
T Consensus 177 ~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~ 208 (320)
T 3i83_A 177 ATENITTARWQKCVWNAAFNPLSVLSGGLDTL 208 (320)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred ECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHH
Confidence 99999999999999976 67777765553
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-22 Score=185.17 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=146.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|+ +++++++++++ +. ..++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~-g-----~~V~~~~r~-~~~~~~~~~g~----------------~~-~~~~~----- 53 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA-G-----EAINVLARG-ATLQALQTAGL----------------RL-TEDGA----- 53 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT-T-----CCEEEECCH-HHHHHHHHTCE----------------EE-EETTE-----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEECh-HHHHHHHHCCC----------------EE-ecCCC-----
Confidence 48999999999999999999999 8 899999996 45554332221 00 00100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++ .++.+++++++ +.++|+||+|||++++++++++|.+++++ +++|++++||++.
T Consensus 54 --~~~------------------~~~~~~~~~~~-~~~~D~Vilavk~~~~~~~~~~l~~~l~~---~~~iv~~~nGi~~ 109 (335)
T 3ghy_A 54 --THT------------------LPVRATHDAAA-LGEQDVVIVAVKAPALESVAAGIAPLIGP---GTCVVVAMNGVPW 109 (335)
T ss_dssp --EEE------------------ECCEEESCHHH-HCCCSEEEECCCHHHHHHHHGGGSSSCCT---TCEEEECCSSSCT
T ss_pred --eEE------------------EeeeEECCHHH-cCCCCEEEEeCCchhHHHHHHHHHhhCCC---CCEEEEECCCCcc
Confidence 010 14667788876 58999999999999999999999998887 7899999999852
Q ss_pred ccc-c--ccccC-----CHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCC
Q 022050 203 ELE-A--VPRII-----TPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRP 267 (303)
Q Consensus 203 ~~~-~--~~~~~-----~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~ 267 (303)
... . ..+.. ...+.+.+.++... ...+.+.+|+++.+...+...+... +.+.+..+.++++|++.
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~ 189 (335)
T 3ghy_A 110 WFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRA 189 (335)
T ss_dssp TTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHT
T ss_pred ccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhC
Confidence 100 0 00111 12346777775321 0115678999988766553211111 12345789999999999
Q ss_pred CeEEEecCChhHHHHHHHH----HHHHHHHHHHHhhhc
Q 022050 268 HFTVWDNGDLVTHEVMGGL----KNVYAIGAGTIYFLV 301 (303)
Q Consensus 268 g~~~~~~~Di~g~e~~~~l----kNv~Ai~~G~~~gl~ 301 (303)
+|+++.++|+.+..|.+.+ +|++++++|+..|..
T Consensus 190 g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~ 227 (335)
T 3ghy_A 190 GLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRI 227 (335)
T ss_dssp TCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHH
T ss_pred CCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHH
Confidence 9999999999999988855 899999999888753
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-21 Score=175.76 Aligned_cols=178 Identities=14% Similarity=0.126 Sum_probs=128.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.. ...+
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~------------------------~~~g------ 45 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQS-L-----PHTTLIGRHAKTITYY------------------------TVPH------ 45 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHH-C-----TTCEEEESSCEEEEEE------------------------SSTT------
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeccCcEEEE------------------------ecCC------
Confidence 38999999999999999999999 8 8999999997654310 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.. +..++.+..+++ +++|+||+|||+++++++++++++++++ +++|++++||++
T Consensus 46 --~~--------------------~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~ 100 (294)
T 3g17_A 46 --AP--------------------AQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHE---DTLIILAQNGYG 100 (294)
T ss_dssp --SC--------------------CEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGGHHHHEEE---EEEEEECCSSCC
T ss_pred --ee--------------------ccceecCchHhcCCCCCEEEEeCCccCHHHHHHHHHHhhCC---CCEEEEeccCcc
Confidence 00 122333444444 7899999999999999999999999987 789999999999
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
..+. .+. .+.++......+.+.||+++. . + +..+.. .+.+..+.++++|++.+|+++.++|+.+.+
T Consensus 101 ~~~~------~~~---~~v~~g~~~~~a~~~~pg~v~-~--~-~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~di~~~~ 166 (294)
T 3g17_A 101 QLEH------IPF---KNVCQAVVYISGQKKGDVVTH-F--R-DYQLRI-QDNALTRQFRDLVQDSQIDIVLEANIQQAI 166 (294)
T ss_dssp CGGG------CCC---SCEEECEEEEEEEEETTEEEE-E--E-EEEEEE-ECSHHHHHHHHHTTTSSCEEEEESSHHHHH
T ss_pred cHhh------CCC---CcEEEEEEEEEEEEcCCCEEE-E--C-CCEEec-CccHHHHHHHHHHHhCCCceEEChHHHHHH
Confidence 8621 000 011110011235678999873 2 2 222222 345678999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHH
Q 022050 282 VMGGLKNV-YAIGAGT 296 (303)
Q Consensus 282 ~~~~lkNv-~Ai~~G~ 296 (303)
|.|+++|+ ++ .+++
T Consensus 167 w~Kl~~N~~in-l~al 181 (294)
T 3g17_A 167 WYKLLVNLGIN-SITA 181 (294)
T ss_dssp HHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHH-HHHH
Confidence 99999999 56 4444
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=173.00 Aligned_cols=195 Identities=16% Similarity=0.166 Sum_probs=140.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++++++ ......
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~~~---- 53 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG-G-----NDVTLIDQWPAHIEAIRKNGL-------------------IADFNG---- 53 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHCE-------------------EEEETT----
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHHhCCE-------------------EEEeCC----
Confidence 58999999999999999999998 8 899999999887765432211 010000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH---hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA---VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a---~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+ .+. .++.++++ .++ ++++|+||++||++.++++++++.+++++ +++|++++||
T Consensus 54 ~-~~~------------------~~~~~~~~-~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~iv~~~~g 110 (316)
T 2ew2_A 54 E-EVV------------------ANLPIFSP-EEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITE---KTYVLCLLNG 110 (316)
T ss_dssp E-EEE------------------ECCCEECG-GGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCT---TCEEEECCSS
T ss_pred C-eeE------------------ecceeecc-hhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCC---CCEEEEecCC
Confidence 0 000 12334332 233 34899999999999999999999998887 7899999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEE
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
+... +.+.+.++... ...+.+.||+++.+...|.+..... +.+.+..+.++++|+..|++++
T Consensus 111 ~~~~-----------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~ 179 (316)
T 2ew2_A 111 LGHE-----------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPS 179 (316)
T ss_dssp SCTH-----------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEE
T ss_pred CCcH-----------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCcE
Confidence 8753 33555554210 0012478999887776666543332 2345678999999999999999
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHhhh
Q 022050 273 DNGDLVTHEVMGGLKNVYAIGAGTIYFL 300 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv~Ai~~G~~~gl 300 (303)
..+|+.+.+|.|+++|++..+.+.+.|.
T Consensus 180 ~~~d~~~~~~~Kl~~N~~~~~~~al~~~ 207 (316)
T 2ew2_A 180 YSSNVRYSIWRKACVNGTLNGLCTILDC 207 (316)
T ss_dssp ECTTHHHHHHHHHHHHTTHHHHHHHHTC
T ss_pred EchhHHHHHHHHHHHhhhHHHHHHHhCC
Confidence 9999999999999999988777666654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=168.89 Aligned_cols=190 Identities=14% Similarity=0.059 Sum_probs=133.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+ + | ++|++|+|+++++++++++++ ..... +
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~-g-----~~V~~~~r~~~~~~~l~~~G~-------------------~~~~~----~ 51 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-L-Y-----HDVTVVTRRQEQAAAIQSEGI-------------------RLYKG----G 51 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHHCE-------------------EEEET----T
T ss_pred CCEEEEECCCHHHHHHHHHHh-c-C-----CceEEEECCHHHHHHHHhCCc-------------------eEecC----C
Confidence 489999999999999999999 8 8 899999999877765443221 11100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
. .. + ..+..+. ++..++|+||+|||++++++++++++++ .+ ++ |++++||++.
T Consensus 52 ~-~~-~-----------------~~~~~~~---~~~~~~D~vilavK~~~~~~~l~~l~~~-~~---~~-ivs~~nGi~~ 104 (307)
T 3ego_A 52 E-EF-R-----------------ADCSADT---SINSDFDLLVVTVKQHQLQSVFSSLERI-GK---TN-ILFLQNGMGH 104 (307)
T ss_dssp E-EE-E-----------------ECCEEES---SCCSCCSEEEECCCGGGHHHHHHHTTSS-CC---CE-EEECCSSSHH
T ss_pred C-ee-c-----------------ccccccc---cccCCCCEEEEEeCHHHHHHHHHHhhcC-CC---Ce-EEEecCCccH
Confidence 0 00 0 0122221 2457899999999999999999999875 44 56 9999999987
Q ss_pred ccccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 203 ELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
. +.+.+++|... ...+.+.+|++..+.+.|...+.......+..+.+.++|...++++..++|
T Consensus 105 ~-----------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~d 173 (307)
T 3ego_A 105 I-----------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDRLNILFQHNHSDFPIYYETD 173 (307)
T ss_dssp H-----------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGGGTTTTSSCCTTSCEEECSC
T ss_pred H-----------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHHHHHHHHhhhCCCCcEechh
Confidence 5 45777776431 112456788887766655432222222245667788899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh
Q 022050 277 LVTHEVMGGLKNVYAIGAGTIYFL 300 (303)
Q Consensus 277 i~g~e~~~~lkNv~Ai~~G~~~gl 300 (303)
+.+..|.|.+.|+.--..+.+.+.
T Consensus 174 i~~~~W~Kl~~N~~~N~ltal~~~ 197 (307)
T 3ego_A 174 WYRLLTGKLIVNACINPLTALLQV 197 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcC
Confidence 999999999999855555544443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=151.62 Aligned_cols=173 Identities=13% Similarity=0.137 Sum_probs=130.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|+||+++|..|+++ | ++|++|+|+++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~-------------------------------------- 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIA-G-----HEVTYYGSKDQ-------------------------------------- 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCC--------------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH--------------------------------------
Confidence 358999999999999999999998 8 89999987631
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++++||+||++||++.++++++++.++++ +++++++++|++
T Consensus 54 -----------------------------------~~~~aD~vi~av~~~~~~~v~~~l~~~~~----~~~vi~~~~g~~ 94 (209)
T 2raf_A 54 -----------------------------------ATTLGEIVIMAVPYPALAALAKQYATQLK----GKIVVDITNPLN 94 (209)
T ss_dssp -----------------------------------CSSCCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCBC
T ss_pred -----------------------------------HhccCCEEEEcCCcHHHHHHHHHHHHhcC----CCEEEEECCCCC
Confidence 23578999999999999999999988775 479999999997
Q ss_pred -ccc--ccccccCCHHHHHHhHhCCCCccEE----EEeCCCcHHHHhcc-CceEEEE-eCChhhHHHHHHHhcCCCeEEE
Q 022050 202 -AEL--EAVPRIITPTQMINRATGVPIENIL----YLGGPNIASEIYNK-EYANARI-CGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 202 -~~~--~~~~~~~~~~~~i~~~l~~~~~~~~----v~~GP~~a~ev~~g-~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
.+. ...++...+.+.+++.++. .++. .+.+|+++.+...+ .+..+.. +.+.+..+.++++|+..|++++
T Consensus 95 ~~~~~~l~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~ 172 (209)
T 2raf_A 95 FDTWDDLVVPADSSAAQELQQQLPD--SQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVK 172 (209)
T ss_dssp TTTSSSBSSCTTCCHHHHHHHHCTT--SEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEE
T ss_pred ccccccccCCCCCcHHHHHHHHCCC--CcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceE
Confidence 320 0001233456778887752 2221 12388888766555 2333333 3455778999999999999998
Q ss_pred ecCChhHHHHHHHHHHHHHHHHHHHhhhcC
Q 022050 273 DNGDLVTHEVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
...| ++.+..+||++++++|+++++++
T Consensus 173 ~~~~---i~~a~~~K~i~~l~~~~~~~~g~ 199 (209)
T 2raf_A 173 DAGK---LKRARELEAMGFMQMTLAASEQI 199 (209)
T ss_dssp EEES---GGGHHHHHHHHHHHHHHHHTTSS
T ss_pred eCCC---HhHHHHhcchHHHHHHHHHHcCC
Confidence 8888 48899999999999999987765
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=168.05 Aligned_cols=196 Identities=18% Similarity=0.117 Sum_probs=146.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..+|+|||+|+||..+|..|+++ | ++|++||+++++++.++.. +++.|++++...
T Consensus 8 ~~~~~vIGlG~vG~~~A~~La~~-G-----~~V~~~D~~~~kv~~l~~g-----------------~~~~~epgl~~~-- 62 (446)
T 4a7p_A 8 SVRIAMIGTGYVGLVSGACFSDF-G-----HEVVCVDKDARKIELLHQN-----------------VMPIYEPGLDAL-- 62 (446)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHHTTT-----------------CCSSCCTTHHHH--
T ss_pred ceEEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHhcC-----------------CCCccCCCHHHH--
Confidence 46899999999999999999999 9 9999999999988875532 255666654211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHHHhhccCCCC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-----------~~~~vl~~l~~~l~~~~~~~ 191 (303)
+.+... ..++++++|+++++++||+||+|||.. +++++++.|.+++++ ++
T Consensus 63 ---------~~~~~~-------~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~---g~ 123 (446)
T 4a7p_A 63 ---------VASNVK-------AGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK---PS 123 (446)
T ss_dssp ---------HHHHHH-------TTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS---CC
T ss_pred ---------HHhhcc-------cCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC---CC
Confidence 100000 025889999999999999999998665 589999999999887 77
Q ss_pred EEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeC-ChhhHHHHHHHhcC
Q 022050 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRR 266 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~-~~~~~~~i~~lf~~ 266 (303)
+||.. +++.+. +...+.+.+.+..+. ..+.+.++|+++.+... +.+..++.+. +.+..+.++.+|+.
T Consensus 124 iVV~~-STv~pg-----tt~~l~~~l~e~~~~--~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~ 195 (446)
T 4a7p_A 124 VIVTK-STVPVG-----TGDEVERIIAEVAPN--SGAKVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRP 195 (446)
T ss_dssp EEEEC-SCCCTT-----HHHHHHHHHHHHSTT--SCCEEEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCS
T ss_pred EEEEe-CCCCch-----HHHHHHHHHHHhCCC--CCceEEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 77764 477776 345556666665432 34678999999987653 4555555554 46778999999975
Q ss_pred CCeE----EEecCChhHHHHHHHHHHHHH
Q 022050 267 PHFT----VWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 267 ~g~~----~~~~~Di~g~e~~~~lkNv~A 291 (303)
.++ ++...|+.+.|++|...|.+.
T Consensus 196 -~~~~~~~~~~~~d~~~aE~~Kl~~N~~~ 223 (446)
T 4a7p_A 196 -LSLNQSAPVLFTGRRTSELIKYAANAFL 223 (446)
T ss_dssp -CC-----CEEEECHHHHHHHHHHHHHHH
T ss_pred -HhcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 443 477889999999999999875
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-19 Score=160.60 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=135.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|++. | ++|++|+|++++++.+.. .+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~------------------------~g~------ 44 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAVE------------------------RQL------ 44 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH------------------------TTS------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHh------------------------CCC------
Confidence 7999999999999999999998 8 899999999876543210 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
...++++++++ +++|+||++||++.+.++++++.+++++ +++|+++ .++...
T Consensus 45 -----------------------~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~---~~~vv~~-~~~~~~ 96 (279)
T 2f1k_A 45 -----------------------VDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDV-ASVKTA 96 (279)
T ss_dssp -----------------------CSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEEC-CSCCHH
T ss_pred -----------------------CccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCC---CCEEEEC-CCCcHH
Confidence 11345677777 8999999999999999999999988877 7888876 333322
Q ss_pred cccccccCCHHHHHHhHhCC--CCccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 204 LEAVPRIITPTQMINRATGV--PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~--~~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
. . +.+.+.+.. +.+|+. ...||+++. ++..+.++.++.. .+.+..+.++++|+..|++++..+|
T Consensus 97 ~--------~-~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 97 I--------A-EPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp H--------H-HHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred H--------H-HHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 0 1 122233221 112222 345677765 4556655544442 3566789999999999999999999
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHhhhc
Q 022050 277 LVTHEVMGGLKNV-YAIGAGTIYFLV 301 (303)
Q Consensus 277 i~g~e~~~~lkNv-~Ai~~G~~~gl~ 301 (303)
..+.+|+++++|. .+++.+++++++
T Consensus 168 ~~~~~~~~~~~~~p~~i~~al~~~~~ 193 (279)
T 2f1k_A 168 ADHDQAVAWISHLPVMVSAALIQACA 193 (279)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999996 899999998875
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=160.48 Aligned_cols=199 Identities=16% Similarity=0.129 Sum_probs=138.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCC-eeEEEEecCCchhhhhhh-hhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDK-VLIRIWRRPGRSVDRATA-EHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~-~~V~l~~r~~~~~~~~~~-~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+|||+|||+|+||+++|..|+++ +....+ ++|++|+| +++++++++ .++ ......
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~-~~~~~g~~~V~~~~r-~~~~~~l~~~~g~-------------------~~~~~~- 64 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALR-AAATDGLLEVSWIAR-GAHLEAIRAAGGL-------------------RVVTPS- 64 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHH-HHHTTSSEEEEEECC-HHHHHHHHHHTSE-------------------EEECSS-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-ccccCCCCCEEEEEc-HHHHHHHHhcCCe-------------------EEEeCC-
Confidence 348999999999999999999875 111102 68999999 666655432 110 111000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
++ .. . .++.++++.+ +++++|+||++||++.++++++++.+++.+ +++||+++||
T Consensus 65 --~~-~~------------~------~~~~~~~~~~-~~~~~D~vil~vk~~~~~~v~~~i~~~l~~---~~~iv~~~nG 119 (317)
T 2qyt_A 65 --RD-FL------------A------RPTCVTDNPA-EVGTVDYILFCTKDYDMERGVAEIRPMIGQ---NTKILPLLNG 119 (317)
T ss_dssp --CE-EE------------E------CCSEEESCHH-HHCCEEEEEECCSSSCHHHHHHHHGGGEEE---EEEEEECSCS
T ss_pred --CC-eE------------E------ecceEecCcc-ccCCCCEEEEecCcccHHHHHHHHHhhcCC---CCEEEEccCC
Confidence 00 00 0 1356666664 468999999999999999999999998887 6889999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCC------ccEEEEeCCCcHHHHhccCceEEEEeC-----ChhhHHHHHHHhcCCC
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPH 268 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~------~~~~v~~GP~~a~ev~~g~~~~~~~~~-----~~~~~~~i~~lf~~~g 268 (303)
+... +.+.+.++... ...+.+.+|+++.+...+.. .+++. +.+.. .++++|+..+
T Consensus 120 ~~~~-----------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~--~~ig~~~~~~~~~~~-~~~~ll~~~g 185 (317)
T 2qyt_A 120 ADIA-----------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL--FYFGSGLPEQTDDEV-RLAELLTAAG 185 (317)
T ss_dssp SSHH-----------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE--EEEECCSSSCCHHHH-HHHHHHHHTT
T ss_pred CCcH-----------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce--EEEcCCCCCCcCHHH-HHHHHHHHCC
Confidence 8753 44666665321 11245677877655444422 21321 23455 8899999999
Q ss_pred eEEEecCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 022050 269 FTVWDNGDLVTHEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 269 ~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
++++..+|+.+.+|.|+++|+...+.+.+.|..
T Consensus 186 ~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~ 218 (317)
T 2qyt_A 186 IRAYNPTDIDWYIMKKFMMISVTATATAYFDKP 218 (317)
T ss_dssp CCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCC
Confidence 999999999999999999999988877776653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=169.23 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=143.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|+||+.+|..|+++ | ++|++||+++++++.+++.+ ++.+.+++..
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~-G-----~~V~~~d~~~~~v~~l~~~~-----------------~~i~e~gl~~-- 61 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI-G-----HDVFCLDVDQAKIDILNNGG-----------------VPIHEPGLKE-- 61 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTTC-----------------CSSCCTTHHH--
T ss_pred CCceEEEECcCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHCCC-----------------CCcCCCCHHH--
Confidence 459999999999999999999999 9 99999999999887755321 2333333210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------hhHHHHHHHHHHHhhccCCCC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------~~~~~vl~~l~~~l~~~~~~~ 191 (303)
.+.+... ..++.+++|+++++++||+||+|||. .++++++++|.+++++ ++
T Consensus 62 ---------~l~~~~~-------~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---~~ 122 (478)
T 2y0c_A 62 ---------VIARNRS-------AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG---FK 122 (478)
T ss_dssp ---------HHHHHHH-------TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CE
T ss_pred ---------HHHHhcc-------cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC---CC
Confidence 0000000 02588999998888999999999998 8999999999999987 67
Q ss_pred EEEEeeccCccccccccccCCHHHHHHhHhCCCC--ccEEEEeCCCcHHHHhc----cCceEEEEe-CCh----hhHHHH
Q 022050 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYN----KEYANARIC-GAE----KWRKPL 260 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~----~~~~~i 260 (303)
+|+.. +++.+. +...+.+.+.+.++.+. ..+.+.++|.++.+... +.+..++.+ .+. +..+.+
T Consensus 123 iVV~~-STv~~g-----t~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~ 196 (478)
T 2y0c_A 123 VIVDK-STVPVG-----TAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELM 196 (478)
T ss_dssp EEEEC-SCCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHH
T ss_pred EEEEe-CCcCCC-----chHHHHHHHHHHhcCCCCCccEEEEEChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHH
Confidence 76654 477665 23335555655432111 23578999999876543 444445554 334 567889
Q ss_pred HHHhcCCCe---EEEecCChhHHHHHHHHHHHHH
Q 022050 261 AKFLRRPHF---TVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 261 ~~lf~~~g~---~~~~~~Di~g~e~~~~lkNv~A 291 (303)
+++|+. .+ .++...|+.+.||+|.+-|.+.
T Consensus 197 ~~l~~~-~~~~~~~~~~~di~~ae~~Kl~~N~~~ 229 (478)
T 2y0c_A 197 KKLYAP-FNRNHERTLYMDVRSAEFTKYAANAML 229 (478)
T ss_dssp HHHTGG-GGSSSCCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhccCCeEEcCCHHHHHHHHHHHHHHH
Confidence 999985 55 3788899999999999999874
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=153.23 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=122.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||++++..|+++ | +.+ .+|++|+|++++++++.+
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-g-~~~-~~V~v~dr~~~~~~~l~~-------------------------------- 47 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-G-YDP-NRICVTNRSLDKLDFFKE-------------------------------- 47 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-T-CCG-GGEEEECSSSHHHHHHHH--------------------------------
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-C-CCC-CeEEEEeCCHHHHHHHHH--------------------------------
Confidence 48999999999999999999998 8 111 289999999987653210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
. .++.+++++.++++++|+||+|||++.+++++++|.++ +++ +++|+|+++|+.
T Consensus 48 --~--------------------~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~---~~iiiS~~agi~ 102 (280)
T 3tri_A 48 --K--------------------CGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSET---KILVISLAVGVT 102 (280)
T ss_dssp --T--------------------TCCEEESCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTT---TCEEEECCTTCC
T ss_pred --H--------------------cCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCC---CeEEEEecCCCC
Confidence 0 03556778888899999999999999999999999998 887 679999999998
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
.+ .+.+.++.+. + .++.+||++..+..|.... +.+ .+++..+.+..+|+.-|..+++.
T Consensus 103 ~~------------~l~~~l~~~~-~-vvr~mPn~p~~v~~g~~~l-~~~~~~~~~~~~~v~~l~~~iG~~~~v~ 162 (280)
T 3tri_A 103 TP------------LIEKWLGKAS-R-IVRAMPNTPSSVRAGATGL-FANETVDKDQKNLAESIMRAVGLVIWVS 162 (280)
T ss_dssp HH------------HHHHHHTCCS-S-EEEEECCGGGGGTCEEEEE-ECCTTSCHHHHHHHHHHHGGGEEEEECS
T ss_pred HH------------HHHHHcCCCC-e-EEEEecCChHHhcCccEEE-EeCCCCCHHHHHHHHHHHHHCCCeEEEC
Confidence 64 4777776432 2 5778999999887774322 222 34567899999999999877763
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=164.47 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=142.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||..+|..|+++ | ++|++||+++++++.+++. .++.+.+++..
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-G-----~~V~~~D~~~~~v~~l~~g-----------------~~~i~e~gl~~---- 55 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-G-----ANVRCIDTDRNKIEQLNSG-----------------TIPIYEPGLEK---- 55 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHT-----------------CSCCCSTTHHH----
T ss_pred CEEEEECcCHHHHHHHHHHHhc-C-----CEEEEEECCHHHHHHHHcC-----------------CCcccCCCHHH----
Confidence 8999999999999999999999 9 9999999999888765421 13344443310
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
++.+... ..++++++|+++++++||+||+|||+. ++++++++|.+++++ +++|
T Consensus 56 -------~l~~~~~-------~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---g~iV 118 (450)
T 3gg2_A 56 -------MIARNVK-------AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR---YILI 118 (450)
T ss_dssp -------HHHHHHH-------TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CEEE
T ss_pred -------HHHhhcc-------cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC---CCEE
Confidence 0000000 025889999999899999999999987 899999999999987 6766
Q ss_pred EEeeccCccccccccccCCHHHHHHhHhCCC--CccEEEEeCCCcHHHHhc----cCceEEEEe-CChhhHHHHHHHhcC
Q 022050 194 ISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKFLRR 266 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~--~~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~~~~~~i~~lf~~ 266 (303)
|..+ ++.+. +...+.+.+.+..+.. ...+.+.++|+++.+... ..+..++++ .+.+..+.++.+|+.
T Consensus 119 V~~S-Tv~pg-----t~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~ 192 (450)
T 3gg2_A 119 VTKS-TVPVG-----SYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKP 192 (450)
T ss_dssp EECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEee-eCCCc-----chHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 6554 56665 3344556665543211 123678999999887554 445445554 456788999999984
Q ss_pred CCe--EEEecCChhHHHHHHHHHHHHH
Q 022050 267 PHF--TVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 267 ~g~--~~~~~~Di~g~e~~~~lkNv~A 291 (303)
-+- ..+...|+.+.|+.|..-|.+.
T Consensus 193 ~~~~~~~~~~~d~~~aE~~Kl~~N~~~ 219 (450)
T 3gg2_A 193 MLLNNFRVLFMDIASAEMTKYAANAML 219 (450)
T ss_dssp TCCSCCCEEEECHHHHHHHHHHHHHHH
T ss_pred HhcCCCeEEecCHHHHHHHHHHHHHHH
Confidence 332 1456789999999999999864
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-18 Score=156.29 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=127.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++..+ ..+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~l~~~~---------------------~~~~------ 47 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLVE---------------------TDGS------ 47 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEEC---------------------TTSC------
T ss_pred CeEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCccceeeEEEEc---------------------CCCc------
Confidence 7999999999999999999999 8 89999999987654321100 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.+. ..+. .++. ++++++|+||++||++.++++++++.+++++ +++|++++||+...
T Consensus 48 -~~~------------------~~~~-~~~~-~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~vv~~~~g~~~~ 103 (291)
T 1ks9_A 48 -IFN------------------ESLT-ANDP-DFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (291)
T ss_dssp -EEE------------------EEEE-ESCH-HHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -eee------------------eeee-ecCc-cccCCCCEEEEEecHHhHHHHHHHHHhhCCC---CCEEEEecCCCCcH
Confidence 000 0122 2343 5678999999999999999999999998887 78999999998653
Q ss_pred cccccccCCHHHHHHhHhCC--CC--ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 204 LEAVPRIITPTQMINRATGV--PI--ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~--~~--~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
. .+.+.++. .. ...+.+.|| .+.+...|...+.....+.+..+.++++|+..|++++..+|+.+
T Consensus 104 ~-----------~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~ 171 (291)
T 1ks9_A 104 E-----------ELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRA 171 (291)
T ss_dssp G-----------GGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHH
T ss_pred H-----------HHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHH
Confidence 1 23333332 00 113468899 66666666422212133445678899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 022050 280 HEVMGGLKNVYA 291 (303)
Q Consensus 280 ~e~~~~lkNv~A 291 (303)
..|.+.+-|..-
T Consensus 172 ~~~~Kl~~n~~~ 183 (291)
T 1ks9_A 172 ELWRKLAVNCVI 183 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHeeeeee
Confidence 999999888753
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=146.02 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=120.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||.+++..|+++ |++.+ .+|++|+|++++++++.+ ..
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~-g~~~~-~~V~~~~r~~~~~~~~~~-------------------------~~----- 49 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK-NIVSS-NQIICSDLNTANLKNASE-------------------------KY----- 49 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCHHHHHHHHH-------------------------HH-----
T ss_pred CCeEEEECccHHHHHHHHHHHhC-CCCCC-CeEEEEeCCHHHHHHHHH-------------------------Hh-----
Confidence 37999999999999999999998 82111 299999999876653210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
++..++++.++++++|+||++||++.++++++++.+++++ +++|+|.++|+..
T Consensus 50 ------------------------g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~l~~~l~~---~~~vvs~~~gi~~ 102 (247)
T 3gt0_A 50 ------------------------GLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKN---DAIIVTIAAGKSI 102 (247)
T ss_dssp ------------------------CCEECSCHHHHHHHCSEEEECSCTTTHHHHC---CCSSCT---TCEEEECSCCSCH
T ss_pred ------------------------CCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEecCCCCH
Confidence 3445678888889999999999999999999999988877 7899999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
+ .+++.++.+ ...+..+|+++..+..|... ++.. .+.+..+.++.+|+..|..+++.++..
T Consensus 103 ~------------~l~~~~~~~--~~~v~~~p~~p~~~~~g~~~-~~~~~~~~~~~~~~~~~l~~~~G~~~~~~e~~~ 165 (247)
T 3gt0_A 103 E------------STENAFNKK--VKVVRVMPNTPALVGEGMSA-LCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKLM 165 (247)
T ss_dssp H------------HHHHHHCSC--CEEEEEECCGGGGGTCEEEE-EEECTTCCHHHHHHHHHHHGGGEEEEECCGGGH
T ss_pred H------------HHHHHhCCC--CcEEEEeCChHHHHcCceEE-EEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHc
Confidence 4 466777542 23567899999887776432 2222 456678999999999998777765543
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-17 Score=150.16 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=122.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|||+|+||+++|..|+++ |.+.. ++|++|+|+++ ++++++ .
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~-G~~~~-~~V~v~~r~~~~~~~~~l~--------------------------~---- 69 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA-GVLAA-HKIMASSPDMDLATVSALR--------------------------K---- 69 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCTTSHHHHHHH--------------------------H----
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCCc-ceEEEECCCccHHHHHHHH--------------------------H----
Confidence 37999999999999999999998 73222 68999999975 443211 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+.+++++.++++++|+||++||++.++++++++.+.+.+ +++||++++|+
T Consensus 70 -------------------------~G~~~~~~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~---~~ivvs~s~gi 121 (322)
T 2izz_A 70 -------------------------MGVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIED---RHIVVSCAAGV 121 (322)
T ss_dssp -------------------------HTCEEESCHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECCTTC
T ss_pred -------------------------cCCEEeCChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEeCCCC
Confidence 02445667878888999999999999999999999988876 78999999998
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.... +++.+.+.++. . ..+..+|+++.++..+. ...+.+. +.+..+.++++|+..|+.++..+|+.
T Consensus 122 ~~~~--------l~~~l~~~~~~--~-~vv~~~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~ 189 (322)
T 2izz_A 122 TISS--------IEKKLSAFRPA--P-RVIRCMTNTPVVVREGA-TVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLI 189 (322)
T ss_dssp CHHH--------HHHHHHTTSSC--C-EEEEEECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGH
T ss_pred CHHH--------HHHHHhhcCCC--C-eEEEEeCCcHHHHcCCe-EEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHH
Confidence 7641 23334443332 1 35778999998887764 2222222 25678899999999999998887765
Q ss_pred HH
Q 022050 279 TH 280 (303)
Q Consensus 279 g~ 280 (303)
..
T Consensus 190 ~~ 191 (322)
T 2izz_A 190 DA 191 (322)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=137.15 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=123.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEE-EecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|+||.++|..|+++ | ++|++ |+|++++++++..+ .
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~-g-----~~V~~v~~r~~~~~~~l~~~-------------------------~---- 67 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA-Q-----IPAIIANSRGPASLSSVTDR-------------------------F---- 67 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT-T-----CCEEEECTTCGGGGHHHHHH-------------------------H----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCCHHHHHHHHHH-------------------------h----
Confidence 58999999999999999999998 8 89999 99998876542210 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+..+.+..++++++|+||++||++.++++++++.+ ++ +++|+++++|+.
T Consensus 68 -------------------------g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~-~~----~~ivi~~~~g~~ 117 (220)
T 4huj_A 68 -------------------------GASVKAVELKDALQADVVILAVPYDSIADIVTQVSD-WG----GQIVVDASNAID 117 (220)
T ss_dssp -------------------------TTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCSC-CT----TCEEEECCCCBC
T ss_pred -------------------------CCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhhc-cC----CCEEEEcCCCCC
Confidence 011222334567899999999999999999999876 43 679999999996
Q ss_pred ccccccc--ccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc-cC-----ceEEEE-eCChhhHHHHHHHhcCCCeEEE
Q 022050 202 AELEAVP--RIITPTQMINRATGVPIENILYLGGPNIASEIYN-KE-----YANARI-CGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 202 ~~~~~~~--~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~-g~-----~~~~~~-~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
......+ +..+..+.+++.++. ..++...|+++..+.. +. +..++. +.+.+..+.++++|+..|++++
T Consensus 118 ~~~~~~~~~~~~~~~~~l~~~l~~---~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~~ 194 (220)
T 4huj_A 118 FPAFKPRDLGGRLSTEIVSELVPG---AKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVAELISSLGFAPV 194 (220)
T ss_dssp TTTCCBCCCTTCCHHHHHHHHSTT---CEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred cccccccccCCCcHHHHHHHHCCC---CCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCeE
Confidence 1100000 233466788888863 2457788888777665 22 222333 4566788999999999999999
Q ss_pred ecCChhHH
Q 022050 273 DNGDLVTH 280 (303)
Q Consensus 273 ~~~Di~g~ 280 (303)
...++...
T Consensus 195 ~~G~l~~a 202 (220)
T 4huj_A 195 DLGTLAAS 202 (220)
T ss_dssp ECCSHHHH
T ss_pred eeCChhhc
Confidence 88887544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=142.23 Aligned_cols=181 Identities=16% Similarity=0.099 Sum_probs=122.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
||||+|||+|+||+++|..|++. | + +|++|+|++++++.+.. . +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~-g-----~~~~V~~~d~~~~~~~~~~~-----------------------~-g~--- 47 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAVD-----------------------L-GI--- 47 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHHH-----------------------T-TS---
T ss_pred CcEEEEEecCHHHHHHHHHHHhc-C-----CCcEEEEEeCCHHHHHHHHH-----------------------C-CC---
Confidence 47999999999999999999998 8 6 89999999876543110 0 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~-~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....++++.++++ ++|+||++||++...++++++.+++++ +++|+.++++
T Consensus 48 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~---~~iv~~~~~~ 98 (281)
T 2g5c_A 48 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSV 98 (281)
T ss_dssp --------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSC
T ss_pred --------------------------cccccCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 1123466777788 999999999999999999999988877 6766655433
Q ss_pred CccccccccccCCHHHHHHhHhCC---CCccEE--EEeCCCcHH-HHhccCceEEEE--eCChhhHHHHHHHhcCCCeEE
Q 022050 200 VEAELEAVPRIITPTQMINRATGV---PIENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTV 271 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~--v~~GP~~a~-ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~ 271 (303)
... ..+.+.+.++. +.+|+. ..+||.++. ++..+.++.++. +.+.+..+.++++|+..|+++
T Consensus 99 -~~~---------~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~ 168 (281)
T 2g5c_A 99 -KGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV 168 (281)
T ss_dssp -CTH---------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEE
T ss_pred -cHH---------HHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 221 11223343321 112221 234666654 345565444333 345567899999999999999
Q ss_pred EecCChhH---HHHHHHHHHHHHHHHH
Q 022050 272 WDNGDLVT---HEVMGGLKNVYAIGAG 295 (303)
Q Consensus 272 ~~~~Di~g---~e~~~~lkNv~Ai~~G 295 (303)
+..++... +.+++.++|+++++.+
T Consensus 169 ~~~~~~~~d~~~~~~~~~~~~~a~~~~ 195 (281)
T 2g5c_A 169 EYMSPELHDYVFGVVSHLPHAVAFALV 195 (281)
T ss_dssp EECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776 5666667777655443
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-15 Score=134.18 Aligned_cols=194 Identities=12% Similarity=0.108 Sum_probs=124.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch--hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS--VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~--~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
-..|||+|||+|+||+++|..|+++ | ++|++|+|++++ .+....+ +. +. ....+.
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~~-G-----~~V~~~~r~~~~~~~~~~~~~-----~~-----------~~-~~~~~~ 73 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALADL-G-----HEVTIGTRDPKATLARAEPDA-----MG-----------AP-PFSQWL 73 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHTCC-----------------------C-CHHHHG
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhhhh-----hc-----------ch-hhhHHH
Confidence 3458999999999999999999999 8 899999999875 2111000 00 00 000000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHH-HHHhhccCCCCEEEEee
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLA 197 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l-~~~l~~~~~~~iivs~~ 197 (303)
+ .+ ... ..+++.+++++||+||++||++...+++.++ .+++ + +++||+++
T Consensus 74 ----~-~~-------------------~~~-~~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~---g~ivi~~s 124 (245)
T 3dtt_A 74 ----P-EH-------------------PHV-HLAAFADVAAGAELVVNATEGASSIAALTAAGAENL-A---GKILVDIA 124 (245)
T ss_dssp ----G-GS-------------------TTC-EEEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-T---TSEEEECC
T ss_pred ----h-hc-------------------Cce-eccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-C---CCEEEECC
Confidence 0 00 112 3456778889999999999999999999998 7777 4 78999999
Q ss_pred ccCccc-----cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccC------ceEEEEe-CChhhHHHHHHHhc
Q 022050 198 KGVEAE-----LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE------YANARIC-GAEKWRKPLAKFLR 265 (303)
Q Consensus 198 nGi~~~-----~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~------~~~~~~~-~~~~~~~~i~~lf~ 265 (303)
||+... +...++.....+.+++.++. . .++...|+....+..+. +..++++ .+.+..+.++.+|+
T Consensus 125 ~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~--~-~vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~ 201 (245)
T 3dtt_A 125 NPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE--A-KVVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLK 201 (245)
T ss_dssp CCEECTTCSSCEESSCSSCCHHHHHHHHSTT--S-EEEECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCcCCccccccCCCCccHHHHHHHHCCC--C-eEEEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHH
Confidence 876321 00112345677888888863 2 34556666655554332 2223344 45678899999999
Q ss_pred CCCeE-EEecCChhHHHHHHHHHHH
Q 022050 266 RPHFT-VWDNGDLVTHEVMGGLKNV 289 (303)
Q Consensus 266 ~~g~~-~~~~~Di~g~e~~~~lkNv 289 (303)
..+++ ++...++-.....+.+-|.
T Consensus 202 ~~g~~~~~~~G~~g~a~~~k~~~~~ 226 (245)
T 3dtt_A 202 SLGHQDVIDLGDITTARGAEMLLPV 226 (245)
T ss_dssp HTTCCCEEEEESGGGHHHHHTTHHH
T ss_pred HcCCCceeccCcHHHHHHhhhhHHH
Confidence 99985 4555555444444444443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=146.81 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=140.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc----hhhhhhhhhHHHHHhhhhhHHHHhhhhcc--cc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR----SVDRATAEHLFEVINSREDVLRRLIRRCA--YL 114 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~~~--~l 114 (303)
.+|||+|||+|.||..+|..|+++.| + +|++||++++ +++.++.. .++. +.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G-----~~~V~~~D~~~~~~~~kv~~l~~g-----------------~~~i~~~e 74 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPC-----FEKVLGFQRNSKSSGYKIEMLNRG-----------------ESPLKGEE 74 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTT-----CCEEEEECCCCTTTTTHHHHHTTT-----------------CCCSSCCG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CCeEEEEECChhHhHHHHHHHHhc-----------------CCCccccC
Confidence 56899999999999999999998525 8 9999999999 77665421 1222 33
Q ss_pred hhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh------------HHHHHHHHHH
Q 022050 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISR 182 (303)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~------------~~~vl~~l~~ 182 (303)
+++.. ++.++.. ..++.+++| .+++++||+||++||... +..+.+.|.+
T Consensus 75 ~gl~~-----------l~~~~~~-------~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~ 135 (478)
T 3g79_A 75 PGLEE-----------LIGKVVK-------AGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK 135 (478)
T ss_dssp GGHHH-----------HHHHHHH-------TTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH
T ss_pred CCHHH-----------HHHhhcc-------cCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh
Confidence 33210 0000000 026888988 568899999999998763 6778889999
Q ss_pred HhhccCCCCEEEEeeccCccccccccccCCHHH-HHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhh
Q 022050 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQ-MINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKW 256 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~-~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~ 256 (303)
++++ +++|| ..+++.+. +...+.+ ++++..|.. ...+.++++|.+..+... ..+..++.+.+.+.
T Consensus 136 ~l~~---g~iVV-~~STv~pg-----tt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~ 206 (478)
T 3g79_A 136 YLKP---GMLVV-LESTITPG-----TTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEAS 206 (478)
T ss_dssp HCCT---TCEEE-ECSCCCTT-----TTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHH
T ss_pred hcCC---CcEEE-EeCCCChH-----HHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHH
Confidence 9887 66655 66688886 4566665 443555531 124678999998765432 12334555677777
Q ss_pred HHHHHHHhcCC-CeEEEecCChhHHHHHHHHHHHH
Q 022050 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 257 ~~~i~~lf~~~-g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++.+|+.- +..++...|+...|++|.+.|.+
T Consensus 207 ~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~ 241 (478)
T 3g79_A 207 TKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTF 241 (478)
T ss_dssp HHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHH
Confidence 89999999876 56677778999999999999987
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=134.36 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=116.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ |++.+ ++|++|+|++++ .
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~~-~~v~~~~~~~~~-~------------------------------------ 44 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-NIIKK-ENLFYYGPSKKN-T------------------------------------ 44 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-TSSCG-GGEEEECSSCCS-S------------------------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCCCC-CeEEEEeCCccc-C------------------------------------
Confidence 48999999999999999999998 72221 589999998752 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+..++++.++++++|+||++||++.++++++++.+++ + ++++++.++|+..
T Consensus 45 ------------------------g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l-~---~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 45 ------------------------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYL-S---SKLLISICGGLNI 96 (262)
T ss_dssp ------------------------SSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHSGGGC-T---TCEEEECCSSCCH
T ss_pred ------------------------ceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHHhc-C---CCEEEEECCCCCH
Confidence 13344567777889999999999999999999998887 4 5789999999876
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
+ .+.+.++.. .+ .+..+|+++.....| .+.++... +.+..+.++++|+..|..++..++..
T Consensus 97 ~------------~l~~~~~~~-~~-~v~~~p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~~~ 159 (262)
T 2rcy_A 97 G------------KLEEMVGSE-NK-IVWVMPNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKDM 159 (262)
T ss_dssp H------------HHHHHHCTT-SE-EEEEECCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGGGH
T ss_pred H------------HHHHHhCCC-Cc-EEEECCChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHc
Confidence 4 366667542 12 356789999888777 44333332 45678999999999998556666643
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=150.40 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=122.8
Q ss_pred CceEEEECCChHHHHHHHHHHH-hcCCCCCCeeEEEEe---cCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWR---RPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~-~~G~~~~~~~V~l~~---r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+|||+|||+|+||+++|..|++ + | ++|++|+ |++++++++ ++.... .-+..+..+.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~-G-----~~V~~~~~~~r~~~~~~~~--------~~~~g~-----~~~~~~~~~~- 61 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD-G-----VEVRVLTLFADEAERWTKA--------LGADEL-----TVIVNEKDGT- 61 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST-T-----EEEEEECCSTTHHHHHHHH--------HTTSCE-----EEEEECSSSC-
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-C-----CEEEEEeCCCCcHHHHHHH--------Hhhccc-----eeeeecCCCc-
Confidence 4899999999999999999987 7 7 9999999 766555431 111000 0000000000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeE-EecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLK-VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
...+ ...+. +++|++++++++|+||+|||++.+++++++|.+++++ +++|++++
T Consensus 62 ----~~~~------------------~~~~~~~~~~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~---~~ivv~~~ 116 (404)
T 3c7a_A 62 ----QTEV------------------KSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQD---SALIVGLP 116 (404)
T ss_dssp ----EEEE------------------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCT---TCEEEETT
T ss_pred ----ccee------------------eccceEEeCCHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCC---CcEEEEcC
Confidence 0000 01233 7788888889999999999999999999999999887 78888854
Q ss_pred --ccCccccccccccCCHHHHHHhH-----h-CCCCcc-EEEEeCCCcHHHHhccCceE--EEE-e--C-ChhhHHHHHH
Q 022050 198 --KGVEAELEAVPRIITPTQMINRA-----T-GVPIEN-ILYLGGPNIASEIYNKEYAN--ARI-C--G-AEKWRKPLAK 262 (303)
Q Consensus 198 --nGi~~~~~~~~~~~~~~~~i~~~-----l-~~~~~~-~~v~~GP~~a~ev~~g~~~~--~~~-~--~-~~~~~~~i~~ 262 (303)
+|+... ..+.+.+. + +....+ .+.+.||+++.++..+.... ... . . .....+.+++
T Consensus 117 ~~~G~~~~---------~~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 187 (404)
T 3c7a_A 117 SQAGFEFQ---------CRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQML 187 (404)
T ss_dssp CCTTHHHH---------HHHHHGGGGGTSEEEEESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHH
T ss_pred CCccHHHH---------HHHHHHhcCCCeEEEEecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHH
Confidence 443322 01223322 1 100122 35668899655554332111 112 2 1 1234455666
Q ss_pred HhcCCCeEEEecCChhHHHHHHHHHHHHHHHHHHHhh
Q 022050 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGTIYF 299 (303)
Q Consensus 263 lf~~~g~~~~~~~Di~g~e~~~~lkNv~Ai~~G~~~g 299 (303)
++.++. +..++|+++++|.+ |+++.+.|++.+
T Consensus 188 ~~~~~~--~~~~~di~~~~l~~---N~~~~~~~~l~~ 219 (404)
T 3c7a_A 188 HGAEPV--FRLAKHFLEMLIMS---YSFVHPAILFGR 219 (404)
T ss_dssp HCSSSE--EEECSCHHHHHHTT---CTTHHHHHHHHH
T ss_pred hCCCCc--eeEcCCEeeeeecC---CceeccHHHHHH
Confidence 664333 44689999999996 999999888843
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.9e-15 Score=143.49 Aligned_cols=201 Identities=16% Similarity=0.102 Sum_probs=134.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+.+|..|+++ | ++|++|++++++++.++..+ .+.+.+++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~-G-----~~V~~~d~~~~~~~~l~~~~-----------------~~i~e~~l~----- 52 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQGK-----------------SPIVEPGLE----- 52 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTTC-----------------CSSCCTTHH-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHhCCC-----------------CCcCCCCHH-----
Confidence 7999999999999999999999 8 89999999998877654321 122333221
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------HHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------TKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----------~~~vl~~l~~~l~~~~~~~ii 193 (303)
+.+..+.. ..++.+++|+++++++||+||+|||... +++++++|.+++++...+++|
T Consensus 53 ------~~~~~~~~-------~g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iV 119 (436)
T 1mv8_A 53 ------ALLQQGRQ-------TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (436)
T ss_dssp ------HHHHHHHH-------TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ------HHHHhhcc-------cCceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEE
Confidence 00000000 0147888999888899999999998765 899999999988740002555
Q ss_pred EEeeccCccccccccccCCHHHHHHhHhCCCC-ccEEEEeCCCcHHHHhc----cCceEEEEe-CChhhHHHHHHHhcCC
Q 022050 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKFLRRP 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~-~~~~v~~GP~~a~ev~~----g~~~~~~~~-~~~~~~~~i~~lf~~~ 267 (303)
|.. +++.+.+ +...+.+.+.+.++... ..+.+..+|.+..+... ..+..++.+ .+.+..+.++++|+..
T Consensus 120 V~~-Stv~~g~----t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~ 194 (436)
T 1mv8_A 120 VVR-STVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (436)
T ss_dssp EEC-SCCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred EEe-CCcCCCc----hHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhcc
Confidence 543 3444431 02334455555434211 12456788888664322 223234444 3466778899999988
Q ss_pred CeEEEecCChhHHHHHHHHHHHHH
Q 022050 268 HFTVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 268 g~~~~~~~Di~g~e~~~~lkNv~A 291 (303)
+.+++. .|+...||.|.+-|.+.
T Consensus 195 ~~~v~~-~~~~~ae~~Kl~~N~~~ 217 (436)
T 1mv8_A 195 DAPIIR-KTVEVAEMIKYTCNVWH 217 (436)
T ss_dssp SSCEEE-EEHHHHHHHHHHHHHHH
T ss_pred CCCEEc-CCHHHHHHHHHHHHHHH
Confidence 887776 88999999999999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=142.32 Aligned_cols=161 Identities=18% Similarity=0.224 Sum_probs=113.4
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
....||+|||+|.||+.||..+|.+ | ++|++||++++.+++... .+... +.+..+... ++.
T Consensus 4 p~~~~VaViGaG~MG~giA~~~a~~-G-----~~V~l~D~~~~~l~~~~~-----~i~~~---l~~~~~~g~-~~~---- 64 (319)
T 3ado_A 4 PAAGDVLIVGSGLVGRSWAMLFASG-G-----FRVKLYDIEPRQITGALE-----NIRKE---MKSLQQSGS-LKG---- 64 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH-----HHHHH---HHHHHHTTC-CCS----
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-----HHHHH---HHHHHHcCC-CCC----
Confidence 3457999999999999999999999 9 899999999987765321 11111 111111110 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
...+++ .+..+..++|+.+++++||+||+|||+. .+++++++|..++++ ++++.|+|+
T Consensus 65 ----~~~~~~-------------~l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~---~aIlaSNTS 124 (319)
T 3ado_A 65 ----SLSAEE-------------QLSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDD---RVVLSSSSS 124 (319)
T ss_dssp ----SSCHHH-------------HHHTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCS---SSEEEECCS
T ss_pred ----ccCHHH-------------HHhhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhh---cceeehhhh
Confidence 000000 1136888999999999999999999997 589999999999998 899999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
++.++.+ ......|++++.-||..|.+ -+.++.||.|..++.
T Consensus 125 sl~is~i-a~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~Ts~~~~ 169 (319)
T 3ado_A 125 CLLPSKL-FTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATV 169 (319)
T ss_dssp SCCHHHH-HTTCTTGGGEEEEEECSSTTTCCEEEEEECTTCCHHHH
T ss_pred hccchhh-hhhccCCCcEEEecCCCCccccchHHhcCCCCCcHHHH
Confidence 9998643 22345677777777655532 257888888877654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=137.35 Aligned_cols=184 Identities=15% Similarity=0.114 Sum_probs=123.5
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....+|||+|||+|.||..+|..|++. | ++|++|+|++++++++.+
T Consensus 27 ~~~~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~l~~---------------------------- 72 (320)
T 4dll_A 27 SDPYARKITFLGTGSMGLPMARRLCEA-G-----YALQVWNRTPARAASLAA---------------------------- 72 (320)
T ss_dssp --CCCSEEEEECCTTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHT----------------------------
T ss_pred cccCCCEEEEECccHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH----------------------------
Confidence 344568999999999999999999999 8 899999999876543210
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHH--HHHHHhhccCCCCEEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE--EISRYWKERITVPVIIS 195 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl~--~l~~~l~~~~~~~iivs 195 (303)
..+..+++++++++++|+||++||. ..+++++. ++.+.+.+ +++||.
T Consensus 73 ---------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~---~~~vi~ 122 (320)
T 4dll_A 73 ---------------------------LGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKP---GSLFLD 122 (320)
T ss_dssp ---------------------------TTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCT---TCEEEE
T ss_pred ---------------------------CCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCC---CCEEEe
Confidence 0355678898999999999999996 57888887 77777776 778777
Q ss_pred eeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH--hccCceEEEEeCChhhHHHHHHHhcCCCeEEEe
Q 022050 196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 196 ~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev--~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
.+++ .+.. .+.+.+.+... .+..+..|-+.... ..+.. .++.+++.+..+.++.+|+.- .+++.
T Consensus 123 ~st~-~~~~---------~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~~-~~~~~ 188 (320)
T 4dll_A 123 MASI-TPRE---------ARDHAARLGAL--GIAHLDTPVSGGTVGAEQGTL-VIMAGGKPADFERSLPLLKVF-GRATH 188 (320)
T ss_dssp CSCC-CHHH---------HHHHHHHHHHT--TCEEEECCEECHHHHHHHTCE-EEEEESCHHHHHHHHHHHHHH-EEEEE
T ss_pred cCCC-CHHH---------HHHHHHHHHHc--CCEEEeCCCcCCHhHHhcCCe-eEEeCCCHHHHHHHHHHHHhc-CCEEE
Confidence 6643 2221 12222222110 12233445443322 23322 234466777788888888877 67777
Q ss_pred cCChhHHHHHHHHHHHH--HHHHHHHhhh
Q 022050 274 NGDLVTHEVMGGLKNVY--AIGAGTIYFL 300 (303)
Q Consensus 274 ~~Di~g~e~~~~lkNv~--Ai~~G~~~gl 300 (303)
..+.-..++.+.+-|.+ ...+++.+++
T Consensus 189 ~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~ 217 (320)
T 4dll_A 189 VGPHGSGQLTKLANQMIVGITIGAVAEAL 217 (320)
T ss_dssp EESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999984 3345555543
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-15 Score=133.94 Aligned_cols=172 Identities=17% Similarity=0.168 Sum_probs=122.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||..+|..|+.. | ++|.+|+|++++.+.+..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~--------------------------------- 46 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA--------------------------------- 46 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred ceEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH---------------------------------
Confidence 7999999999999999999998 8 899999999876543210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHH---HHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl---~~l~~~l~~~~~~~iivs~~nG 199 (303)
..+..+++++++++++|+||+++| +..+++++ +++.+++++ +++|+++++|
T Consensus 47 ----------------------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~---~~~vv~~s~~ 101 (299)
T 1vpd_A 47 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI 101 (299)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred ----------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCC---CCEEEECCCC
Confidence 023445678788889999999999 56788888 678888877 7889998887
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHh-ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY-NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~-~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
.... .+.+.+.++... +.++..|-+..... ......++.+++.+..+.++++|+..|++++...|.-
T Consensus 102 ~~~~----------~~~l~~~~~~~g--~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~ 169 (299)
T 1vpd_A 102 APLA----------SREISDALKAKG--VEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIG 169 (299)
T ss_dssp CHHH----------HHHHHHHHHTTT--CEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEESTT
T ss_pred CHHH----------HHHHHHHHHHcC--CeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCcC
Confidence 6432 123444443211 22233343322111 1112223345667788999999999999999888888
Q ss_pred HHHHHHHHHHHHH
Q 022050 279 THEVMGGLKNVYA 291 (303)
Q Consensus 279 g~e~~~~lkNv~A 291 (303)
...|.+.+-|.+.
T Consensus 170 ~~~~~Kl~~n~~~ 182 (299)
T 1vpd_A 170 AGNVTKLANQVIV 182 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999999765
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-15 Score=135.27 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=124.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|.||.++|..|+++ | ++|++|+|++++++.+.+
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------- 42 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA-G-----FDVTVWNRNPAKCAPLVA-------------------------------- 42 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH-T-----CCEEEECSSGGGGHHHHH--------------------------------
T ss_pred CCeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence 57999999999999999999999 9 899999999987654211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
..+..+++++++++++|+||++||+. .+++++ +++.+.+.+ +++|+..++
T Consensus 43 -----------------------~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~---g~~vv~~st 96 (287)
T 3pdu_A 43 -----------------------LGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGG---GRGYIDMST 96 (287)
T ss_dssp -----------------------HTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCT---TCEEEECSC
T ss_pred -----------------------CCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccC---CCEEEECCC
Confidence 02445678888889999999999986 788888 778877776 778876664
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+ .+.. ...+.+.+.+ .+ +..+.+|.+. .....|... ++.+++.+..+.++.+|+.-+.+++...+
T Consensus 97 ~-~~~~-----~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l~-~~~gg~~~~~~~~~~ll~~~g~~~~~~g~ 163 (287)
T 3pdu_A 97 V-DDET-----STAIGAAVTA-RG-----GRFLEAPVSGTKKPAEDGTLI-ILAAGDQSLFTDAGPAFAALGKKCLHLGE 163 (287)
T ss_dssp C-CHHH-----HHHHHHHHHH-TT-----CEEEECCEECCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred C-CHHH-----HHHHHHHHHH-cC-----CEEEECCccCCHHHHhcCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 3 3221 1111222222 11 2233344332 222234322 23456677888999999988888888778
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHhh
Q 022050 277 LVTHEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 277 i~g~e~~~~lkNv~A--i~~G~~~g 299 (303)
.-..++.|..-|.+. +..++.+.
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea 188 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEG 188 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999854 34455554
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.8e-15 Score=141.36 Aligned_cols=184 Identities=16% Similarity=0.099 Sum_probs=125.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||..+|..|++ | ++|++|++++++++.++..++ +.+.+++.
T Consensus 1 MkI~VIG~G~vG~~~A~~La~--G-----~~V~~~d~~~~~~~~l~~~~~-----------------~i~e~~l~----- 51 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL--Q-----NEVTIVDILPSKVDKINNGLS-----------------PIQDEYIE----- 51 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--T-----SEEEEECSCHHHHHHHHTTCC-----------------SSCCHHHH-----
T ss_pred CEEEEECCCHHHHHHHHHHhC--C-----CEEEEEECCHHHHHHHHcCCC-----------------CcCCCCHH-----
Confidence 799999999999999999986 5 899999999988776543221 11111111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHHHhhccCCCCE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-----------~~~~vl~~l~~~l~~~~~~~i 192 (303)
+.++. ...++.+++++.++++++|+||+|||+. +++++++++.+ +.+ +++
T Consensus 52 ------~~~~~---------~~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~---~~i 112 (402)
T 1dlj_A 52 ------YYLKS---------KQLSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNS---HAT 112 (402)
T ss_dssp ------HHHHH---------SCCCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCS---SCE
T ss_pred ------HHHHh---------ccCcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCC---CCE
Confidence 00000 0014678889888889999999999997 59999999999 877 677
Q ss_pred EEE-eeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCCh-------hhHHHH
Q 022050 193 IIS-LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAE-------KWRKPL 260 (303)
Q Consensus 193 ivs-~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~-------~~~~~i 260 (303)
||. .+++.... +.+.+.++.. .+.++|.+..+... ..+..++++.+. +.++.+
T Consensus 113 VV~~ST~~~g~~-----------~~l~~~~~~~----~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~ 177 (402)
T 1dlj_A 113 LIIKSTIPIGFI-----------TEMRQKFQTD----RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKF 177 (402)
T ss_dssp EEECSCCCTTHH-----------HHHHHHTTCS----CEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred EEEeCCCCccHH-----------HHHHHHhCCC----eEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHH
Confidence 765 56555432 3455666532 35577876543221 112234444433 566888
Q ss_pred HHHhcCCCeE---EEecCChhHHHHHHHHHHHH
Q 022050 261 AKFLRRPHFT---VWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 261 ~~lf~~~g~~---~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++|...+++ ++...|+...||.|.+.|.+
T Consensus 178 ~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~ 210 (402)
T 1dlj_A 178 ALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY 210 (402)
T ss_dssp HHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCceEEecChHHHHHHHHHHHHH
Confidence 8888765554 56677899999999999986
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=131.13 Aligned_cols=178 Identities=13% Similarity=0.040 Sum_probs=119.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|||+|.||..+|..|++. | ++ |.+|+|++++++++.. .
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g-----~~~v~~~~~~~~~~~~~~~-------------------------~----- 53 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-G-----FRIVQVYSRTEESARELAQ-------------------------K----- 53 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSHHHHHHHHH-------------------------H-----
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEEeCCHHHHHHHHH-------------------------H-----
Confidence 47999999999999999999998 8 77 8999999876543210 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++..+++++++++++|+||+++|+...+++++++.+.+++ +++|+++++|+.
T Consensus 54 ------------------------~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~---~~ivv~~s~~~~ 106 (266)
T 3d1l_A 54 ------------------------VEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKRE---EALMVHTAGSIP 106 (266)
T ss_dssp ------------------------TTCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCT---TCEEEECCTTSC
T ss_pred ------------------------cCCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCC---CcEEEECCCCCc
Confidence 02445667777788999999999999999999999888876 789999999988
Q ss_pred cccccccccCCHHHHHHhHhCCCC--ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChh-
Q 022050 202 AELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV- 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~--~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~- 278 (303)
.+. +.+.++.+. ++...++|+.. ....+ ...++.+.+.+..+.++++|+..|++++..++.-
T Consensus 107 ~~~------------l~~~~~~~~~~~~~~~~~g~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~ 171 (266)
T 3d1l_A 107 MNV------------WEGHVPHYGVFYPMQTFSKQRE--VDFKE-IPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQR 171 (266)
T ss_dssp GGG------------STTTCSSEEEEEECCCC---CC--CCCTT-CCEEEEESSHHHHHHHHHHHHTTCSCEEECCHHHH
T ss_pred hHH------------HHHHHHhccCcCCceecCCCch--hhcCC-CeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHHHH
Confidence 652 233332110 11111123222 11122 2222335667778999999999998887766542
Q ss_pred --HHHHHHHHHHHHHHHHHHHh
Q 022050 279 --THEVMGGLKNVYAIGAGTIY 298 (303)
Q Consensus 279 --g~e~~~~lkNv~Ai~~G~~~ 298 (303)
...+.+..-|..+....+++
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~e 193 (266)
T 3d1l_A 172 KSLHLAAVFTCNFTNHMYALAA 193 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666665444444433
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=132.87 Aligned_cols=182 Identities=14% Similarity=0.075 Sum_probs=123.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||.++|..|+++ | ++|++|+|++++++++.+
T Consensus 1 s~~i~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------- 42 (287)
T 3pef_A 1 SQKFGFIGLGIMGSAMAKNLVKA-G-----CSVTIWNRSPEKAEELAA-------------------------------- 42 (287)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH--------------------------------
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------------------------------
Confidence 38999999999999999999999 8 999999999887653210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHH---HHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl---~~l~~~l~~~~~~~iivs~~n 198 (303)
.++..+++++++++++|+||++|| +..+++++ +++.+.+++ +++|++.+
T Consensus 43 -----------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vi~~s- 95 (287)
T 3pef_A 43 -----------------------LGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGE---GRGYVDMS- 95 (287)
T ss_dssp -----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECS-
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCC---CCEEEeCC-
Confidence 034566788888899999999999 56889998 888888877 77777664
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
++.+.. ...+.+.+.+. +......-+..+|..+ ..+.. .++.+++.+..+.++.+|+.-+.+++...+.-
T Consensus 96 t~~~~~-----~~~~~~~~~~~-g~~~~~~pv~g~~~~a---~~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g 165 (287)
T 3pef_A 96 TVDPAT-----SQRIGVAVVAK-GGRFLEAPVSGSKKPA---EDGTL-IILAAGDRNLYDEAMPGFEKMGKKIIHLGDVG 165 (287)
T ss_dssp CCCHHH-----HHHHHHHHHHT-TCEEEECCEECCHHHH---HHTCE-EEEEEECHHHHHHHHHHHHHHEEEEEECSSTT
T ss_pred CCCHHH-----HHHHHHHHHHh-CCEEEECCCcCCHHHH---hcCCE-EEEEeCCHHHHHHHHHHHHHhCCCeEEeCCCC
Confidence 444431 11122222221 2100000122333332 23322 23345567778899999998888888887888
Q ss_pred HHHHHHHHHHHHH--HHHHHHhh
Q 022050 279 THEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 279 g~e~~~~lkNv~A--i~~G~~~g 299 (303)
..++.+..-|.+. ...++.+.
T Consensus 166 ~~~~~Kl~~N~~~~~~~~~~~E~ 188 (287)
T 3pef_A 166 KGAEMKLVVNMVMGGMMACFCEG 188 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999863 34445443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=134.78 Aligned_cols=185 Identities=15% Similarity=0.120 Sum_probs=125.4
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
....+|||+|||+|.||.++|..|+++ | ++|++|+|++++++++.+
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~l~~---------------------------- 62 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKN-G-----FKVTVWNRTLSKCDELVE---------------------------- 62 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHHHH----------------------------
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH----------------------------
Confidence 344579999999999999999999999 9 899999999887653210
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHHHhhccCCCCEEE
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVII 194 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl---~~l~~~l~~~~~~~iiv 194 (303)
..+..++++.++++++|+||++||. ..+++++ +++.+.+.+ +++||
T Consensus 63 ---------------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~~vv 112 (310)
T 3doj_A 63 ---------------------------HGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICE---GKGYI 112 (310)
T ss_dssp ---------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEE
T ss_pred ---------------------------CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCC---CCEEE
Confidence 0345667888889999999999987 4788888 778777776 77777
Q ss_pred EeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE
Q 022050 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 195 s~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
.++ ++.+.. ...+.+.+.+. +. ..+..|-. +.....+... ++.+++.+..+.++.+|+.-+.+++
T Consensus 113 ~~s-t~~~~~-----~~~~~~~~~~~-g~-----~~v~~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~ll~~~g~~~~ 179 (310)
T 3doj_A 113 DMS-TVDAET-----SLKINEAITGK-GG-----RFVEGPVSGSKKPAEDGQLI-ILAAGDKALFEESIPAFDVLGKRSF 179 (310)
T ss_dssp ECS-CCCHHH-----HHHHHHHHHHT-TC-----EEEECCEECCHHHHHHTCEE-EEEEECHHHHHHHHHHHHHHEEEEE
T ss_pred ECC-CCCHHH-----HHHHHHHHHHc-CC-----EEEeCCCCCChhHHhcCCeE-EEEcCCHHHHHHHHHHHHHhCCCEE
Confidence 665 333321 11122222221 21 12222322 1112234322 3345567788899999988888888
Q ss_pred ecCChhHHHHHHHHHHHH--HHHHHHHhhh
Q 022050 273 DNGDLVTHEVMGGLKNVY--AIGAGTIYFL 300 (303)
Q Consensus 273 ~~~Di~g~e~~~~lkNv~--Ai~~G~~~gl 300 (303)
...+.-..++.+.+-|.+ ...+++.+.+
T Consensus 180 ~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~ 209 (310)
T 3doj_A 180 YLGQVGNGAKMKLIVNMIMGSMMNAFSEGL 209 (310)
T ss_dssp ECSSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999987 3445555543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-15 Score=131.77 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=111.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ |. ++|++|+|++++++++..+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g~----~~v~~~~r~~~~~~~~~~~-------------------------------- 43 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ-GG----YRIYIANRGAEKRERLEKE-------------------------------- 43 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS----CEEEEECSSHHHHHHHHHH--------------------------------
T ss_pred CEEEEECchHHHHHHHHHHHHC-CC----CeEEEECCCHHHHHHHHHh--------------------------------
Confidence 7999999999999999999998 62 5899999998765432100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.++.+++++.+++ ++|+||++||++.++++++++.+ + +++|+++++|+.++
T Consensus 44 ----------------------~g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~l~~---~---~~ivv~~~~g~~~~ 94 (263)
T 1yqg_A 44 ----------------------LGVETSATLPELH-SDDVLILAVKPQDMEAACKNIRT---N---GALVLSVAAGLSVG 94 (263)
T ss_dssp ----------------------TCCEEESSCCCCC-TTSEEEECSCHHHHHHHHTTCCC---T---TCEEEECCTTCCHH
T ss_pred ----------------------cCCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHHhcc---C---CCEEEEecCCCCHH
Confidence 0233455666667 99999999999999999887654 2 57899999998763
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEec-CC
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GD 276 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~-~D 276 (303)
.+.+.++.+ .++ +..+|+++..+..|.+. +..+. +.+..+.++++|+..|++++.. +|
T Consensus 95 ------------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~~~-i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 155 (263)
T 1yqg_A 95 ------------TLSRYLGGT-RRI-VRVMPNTPGKIGLGVSG-MYAEAEVSETDRRIADRIMKSVGLTVWLDDEE 155 (263)
T ss_dssp ------------HHHHHTTSC-CCE-EEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHHTTEEEEECSSTT
T ss_pred ------------HHHHHcCCC-CcE-EEEcCCHHHHHcCceEE-EEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh
Confidence 366666542 123 33479998877776432 22233 5567899999999999998776 54
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.68 Aligned_cols=182 Identities=14% Similarity=0.046 Sum_probs=121.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||+++|..|+++ | ++|++|+|++++++.+.+. +
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~~~------------------------g----- 50 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRA-G-----LSTWGADLNPQACANLLAE------------------------G----- 50 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHT------------------------T-----
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHc------------------------C-----
Confidence 458999999999999999999999 9 8999999998766542110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH---HHHHHHhhccCCCCEEEEee
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLA 197 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl---~~l~~~l~~~~~~~iivs~~ 197 (303)
...+++++++++++||+||++||+. .+++++ +++.+.+++ +++||..+
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~ivv~~s 102 (303)
T 3g0o_A 51 -------------------------ACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKP---GSAVMVSS 102 (303)
T ss_dssp -------------------------CSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCT---TCEEEECS
T ss_pred -------------------------CccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCC---CCEEEecC
Confidence 0112567778889999999999985 688887 778887876 77887665
Q ss_pred ccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecC
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
+. .+.. .+.+.+.+.... +..+..|-+ +.....+.. .++.+++.+..+.++.+|+.-+.+++...
T Consensus 103 t~-~~~~---------~~~~~~~~~~~g--~~~~~~pv~g~~~~a~~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~~ 169 (303)
T 3g0o_A 103 TI-SSAD---------AQEIAAALTALN--LNMLDAPVSGGAVKAAQGEM-TVMASGSEAAFTRLKPVLDAVASNVYRIS 169 (303)
T ss_dssp CC-CHHH---------HHHHHHHHHTTT--CEEEECCEESCHHHHHTTCE-EEEEECCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CC-CHHH---------HHHHHHHHHHcC--CeEEeCCCCCChhhhhcCCe-EEEeCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 43 3321 122333321111 122234432 222223332 23345677788999999998888877666
Q ss_pred C-hhHHHHHHHHHHHHH--HHHHHHhh
Q 022050 276 D-LVTHEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 276 D-i~g~e~~~~lkNv~A--i~~G~~~g 299 (303)
+ +-..++.|..-|.+. ..+++.+.
T Consensus 170 ~~~g~a~~~Kl~~N~~~~~~~~~~~Ea 196 (303)
T 3g0o_A 170 DTPGAGSTVKIIHQLLAGVHIAAAAEA 196 (303)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 777899999999874 34555554
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=132.42 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=116.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||+++|..|++. | ++|++|+|++++++++.+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~-------------------------------- 71 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKM-G-----HTVTVWNRTAEKCDLFIQ-------------------------------- 71 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSGGGGHHHHH--------------------------------
T ss_pred CCeEEEEcccHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHH--------------------------------
Confidence 48999999999999999999998 8 899999999876543210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHHHHH---HHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl~~l~---~~l~~~~~~~iivs~~n 198 (303)
..+..++++.++++++|+||++|| +..+++++.++. +.+.+ +++|+++++
T Consensus 72 -----------------------~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~---~~~vv~~s~ 125 (316)
T 2uyy_A 72 -----------------------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRP---GKCYVDMST 125 (316)
T ss_dssp -----------------------TTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEEECSC
T ss_pred -----------------------cCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCC---CCEEEECCC
Confidence 023345677777889999999999 678888887654 55555 788888876
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.... .+.+.+.++.. ...++.+|.+ +.....+.... +.+++.+..+.++++|+..|++++...|
T Consensus 126 ~~~~~----------~~~l~~~~~~~--~~~~v~~p~~g~~~~~~~g~~~~-~~~g~~~~~~~v~~ll~~~g~~~~~~~~ 192 (316)
T 2uyy_A 126 VDADT----------VTELAQVIVSR--GGRFLEAPVSGNQQLSNDGMLVI-LAAGDRGLYEDCSSCFQAMGKTSFFLGE 192 (316)
T ss_dssp CCHHH----------HHHHHHHHHHT--TCEEEECCEESCHHHHHHTCEEE-EEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred CCHHH----------HHHHHHHHHHc--CCEEEEcCccCChhHHhhCCEEE-EeCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence 43221 12234443211 1233444433 33344443332 3344566788899999999999988878
Q ss_pred hhHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVY 290 (303)
Q Consensus 277 i~g~e~~~~lkNv~ 290 (303)
+-..+|.+.+-|.+
T Consensus 193 ~~~~~~~K~~~n~~ 206 (316)
T 2uyy_A 193 VGNAAKMMLIVNMV 206 (316)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 76666777776665
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=128.75 Aligned_cols=180 Identities=9% Similarity=0.059 Sum_probs=121.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCC--chhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.+|||+|||+|.||.++|..|+++ | + +|++|+|++ +..+.+ ..
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~-G-----~~~V~~~dr~~~~~~~~~~--------------------------~~-- 68 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQA-G-----AIDMAAYDAASAESWRPRA--------------------------EE-- 68 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHH-S-----CCEEEEECSSCHHHHHHHH--------------------------HH--
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CCeEEEEcCCCCHHHHHHH--------------------------HH--
Confidence 468999999999999999999999 9 8 999999974 433211 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.++..++++.+++++||+||++||+....++++++.+++++ +++||.++
T Consensus 69 ---------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~---~~ivvd~s- 117 (312)
T 3qsg_A 69 ---------------------------LGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCE---GALYADFT- 117 (312)
T ss_dssp ---------------------------TTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCT---TCEEEECC-
T ss_pred ---------------------------CCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCC---CCEEEEcC-
Confidence 13456678888889999999999999988899999988877 77877665
Q ss_pred cCccccccccccCCHHHHHHhHh-CCCCccE-EEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRAT-GVPIENI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l-~~~~~~~-~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
++.+.+ .....+.+.+.. +. +.+ .-++||..+. .+... ++++++.. +.++.+|+.-+.+++...+
T Consensus 118 t~~~~~-----~~~~~~~~~~~~~g~--~~vd~pv~g~~~~~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~~~~~g~ 184 (312)
T 3qsg_A 118 SCSPAV-----KRAIGDVISRHRPSA--QYAAVAVMSAVKPH---GHRVP-LVVDGDGA--RRFQAAFTLYGCRIEVLDG 184 (312)
T ss_dssp CCCHHH-----HHHHHHHHHHHCTTC--EEEEEEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEECCS
T ss_pred CCCHHH-----HHHHHHHHHhhcCCC--eEEeccccCCchhh---cCCEE-EEecCChH--HHHHHHHHHhCCCeEEcCC
Confidence 333321 112222333322 21 111 2356654432 33332 23344433 8889999999998887776
Q ss_pred -hhHHHHHHHHHHHHH--HHHHHHhh
Q 022050 277 -LVTHEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 277 -i~g~e~~~~lkNv~A--i~~G~~~g 299 (303)
+-..++.+..-|.+. ..+++.+.
T Consensus 185 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea 210 (312)
T 3qsg_A 185 EVGGAALLKMCRSAVLKGLEALFLEA 210 (312)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999764 23444443
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=133.70 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=117.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+.+|..|+++ | ++|++|+|++++++++++++ ..++.+.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~----- 54 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG------------------AIIAEGP----- 54 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT------------------SEEEESS-----
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHhcC------------------CeEEecc-----
Confidence 38999999999999999999998 8 89999999988766533210 0111110
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+. . ...+ .++++++++++++|+||++||+...+++++++.+++++ +++|++. +|+.
T Consensus 55 --~~~-------~---------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~---~~~vv~~-~~~~ 112 (359)
T 1bg6_A 55 --GLA-------G---------TAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLIILN-PGAT 112 (359)
T ss_dssp --SCC-------E---------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEES-SCCS
T ss_pred --ccc-------c---------ccccceecCCHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCC---CCEEEEc-CCCc
Confidence 000 0 0123 46678888888999999999999999999999998887 7888877 5543
Q ss_pred cccccccccCCHHHHHHhH------h-CCCCccEE-EEeCCCcHHHHh-ccCceEEEE-e-CChhhHHHHHHHhcCCCeE
Q 022050 202 AELEAVPRIITPTQMINRA------T-GVPIENIL-YLGGPNIASEIY-NKEYANARI-C-GAEKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~------l-~~~~~~~~-v~~GP~~a~ev~-~g~~~~~~~-~-~~~~~~~~i~~lf~~~g~~ 270 (303)
... .. ..+.+.+. + +....++. .+.||+++.... .+....... . .+.+..+.++++|.. +.
T Consensus 113 ~~~-----~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~~ 184 (359)
T 1bg6_A 113 GGA-----LE-FRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQ--YV 184 (359)
T ss_dssp SHH-----HH-HHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTT--EE
T ss_pred hHH-----HH-HHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEeccccccHHHHHHHHHHhhh--cE
Confidence 321 01 12333321 1 00112333 346777655332 122222222 1 223356778888853 43
Q ss_pred EEecCChhHHHHHHHHHHHHHH
Q 022050 271 VWDNGDLVTHEVMGGLKNVYAI 292 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~Ai 292 (303)
.++|+ |.+++||+.|+
T Consensus 185 --~~~di----~~k~~~nvn~~ 200 (359)
T 1bg6_A 185 --AVENV----LHTSLTNVNAV 200 (359)
T ss_dssp --ECSCH----HHHHHCCHHHH
T ss_pred --EcCCh----HhhhccCCCcc
Confidence 46775 99999998887
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.9e-14 Score=136.40 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=128.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||..+|..|++ | ++|++||+++++++.++.. .++.+.++++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~--G-----~~V~~~D~~~~~v~~l~~g-----------------~~~i~e~~l~~-- 88 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ--N-----HEVVALDIVQAKVDMLNQK-----------------ISPIVDKEIQE-- 88 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT--T-----SEEEEECSCHHHHHHHHTT-----------------CCSSCCHHHHH--
T ss_pred CCCEEEEECcCHHHHHHHHHHHc--C-----CeEEEEecCHHHhhHHhcc-----------------CCccccccHHH--
Confidence 46899999999999999999985 6 8999999999988765432 12334444321
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------hHHHHHHHHHHHhhccCCC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITV 190 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-----------~~~~vl~~l~~~l~~~~~~ 190 (303)
++..+ ..++++++|+++++++||+||++||+. +++++++.+.+ +++ +
T Consensus 89 ---------ll~~~---------~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~---g 146 (432)
T 3pid_A 89 ---------YLAEK---------PLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP---N 146 (432)
T ss_dssp ---------HHHHS---------CCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT---T
T ss_pred ---------HHhhc---------cCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCC---C
Confidence 11100 025889999999999999999999986 58889999999 877 6
Q ss_pred CEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcC
Q 022050 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (303)
Q Consensus 191 ~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~ 266 (303)
++|| ..+++.+.+ .+.+.+.+... .+.+.|.+..+... -.|..++++.+.+.++.+..+|..
T Consensus 147 ~iVV-~~STv~pgt---------t~~l~~~l~~~----~v~~sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 147 AVMI-IKSTIPVGF---------TRDIKERLGID----NVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKE 212 (432)
T ss_dssp SEEE-ECSCCCTTH---------HHHHHHHHTCC----CEEECCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHH
T ss_pred cEEE-EeCCCChHH---------HHHHHHHHhhc----cEeecCccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHh
Confidence 7666 455666652 23344445421 24457777544321 123345566666677778888764
Q ss_pred ----CCeEEEecCChhHHHHHHHHHHHHH
Q 022050 267 ----PHFTVWDNGDLVTHEVMGGLKNVYA 291 (303)
Q Consensus 267 ----~g~~~~~~~Di~g~e~~~~lkNv~A 291 (303)
.+..+.. .++-..|+.|.+-|.+-
T Consensus 213 ~~~~~~~~v~~-~~~~~AE~~Kl~~N~~~ 240 (432)
T 3pid_A 213 GAIKQDIPTLF-TDSTEAEAIKLFANTYL 240 (432)
T ss_dssp HCSSSSCCEEE-CCHHHHHHHHHHHHHHH
T ss_pred hhccCCCeEEe-cCccHHHHHHHHHHHHH
Confidence 2334444 57999999999999863
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-14 Score=131.37 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=123.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||..+|..|+++ | ++|++|+|++++++++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~-------------------------------- 56 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-P-----GGVTVYDIRIEAMTPLAE-------------------------------- 56 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-T-----TCEEEECSSTTTSHHHHH--------------------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------------------------------
Confidence 37999999999999999999998 8 899999999987654210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++++++++++ +|+||++||. ..++++++++.+.+++ +++||..++. .
T Consensus 57 -----------------------~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~---g~ivv~~st~-~ 108 (296)
T 3qha_A 57 -----------------------AGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKP---GTVIAIHSTI-S 108 (296)
T ss_dssp -----------------------TTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCT---TCEEEECSCC-C
T ss_pred -----------------------CCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCC---CCEEEEeCCC-C
Confidence 03456678888888 9999999995 5789999999988877 7787766533 3
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
+.. .+.+.+.+... .+..+..|-+.. ....+.. .++.+++.+..++++.+|+.-+.+++...+.-.
T Consensus 109 ~~~---------~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~ 176 (296)
T 3qha_A 109 DTT---------AVELARDLKAR--DIHIVDAPVSGGAAAAARGEL-ATMVGADREVYERIKPAFKHWAAVVIHAGEPGA 176 (296)
T ss_dssp HHH---------HHHHHHHHGGG--TCEEEECCEESCHHHHHHTCE-EEEEECCHHHHHHHHHHHHHHEEEEEEEESTTH
T ss_pred HHH---------HHHHHHHHHHc--CCEEEeCCCcCCHHHHhcCCc-cEEecCCHHHHHHHHHHHHHHcCCeEEcCChhH
Confidence 321 12233333111 122233343321 1223332 234466777889999999988888887777888
Q ss_pred HHHHHHHHHHHHH--HHHHHhh
Q 022050 280 HEVMGGLKNVYAI--GAGTIYF 299 (303)
Q Consensus 280 ~e~~~~lkNv~Ai--~~G~~~g 299 (303)
.++.|..-|.+.- .+++.+.
T Consensus 177 a~~~Kl~~N~~~~~~~~~~~E~ 198 (296)
T 3qha_A 177 GTRMKLARNMLTFTSYAAACEA 198 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999997652 3444444
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-14 Score=140.55 Aligned_cols=199 Identities=14% Similarity=0.104 Sum_probs=131.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||..+|..|+++ |. +++|++||+++++++.++..+ .+.+.+++.
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~-g~---g~~V~~~D~~~~~v~~l~~g~-----------------~~i~e~gl~---- 63 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK-CP---HITVTVVDMNTAKIAEWNSDK-----------------LPIYEPGLD---- 63 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH-CT---TSEEEEECSCHHHHHHHTSSS-----------------CSSCCTTHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CC---CCEEEEEECCHHHHHHHHCCC-----------------CCcCCCCHH----
Confidence 58999999999999999999987 40 178999999998887654221 122222211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch---------------hHHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST---------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~---------------~~~~vl~~l~~~l~~~ 187 (303)
+.+.... ..++.+++|+.+++++||+||+|||.. ++.+++++|.+++++
T Consensus 64 -------~~~~~~~--------~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~- 127 (481)
T 2o3j_A 64 -------EIVFAAR--------GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG- 127 (481)
T ss_dssp -------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS-
T ss_pred -------HHHHHhh--------cCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC-
Confidence 0000000 025788899888889999999999764 388899999999887
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCC-CCccEEEEeCCCcHHHHhc----cCceEEEE-eCCh----hhH
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV-PIENILYLGGPNIASEIYN----KEYANARI-CGAE----KWR 257 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~v~~GP~~a~ev~~----g~~~~~~~-~~~~----~~~ 257 (303)
+++||. .+++.+.+ ...+.+.+.+..+. ....+.+.++|.+..+... ..+..+++ +.+. +..
T Consensus 128 --g~iVV~-~STv~~gt-----~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~ 199 (481)
T 2o3j_A 128 --PKIVVE-KSTVPVKA-----AESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAV 199 (481)
T ss_dssp --CEEEEE-CSCCCTTH-----HHHHHHHHHHHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHH
T ss_pred --CCEEEE-CCCCCCCH-----HHHHHHHHHHhhCcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHHH
Confidence 666663 33555542 22234444442221 1123557889988654321 22323444 3322 356
Q ss_pred HHHHHHhcCCCe-EEEecCChhHHHHHHHHHHHH
Q 022050 258 KPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 258 ~~i~~lf~~~g~-~~~~~~Di~g~e~~~~lkNv~ 290 (303)
+.++++|+..+. .++...|+...||.|.+-|.+
T Consensus 200 ~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~ 233 (481)
T 2o3j_A 200 AELVRIYENWVPRNRIITTNTWSSELSKLVANAF 233 (481)
T ss_dssp HHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH
Confidence 888899988774 667788999999999999985
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=140.97 Aligned_cols=184 Identities=14% Similarity=0.087 Sum_probs=125.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|+||+++|..|+++ | ++|++|+|+++++++++++ .++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~~r~~~~~~~l~~~----------------------~~~------ 60 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESR-G-----YTVSIFNRSREKTEEVIAE----------------------NPG------ 60 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH----------------------STT------
T ss_pred CCeEEEEccHHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHhh----------------------CCC------
Confidence 47899999999999999999999 9 8999999998876543210 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.++..++++++++++ +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 61 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 114 (480)
T 2zyd_A 61 -----------------------KKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDK---GDIIIDGGN 114 (480)
T ss_dssp -----------------------SCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCC---CCEEEECCC
Confidence 135667788888776 9999999999 5899999999998887 789999999
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeE------
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------ 270 (303)
|....+ ....+.+.+. + +..+.+|....+ ...|. .++.+++.+..+.++.+|+.-+.+
T Consensus 115 g~~~~t------~~l~~~l~~~-g-----~~~v~~pv~gg~~~a~~g~--~i~~gg~~~~~~~v~~ll~~~g~~~~dGe~ 180 (480)
T 2zyd_A 115 TFFQDT------IRRNRELSAE-G-----FNFIGTGVSGGEEGALKGP--SIMPGGQKEAYELVAPILTKIAAVAEDGEP 180 (480)
T ss_dssp CCHHHH------HHHHHHHHHT-T-----CEEEEEEEESHHHHHHHCC--EEEEESCHHHHHHHHHHHHHHSCBCTTSCB
T ss_pred CCHHHH------HHHHHHHHHC-C-----CCeeCCccccCHhHHhcCC--eEEecCCHHHHHHHHHHHHHHhccccCCCc
Confidence 976541 1112223221 2 112233433222 23343 244566677788888888866655
Q ss_pred -EEecCChhHHHHHHHHHHHH--HHHHHHHhhh
Q 022050 271 -VWDNGDLVTHEVMGGLKNVY--AIGAGTIYFL 300 (303)
Q Consensus 271 -~~~~~Di~g~e~~~~lkNv~--Ai~~G~~~gl 300 (303)
+....+.-...+.|..-|.+ ++..++++++
T Consensus 181 ~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~ 213 (480)
T 2zyd_A 181 CVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAY 213 (480)
T ss_dssp SBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444557778888876 4556666653
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=119.74 Aligned_cols=186 Identities=12% Similarity=0.171 Sum_probs=123.6
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|+| +|.||++++..|++. | ++|++|+|++++.+++..+ +. .+++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~-g-----~~V~~~~r~~~~~~~~~~~-----~~-------------~~~~~------ 50 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----YR-------------RIAGD------ 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----HH-------------HHHSS------
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHH-----hc-------------ccccc------
Confidence 6899999 999999999999998 8 8999999998766542211 00 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..+.. +++.++++++|+||+++|+...+++++++.+.+ + +++++++++|+..
T Consensus 51 -----------------------~~~~~-~~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~-~---~~~vi~~~~g~~~ 102 (212)
T 1jay_A 51 -----------------------ASITG-MKNEDAAEACDIAVLTIPWEHAIDTARDLKNIL-R---EKIVVSPLVPVSR 102 (212)
T ss_dssp -----------------------CCEEE-EEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHH-T---TSEEEECCCCEEC
T ss_pred -----------------------CCCCh-hhHHHHHhcCCEEEEeCChhhHHHHHHHHHHHc-C---CCEEEEcCCCcCc
Confidence 02433 567777889999999999999999999988877 3 6899999999985
Q ss_pred ccccc--cccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhcc-----CceEEEEeCChhhHHHHHHHhcCC-CeEEEec
Q 022050 203 ELEAV--PRIITPTQMINRATGVPIENILYLGGPNIASEIYNK-----EYANARICGAEKWRKPLAKFLRRP-HFTVWDN 274 (303)
Q Consensus 203 ~~~~~--~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g-----~~~~~~~~~~~~~~~~i~~lf~~~-g~~~~~~ 274 (303)
++... .......+.+.+.++. .. .+...|+.+.....+ .....+.+.+.+..+.+.++|+.. |+.+...
T Consensus 103 ~~~~~~~~~g~~~~~~l~~~~~~--~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~ 179 (212)
T 1jay_A 103 GAKGFTYSSERSAAEIVAEVLES--EK-VVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDA 179 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTC--SC-EEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--Ce-EEEEccchHHHHhhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceec
Confidence 31000 0111224557777753 22 344555554433322 122222233466789999999999 9988777
Q ss_pred CChhHHHHHHHHHHHH
Q 022050 275 GDLVTHEVMGGLKNVY 290 (303)
Q Consensus 275 ~Di~g~e~~~~lkNv~ 290 (303)
.++-...|.+.+-|.|
T Consensus 180 ~~~~~a~~~k~~~~~~ 195 (212)
T 1jay_A 180 GPLSNSRLVESLTPLI 195 (212)
T ss_dssp ESGGGHHHHHTHHHHH
T ss_pred cchhHHHHhcchHHHH
Confidence 7776666666555543
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=128.97 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=120.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||..+|..|++. | ++|++|+|++++.+++..
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~-------------------------------- 45 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKE-G-----VTVYAFDLMEANVAAVVA-------------------------------- 45 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHT--------------------------------
T ss_pred CCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------------------------------
Confidence 48999999999999999999998 8 899999999876543110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHHH---HHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE---EISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl~---~l~~~l~~~~~~~iivs~~n 198 (303)
..+..++++.++++++|+||++||. ..+++++. ++.+.+++ +++|+++++
T Consensus 46 -----------------------~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~~~ 99 (301)
T 3cky_A 46 -----------------------QGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKA---GTVIVDMSS 99 (301)
T ss_dssp -----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCT---TCEEEECCC
T ss_pred -----------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCC---CCEEEECCC
Confidence 0234456787888899999999965 56888885 78888877 789999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH--hccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev--~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
|.... .+.+.+.++... +.++..|...... ..+... ++.+++.+..+.++++|+..|++++...+
T Consensus 100 ~~~~~----------~~~l~~~~~~~g--~~~~~~p~~~~~~~a~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~~ 166 (301)
T 3cky_A 100 VSPSS----------TLKMAKVAAEKG--IDYVDAPVSGGTKGAEAGTLT-IMVGASEAVFEKIQPVLSVIGKDIYHVGD 166 (301)
T ss_dssp CCHHH----------HHHHHHHHHHTT--CEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEES
T ss_pred CCHHH----------HHHHHHHHHHcC--CeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence 87422 122333332111 1222344433221 123222 23455667788999999999999887777
Q ss_pred hhHHHHHHHHHHHHH
Q 022050 277 LVTHEVMGGLKNVYA 291 (303)
Q Consensus 277 i~g~e~~~~lkNv~A 291 (303)
.-...|.+.+-|.+.
T Consensus 167 ~g~~~~~Kl~~N~~~ 181 (301)
T 3cky_A 167 TGAGDAVKIVNNLLL 181 (301)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777789999999763
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=124.58 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=109.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||.+++..|++. | ++|.+|+|++++++++.++ .
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~-g-----~~v~~~~~~~~~~~~~~~~-------------------------~---- 46 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAEQ-------------------------L---- 46 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHHH-------------------------H----
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHHHH-------------------------c----
Confidence 358999999999999999999988 8 8999999998765432100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++..++++.++++++|+||+++|++..+++++++. + ++++++.++|+.
T Consensus 47 -------------------------g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l~----~---~~~vv~~~~~~~ 94 (259)
T 2ahr_A 47 -------------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLH----F---KQPIISMAAGIS 94 (259)
T ss_dssp -------------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSC----C---CSCEEECCTTCC
T ss_pred -------------------------CCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHhc----c---CCEEEEeCCCCC
Confidence 12234567777889999999999998888887653 4 678899988887
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeC--ChhhHHHHHHHhcCCCeEEEecC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~--~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.+ .+.+.++.. .+ .+..+|+++.....|... ++.+. +.+..+.++++|+..|...+..+
T Consensus 95 ~~------------~l~~~~~~~-~~-~v~~~p~~~~~~~~g~~~-i~~~~~~~~~~~~~~~~ll~~~G~~~~~~~ 155 (259)
T 2ahr_A 95 LQ------------RLATFVGQD-LP-LLRIMPNMNAQILQSSTA-LTGNALVSQELQARVRDLTDSFGSTFDISE 155 (259)
T ss_dssp HH------------HHHHHHCTT-SC-EEEEECCGGGGGTCEEEE-EEECTTCCHHHHHHHHHHHHTTEEEEECCG
T ss_pred HH------------HHHHhcCCC-CC-EEEEcCCchHHHcCceEE-EEcCCCCCHHHHHHHHHHHHhCCCEEEecH
Confidence 54 355666532 12 345789998887777322 23333 56678999999999885444443
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=127.79 Aligned_cols=185 Identities=13% Similarity=0.139 Sum_probs=113.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++||+|||+|.||++||..|+++ | ++|++||++++++++.... +... +.+..+... +.....
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-----i~~~---l~~~~~~g~-~~~~~~-- 76 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKKG-----IEES---LRKVAKKKF-AENPKA-- 76 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHH-----HHHH---HHHHHHTTS-SSCHHH--
T ss_pred cCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---HHHHHHcCC-CCcccc--
Confidence 357999999999999999999999 9 8999999999877653211 1110 000000000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. .+..++ .+.++++++|+++++++||+||++||+.. ++++++++.+++++ +++|+++++|
T Consensus 77 -~-~~~~~~-------------~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~---~~iv~s~ts~ 138 (302)
T 1f0y_A 77 -G-DEFVEK-------------TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSS 138 (302)
T ss_dssp -H-HHHHHH-------------HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSS
T ss_pred -c-hhhHHH-------------HHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCC
Confidence 0 000000 00257788999888999999999999974 67899999988887 7899999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+... .+.+.+..+. .+ +...|..+... +....++.+ .+.+..+.+.+++..-|..++...|.
T Consensus 139 i~~~------------~l~~~~~~~~-~~-~g~h~~~P~~~--~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~ 202 (302)
T 1f0y_A 139 LQIT------------SIANATTRQD-RF-AGLHFFNPVPV--MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT 202 (302)
T ss_dssp SCHH------------HHHTTSSCGG-GE-EEEEECSSTTT--CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCHH------------HHHHhcCCcc-cE-EEEecCCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc
Confidence 8764 2444443321 22 22233332222 211222223 25567788888888877766554453
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=136.34 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=133.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
.|++|||+|.||..+|..|+++ | ++|++||+++++++.++.. +.|.+.+++..
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~-G-----~~V~~~D~~~~kv~~L~~g-----------------~~pi~epgl~~---- 64 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH-G-----VDVLGVDINQQTIDKLQNG-----------------QISIEEPGLQE---- 64 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTT-----------------CCSSCCTTHHH----
T ss_pred CccEEEeeCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHCC-----------------CCCcCCCCHHH----
Confidence 6899999999999999999999 9 9999999999988876532 13455554321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh------------HHHHHHHHHHHhhccCCCC
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISRYWKERITVP 191 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~------------~~~vl~~l~~~l~~~~~~~ 191 (303)
++.+... ..++.+++|+ ++||+||+|||... +..+.+.+.+++++ ++
T Consensus 65 -------ll~~~~~-------~g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~---g~ 123 (431)
T 3ojo_A 65 -------VYEEVLS-------SGKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKK---GN 123 (431)
T ss_dssp -------HHHHHHH-------TTCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCT---TE
T ss_pred -------HHHhhcc-------cCceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCC---CC
Confidence 1100000 0257888873 47999999998864 77888899998887 66
Q ss_pred EEEEeeccCccccccccccCCHHHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEEeCChhhHHHHHHHhcC
Q 022050 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (303)
Q Consensus 192 iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~~~~~~~~~~i~~lf~~ 266 (303)
+|| ..+++.+.+ ...+.+.+.+..|.. ...+.++++|.+..+... ..|..++.+.+.+..+.++.+|+.
T Consensus 124 iVV-~~STV~pgt-----t~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~ 197 (431)
T 3ojo_A 124 TII-VESTIAPKT-----MDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRT 197 (431)
T ss_dssp EEE-ECSCCCTTH-----HHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEE-EecCCChhH-----HHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHH
Confidence 554 666888762 333444443433321 124788999987654321 124445556677788999999986
Q ss_pred CCeEEEecCChhHHHHHHHHHHHH
Q 022050 267 PHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 267 ~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
-+-..+...|+-..|.+|..-|.+
T Consensus 198 ~~~~~~~~~~~~~AE~~Kl~~N~~ 221 (431)
T 3ojo_A 198 FVQGEMIETDARTAEMSKLMENTY 221 (431)
T ss_dssp TCCSCEEEEEHHHHHHHHHHHHHH
T ss_pred HhCCcEEeCCHHHHHHHHHHHHHH
Confidence 554344457899999999999986
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=139.66 Aligned_cols=183 Identities=15% Similarity=0.042 Sum_probs=122.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|.+|+|++++++++++. + .++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~--------~-------------~~g------- 48 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLAN--------E-------------AKG------- 48 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHT--------T-------------TTT-------
T ss_pred CeEEEEChHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHhc--------c-------------ccC-------
Confidence 7999999999999999999999 8 8999999999876543210 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~---~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++..++++++++ +++|+||++||+. .++++++++.+++++ +++||++++|
T Consensus 49 ----------------------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iII~~s~~ 103 (482)
T 2pgd_A 49 ----------------------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNS 103 (482)
T ss_dssp ----------------------SSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCC
T ss_pred ----------------------CCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCC---CCEEEECCCC
Confidence 0355667888876 4899999999995 899999999999887 7899999988
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH--hccCceEEEEeCChhhHHHHHHHhcCCCeEE------
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTV------ 271 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev--~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~------ 271 (303)
..... +.+.+.+... .+..+.+|....+. ..|. .++.+++.+..+.++.+|+..+.++
T Consensus 104 ~~~~~----------~~l~~~l~~~--g~~~v~~pv~g~~~~a~~g~--~i~~gg~~e~~~~v~~ll~~~g~~v~d~~~~ 169 (482)
T 2pgd_A 104 EYRDT----------MRRCRDLKDK--GILFVGSGVSGGEDGARYGP--SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPC 169 (482)
T ss_dssp CHHHH----------HHHHHHHHHT--TCEEEEEEEESHHHHHHHCC--EEEEEECTTTHHHHHHHHHHHSCBCTTSCBS
T ss_pred CHHHH----------HHHHHHHHHc--CCeEeCCCCCCChhhhccCC--eEEeCCCHHHHHHHHHHHHHhhhhccCCCcc
Confidence 76531 1123333111 12233455543332 3343 2344556677888999998877765
Q ss_pred -EecCChhHHHHHHHHHHHH--HHHHHHHhh
Q 022050 272 -WDNGDLVTHEVMGGLKNVY--AIGAGTIYF 299 (303)
Q Consensus 272 -~~~~Di~g~e~~~~lkNv~--Ai~~G~~~g 299 (303)
....+.-...+.+..-|.+ ++..++.+.
T Consensus 170 ~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea 200 (482)
T 2pgd_A 170 CDWVGDDGAGHFVKMVHNGIEYGDMQLICEA 200 (482)
T ss_dssp CCCCEETTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233346777788865 334555554
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=128.84 Aligned_cols=185 Identities=17% Similarity=0.157 Sum_probs=109.6
Q ss_pred eccCCchhhhhhHHHHHhccCC-CCCceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHH
Q 022050 19 HHTNGSLEERLDELRRLMGKAE-GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFE 95 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~-~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~ 95 (303)
||+.| |--|---+..+++... ..+|||+|||+|.||.++|..|++. | + +|++|+|++++++.+.+
T Consensus 9 ~~~~~-~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~l~~~-G-----~~~~V~~~dr~~~~~~~a~~----- 76 (314)
T 3ggo_A 9 HHSSG-LVPRGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKAVD----- 76 (314)
T ss_dssp ---------------------CCCSCSEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHHHH-----
T ss_pred ccccC-ccccccCcCcCCchhhhcCCCEEEEEeeCHHHHHHHHHHHhC-C-----CCCEEEEEECCHHHHHHHHH-----
Confidence 44444 3333333554444432 2348999999999999999999998 8 6 89999999876543110
Q ss_pred HHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHH
Q 022050 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETK 174 (303)
Q Consensus 96 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~-a~~~aDlVIiaVp~~~~~ 174 (303)
. +. ....++++++ ++++||+||+|||+..+.
T Consensus 77 ------------------~-G~-----------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~ 108 (314)
T 3ggo_A 77 ------------------L-GI-----------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFR 108 (314)
T ss_dssp ------------------T-TS-----------------------------CSEEESCTTGGGGGCCSEEEECSCGGGHH
T ss_pred ------------------C-CC-----------------------------cchhcCCHHHHhhccCCEEEEeCCHHHHH
Confidence 0 00 1134567777 789999999999999999
Q ss_pred HHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCC---CccEE--EEeCCCcHH-HHhccCceEE
Q 022050 175 EVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANA 248 (303)
Q Consensus 175 ~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~---~~~~~--v~~GP~~a~-ev~~g~~~~~ 248 (303)
++++++.+++++ +++|+++++. ... +.+.+.+.++.. .+|+. ..+||..+. ++..|.+..+
T Consensus 109 ~vl~~l~~~l~~---~~iv~d~~Sv-k~~---------~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il 175 (314)
T 3ggo_A 109 EIAKKLSYILSE---DATVTDQGSV-KGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVIL 175 (314)
T ss_dssp HHHHHHHHHSCT---TCEEEECCSC-CTH---------HHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEE
T ss_pred HHHHHHhhccCC---CcEEEECCCC-cHH---------HHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEE
Confidence 999999999887 7887765532 211 122344433211 12211 123444433 2345554433
Q ss_pred EEe--CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 249 RIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 249 ~~~--~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+.. .+.+..+.++++|+..|.+++..+.
T Consensus 176 ~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~ 205 (314)
T 3ggo_A 176 TPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 205 (314)
T ss_dssp CCCTTSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 332 3556789999999999988776543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=125.87 Aligned_cols=183 Identities=13% Similarity=0.099 Sum_probs=117.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||++||..|+.+ | ++|++||++++.+++.... +... +.++......+...
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~~-----i~~~---~~~~~~~g~~~~~~----- 64 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH-G-----FAVTAYDINTDALDAAKKR-----FEGL---AAVYEKEVAGAADG----- 64 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHHH-----HHHH---HHHHHHHSTTCTTT-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---HHHHHHhcccCCHH-----
Confidence 47999999999999999999999 9 8999999999887654321 1110 00000000000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ++ . +.++..++|+++++++||+||++||++ .++++++++.+++++ +++++++++++
T Consensus 65 --~~--~~-~------------~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~il~s~tS~~ 124 (283)
T 4e12_A 65 --AA--QK-A------------LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPA---KTIFATNSSTL 124 (283)
T ss_dssp --HH--HH-H------------HHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred --HH--HH-H------------HcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 00 00 0 014678899988899999999999998 789999999999888 88999999887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEec-CCh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~-~Di 277 (303)
... .+.+.++.+. .+. -..|..+. ..+....++.. .+.+..+.+.+++..-|..++.. .|.
T Consensus 125 ~~~------------~la~~~~~~~-~~i-g~h~~~p~--~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~ 188 (283)
T 4e12_A 125 LPS------------DLVGYTGRGD-KFL-ALHFANHV--WVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK 188 (283)
T ss_dssp CHH------------HHHHHHSCGG-GEE-EEEECSST--TTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred CHH------------HHHhhcCCCc-ceE-EEccCCCc--ccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 653 2455554332 221 12222221 12222333333 24567888899998888776654 565
Q ss_pred hHH
Q 022050 278 VTH 280 (303)
Q Consensus 278 ~g~ 280 (303)
.|.
T Consensus 189 ~g~ 191 (283)
T 4e12_A 189 AGY 191 (283)
T ss_dssp TTT
T ss_pred CCE
Confidence 544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=132.16 Aligned_cols=216 Identities=16% Similarity=0.094 Sum_probs=138.1
Q ss_pred ccCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhh
Q 022050 13 SSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEH 92 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~ 92 (303)
||.-+-|||+|-.- ....|.+|+|||.|.+|..+|..||+. | ++|+.+|.++++++.+|..
T Consensus 3 ~~~~~~~~~~~~~p------------~~~~m~~IaViGlGYVGLp~A~~~A~~-G-----~~V~g~Did~~kV~~ln~G- 63 (444)
T 3vtf_A 3 SSHHHHHHSSGLVP------------RGSHMASLSVLGLGYVGVVHAVGFALL-G-----HRVVGYDVNPSIVERLRAG- 63 (444)
T ss_dssp ----------CCCC------------TTCCCCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHHHHTT-
T ss_pred cccccccccCCcCC------------CCCCCCEEEEEccCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHHCC-
Confidence 56667788887542 223567999999999999999999999 8 9999999999998876532
Q ss_pred HHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--
Q 022050 93 LFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-- 170 (303)
Q Consensus 93 l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-- 170 (303)
+.|.+.++++. ++.+... -.++++++|..+++.+||++|+|||.
T Consensus 64 ----------------~~pi~Epgl~e-----------ll~~~~~-------~g~l~~tt~~~~ai~~ad~~~I~VpTP~ 109 (444)
T 3vtf_A 64 ----------------RPHIYEPGLEE-----------ALGRALS-------SGRLSFAESAEEAVAATDATFIAVGTPP 109 (444)
T ss_dssp ----------------CCSSCCTTHHH-----------HHHHHHH-------TTCEEECSSHHHHHHTSSEEEECCCCCB
T ss_pred ----------------CCCCCCCCHHH-----------HHHHHHH-------cCCeeEEcCHHHHHhcCCceEEEecCCC
Confidence 13444444321 1111100 03688999999999999999999975
Q ss_pred --------hhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCH-HHHHHhHhCCCCccEEEEeCCCcHHHHh
Q 022050 171 --------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITP-TQMINRATGVPIENILYLGGPNIASEIY 241 (303)
Q Consensus 171 --------~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~v~~GP~~a~ev~ 241 (303)
.++.++.+.|.+++++.-+++ +|..-+.+.+. +.... ..++.+..+. ..+.+.+.|.+..+..
T Consensus 110 ~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~-lVV~eSTVppG-----tte~~~~~~l~~~~~~--~~f~v~~~PErl~eG~ 181 (444)
T 3vtf_A 110 APDGSADLRYVEAAARAVGRGIRAKGRWH-LVVVKSTVPPG-----TTEGLVARAVAEEAGG--VKFSVASNPEFLREGS 181 (444)
T ss_dssp CTTSSBCCHHHHHHHHHHHHHHHHHCSCC-EEEECSCCCTT-----TTTTHHHHHHHTTTTT--CCCEEEECCCCCCTTS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhhcCCCe-EEEEeCCCCCc-----hHHHHHHHHHHHhCCC--CCceeecCcccccCCc
Confidence 268889999999886411134 44455566665 33332 3444444332 3467888998866432
Q ss_pred c----cCceEEEEe-CChhhHHHHHHHhcCCCeEEEecCChhHHHHHHHHHHHH
Q 022050 242 N----KEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 242 ~----g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
. ..+..++.+ .++...+.+.++++.-.-.. ...|+..+|++|.+-|.|
T Consensus 182 a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~-~~~~~~~AE~~Kl~eN~~ 234 (444)
T 3vtf_A 182 ALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPK-LVMKPREAELVKYASNVF 234 (444)
T ss_dssp HHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCE-EEECHHHHHHHHHHHHHH
T ss_pred cccccccCCcEEEcCCCHHHHHHHHHHHhccCCCE-EEechhHHHHHHHHHHHH
Confidence 1 123334444 45556788888887644433 346899999999999986
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=124.41 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=119.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|.||.++|..|++ | ++|++|+|++++.+++.+. +
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~--g-----~~V~~~~~~~~~~~~~~~~------------------------g------ 43 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR--R-----FPTLVWNRTFEKALRHQEE------------------------F------ 43 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT--T-----SCEEEECSSTHHHHHHHHH------------------------H------
T ss_pred CCeEEEEcccHHHHHHHHHHhC--C-----CeEEEEeCCHHHHHHHHHC------------------------C------
Confidence 4799999999999999999986 6 8999999998766532110 1
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+..++ +.++++++|+||++||+.. ++++++++.+.+++ +++|++++++-.
T Consensus 44 -------------------------~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~---~~~vv~~s~~~~ 94 (289)
T 2cvz_A 44 -------------------------GSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATSGEP 94 (289)
T ss_dssp -------------------------CCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSCCCH
T ss_pred -------------------------CcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCC---CCEEEECCCCCH
Confidence 11222 4566789999999999875 88899988887776 778887765432
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g 279 (303)
.. .+.+.+.++.. .+.++..|.+ +.....+... ++.+.+.+..+.++++| ..|++++...|.-.
T Consensus 95 ~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~ 160 (289)
T 2cvz_A 95 EA----------SRRLAERLREK--GVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFL-AYAKKVVHVGPVGA 160 (289)
T ss_dssp HH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGC-TTEEEEEEEESTTH
T ss_pred HH----------HHHHHHHHHHc--CCEEEEecCCCChhHHhhCCeE-EEECCCHHHHHHHHHHH-hhcCCeEEcCCCcH
Confidence 21 12344444321 1223344643 2223344322 23356667889999999 99998877777778
Q ss_pred HHHHHHHHHHH--HHHHHHHhh
Q 022050 280 HEVMGGLKNVY--AIGAGTIYF 299 (303)
Q Consensus 280 ~e~~~~lkNv~--Ai~~G~~~g 299 (303)
..|.+..-|.+ .+..++.+.
T Consensus 161 ~~~~k~~~n~~~~~~~~~~~Ea 182 (289)
T 2cvz_A 161 GHAVKAINNALLAVNLWAAGEG 182 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 88999988986 234455443
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=124.59 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=113.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|++. | ++|++|+|++++++++..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~~~--------------------------------- 41 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH-G-----YPLIIYDVFPDACKEFQD--------------------------------- 41 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHT---------------------------------
T ss_pred CeEEEEeccHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH---------------------------------
Confidence 6899999999999999999998 8 899999999876543110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-chhHHHHHHHHH---HHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-~~~~~~vl~~l~---~~l~~~~~~~iivs~~nG 199 (303)
..+.+++++.++++++|+||++|| ++.+++++.++. +++++ +++|++ ++|
T Consensus 42 ----------------------~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~---~~~vv~-~s~ 95 (296)
T 2gf2_A 42 ----------------------AGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKK---GSLLID-SST 95 (296)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCT---TCEEEE-CSC
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCC---CCEEEE-CCC
Confidence 024455678888889999999995 567888888753 34555 778888 888
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH--hccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev--~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
+.+.. ...+.+.+.+. + ......|-..... ..+. ..++.+.+.+..+.++++|+..|++++...+.
T Consensus 96 ~~~~~-----~~~~~~~~~~~-g-----~~~~~~p~~~g~~~a~~~~-~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~ 163 (296)
T 2gf2_A 96 IDPAV-----SKELAKEVEKM-G-----AVFMDAPVSGGVGAARSGN-LTFMVGGVEDEFAAAQELLGCMGSNVVYCGAV 163 (296)
T ss_dssp CCHHH-----HHHHHHHHHHT-T-----CEEEECCEESHHHHHHHTC-EEEEEESCGGGHHHHHHHHTTTEEEEEEEEST
T ss_pred CCHHH-----HHHHHHHHHHc-C-----CEEEEcCCCCChhHHhcCc-EEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCc
Confidence 87752 11111222221 1 1112223222211 1232 22334566778899999999999988776554
Q ss_pred hHHHHHHHHHHHH
Q 022050 278 VTHEVMGGLKNVY 290 (303)
Q Consensus 278 ~g~e~~~~lkNv~ 290 (303)
-...+.+..-|.+
T Consensus 164 g~~~~~kl~~n~~ 176 (296)
T 2gf2_A 164 GTGQAAKICNNML 176 (296)
T ss_dssp THHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4457777777854
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=128.32 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=108.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+ |.||+++|..|++. | ++|++|+|++++++.+.. .
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~~--------------------------~---- 54 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS-A-----HHLAAIEIAPEGRDRLQG--------------------------M---- 54 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS-S-----SEEEEECCSHHHHHHHHH--------------------------T----
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHh--------------------------c----
Confidence 479999999 99999999999998 8 899999999876543110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+..+ ++.++++++|+||++||++.++++++++.+++++ +++|+++++|..
T Consensus 55 -------------------------g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~---~~ivv~~s~~~~ 105 (286)
T 3c24_A 55 -------------------------GIPLT-DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRP---GTIVLILDAAAP 105 (286)
T ss_dssp -------------------------TCCCC-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEESCSHHH
T ss_pred -------------------------CCCcC-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCC---CCEEEECCCCch
Confidence 01111 3456678999999999999999999999988877 789999888874
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--------HhccCc-------eEEE-EeCChhhHHHHHHHhc
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--------IYNKEY-------ANAR-ICGAEKWRKPLAKFLR 265 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--------v~~g~~-------~~~~-~~~~~~~~~~i~~lf~ 265 (303)
... +.+..+ .. ..+..+|+++.+ ...|.+ ...+ ...+.+..+.++++|+
T Consensus 106 ~~~------------l~~~~~--~~-~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 170 (286)
T 3c24_A 106 YAG------------VMPERA--DI-TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICE 170 (286)
T ss_dssp HHT------------CSCCCT--TS-EEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHH
T ss_pred hHH------------HHhhhC--CC-eEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHH
Confidence 431 222111 11 234477777544 666642 2222 2456678899999999
Q ss_pred CCCe---EEEecC
Q 022050 266 RPHF---TVWDNG 275 (303)
Q Consensus 266 ~~g~---~~~~~~ 275 (303)
..|. +++..+
T Consensus 171 ~~G~~~~~~~~v~ 183 (286)
T 3c24_A 171 TMWSPVTRTHRVT 183 (286)
T ss_dssp HHTCSEEEEEECC
T ss_pred HhcCCcceEEEeC
Confidence 9898 665544
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.7e-14 Score=126.82 Aligned_cols=171 Identities=15% Similarity=0.115 Sum_probs=117.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||+.+|..|++. | ++|++|+ ++++++++...
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~-~~~~~~~~~~~------------------------------ 44 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARA-G-----HQLHVTT-IGPVADELLSL------------------------------ 44 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHT-T-----CEEEECC-SSCCCHHHHTT------------------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEEc-CHHHHHHHHHc------------------------------
Confidence 358999999999999999999998 8 8999999 88765432100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHHH---HHHHHhhccCCCCEEEEee
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFE---EISRYWKERITVPVIISLA 197 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl~---~l~~~l~~~~~~~iivs~~ 197 (303)
.+..++++.++++++|+||+++|... +++++. ++.+.+++ +++|++++
T Consensus 45 -------------------------g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~s 96 (295)
T 1yb4_A 45 -------------------------GAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQ---GKTIVDMS 96 (295)
T ss_dssp -------------------------TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCT---TEEEEECS
T ss_pred -------------------------CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCC---CCEEEECC
Confidence 12234567777889999999997765 788887 77777776 78888888
Q ss_pred ccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH--HhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecC
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e--v~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
+|.... .+.+.+.++.. .+.++..|..... ...+... ++.+++.+..+.++++|+..+++++...
T Consensus 97 ~~~~~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~a~~g~~~-~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 163 (295)
T 1yb4_A 97 SISPIE----------TKRFAQRVNEM--GADYLDAPVSGGEIGAREGTLS-IMVGGEQKVFDRVKPLFDILGKNITLVG 163 (295)
T ss_dssp CCCHHH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCHHH----------HHHHHHHHHHc--CCeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 774321 12344444321 1222334433221 1234322 3345566778899999999999888877
Q ss_pred ChhHHHHHHHHHHHH
Q 022050 276 DLVTHEVMGGLKNVY 290 (303)
Q Consensus 276 Di~g~e~~~~lkNv~ 290 (303)
+.-..+|.+.+-|.+
T Consensus 164 ~~~~~~~~Kl~~n~~ 178 (295)
T 1yb4_A 164 GNGDGQTCKVANQII 178 (295)
T ss_dssp STTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 887889999999976
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=123.74 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=108.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|+||+++|..|+++ |. +++|++|+|++++++.+.. .+.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-g~---~~~V~~~d~~~~~~~~~~~------------------------~g~----- 52 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-HP---HYKIVGYNRSDRSRDIALE------------------------RGI----- 52 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-CT---TSEEEEECSSHHHHHHHHH------------------------TTS-----
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-CC---CcEEEEEcCCHHHHHHHHH------------------------cCC-----
Confidence 58999999999999999999987 51 1689999999876543110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH-hhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~-l~~~~~~~iivs~~nGi~ 201 (303)
....+++++++++++|+||+|||++..+++++++.++ +++ +++|++++++..
T Consensus 53 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~---~~ivi~~~~~~~ 105 (290)
T 3b1f_A 53 ------------------------VDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKE---DVIITDAGSTKY 105 (290)
T ss_dssp ------------------------CSEEESCTTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCT---TCEEECCCSCHH
T ss_pred ------------------------cccccCCHHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCC---CCEEEECCCCch
Confidence 0134566767788999999999999999999999888 876 677775543322
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEE--------EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeE
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFT 270 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~--------v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~ 270 (303)
.. .+.+.+.++.....+. ..+||..+. ++..+.+..++.. .+.+..+.++++|+..|++
T Consensus 106 ~~----------~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~ 175 (290)
T 3b1f_A 106 EI----------VRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHAR 175 (290)
T ss_dssp HH----------HHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCE
T ss_pred HH----------HHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 11 1345555542111111 122555443 4445554444432 4556789999999999999
Q ss_pred EEecCC
Q 022050 271 VWDNGD 276 (303)
Q Consensus 271 ~~~~~D 276 (303)
++..++
T Consensus 176 ~~~~~~ 181 (290)
T 3b1f_A 176 YVEIDA 181 (290)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 876554
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=134.55 Aligned_cols=186 Identities=10% Similarity=0.052 Sum_probs=119.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|++|+|++++++++++++ + + . +.-
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~~-------g---------~--~-~~~------ 50 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKAN-------A---------S--A-PFA------ 50 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHHT-------T---------T--S-TTG------
T ss_pred CEEEEEChHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHhc-------C---------C--C-CCC------
Confidence 7999999999999999999999 8 89999999988776533110 0 0 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~---~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++..+++++++++ ++|+||++||+. .++++++++.+++++ +++||+.+||
T Consensus 51 ----------------------~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iIId~sng 105 (478)
T 1pgj_A 51 ----------------------GNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA 105 (478)
T ss_dssp ----------------------GGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred ----------------------CCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 13566778888776 499999999995 799999999999887 7899999988
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCeE-------
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------- 270 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------- 270 (303)
..... +.+.+.+.... +..+.+|... .....|. . ++.+++.+..+.++.+|+..+.+
T Consensus 106 ~~~~~----------~~l~~~l~~~g--~~~v~~pv~gg~~~a~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~dg~~~ 171 (478)
T 1pgj_A 106 HFKDQ----------GRRAQQLEAAG--LRFLGMGISGGEEGARKGP-A-FFPGGTLSVWEEIRPIVEAAAAKADDGRPC 171 (478)
T ss_dssp CHHHH----------HHHHHHHHTTT--CEEEEEEEESHHHHHHHCC-E-EEEEECHHHHHHHHHHHHHHSCBCTTSCBS
T ss_pred ChHHH----------HHHHHHHHHCC--CeEEEeeccCCHHHHhcCC-e-EeccCCHHHHHHHHHHHHHhcccccCCCee
Confidence 76531 12333332111 1112223221 1222343 2 33455666778888888766655
Q ss_pred EEecCChhHHHHHHHHHHHHH--HHHHHHhh
Q 022050 271 VWDNGDLVTHEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~A--i~~G~~~g 299 (303)
+....+.-...+.+..-|.+. +..++.|.
T Consensus 172 v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea 202 (478)
T 1pgj_A 172 VTMNGSGGAGSCVKMYHNSGEYAILQIWGEV 202 (478)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHhhHHHHHHHHHHHHHHHH
Confidence 333444444457777778542 33455443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=133.95 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=128.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||..+|..|+++ | .+++|++||+++++++.++..+ .+.+.+++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~-g---~G~~V~~~d~~~~~~~~l~~g~-----------------~~i~e~~l~---- 59 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM-C---PEIRVTVVDVNESRINAWNSPT-----------------LPIYEPGLK---- 59 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHHTSSS-----------------CSSCCTTHH----
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHHhCCC-----------------CCcCCCCHH----
Confidence 58999999999999999999987 4 1178999999998877654221 122222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh---------------HHHHHHHHHHHhhcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------TKEVFEEISRYWKER 187 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~---------------~~~vl~~l~~~l~~~ 187 (303)
+.+..+. ..++.+++|+.+++++||+||+|||... +.++++++.+++++
T Consensus 60 -------~~~~~~~--------~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~- 123 (467)
T 2q3e_A 60 -------EVVESCR--------GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNG- 123 (467)
T ss_dssp -------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCS-
T ss_pred -------HHHHHhh--------cCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCC-
Confidence 0000000 0157788999888899999999997643 57888889888876
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc----cCceEEEEeC-----ChhhHH
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-----AEKWRK 258 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~----g~~~~~~~~~-----~~~~~~ 258 (303)
+++||.. +.+.+.+ ...+.+.+.+.. .....+.+..+|.++.+... ..+..++++. +.+..+
T Consensus 124 --g~iVV~~-STv~~g~-----~~~l~~~l~~~~-~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~ 194 (467)
T 2q3e_A 124 --YKIVTEK-STVPVRA-----AESIRRIFDANT-KPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQ 194 (467)
T ss_dssp --EEEEEEC-SCCCTTH-----HHHHHHHHHHTC-CTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHH
T ss_pred --CCEEEEC-CcCCchH-----HHHHHHHHHHhC-CCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHH
Confidence 6666543 3444431 122333343321 11123456788888654321 1232244444 445788
Q ss_pred HHHHHhcCC-CeEEEecCChhHHHHHHHHHHHH
Q 022050 259 PLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVY 290 (303)
Q Consensus 259 ~i~~lf~~~-g~~~~~~~Di~g~e~~~~lkNv~ 290 (303)
.++++|+.. +..++...|+...||.|.+-|.+
T Consensus 195 ~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~ 227 (467)
T 2q3e_A 195 ALCAVYEHWVPREKILTTNTWSSELSKLAANAF 227 (467)
T ss_dssp HHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeEEecCHHHHHHHHHHHHHH
Confidence 999999876 55566677899999999999986
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=135.58 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=122.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|+||+++|..|+++ | ++|++|+|++++++++++. . .++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~~--------~-------------~~~------ 56 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADH-G-----FTVCAYNRTQSKVDHFLAN--------E-------------AKG------ 56 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSHHHHHHHHT--------T-------------TTT------
T ss_pred CCCEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHcc--------c-------------ccC------
Confidence 36899999999999999999999 9 8999999999877643210 0 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.++..++++++++++ +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 57 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 110 (497)
T 2p4q_A 57 -----------------------KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEK---GDIIIDGGN 110 (497)
T ss_dssp -----------------------SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCC---CCEEEECCC
Confidence 035556788887776 9999999999 5899999999999887 789999998
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCC--CcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeE------
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGP--NIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP--~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------ 270 (303)
+..... ....+.+.+ .+. . .+.+| +.+.....|. .++.+++.+..+.++.+|+.-+.+
T Consensus 111 ~~~~~~------~~l~~~l~~-~g~---~--~v~~pVsgg~~~a~~G~--~im~gg~~e~~~~v~~ll~~~g~~~dGe~~ 176 (497)
T 2p4q_A 111 SHFPDS------NRRYEELKK-KGI---L--FVGSGVSGGEEGARYGP--SLMPGGSEEAWPHIKNIFQSISAKSDGEPC 176 (497)
T ss_dssp CCHHHH------HHHHHHHHH-TTC---E--EEEEEEESHHHHHHHCC--EEEEEECGGGHHHHHHHHHHHSCEETTEES
T ss_pred CChhHH------HHHHHHHHH-cCC---c--eeCCCcccChhHhhcCC--eEEecCCHHHHHHHHHHHHHhcCccCCCCc
Confidence 866431 111222222 121 1 12233 2222233443 234456677788888888876665
Q ss_pred EEecCChhHHHHHHHHHHHHH--HHHHHHhh
Q 022050 271 VWDNGDLVTHEVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 271 ~~~~~Di~g~e~~~~lkNv~A--i~~G~~~g 299 (303)
+....+.-...+.|..-|.+. +..+++++
T Consensus 177 v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa 207 (497)
T 2p4q_A 177 CEWVGPAGAGHYVKMVHNGIEYGDMQLICEA 207 (497)
T ss_dssp CCCCEETTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEECCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334467788888863 45566665
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=133.01 Aligned_cols=182 Identities=12% Similarity=0.007 Sum_probs=123.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|+++ | ++|.+|+|++++++++.++ .++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~----------------------~~~------- 50 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR-G-----YTVAIYNRTTSKTEEVFKE----------------------HQD------- 50 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH----------------------TTT-------
T ss_pred CcEEEEeeHHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHHh----------------------CcC-------
Confidence 7899999999999999999999 8 8999999998876542210 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-hhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~---aDlVIiaVp~-~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++..++++++++++ +|+||++||+ +.++++++++.+++++ +++||++++|
T Consensus 51 ----------------------~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~---g~iiId~s~~ 105 (474)
T 2iz1_A 51 ----------------------KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDI---GDILIDGGNT 105 (474)
T ss_dssp ----------------------SCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCT---TCEEEECSCC
T ss_pred ----------------------CCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 135566788887765 9999999999 5799999999998887 7899999888
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeE-------
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFT------- 270 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~------- 270 (303)
..... +.+.+.+.... +..+.+|.... ....|. . ++.+++.+..+.++.+|+.-+.+
T Consensus 106 ~~~~~----------~~l~~~l~~~g--~~~v~~pv~gg~~~a~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~~dge~ 171 (474)
T 2iz1_A 106 HFPDT----------MRRNAELADSG--INFIGTGVSGGEKGALLGP-S-MMPGGQKEAYDLVAPIFEQIAAKAPQDGKP 171 (474)
T ss_dssp CHHHH----------HHHHHHTTTSS--CEEEEEEECSHHHHHHHCC-C-EEEEECHHHHHHHHHHHHHHSCBCTTTCCB
T ss_pred CHHHH----------HHHHHHHHHCC--CeEECCCCCCChhhhccCC-e-EEecCCHHHHHHHHHHHHHHhcccccCCCc
Confidence 75431 22444443211 22334444322 223443 3 33455667778888888766655
Q ss_pred -EEecCChhHHHHHHHHHHHH--HHHHHHHhh
Q 022050 271 -VWDNGDLVTHEVMGGLKNVY--AIGAGTIYF 299 (303)
Q Consensus 271 -~~~~~Di~g~e~~~~lkNv~--Ai~~G~~~g 299 (303)
+....+.-...|.|..-|.+ .+..++.+.
T Consensus 172 ~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa 203 (474)
T 2iz1_A 172 CVAYMGANGAGHYVKMVHNGIEYGDMQLIAES 203 (474)
T ss_dssp SBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444557778888876 345556555
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=127.16 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=119.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||..+|..|+++ | ++|++|+|++++++++.+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~-G-----~~V~v~dr~~~~~~~l~~~------------------------------- 64 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG-G-----HECVVYDLNVNAVQALERE------------------------------- 64 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTT-------------------------------
T ss_pred CCEEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHHC-------------------------------
Confidence 48999999999999999999999 9 8999999998766532110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC---CEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA---DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~a---DlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+..+++++++++++ |+||++||+..++++++++.+.+++ +++||+.+++
T Consensus 65 ------------------------g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~---g~iiId~st~ 117 (358)
T 4e21_A 65 ------------------------GIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMTPLLAA---NDIVIDGGNS 117 (358)
T ss_dssp ------------------------TCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECSSC
T ss_pred ------------------------CCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 233456778888888 9999999999999999999998887 7888887766
Q ss_pred CccccccccccCCHHHHHHhHh-CCCCc--cEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCC--------
Q 022050 200 VEAELEAVPRIITPTQMINRAT-GVPIE--NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH-------- 268 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l-~~~~~--~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g-------- 268 (303)
..... +.+.+.+ ....+ ..-+..||..+. .|. .++++++.+..+.++.+|+.-+
T Consensus 118 ~~~~~----------~~~~~~l~~~g~~~vdapVsGg~~~a~---~G~--~im~GG~~~a~~~~~~ll~~lg~~~~~~~~ 182 (358)
T 4e21_A 118 HYQDD----------IRRADQMRAQGITYVDVGTSGGIFGLE---RGY--CLMIGGEKQAVERLDPVFRTLAPGIGAAPR 182 (358)
T ss_dssp CHHHH----------HHHHHHHHTTTCEEEEEEEECGGGHHH---HCC--EEEEESCHHHHHHTHHHHHHHSCCGGGSCC
T ss_pred ChHHH----------HHHHHHHHHCCCEEEeCCCCCCHHHHh---cCC--eeeecCCHHHHHHHHHHHHHhccccccCcc
Confidence 43321 1122222 11111 112333443332 343 3445667766677777766444
Q ss_pred ------------eEEEecCChhHHHHHHHHHHH--HHHHHHHHhhh
Q 022050 269 ------------FTVWDNGDLVTHEVMGGLKNV--YAIGAGTIYFL 300 (303)
Q Consensus 269 ------------~~~~~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl 300 (303)
-.+....+.-.-++.+.+-|. ++..+++++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~ 228 (358)
T 4e21_A 183 TPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGL 228 (358)
T ss_dssp CTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444556677888999885 44555666654
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=116.77 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=112.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||.+++..|++. | ++|++|+|++++.+++. ..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~-g-----~~V~~~~r~~~~~~~~~------------------------~~------ 70 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGS-G-----FKVVVGSRNPKRTARLF------------------------PS------ 70 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSHHHHHHHS------------------------BT------
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH------------------------Hc------
Confidence 358999999999999999999998 8 89999999976543210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++..+ ++.++++++|+||+++|++.++++++ +.+++ + +++++++++|+.
T Consensus 71 -------------------------g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~-l~~~~-~---~~~vv~~s~g~~ 119 (215)
T 2vns_A 71 -------------------------AAQVT-FQEEAVSSPEVIFVAVFREHYSSLCS-LSDQL-A---GKILVDVSNPTE 119 (215)
T ss_dssp -------------------------TSEEE-EHHHHTTSCSEEEECSCGGGSGGGGG-GHHHH-T---TCEEEECCCCCH
T ss_pred -------------------------CCcee-cHHHHHhCCCEEEECCChHHHHHHHH-HHHhc-C---CCEEEEeCCCcc
Confidence 23333 57777889999999999988777775 66666 4 789999999987
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHh----ccCceEEEEeCChhhHHHHHHHhcCCCeEEEecC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIY----NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~----~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.... .......+++.+.++. .++ +... |+ +.... .+.+.....+.+.+..+.++++|+..|++++...
T Consensus 120 ~~~l--~~~~~~~~~l~~~l~~--~~v-v~~~-n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g 193 (215)
T 2vns_A 120 QEHL--QHRESNAEYLASLFPT--CTV-VKAF-NVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMG 193 (215)
T ss_dssp HHHH--HCSSCHHHHHHHHCTT--SEE-EEEC-TTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECC
T ss_pred cccc--cccccHHHHHHHHCCC--CeE-Eecc-ccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeec
Confidence 6421 1123456777777753 222 2222 22 11112 2222223335567788999999999999999888
Q ss_pred Chh
Q 022050 276 DLV 278 (303)
Q Consensus 276 Di~ 278 (303)
++-
T Consensus 194 ~~~ 196 (215)
T 2vns_A 194 SLA 196 (215)
T ss_dssp SGG
T ss_pred chh
Confidence 764
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-12 Score=125.97 Aligned_cols=178 Identities=10% Similarity=0.047 Sum_probs=113.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||+.||..|+++ | ++|++||+++++......+.+....+ .. .+...
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~a~~~i~~~l~~~~~-----------~G-~l~~~----- 110 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA-G-----IETFLVVRNEQRCKQELEVMYAREKS-----------FK-RLNDK----- 110 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHHHHHHHH-----------TT-SCCHH-----
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECcHHHHHHHHHHHHHHHHH-----------cC-CCCHH-----
Confidence 47999999999999999999999 9 99999999987322100011100111 00 01000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+. +..+.++++++|++ ++++||+||+|||+. .+++++++|.+++++ +++|+|+++++
T Consensus 111 -------~~----------~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~aIlasnTSsl 169 (460)
T 3k6j_A 111 -------RI----------EKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS---TCIFGTNTSSL 169 (460)
T ss_dssp -------HH----------HHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSSS
T ss_pred -------HH----------HHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CCEEEecCCCh
Confidence 00 00013688889985 689999999999985 578899999999988 89999999887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..|. .+.. ..|..+.. ......++.+ .+++..+.+..+++.-|..++...|..
T Consensus 170 ~i~------------~ia~~~~~p~-r~iG-~HffnPv~--~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~p 233 (460)
T 3k6j_A 170 DLN------------EISSVLRDPS-NLVG-IHFFNPAN--VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCK 233 (460)
T ss_dssp CHH------------HHHTTSSSGG-GEEE-EECCSSTT--TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCC
T ss_pred hHH------------HHHHhccCCc-ceEE-EEecchhh--hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 764 2444444331 2211 11211211 1112223333 356678888899988888887777766
Q ss_pred HH
Q 022050 279 TH 280 (303)
Q Consensus 279 g~ 280 (303)
|-
T Consensus 234 Gf 235 (460)
T 3k6j_A 234 SF 235 (460)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=120.36 Aligned_cols=185 Identities=12% Similarity=0.007 Sum_probs=121.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+|||+|||+|.||.++|..|+++ |. ++|++|+|+++..++... ..+ .+..
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~-G~----~~V~~~dr~~~~~~~~~~-----~~~--------------~~~~------ 73 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR-NA----ARLAAYDLRFNDPAASGA-----LRA--------------RAAE------ 73 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECGGGGCTTTHHH-----HHH--------------HHHH------
T ss_pred CCeEEEECccHHHHHHHHHHHHc-CC----CeEEEEeCCCccccchHH-----HHH--------------HHHH------
Confidence 48999999999999999999998 71 689999999843322110 000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+ ++ ++.+++++||+||++||+....+.++++.+.+++ +++||+.+ ++.
T Consensus 74 -----------------------~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~---~~ivv~~s-t~~ 124 (317)
T 4ezb_A 74 -----------------------LGV--EPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSD---EAVFIDLN-SVG 124 (317)
T ss_dssp -----------------------TTC--EEESSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCT---TCEEEECC-SCC
T ss_pred -----------------------CCC--CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCC---CCEEEECC-CCC
Confidence 023 34 6778889999999999999888888899888877 77887765 444
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC-hhHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-LVTH 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D-i~g~ 280 (303)
+.+ ...+.+.+.+. +.. .--.-++||..+. .+... ++++++.+ +.++.+|+.-+.+++...+ +-..
T Consensus 125 p~~-----~~~~~~~l~~~-g~~-~~d~pv~g~~~a~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~v~~~g~~~g~a 191 (317)
T 4ezb_A 125 PDT-----KALAAGAIATG-KGS-FVEGAVMARVPPY---AEKVP-ILVAGRRA--VEVAERLNALGMNLEAVGETPGQA 191 (317)
T ss_dssp HHH-----HHHHHHHHHTS-SCE-EEEEEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEEEESSTTHH
T ss_pred HHH-----HHHHHHHHHHc-CCe-EEeccCCCCchhh---cCCEE-EEEeCChH--HHHHHHHHHhCCCeEEeCCCcCHH
Confidence 431 11222222221 111 0013467876543 33333 33444444 8889999988988877665 8999
Q ss_pred HHHHHHHHHHH--HHHHHHhh
Q 022050 281 EVMGGLKNVYA--IGAGTIYF 299 (303)
Q Consensus 281 e~~~~lkNv~A--i~~G~~~g 299 (303)
++.|..-|.+. ..+++.|.
T Consensus 192 ~~~Kl~~N~~~~~~~~~~~E~ 212 (317)
T 4ezb_A 192 SSLKMIRSVMIKGVEALLIEA 212 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999864 33444443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=120.21 Aligned_cols=161 Identities=20% Similarity=0.198 Sum_probs=106.6
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+||| +|+||+++|..|++. | ++|++|+|+++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~-G-----~~V~~~~~~~~~------------------------------------- 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWA------------------------------------- 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGG-------------------------------------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhC-C-----CeEEEEECCccc-------------------------------------
Confidence 46999999 999999999999998 8 899999987531
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++.+++++||+||+|||++.+.++++++.+++++ +++|+. ..|+.
T Consensus 58 -------------------------------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~~-~~svk 102 (298)
T 2pv7_A 58 -------------------------------VAESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLAD-LTSVK 102 (298)
T ss_dssp -------------------------------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEE-CCSCC
T ss_pred -------------------------------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCC---CcEEEE-CCCCC
Confidence 1234567899999999999999999999988877 665554 44443
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCChhHHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di~g~e 281 (303)
.. ..+.+.+.++....+..-+.||.. +...+.+..++...+.+..+.++++|+..|++++..++....+
T Consensus 103 ~~---------~~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~ 171 (298)
T 2pv7_A 103 RE---------PLAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDH 171 (298)
T ss_dssp HH---------HHHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred cH---------HHHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHH
Confidence 32 112233333211000112345554 2334544333333356678899999999999988766555455
Q ss_pred HHHH---HHHHHHH
Q 022050 282 VMGG---LKNVYAI 292 (303)
Q Consensus 282 ~~~~---lkNv~Ai 292 (303)
+.+. +..++|+
T Consensus 172 ~~a~~~~~p~~~a~ 185 (298)
T 2pv7_A 172 NMTYIQALRHFSTF 185 (298)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 5544 4444433
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-14 Score=126.64 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=112.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|+||.++|..|++. | ++|++|+|+++ .+.+ ..
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~-~~~~--------------------------~~------ 59 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQC-G-----YSVVFGSRNPQ-VSSL--------------------------LP------ 59 (201)
Confidence 37899999999999999999998 8 89999999875 3210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..+.++ ++.++++++|+||++||++.+++++ ++.+.. + +++||++++|+..
T Consensus 60 -----------------------~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~-~l~~~~-~---~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 60 -----------------------RGAEVL-CYSEAASRSDVIVLAVHREHYDFLA-ELADSL-K---GRVLIDVSNNQKM 110 (201)
Confidence 012233 4556778999999999999888887 565543 3 6799999999964
Q ss_pred ccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhc-cCc----eEEEEeCChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KEY----ANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 203 ~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~-g~~----~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
... ...-.+.+.+.++.. .++..+|+++..... |.. ..++.+.+.+..+.+..+|+..|++++...++
T Consensus 111 ~~~----~~~~~~~l~~~~~~~---~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l 183 (201)
T 2yjz_A 111 NQY----PESNAEYLAQLVPGA---HVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSL 183 (201)
Confidence 210 000123466666431 356788888776654 321 11223445567889999999999998876665
Q ss_pred hHHHH
Q 022050 278 VTHEV 282 (303)
Q Consensus 278 ~g~e~ 282 (303)
-...|
T Consensus 184 ~~a~~ 188 (201)
T 2yjz_A 184 VAAKE 188 (201)
Confidence 43333
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-11 Score=111.82 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=107.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec--CCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+||+++|..|+++ | ++|++|+| +++.++++ ...
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~~~~~~~~--------------------------~~~---- 44 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIERA--------------------------RTV---- 44 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHHH--------------------------HHH----
T ss_pred CeEEEEechHHHHHHHHHHHHC-C-----CeEEEeCCccCHHHHHHH--------------------------HHC----
Confidence 6999999999999999999998 8 89999988 33332211 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+. +++.++++++|+||++||++...+.+.++.+.++ + ++++. +++.
T Consensus 45 -------------------------g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~~----~-~vi~~-s~~~ 91 (264)
T 1i36_A 45 -------------------------GVT--ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR----G-IYVDI-NNIS 91 (264)
T ss_dssp -------------------------TCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC----S-EEEEC-SCCC
T ss_pred -------------------------CCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhcC----c-EEEEc-cCCC
Confidence 123 4566778899999999999865555566665443 4 55554 5655
Q ss_pred cccccccccCCHHHHHHhHhCCCCc-cEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEe-cCChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIE-NILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~-~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~-~~Di~g 279 (303)
+.. .+.+.+.++.... ..-+..+| .....|.+ ++.+++.. +.+++ |+..|.+++. .+++-.
T Consensus 92 ~~~---------~~~l~~~~~~~g~~~~~v~~~~---~~~~~g~~--~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~ 154 (264)
T 1i36_A 92 PET---------VRMASSLIEKGGFVDAAIMGSV---RRKGADIR--IIASGRDA--EEFMK-LNRYGLNIEVRGREPGD 154 (264)
T ss_dssp HHH---------HHHHHHHCSSSEEEEEEECSCH---HHHGGGCE--EEEESTTH--HHHHG-GGGGTCEEEECSSSTTH
T ss_pred HHH---------HHHHHHHHhhCCeeeeeeeCCc---cccccCCe--EEecCCcH--HHhhh-HHHcCCeeEECCCCcCH
Confidence 431 1345666643210 11122333 23334544 33344333 78888 9988988655 444788
Q ss_pred HHHHHHHHHHH--HHHHHHHhh
Q 022050 280 HEVMGGLKNVY--AIGAGTIYF 299 (303)
Q Consensus 280 ~e~~~~lkNv~--Ai~~G~~~g 299 (303)
.+|.+..-|.+ .+..++.+.
T Consensus 155 ~~~~kl~~n~~~~~~~~~~~Ea 176 (264)
T 1i36_A 155 ASAIKMLRSSYTKGVSALLWET 176 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999976 344555554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=127.33 Aligned_cols=188 Identities=14% Similarity=0.066 Sum_probs=121.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||.++|..|+++ | ++|++|+|++++++.+.+++ ..+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~g---------------------~~g----- 50 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLANE---------------------AKG----- 50 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHTT---------------------TTT-----
T ss_pred CCCEEEEEChhHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHhcc---------------------cCC-----
Confidence 458999999999999999999999 9 89999999998776432110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~---~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.++..+++++++++ ++|+||++||+. .++++++++.+++++ +++||...
T Consensus 51 ------------------------~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~---g~iIId~s 103 (484)
T 4gwg_A 51 ------------------------TKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDT---GDIIIDGG 103 (484)
T ss_dssp ------------------------SSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCT---TCEEEECS
T ss_pred ------------------------CceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCC---CCEEEEcC
Confidence 13455677888765 599999999995 899999999999987 78999888
Q ss_pred ccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEE------
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV------ 271 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~------ 271 (303)
++....+ ....+.+.+ .+......-+..||..+ ..|. .++++++.+..+.++.+|+.-+.++
T Consensus 104 t~~~~~t------~~~~~~l~~-~Gi~fvd~pVsGg~~gA---~~G~--~im~GG~~ea~~~v~pll~~ig~~v~~~~~~ 171 (484)
T 4gwg_A 104 NSEYRDT------TRRCRDLKA-KGILFVGSGVSGGEEGA---RYGP--SLMPGGNKEAWPHIKTIFQGIAAKVGTGEPC 171 (484)
T ss_dssp CCCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHH---HHCC--EEEEEECGGGHHHHHHHHHHHSCBCTTSCBS
T ss_pred CCCchHH------HHHHHHHHh-hccccccCCccCCHHHH---hcCC--eeecCCCHHHHHHHHHHHHHhcCcccCCCce
Confidence 7765431 111122222 12110011122233222 2343 3345566777788888887544433
Q ss_pred -EecCChhHHHHHHHHHHH--HHHHHHHHhhh
Q 022050 272 -WDNGDLVTHEVMGGLKNV--YAIGAGTIYFL 300 (303)
Q Consensus 272 -~~~~Di~g~e~~~~lkNv--~Ai~~G~~~gl 300 (303)
....+.=..+..|..-|. |+...+++|++
T Consensus 172 ~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~ 203 (484)
T 4gwg_A 172 CDWVGDEGAGHFVKMVHNGIEYGDMQLICEAY 203 (484)
T ss_dssp BCCCEETTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334445788888887 44556666654
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-12 Score=121.59 Aligned_cols=174 Identities=18% Similarity=0.186 Sum_probs=116.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.||+++|..|+.. | ++|++|+|+++...+ ....
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~-G-----~~V~~~~~~~~~~~~-------------------------~a~~------ 58 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVA-------------------------KAEA------ 58 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHH-------------------------HHHH------
T ss_pred CCEEEEECchHHHHHHHHHHHHC-c-----CEEEEEECChHHHHH-------------------------HHHH------
Confidence 37899999999999999999998 8 899999998754211 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.++ ++.+++++||+||++||++...++++ ++.+++++ +++|+++ +|+.
T Consensus 59 -----------------------~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~---~~ivi~~-~gv~ 110 (338)
T 1np3_A 59 -----------------------HGLKVA-DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GATLAFA-HGFS 110 (338)
T ss_dssp -----------------------TTCEEE-CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCEEEES-CCHH
T ss_pred -----------------------CCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCC---CCEEEEc-CCch
Confidence 023344 77788899999999999999999998 99888887 7777754 5654
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEE---eCCCcHH-HHhc---cCceEEEEe--CChhhHHHHHHHhcCCCe-E-
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYL---GGPNIAS-EIYN---KEYANARIC--GAEKWRKPLAKFLRRPHF-T- 270 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~---~GP~~a~-ev~~---g~~~~~~~~--~~~~~~~~i~~lf~~~g~-~- 270 (303)
.. +.+........ .+. .||.++. ++.. |.+..++.. .+.+..+.+.++++..|. +
T Consensus 111 ~~-------------~~~~~~~~~~~-vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~a 176 (338)
T 1np3_A 111 IH-------------YNQVVPRADLD-VIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRT 176 (338)
T ss_dssp HH-------------TTSSCCCTTCE-EEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHH
T ss_pred hH-------------HHhhcCCCCcE-EEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 31 11211111111 122 5666643 3443 777665442 344567788888887777 3
Q ss_pred -EEec-------CChhHH--HHHHHHHHHHHHHHH
Q 022050 271 -VWDN-------GDLVTH--EVMGGLKNVYAIGAG 295 (303)
Q Consensus 271 -~~~~-------~Di~g~--e~~~~lkNv~Ai~~G 295 (303)
+... .|..+. -+||.+.+++|.+..
T Consensus 177 gv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e 211 (338)
T 1np3_A 177 GIIETTFKDETETDLFGEQAVLCGGCVELVKAGFE 211 (338)
T ss_dssp CEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred ceEeechhcccchHHHHHHHHHhhhHHHHHHHHHH
Confidence 3332 234553 388899999988763
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=125.22 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=115.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||++||..|+++ | ++|++||++++.+++..+. +... +.+..+... +...
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~l~~~~~~-----i~~~---l~~~~~~g~-~~~~----- 64 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH-G-----HQVLLYDISAEALTRAIDG-----IHAR---LNSRVTRGK-LTAE----- 64 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHHH-----HHHH---HHTTTTTTS-SCHH-----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---HHHHHHcCC-CCHH-----
Confidence 47999999999999999999999 9 8999999999887764321 1110 000000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+. +..+.+++.++|++ ++++||+||+|||+. .++++++++.+++++ +++++|+++++
T Consensus 65 -------~~----------~~~~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~~IlasntSti 123 (483)
T 3mog_A 65 -------TC----------ERTLKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPP---QTLLTTNTSSI 123 (483)
T ss_dssp -------HH----------HHHHHTEEEECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred -------HH----------HHHHhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhcc---CcEEEecCCCC
Confidence 00 00012678888885 689999999999998 568899999999988 78888999988
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCChh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di~ 278 (303)
... .+.+.+..+. .+ +-..|..+..+. ....++.+ .+.+..+.+..+++.-|..++...|..
T Consensus 124 ~i~------------~ia~~~~~p~-~~-ig~hf~~Pa~v~--~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~ 187 (483)
T 3mog_A 124 SIT------------AIAAEIKNPE-RV-AGLHFFNPAPVM--KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP 187 (483)
T ss_dssp CHH------------HHTTTSSSGG-GE-EEEEECSSTTTC--CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CHH------------HHHHHccCcc-ce-EEeeecChhhhC--CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 764 2444443321 22 222222222222 12222333 256678888888888887776656655
Q ss_pred H
Q 022050 279 T 279 (303)
Q Consensus 279 g 279 (303)
|
T Consensus 188 G 188 (483)
T 3mog_A 188 G 188 (483)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-12 Score=129.92 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=111.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||+.||..++.+ | ++|+++|++++.+++... .+...+... .... .....
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~a-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~-------~~~~-~~~~~----- 375 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKK-IITFTLEKE-------ASRA-HQNGQ----- 375 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHH-HHHHHHHHH-------HHHH-HTTTC-----
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CchhcccchHhhhhhHHH-HHHHHHHHH-------HHhc-cccch-----
Confidence 47999999999999999999999 9 999999999988775432 111111110 0000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+.....+..+++.++ +.+||+||+||++. .+++++++|..++++ ++++.|+|+++
T Consensus 376 -------------------~~~~~~~~~~~~~~~-l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~---~aIlASNTSsl 432 (742)
T 3zwc_A 376 -------------------ASAKPKLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSAL 432 (742)
T ss_dssp -------------------CCCCCCEEEESCGGG-GGSCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred -------------------hhhhhhhcccCcHHH-HhhCCEEEEeccccHHHHHHHHHHHhhcCCC---CceEEecCCcC
Confidence 111236788888764 78999999999997 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCc---cEEEEeCCCcHHHHh
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIE---NILYLGGPNIASEIY 241 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~---~~~v~~GP~~a~ev~ 241 (303)
.++.+ ......|++++.-||..|.+ -+.++.|+.|..++.
T Consensus 433 ~i~~i-a~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~ 475 (742)
T 3zwc_A 433 NVDDI-ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTI 475 (742)
T ss_dssp CHHHH-HTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHH
T ss_pred ChHHH-HhhcCCccccccccccCCCCCCceEEEecCCCCCHHHH
Confidence 98643 22456777777777765532 257888888877654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.36 E-value=7e-12 Score=116.10 Aligned_cols=156 Identities=19% Similarity=0.185 Sum_probs=104.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||+.||..|+ + | ++|++||++++.+++..+. +..
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-a-G-----~~V~v~d~~~~~~~~~~~~----------------------l~~------ 56 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-S-K-----HEVVLQDVSEKALEAAREQ----------------------IPE------ 56 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHH----------------------SCG------
T ss_pred CCeEEEEeeCHHHHHHHHHHH-c-C-----CEEEEEECCHHHHHHHHHH----------------------HHH------
Confidence 489999999999999999999 9 9 8999999999876542210 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+.+++.++|+++ +++||+||+++|+.. ++.++.++.++ + ++++++.++++
T Consensus 57 --------------------~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~---~~IlasntSti 110 (293)
T 1zej_A 57 --------------------ELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--T---NAPLCSNTSVI 110 (293)
T ss_dssp --------------------GGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--C---CSCEEECCSSS
T ss_pred --------------------HHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--C---CCEEEEECCCc
Confidence 00124777788875 789999999999985 67788888776 5 78888888887
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEE--EEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCC
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~--v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.++ .+.+.+..+. .+. -...|- ..+....++.+ .+++..+.+..++..-|-.++...|
T Consensus 111 ~~~------------~~a~~~~~~~-r~~G~Hf~~Pv-----~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d 172 (293)
T 1zej_A 111 SVD------------DIAERLDSPS-RFLGVHWMNPP-----HVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKG 172 (293)
T ss_dssp CHH------------HHHTTSSCGG-GEEEEEECSST-----TTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHH------------HHHHHhhccc-ceEeEEecCcc-----ccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEecc
Confidence 764 2333333221 111 111232 12222333333 3667788888888888877665445
Q ss_pred h
Q 022050 277 L 277 (303)
Q Consensus 277 i 277 (303)
.
T Consensus 173 ~ 173 (293)
T 1zej_A 173 Q 173 (293)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=113.91 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=99.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.||.++|..|++. | ++|++|+|++++++++.+ .
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~~--------------------------~---- 51 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQ-G-----KRVAIWNRSPGKAAALVA--------------------------A---- 51 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH--------------------------H----
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH--------------------------C----
Confidence 458999999999999999999999 8 899999999876653210 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH--HHHHHhhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE--EISRYWKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~--~l~~~l~~~~~~~iivs~~n 198 (303)
....++++.++++++|+||++||.. .+++++. .+... .+ +++||.++.
T Consensus 52 -------------------------g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~-~~---g~ivid~st 102 (306)
T 3l6d_A 52 -------------------------GAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARA-LA---HRTIVDYTT 102 (306)
T ss_dssp -------------------------TCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHH-TT---TCEEEECCC
T ss_pred -------------------------CCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhc-cC---CCEEEECCC
Confidence 2345577888889999999999976 4888886 66554 44 677776653
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcH--HHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEec
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a--~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
+.+.. .+.+.+.+.... +..+.+|-.. .....+.. .+..+++.+..++++.+|+.-+-+++..
T Consensus 103 -~~~~~---------~~~l~~~~~~~g--~~~vdapv~g~~~~~~~~~~-~i~~gg~~~~~~~~~~ll~~lg~~~~~~ 167 (306)
T 3l6d_A 103 -NAQDE---------GLALQGLVNQAG--GHYVKGMIVAYPRNVGHRES-HSIHTGDREAFEQHRALLEGLAGHTVFL 167 (306)
T ss_dssp -CCTTH---------HHHHHHHHHHTT--CEEEEEEEESCGGGTTCTTC-EEEEEECHHHHHHHHHHHHTTCSEEEEC
T ss_pred -CCHHH---------HHHHHHHHHHcC--CeEEecccccCcccccCCce-EEEEcCCHHHHHHHHHHHHHhcCCEEEe
Confidence 33321 122322221001 1112222221 11222222 2344567778899999999874466554
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=116.92 Aligned_cols=155 Identities=13% Similarity=0.121 Sum_probs=96.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++||+|||+|.||+.||..|+.+ | ++|++||++++.+++.... +... +.+... .+. +
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~~~~~-----~g~---~ 93 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKKI-----ITFT---LEKEAS-----RAH---Q 93 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHHH-----HHHH---HHHHHH-----HHH---H
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHH---HHHHHH-----cCC---C
Confidence 357999999999999999999999 9 8999999999877654321 1100 000000 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
..... ......+++|+ +++++||+||+|||+. .++++++++.+++++ +++|++++++
T Consensus 94 ~~~~~-----------------~~~~~~i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~---~~ii~snTs~ 152 (463)
T 1zcj_A 94 NGQAS-----------------AKPKLRFSSST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSA 152 (463)
T ss_dssp TTCCC-----------------CCCCEEEESCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSS
T ss_pred CHHHH-----------------HHHHhhhcCCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCC
Confidence 00000 00124457777 4688999999999997 368899999999887 8999998888
Q ss_pred CccccccccccCCHHHHHHhHhCCCC---ccEEEEeCCCcHHHH
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPI---ENILYLGGPNIASEI 240 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~---~~~~v~~GP~~a~ev 240 (303)
+....+ ......+++++..|+..|. ..+.++.||.+..+.
T Consensus 153 ~~~~~l-a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~ 195 (463)
T 1zcj_A 153 LNVDDI-ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTT 195 (463)
T ss_dssp SCHHHH-HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHH
T ss_pred cCHHHH-HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHH
Confidence 766421 0112223333333332221 124566666665544
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=125.94 Aligned_cols=178 Identities=14% Similarity=0.158 Sum_probs=110.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
++||+|||+|.||+.||..|+.+ | ++|++||++++.+++.... +... +.+..+.. .+...
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~~~~~~G-~~~~~----- 371 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS-N-----YPVILKEVNEKFLEAGIGR-----VKAN---LQSRVRKG-SMSQE----- 371 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH-----HHHH---HHHTTC-----CTT-----
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-----HHHH---HHHHHhcC-CCCHH-----
Confidence 57899999999999999999999 9 9999999999877653211 1110 00000000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+. +..+.+++.++|+ +++++||+||+|||+.. ++++++++.+++++ +++++++++++
T Consensus 372 -------~~----------~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~---~~IlasntStl 430 (725)
T 2wtb_A 372 -------KF----------EKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQ---HCILASNTSTI 430 (725)
T ss_dssp -------HH----------HHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred -------HH----------HHHhcceEEeCCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEeCCCCC
Confidence 00 0012368888888 57899999999999985 78899999999988 78888999888
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEE--EEeCCCcHHHHhccCc-eEEEEe--CChhhHHHHHHHhcCCCeEEEecC
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEY-ANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~--v~~GP~~a~ev~~g~~-~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
.... +.+.+..+. .+. -...|. ...+ ..++.+ .+++..+.+..++..-|..++...
T Consensus 431 ~i~~------------la~~~~~p~-~~iG~hf~~P~------~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~ 491 (725)
T 2wtb_A 431 DLNK------------IGERTKSQD-RIVGAHFFSPA------HIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVG 491 (725)
T ss_dssp CHHH------------HTTTCSCTT-TEEEEEECSST------TTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHH------------HHHHhcCCC-CEEEecCCCCc------ccCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEEC
Confidence 7642 333332221 111 111121 1122 222222 255667777788877777666555
Q ss_pred ChhHH
Q 022050 276 DLVTH 280 (303)
Q Consensus 276 Di~g~ 280 (303)
|..|.
T Consensus 492 d~~Gf 496 (725)
T 2wtb_A 492 NCTGF 496 (725)
T ss_dssp SSTTT
T ss_pred CCccH
Confidence 55443
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-13 Score=122.39 Aligned_cols=177 Identities=14% Similarity=0.047 Sum_probs=98.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|+||.+++..|+++ ++| .+|+|++++++++.. .+
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~-------------------------~~---- 45 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAE-------------------------VY---- 45 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHH-------------------------HT----
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHH-------------------------Hc----
Confidence 37999999999999999988754 578 599999876543210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+. .+++++++++++|+||+|||++.+.++++++. .+ +++|++++.++.
T Consensus 46 -------------------------g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l~---~~---~~ivi~~s~~~~ 93 (276)
T 2i76_A 46 -------------------------GG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLS 93 (276)
T ss_dssp -------------------------CC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSC
T ss_pred -------------------------CC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHhc---cC---CCEEEECCCCCc
Confidence 11 23455556678999999999999999988775 34 678888776655
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE-ecC-ChhH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW-DNG-DLVT 279 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~-~~~-Di~g 279 (303)
.+. +.+.+....++...++||....+...+.+. ....+++..+.++.+|+.-|.+++ +.+ +...
T Consensus 94 ~~~------------l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~ 159 (276)
T 2i76_A 94 SEI------------FKKSGRASIHPNFSFSSLEKALEMKDQIVF--GLEGDERGLPIVKKIAEEISGKYFVIPSEKKKA 159 (276)
T ss_dssp GGG------------GCSSSEEEEEECSCC--CTTGGGCGGGCCE--EECCCTTTHHHHHHHHHHHCSCEEECCGGGHHH
T ss_pred HHH------------HHHhhccccchhhhcCCCchhHHHhCCCeE--EEEeChHHHHHHHHHHHHhCCCEEEECHHHHHH
Confidence 531 222111001222223443333222233322 234445557777777776665443 332 3222
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhc
Q 022050 280 -----HEVMGGLKNVYAIGAGTIYFLV 301 (303)
Q Consensus 280 -----~e~~~~lkNv~Ai~~G~~~gl~ 301 (303)
.-.+-.+.++++.+..++...+
T Consensus 160 ~~~~~~l~~n~~~~~~~~a~~~~~~~G 186 (276)
T 2i76_A 160 YHLAAVIASNFPVALAYLSKRIYTLLG 186 (276)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222346778888777766544
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=123.65 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=111.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||+.||..|+.+ | ++|++||++++.+++.... +... +.+..+.. .+...+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-----i~~~---l~~~~~~G-~~~~~~--- 374 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLAE-----AAKL---LVGRVDKG-RMTPAK--- 374 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH-----HHHH---HHHHHTTT-SSCHHH---
T ss_pred cCCEEEEECCChhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-----HHHH---HHHHHhcC-CCCHHH---
Confidence 468999999999999999999999 9 8999999999877642210 1110 11000000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--HHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~--~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++ .+.++++++|+ +++++||+||+|||+.. ++++++++.+++++ +++++|++++
T Consensus 375 ------~~~-------------~~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~---~~IlasntSt 431 (715)
T 1wdk_A 375 ------MAE-------------VLNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 431 (715)
T ss_dssp ------HHH-------------HHHHEEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ------HHH-------------HhcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCC
Confidence 000 00147778888 67899999999999874 78899999998887 7899999988
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEecCCh
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~~~Di 277 (303)
++... +.+.+..+. .+.. ..|..+.. .+....++.+ .+++..+.+..+++.-|..++...|.
T Consensus 432 l~i~~------------la~~~~~~~-~~ig-~hf~~P~~--~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 495 (715)
T 1wdk_A 432 ISISL------------LAKALKRPE-NFVG-MHFFNPVH--MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC 495 (715)
T ss_dssp SCHHH------------HGGGCSCGG-GEEE-EECCSSTT--TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHHH------------HHHHhcCcc-ceEE-EEccCCcc--cCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC
Confidence 87641 444343221 1211 11111111 1111222333 25567788888888777766665565
Q ss_pred hHH
Q 022050 278 VTH 280 (303)
Q Consensus 278 ~g~ 280 (303)
.|.
T Consensus 496 ~Gf 498 (715)
T 1wdk_A 496 PGF 498 (715)
T ss_dssp TTT
T ss_pred CCh
Confidence 443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-11 Score=111.93 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=118.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|+||++||.|.||..+|..|.++ | |+|++|+|++++++.+.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l~~------------------------------- 44 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLVA------------------------------- 44 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH-------------------------------
T ss_pred CcCEEEEeeehHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHH-------------------------------
Confidence 468999999999999999999999 9 999999999886653210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEee
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLA 197 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~ 197 (303)
...+...++.++++.+|+||.++|.. ++++++.. +.+.+.+ ++++|.++
T Consensus 45 ------------------------~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~---g~iiId~s 97 (300)
T 3obb_A 45 ------------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECS 97 (300)
T ss_dssp ------------------------TTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC----CEEEECS
T ss_pred ------------------------cCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCC---CCEEEECC
Confidence 03455678899999999999999986 57777755 3344455 67777655
Q ss_pred ccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecC
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
. +.+++ ++.+.+.+.... +..+-.|-. +.....|..+ +.++++.+..++++.+|+.-+-+++...
T Consensus 98 T-~~p~~---------~~~~a~~~~~~G--~~~lDaPVsGg~~~A~~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~G 164 (300)
T 3obb_A 98 T-IAPTS---------ARKIHAAARERG--LAMLDAPVSGGTAGAAAGTLT-FMVGGDAEALEKARPLFEAMGRNIFHAG 164 (300)
T ss_dssp C-CCHHH---------HHHHHHHHHTTT--CEEEECCEESCHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred C-CCHHH---------HHHHHHHHHHcC--CEEEecCCCCCHHHHHhCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 3 33321 123333332111 223333322 1222234322 3457778888888888887777777666
Q ss_pred ChhHHHHHHHHHHHHH--HHHHHHhhh
Q 022050 276 DLVTHEVMGGLKNVYA--IGAGTIYFL 300 (303)
Q Consensus 276 Di~g~e~~~~lkNv~A--i~~G~~~gl 300 (303)
+.=.-...|.+-|.+. ...+++|++
T Consensus 165 ~~G~g~~~Kl~~N~l~~~~~~a~aEa~ 191 (300)
T 3obb_A 165 PDGAGQVAKVCNNQLLAVLMIGTAEAM 191 (300)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666788888888654 334555554
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.8e-11 Score=108.64 Aligned_cols=180 Identities=19% Similarity=0.219 Sum_probs=112.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||.|.||..+|..|+++ | |+|++|||++++++.+. .
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~--------------------------~------- 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-G-----YELVVWNRTASKAEPLT--------------------------K------- 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEC-------CTTT--------------------------T-------
T ss_pred CcEEEEecHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHH--------------------------H-------
Confidence 4899999999999999999999 9 99999999998664311 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.......++.++++++|+||+++|... .++++ ..+.+.+.+ ++++|..+ .+.
T Consensus 47 ----------------------~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~---~~iiid~s-T~~ 100 (297)
T 4gbj_A 47 ----------------------LGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGK---DGVHVSMS-TIS 100 (297)
T ss_dssp ----------------------TTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCT---TCEEEECS-CCC
T ss_pred ----------------------cCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCC---CeEEEECC-CCC
Confidence 134556778888999999999999864 45544 557777776 67777655 334
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH--HHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecC-Chh
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS--EIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG-DLV 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~--ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~-Di~ 278 (303)
+++ .+.+.+.+... .+..+..|-.-. ....|... +..+++.+..++++.+|+.-+-+++... ++=
T Consensus 101 p~~---------~~~~~~~~~~~--g~~~ldapVsGg~~~a~~g~l~-im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G 168 (297)
T 4gbj_A 101 PET---------SRQLAQVHEWY--GAHYVGAPIFARPEAVRAKVGN-ICLSGNAGAKERIKPIVENFVKGVFDFGDDPG 168 (297)
T ss_dssp HHH---------HHHHHHHHHHT--TCEEEECCEECCHHHHHHTCCE-EEEEECHHHHHHHHHHHHTTCSEEEECCSCTT
T ss_pred hHH---------HHHHHHHHHhc--CCceecCCcCCCccccccccce-eecccchhHHHHHHHHHHHhhCCeEEecCCcc
Confidence 431 12233322111 122333333322 12233222 3456777788999999998888877655 555
Q ss_pred HHHHHHHHHHHHH--HHHHHHhhh
Q 022050 279 THEVMGGLKNVYA--IGAGTIYFL 300 (303)
Q Consensus 279 g~e~~~~lkNv~A--i~~G~~~gl 300 (303)
.-+..|.+-|.+. ...+++|++
T Consensus 169 ~g~~~Kl~~N~~~~~~~~~~aEa~ 192 (297)
T 4gbj_A 169 AANVIKLAGNFMIACSLEMMGEAF 192 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888753 344555544
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-11 Score=113.61 Aligned_cols=159 Identities=9% Similarity=0.066 Sum_probs=101.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++||+|||+|.||++||..|.++ | ++|++|+|+++.++.+.+ .
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~~~~a~~--------------------------~---- 50 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAA-N-----HSVFGYNRSRSGAKSAVD--------------------------E---- 50 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH--------------------------T----
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH--------------------------c----
Confidence 458999999999999999999998 8 899999999876543110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc----CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW----DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~----~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
++..++++.++++ ++|+||++||+..+.++++++.++ ++ +++|+.+.
T Consensus 51 -------------------------G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~-~~---~~iv~Dv~ 101 (341)
T 3ktd_A 51 -------------------------GFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTH-AP---NNGFTDVV 101 (341)
T ss_dssp -------------------------TCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHH-CT---TCCEEECC
T ss_pred -------------------------CCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHcc-CC---CCEEEEcC
Confidence 1234556666554 579999999999999999999886 55 66665443
Q ss_pred ccCccccccccccCCHHHHHHhHhCC----CCccEE--EEeCCCcHH-HHhccCceEEEEe--CChh--------hHHHH
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGV----PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEK--------WRKPL 260 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~----~~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~--------~~~~i 260 (303)
++... +.+.+.+.++. +.+|+. ..+||..+. ++..|.++.++.. .+.+ ..+.+
T Consensus 102 -Svk~~---------i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v 171 (341)
T 3ktd_A 102 -SVKTA---------VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDV 171 (341)
T ss_dssp -SCSHH---------HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHH
T ss_pred -CCChH---------HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHH
Confidence 33221 11223333210 112321 123443332 3455655444332 2345 67899
Q ss_pred HHHhcCCCeEEEecC
Q 022050 261 AKFLRRPHFTVWDNG 275 (303)
Q Consensus 261 ~~lf~~~g~~~~~~~ 275 (303)
.++|+..|.+++..+
T Consensus 172 ~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 172 VQMALAVGAEVVPSR 186 (341)
T ss_dssp HHHHHHTTCEEEECC
T ss_pred HHHHHHcCCEEEEeC
Confidence 999999997776543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=113.47 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=104.5
Q ss_pred ceEEEECCChHHHHHHHHHHHh-----cCCCCCCeeEEEEecCCchh-hhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDS-----YGYLRDKVLIRIWRRPGRSV-DRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~-----~G~~~~~~~V~l~~r~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
+||+|||+|+||.++|..|.++ .| ++|++..+...+. +... . .
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G-----~~ViVg~r~~sks~e~A~--------e----------------~-- 103 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSD-----IVVKIGLRKGSKSFDEAR--------A----------------A-- 103 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCC-----CEEEEEECTTCSCHHHHH--------H----------------T--
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCC-----CEEEEEeCCchhhHHHHH--------H----------------C--
Confidence 7999999999999999999874 15 6888776654322 1100 0 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
|+.. ......++.+++++||+||++||+....+++++|.+++++ +++ ++.+
T Consensus 104 -----------------G~~v--------~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~---GaI-Ls~A 154 (525)
T 3fr7_A 104 -----------------GFTE--------ESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKP---NSI-LGLS 154 (525)
T ss_dssp -----------------TCCT--------TTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEES
T ss_pred -----------------CCEE--------ecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCC---CCe-EEEe
Confidence 0000 0001246778899999999999999888899999999987 666 7899
Q ss_pred ccCccccccccccCCHHHHHHh---HhCCCCccEEEEeCCCcHHHH-------h-----ccCceEEEEeC--ChhhHHHH
Q 022050 198 KGVEAELEAVPRIITPTQMINR---ATGVPIENILYLGGPNIASEI-------Y-----NKEYANARICG--AEKWRKPL 260 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~---~l~~~~~~~~v~~GP~~a~ev-------~-----~g~~~~~~~~~--~~~~~~~i 260 (303)
.|+... .+.+ .++. ..-+++.+|+++..+ + .|.++.+.+.. +.+..+.+
T Consensus 155 aGf~I~------------~le~~~i~~p~--dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~a 220 (525)
T 3fr7_A 155 HGFLLG------------HLQSAGLDFPK--NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVA 220 (525)
T ss_dssp SSHHHH------------HHHHTTCCCCT--TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHH
T ss_pred CCCCHH------------HHhhhcccCCC--CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHH
Confidence 998764 3443 2332 124788999998876 4 57775555432 23566777
Q ss_pred HHHhcCCCeE
Q 022050 261 AKFLRRPHFT 270 (303)
Q Consensus 261 ~~lf~~~g~~ 270 (303)
..+|..-|..
T Consensus 221 lala~aiG~~ 230 (525)
T 3fr7_A 221 LGWSVALGSP 230 (525)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHCCCC
Confidence 7887776654
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-10 Score=105.50 Aligned_cols=107 Identities=16% Similarity=0.254 Sum_probs=74.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+|||+|||+|+||+++|..|+.+ | + +|++|++++++++.... .+... . .+...
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~-g-----~~~~V~l~d~~~~~~~~~~~-----~~~~~---------~-~~~~~--- 61 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQR-G-----IAREIVLEDIAKERVEAEVL-----DMQHG---------S-SFYPT--- 61 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHHHH-----HHHHT---------G-GGSTT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCChhHHHHHHH-----HHHhh---------h-hhcCC---
Confidence 458999999999999999999998 8 7 99999999765541000 00000 0 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------HHHHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRY 183 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----------------~~~vl~~l~~~ 183 (303)
..+..+++. +++++||+||+++|... ++++++++.++
T Consensus 62 --------------------------~~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~ 114 (319)
T 1lld_A 62 --------------------------VSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV 114 (319)
T ss_dssp --------------------------CEEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------eEEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 134555565 46789999999996543 33788888885
Q ss_pred hhccCCCCEEEEeeccCccc
Q 022050 184 WKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~~~ 203 (303)
.+ +++|++++||+...
T Consensus 115 -~~---~~~vi~~~Np~~~~ 130 (319)
T 1lld_A 115 -AP---NAIYMLITNPVDIA 130 (319)
T ss_dssp -CT---TSEEEECCSSHHHH
T ss_pred -CC---CceEEEecCchHHH
Confidence 45 68999999998764
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=102.59 Aligned_cols=106 Identities=12% Similarity=0.180 Sum_probs=76.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||+++|..|+.+ | + +|.+||+++++++....+ +... + .++.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~-g-----~~~V~L~D~~~~~~~~~~~~-----l~~~---------~-~~~~------ 61 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALR-E-----LADVVLYDVVKGMPEGKALD-----LSHV---------T-SVVD------ 61 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHHH-----HHHH---------H-HHTT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECChhHHHHHHHH-----HHhh---------h-hccC------
Confidence 48999999999999999999999 8 6 899999999877541110 1100 0 0010
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch-------------------hHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~-------------------~~~~vl~~l 180 (303)
. ..++++++|+++++++||+||+++ |.. .+++++++|
T Consensus 62 ----~------------------~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i 119 (331)
T 1pzg_A 62 ----T------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 119 (331)
T ss_dssp ----C------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred ----C------------------CCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 026888899988899999999998 542 267888888
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++. + +++++..+|...
T Consensus 120 ~~~~-p---~a~vi~~tNP~~ 136 (331)
T 1pzg_A 120 KKYC-P---KTFIIVVTNPLD 136 (331)
T ss_dssp HHHC-T---TCEEEECCSSHH
T ss_pred HHHC-C---CcEEEEEcCchH
Confidence 8876 4 577776676544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=100.57 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=76.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.|||+|||+|.||+++|..|+.+ | + +|++||+++++++....+ +... . ...
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~-g-----~~~V~l~D~~~~~~~~~~~~-----l~~~---------~----~~~---- 55 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKD-N-----LADVVLFDIAEGIPQGKALD-----ITHS---------M----VMF---- 55 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHHH-----HHHH---------H----HHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCCchHHHHHHHH-----HHhh---------h----hhc----
Confidence 48999999999999999999999 8 6 899999998776532100 0000 0 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--------------Cc--hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--------------PS--TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--------------p~--~~~~~vl~~l~~~l~ 185 (303)
.. ..++..++|. +++++||+||+++ +. ..+++++++|.++.+
T Consensus 56 ---~~------------------~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~ 113 (317)
T 2ewd_A 56 ---GS------------------TSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP 113 (317)
T ss_dssp ---TC------------------CCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred ---CC------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC
Confidence 00 0257777888 6789999999999 33 347889999988754
Q ss_pred ccCCCCEEEEeeccCcc
Q 022050 186 ERITVPVIISLAKGVEA 202 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~ 202 (303)
+++++..+|+...
T Consensus 114 ----~~iii~~sNp~~~ 126 (317)
T 2ewd_A 114 ----NAFVICITNPLDV 126 (317)
T ss_dssp ----TSEEEECCSSHHH
T ss_pred ----CcEEEEeCChHHH
Confidence 6888888887554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=99.74 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=75.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||||+|||+|+||+++|..|+.+ |. . ++|++||+++++++.+..+ +... . .+..
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~-g~--~-~~V~l~d~~~~~~~~~~~~-----l~~~---------~-~~~~------- 54 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ-GV--A-DDYVFIDANEAKVKADQID-----FQDA---------M-ANLE------- 54 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-TC--C-SEEEEECSSHHHHHHHHHH-----HHHH---------G-GGSS-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CC--C-CEEEEEcCCHHHHHHHHHH-----HHhh---------h-hhcC-------
Confidence 48999999999999999999998 72 1 5899999998766542211 1000 0 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEecCchh--------------------HHHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTE--------------------TKEVFEEIS 181 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~d~~~a~~~aDlVIiaVp~~~--------------------~~~vl~~l~ 181 (303)
..+++ ++|+ +++++||+||+++|+.. ++++++++.
T Consensus 55 -----------------------~~~~~~~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~ 110 (309)
T 1hyh_A 55 -----------------------AHGNIVINDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK 110 (309)
T ss_dssp -----------------------SCCEEEESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEeCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 12333 4677 67899999999999865 467888887
Q ss_pred HHhhccCCCCEEEEeeccCcc
Q 022050 182 RYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 182 ~~l~~~~~~~iivs~~nGi~~ 202 (303)
++.+ +++++..+|++..
T Consensus 111 ~~~~----~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 111 ESGF----HGVLVVISNPVDV 127 (309)
T ss_dssp HTTC----CSEEEECSSSHHH
T ss_pred HHCC----CcEEEEEcCcHHH
Confidence 7653 5777779998765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-09 Score=98.40 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=74.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||+++|..|+.+ | + +|.+||+++++++.... .+... ....
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~-g-----~~~V~L~Di~~~~l~~~~~-----~l~~~-------------~~~~---- 65 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQK-D-----LGDVYMFDIIEGVPQGKAL-----DLNHC-------------MALI---- 65 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSTTHHHHHHH-----HHHHH-------------HHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCHHHHHHHHH-----HHHhH-------------hhcc----
Confidence 37999999999999999999998 8 6 89999999987753110 01100 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~ 185 (303)
. ...++++++|. +++++||+||+++ |. ..++++++++.++.
T Consensus 66 ---~------------------~~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~- 122 (328)
T 2hjr_A 66 ---G------------------SPAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC- 122 (328)
T ss_dssp ---T------------------CCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-
T ss_pred ---C------------------CCCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-
Confidence 0 00268888888 6899999999998 54 23777888888876
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|...
T Consensus 123 p---~a~viv~tNP~~ 135 (328)
T 2hjr_A 123 P---NAFVICITNPLD 135 (328)
T ss_dssp T---TCEEEECCSSHH
T ss_pred C---CeEEEEecCchH
Confidence 4 577766677543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=7.9e-09 Score=96.30 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=72.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+||+++|..|+.+ | + +|++||+++++++.+.. .+... .+ +..
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~-g-----~~~~V~l~D~~~~~~~~~~~-----~l~~~---------~~-~~~------ 53 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK-G-----FAREMVLIDVDKKRAEGDAL-----DLIHG---------TP-FTR------ 53 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CCSEEEEECSSHHHHHHHHH-----HHHHH---------GG-GSC------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEeCChHHHHHHHH-----HHHhh---------hh-hcC------
Confidence 7999999999999999999999 8 6 99999999876653211 01100 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------HHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----------------~~~vl~~l~~~l~ 185 (303)
. ..+.. +|. +++++||+||+++|... ++++++++.++.
T Consensus 54 -~----------------------~~i~~-~d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 107 (319)
T 1a5z_A 54 -R----------------------ANIYA-GDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA- 107 (319)
T ss_dssp -C----------------------CEEEE-CCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -C----------------------cEEEe-CCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 0 12444 454 56899999999998643 577888888775
Q ss_pred ccCCCCEEEEeeccCcc
Q 022050 186 ERITVPVIISLAKGVEA 202 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~ 202 (303)
+ +++++..+|++..
T Consensus 108 ~---~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 108 P---DSIVIVVTNPVDV 121 (319)
T ss_dssp T---TCEEEECSSSHHH
T ss_pred C---CeEEEEeCCcHHH
Confidence 4 5788888888765
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-08 Score=92.65 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=74.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||..+|..|+.. | + +|.++|+++++++.... .+... ....
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~-g-----~~~v~L~Di~~~~l~~~~~-----~l~~~-------------~~~~---- 55 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQK-N-----LGDVVLFDIVKNMPHGKAL-----DTSHT-------------NVMA---- 55 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH-----HHHTH-------------HHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCHHHHHHHHH-----HHHhh-------------hhhc----
Confidence 47999999999999999999998 8 5 79999999987653211 11110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch-------------------hHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~-------------------~~~~vl~~l 180 (303)
.. ..+++.++|. +++++||+||+++ |.. .+++++++|
T Consensus 56 ---~~------------------~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i 113 (322)
T 1t2d_A 56 ---YS------------------NCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHI 113 (322)
T ss_dssp ---TC------------------CCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred ---CC------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 00 0257788888 7899999999998 532 467788888
Q ss_pred HHHhhccCCCCEEEEeeccCc
Q 022050 181 SRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++. + +++++..+|...
T Consensus 114 ~~~~-p---~a~iiv~tNP~~ 130 (322)
T 1t2d_A 114 KKNC-P---NAFIIVVTNPVD 130 (322)
T ss_dssp HHHC-T---TSEEEECSSSHH
T ss_pred HHHC-C---CeEEEEecCChH
Confidence 8876 4 577766676543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=91.94 Aligned_cols=107 Identities=16% Similarity=0.129 Sum_probs=72.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||+++|..|+.+ +. .++|++||+++++++.+.. .+.. .....
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-~~---g~~V~l~D~~~~~~~~~~~-----~l~~-------------~~~~~------ 52 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK-QL---ARELVLLDVVEGIPQGKAL-----DMYE-------------SGPVG------ 52 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC---CSEEEEECSSSSHHHHHHH-----HHHT-------------THHHH------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEeCChhHHHHHHH-----hHHh-------------hhhcc------
Confidence 7999999999999999999985 31 1799999999987653210 0110 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~~~ 187 (303)
.. ..++.+++|.++ +++||+||+++|.. .++++.+.+.++. +
T Consensus 53 -~~------------------~~~i~~t~d~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~- 110 (310)
T 1guz_A 53 -LF------------------DTKVTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-K- 110 (310)
T ss_dssp -TC------------------CCEEEEESCGGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-S-
T ss_pred -cC------------------CcEEEECCCHHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-
Confidence 00 024677788866 89999999999652 2356666666664 3
Q ss_pred CCCCEEEEeeccCcc
Q 022050 188 ITVPVIISLAKGVEA 202 (303)
Q Consensus 188 ~~~~iivs~~nGi~~ 202 (303)
++.++..+|++..
T Consensus 111 --~~~viv~tNP~~~ 123 (310)
T 1guz_A 111 --NPIIIVVSNPLDI 123 (310)
T ss_dssp --SCEEEECCSSHHH
T ss_pred --CcEEEEEcCchHH
Confidence 5777778887654
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-08 Score=93.22 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=69.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|.||+++|..|+.+ | + +|.+||+++++++... ..+.. ..+..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-g-----~~~eV~L~D~~~~~~~~~~-----~~l~~-------------~~~~~---- 52 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR-G-----SCSELVLVDRDEDRAQAEA-----EDIAH-------------AAPVS---- 52 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHHH-----HHHTT-------------SCCTT----
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCCHHHHHHHH-----Hhhhh-------------hhhhc----
Confidence 7999999999999999999998 8 6 8999999986553210 00000 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~ 185 (303)
. ...+.. ++. +++++||+||++++.. .++++++++.++.
T Consensus 53 ~----------------------~~~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 107 (304)
T 2v6b_A 53 H----------------------GTRVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA- 107 (304)
T ss_dssp S----------------------CCEEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-
T ss_pred C----------------------CeEEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 0 012333 454 5789999999999443 3477888888874
Q ss_pred ccCCCCEEEEeeccCcc
Q 022050 186 ERITVPVIISLAKGVEA 202 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~ 202 (303)
+ +++++..+|+...
T Consensus 108 p---~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 108 P---DAVLLVTSNPVDL 121 (304)
T ss_dssp S---SSEEEECSSSHHH
T ss_pred C---CeEEEEecCchHH
Confidence 4 6787778888654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=89.27 Aligned_cols=129 Identities=9% Similarity=0.063 Sum_probs=87.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|||+|||+|.||+++|..|.++ | ++|++|++.+
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~-G-----~~V~~~~~~~--------------------------------------- 39 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSV-G-----HYVTVLHAPE--------------------------------------- 39 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHT-T-----CEEEECSSGG---------------------------------------
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEecCHH---------------------------------------
Confidence 458999999999999999999999 8 8999988731
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+ +.+|| |++||...+.++++++.+++++ +++|++++..+.
T Consensus 40 ----------------------------------~-~~~aD--ilavP~~ai~~vl~~l~~~l~~---g~ivvd~sgs~~ 79 (232)
T 3dfu_A 40 ----------------------------------D-IRDFE--LVVIDAHGVEGYVEKLSAFARR---GQMFLHTSLTHG 79 (232)
T ss_dssp ----------------------------------G-GGGCS--EEEECSSCHHHHHHHHHTTCCT---TCEEEECCSSCC
T ss_pred ----------------------------------H-hccCC--EEEEcHHHHHHHHHHHHHhcCC---CCEEEEECCcCH
Confidence 0 23578 9999999999999999988877 788877653332
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
.. ++......+. .+ +-..|-+ +.+ ..+...+.+..+.++.++...|-+++..++
T Consensus 80 ~~------------vl~~~~~~g~-~f-vg~HPm~------g~~-~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~ 133 (232)
T 3dfu_A 80 IT------------VMDPLETSGG-IV-MSAHPIG------QDR-WVASALDELGETIVGLLVGELGGSIVEIAD 133 (232)
T ss_dssp GG------------GGHHHHHTTC-EE-EEEEEEE------TTE-EEEEESSHHHHHHHHHHHHHTTCEECCCCG
T ss_pred HH------------HHHHHHhCCC-cE-EEeeeCC------CCc-eeeeCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 22 2222221111 11 1112221 222 122234566788899999988988876544
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-08 Score=90.66 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=69.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|.||+++|..|+.+ | + +|.+||+++++++.... -++.. ++ +++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~-~-----~~~~v~L~D~~~~~~~g~~~-----dl~~~---------~~-~~~------ 53 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN-L-----DVDEIALVDIAEDLAVGEAM-----DLAHA---------AA-GID------ 53 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-S-----CCSEEEEECSSHHHHHHHHH-----HHHHH---------HH-TTT------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEECChHHHHHHHH-----HHHhh---------hh-hcC------
Confidence 7999999999999999999998 7 5 89999999987642110 01100 00 010
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~ 185 (303)
. ..++.+++| .+++++||+||++.... .++++.+++.++.
T Consensus 54 ----~------------------~~~i~~t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~- 109 (294)
T 1oju_A 54 ----K------------------YPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA- 109 (294)
T ss_dssp ----C------------------CCEEEEESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred ----C------------------CCEEEEeCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 0 024667778 67899999999987321 2344555555553
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|.+.
T Consensus 110 p---~a~iivvsNPvd 122 (294)
T 1oju_A 110 P---ESKILVVTNPMD 122 (294)
T ss_dssp T---TCEEEECSSSHH
T ss_pred C---CeEEEEeCCcch
Confidence 3 678888887654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.5e-08 Score=88.94 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=69.6
Q ss_pred HhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccc
Q 022050 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (303)
Q Consensus 35 ~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l 114 (303)
+.++....++||+|||+|.||..+|..++.. |.. .+|.|+|++++ ..... .. +
T Consensus 6 ~~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~-g~~---~ev~L~Di~~~-~~g~a-------~d---------------l 58 (303)
T 2i6t_A 6 WANHENKTVNKITVVGGGELGIACTLAISAK-GIA---DRLVLLDLSEG-TKGAT-------MD---------------L 58 (303)
T ss_dssp --------CCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECCC------CH-------HH---------------H
T ss_pred cccccCCCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEcCCcc-hHHHH-------HH---------------H
Confidence 3444445568999999999999999999998 821 28999999986 32100 00 0
Q ss_pred hhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec-------------Cch--hHHHHHHH
Q 022050 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL-------------PST--ETKEVFEE 179 (303)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV-------------p~~--~~~~vl~~ 179 (303)
... .. ++++.++|. +++++||+||+++ +.. .+.+++++
T Consensus 59 ~~~-------~~-------------------~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~ 111 (303)
T 2i6t_A 59 EIF-------NL-------------------PNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPA 111 (303)
T ss_dssp HHH-------TC-------------------TTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred hhh-------cC-------------------CCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000 00 156777888 6789999999997 222 36788888
Q ss_pred HHHHhhccCCCCEEEEeeccCc
Q 022050 180 ISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 180 l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+.++. + +++++..+|.+.
T Consensus 112 i~~~~-p---~a~iiv~sNP~~ 129 (303)
T 2i6t_A 112 LGHYS-Q---HSVLLVASQPVE 129 (303)
T ss_dssp HHHHT-T---TCEEEECSSSHH
T ss_pred HHHhC-C---CeEEEEcCChHH
Confidence 88886 4 578777887644
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-08 Score=93.78 Aligned_cols=93 Identities=18% Similarity=0.255 Sum_probs=71.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|+|||+|.||.++|..++.. | ++|.+|+|+++..+
T Consensus 163 ~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~dr~~~~~~----------------------------------- 201 (333)
T 3ba1_A 163 SGKRVGIIGLGRIGLAVAERAEAF-D-----CPISYFSRSKKPNT----------------------------------- 201 (333)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSCCTTC-----------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCchhcc-----------------------------------
Confidence 347999999999999999999987 8 89999999875210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
......++++++++||+|++++|.. .++.++ +++...+++ ++++|++..|
T Consensus 202 -------------------------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~---gailIn~srG 253 (333)
T 3ba1_A 202 -------------------------NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGP---KGVLINIGRG 253 (333)
T ss_dssp -------------------------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCT---TCEEEECSCG
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCC---CCEEEECCCC
Confidence 1223457888889999999999986 455555 344556777 7899999888
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
-...
T Consensus 254 ~~vd 257 (333)
T 3ba1_A 254 PHVD 257 (333)
T ss_dssp GGBC
T ss_pred chhC
Confidence 6654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=95.11 Aligned_cols=111 Identities=15% Similarity=0.236 Sum_probs=76.1
Q ss_pred CceEEEECCChH-HHHHHHHHHHhc-CCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAW-GSVFTAMLQDSY-GYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~m-G~aiA~~La~~~-G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.|||+|||+|++ |.++|..|+.+. + +. .++|.|||+++++++.++. + .. .+++..
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~-l~-~~eV~L~Di~~e~~~~~~~--~----~~------------~~l~~~--- 84 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEE-FP-IRKLKLYDNDKERQDRIAG--A----CD------------VFIREK--- 84 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTT-SC-EEEEEEECSCHHHHHHHHH--H----HH------------HHHHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCC-CC-CCEEEEEeCCHHHHHHHHH--H----HH------------HHhccC---
Confidence 379999999999 667887777651 1 11 1789999999987765321 0 00 112211
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------------------
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------------------- 172 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~---------------------------- 172 (303)
.++ .++.+++|..+++++||+||+++|...
T Consensus 85 ----~~~------------------~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~ 142 (472)
T 1u8x_X 85 ----APD------------------IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIA 142 (472)
T ss_dssp ----CTT------------------SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHH
T ss_pred ----CCC------------------CEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHH
Confidence 110 257888899889999999999998842
Q ss_pred --------HHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 173 --------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 173 --------~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++++++.++.+ +++++..+|.+..
T Consensus 143 ~~~rni~i~~~i~~~i~~~~P----~A~ii~~TNPvdi 176 (472)
T 1u8x_X 143 YGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI 176 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4566666777654 6889989988654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-07 Score=85.30 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=69.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|.||..+|..++.. | + +|.++|+++++++... .-+.. .....
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~-g-----~~~v~L~Di~~~~~~g~~-----~dl~~-------------~~~~~----- 53 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK-E-----LGDIVLLDIVEGVPQGKA-----LDLYE-------------ASPIE----- 53 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSSSHHHHHH-----HHHHT-------------THHHH-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCCccHHHHHH-----HhHHH-------------hHhhc-----
Confidence 7999999999999999999998 8 5 7999999987664211 00110 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~~ 186 (303)
. ...++..++|. +++++||+||+++... .+.++++++.++. +
T Consensus 54 --~------------------~~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p 111 (309)
T 1ur5_A 54 --G------------------FDVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-P 111 (309)
T ss_dssp --T------------------CCCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-T
T ss_pred --C------------------CCeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C
Confidence 0 00257777888 6799999999998321 2345666666654 4
Q ss_pred cCCCCEEEEeeccCc
Q 022050 187 RITVPVIISLAKGVE 201 (303)
Q Consensus 187 ~~~~~iivs~~nGi~ 201 (303)
+++++..+|.+.
T Consensus 112 ---~a~vi~~tNPv~ 123 (309)
T 1ur5_A 112 ---NAVIIMVNNPLD 123 (309)
T ss_dssp ---TCEEEECCSSHH
T ss_pred ---CeEEEEcCCchH
Confidence 577766777644
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=85.36 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=72.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||.++|..|+.+ | + +|.+||+++++++.... .+... ++ ++ .
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~-~-----~~~v~L~Di~~~~~~g~~~-----dl~~~---------~~-~~-~----- 59 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK-E-----LGDVVLFDIAEGTPQGKGL-----DIAES---------SP-VD-G----- 59 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH-----HHHHH---------HH-HH-T-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCchhHHHHHH-----HHhch---------hh-hc-C-----
Confidence 47999999999999999999998 8 6 99999999987642110 01110 00 00 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~ 185 (303)
. ...+.+++|. +++++||+||++... ..++++.+++..+.
T Consensus 60 ----~------------------~~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~- 115 (324)
T 3gvi_A 60 ----F------------------DAKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA- 115 (324)
T ss_dssp ----C------------------CCCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----C------------------CCEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-
Confidence 0 0256777787 689999999998732 12456666666665
Q ss_pred ccCCCCEEEEeeccCcc
Q 022050 186 ERITVPVIISLAKGVEA 202 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~ 202 (303)
+ +++++..+|.+..
T Consensus 116 p---~a~iivvtNPvd~ 129 (324)
T 3gvi_A 116 P---EAFVICITNPLDA 129 (324)
T ss_dssp T---TCEEEECCSSHHH
T ss_pred C---CeEEEecCCCcHH
Confidence 3 6788888876543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-08 Score=91.50 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-|+|+|||+|.||..+|..++.. | ++|++|+|++++.+.. ..
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~------ 196 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPF-G-----VQRFLYTGRQPRPEEA--------------------------AE------ 196 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-T-----CCEEEEESSSCCHHHH--------------------------HT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcchhHH--------------------------Hh------
Confidence 48999999999999999999988 8 8999999987643210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+..+ ++++++++||+|++++|.. .++.++ +++.+.+++ ++++|....|-
T Consensus 197 -----------------------~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~---gailIn~srg~ 249 (330)
T 2gcg_A 197 -----------------------FQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKE---TAVFINISRGD 249 (330)
T ss_dssp -----------------------TTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCT---TCEEEECSCGG
T ss_pred -----------------------cCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCC---CcEEEECCCCc
Confidence 023333 6778889999999999986 345444 455566776 78888888774
Q ss_pred c
Q 022050 201 E 201 (303)
Q Consensus 201 ~ 201 (303)
.
T Consensus 250 ~ 250 (330)
T 2gcg_A 250 V 250 (330)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-08 Score=91.12 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=72.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..|+|+|||+|.||..+|..++.. | ++|.+|+|+++. +.. ...
T Consensus 149 ~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~-~~~--------------------------~~~---- 191 (334)
T 2dbq_A 149 YGKTIGIIGLGRIGQAIAKRAKGF-N-----MRILYYSRTRKE-EVE--------------------------REL---- 191 (334)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HHH--------------------------HHH----
T ss_pred CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEECCCcch-hhH--------------------------hhc----
Confidence 358999999999999999999988 8 899999998864 210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.. .++++++++||+|++++|... ++.++ +++.+.+++ ++++|++.+|
T Consensus 192 -------------------------g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~---~ailIn~srg 242 (334)
T 2dbq_A 192 -------------------------NAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKK---TAILINIARG 242 (334)
T ss_dssp -------------------------CCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCG
T ss_pred -------------------------Cccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCC---CcEEEECCCC
Confidence 1223 367788899999999999975 55555 455666777 7899988888
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
-..+
T Consensus 243 ~~v~ 246 (334)
T 2dbq_A 243 KVVD 246 (334)
T ss_dssp GGBC
T ss_pred cccC
Confidence 5554
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-07 Score=92.95 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=74.7
Q ss_pred CceEEEECCChH--HHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAW--GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~m--G~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|||+|+| |.++|..|++..+ +. .++|.|||+++++++.++.. .. .+++..
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~-l~-~~eV~L~Di~~e~l~~~~~~-----~~-------------~~l~~~--- 59 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPG-LS-GSTVTLMDIDEERLDAILTI-----AK-------------KYVEEV--- 59 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGG-GT-TCEEEEECSCHHHHHHHHHH-----HH-------------HHHHHT---
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCc-CC-CCEEEEEeCCHHHHHHHHHH-----HH-------------HHhccC---
Confidence 479999999995 6777888874211 10 17999999999877653211 00 111111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------------------------
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------------------- 171 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------------------- 171 (303)
.. ..++++++|+.+++++||+||+++++.
T Consensus 60 ----~~------------------~~~I~~ttD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~ 117 (480)
T 1obb_A 60 ----GA------------------DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMV 117 (480)
T ss_dssp ----TC------------------CCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCC
T ss_pred ----CC------------------CcEEEEECCHHHHhCCCCEEEECCCcccccccccccccccccccccchhhhcCCcc
Confidence 01 025888899988899999999999752
Q ss_pred -------------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 -------------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 -------------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++..+.+ +++++..+|.+..
T Consensus 118 ~~~G~~~~~rni~i~~~i~~~i~~~~P----~A~ii~~TNPvdi 157 (480)
T 1obb_A 118 SDYYTFSNYNQLKYFVDIARKIEKLSP----KAWYLQAANPIFE 157 (480)
T ss_dssp TTCCSSSCHHHHHHHHHHHHHHHHHCT----TCEEEECSSCHHH
T ss_pred chhhhHHhhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 33566666666654 5888888887654
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=88.56 Aligned_cols=92 Identities=16% Similarity=0.267 Sum_probs=63.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||.++|..+... | .+|..|+|+++...
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~------------------------------------ 208 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAF-G-----MSVRYWNRSTLSGV------------------------------------ 208 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCTTS------------------------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCccccc------------------------------------
Confidence 48999999999999999999887 8 89999999864210
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 209 ------------------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~---gailIN~aRG~ 261 (340)
T 4dgs_A 209 ------------------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP---EGIVVNVARGN 261 (340)
T ss_dssp ------------------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT---TCEEEECSCC-
T ss_pred ------------------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC---CCEEEECCCCc
Confidence 1223457888899999999999954 456665 555566777 78999988885
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 262 vvd 264 (340)
T 4dgs_A 262 VVD 264 (340)
T ss_dssp ---
T ss_pred ccC
Confidence 443
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-07 Score=74.28 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=35.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|+|+|+|.||..++..|... | ++|+++++++++++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~-g-----~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSS-G-----HSVVVVDKNEYAFHR 57 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCGGGGGG
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 48999999999999999999998 8 899999999876653
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=91.23 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=76.4
Q ss_pred CceEEEECCCh--HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~--mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.|||+|||+|+ ||.+++..|+.. ..+ . .+|++||++++++++++. +. ..+...
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~-~~~-~-geV~L~Di~~e~le~~~~------~~-------------~~l~~~--- 59 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSID-ERM-S-GTVALYDLDFEAAQKNEV------IG-------------NHSGNG--- 59 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHC-SSC-C-EEEEEECSSHHHHHHHHH------HH-------------TTSTTS---
T ss_pred CCEEEEECCChhHhHHHHHHHHHhc-ccc-C-CeEEEEeCCHHHHHHHHH------HH-------------HHHhcc---
Confidence 37999999999 579999999874 212 1 489999999987765321 00 011100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-----------------------------
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------------------- 171 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------------------- 171 (303)
..++++|+|+++|+++||+||+++++.
T Consensus 60 ------------------------~~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GG 115 (450)
T 3fef_A 60 ------------------------RWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGG 115 (450)
T ss_dssp ------------------------CEEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHH
T ss_pred ------------------------CCeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCch
Confidence 025889999999999999999999741
Q ss_pred ---------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 ---------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 ---------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++..+.+ +++++..+|.+..
T Consensus 116 i~~alr~~~i~~~i~~~i~~~~p----~a~~i~~tNPvdi 151 (450)
T 3fef_A 116 IIRGLRAVPIFAEIARAIRDYAP----ESWVINYTNPMSV 151 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TSEEEECCSSHHH
T ss_pred hhcccccHHHHHHHHHHHHHHCC----CeEEEEecCchHH
Confidence 15666677777654 6899999988664
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.8e-07 Score=83.61 Aligned_cols=108 Identities=16% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..++||+|||+|.||.++|..++.. |.. .+|.++|++++.++... .. +.. ..+.
T Consensus 4 ~~~~kI~IIGaG~vG~sla~~l~~~-~~~---~ev~l~Di~~~~~~~~~-~d----l~~-------------~~~~---- 57 (316)
T 1ldn_A 4 NGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIGDA-MD----FNH-------------GKVF---- 57 (316)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH-HH----HHH-------------HTTS----
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCcchHHHHH-hh----HHH-------------Hhhh----
Confidence 3568999999999999999999988 621 38999999976443210 00 100 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHh
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYW 184 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l 184 (303)
+. .+.+++++..+++++||+||++++.. .+.++++++.++.
T Consensus 58 -----~~------------------~~~~i~~~~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~ 114 (316)
T 1ldn_A 58 -----AP------------------KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG 114 (316)
T ss_dssp -----SS------------------SCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT
T ss_pred -----cC------------------CCeEEEcCcHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC
Confidence 00 12344444556799999999997542 3566777777765
Q ss_pred hccCCCCEEEEeeccCc
Q 022050 185 KERITVPVIISLAKGVE 201 (303)
Q Consensus 185 ~~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|.+.
T Consensus 115 -p---~a~~iv~tNPv~ 127 (316)
T 1ldn_A 115 -F---QGLFLVATNPVD 127 (316)
T ss_dssp -C---CSEEEECSSSHH
T ss_pred -C---CCEEEEeCCchH
Confidence 3 567776777654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=89.16 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=69.3
Q ss_pred CCceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.-++|+|||.|.||..+|..+. .. | ++|.+|+|+++..+.. ...
T Consensus 162 ~g~~vgIIG~G~IG~~vA~~l~~~~-G-----~~V~~~d~~~~~~~~~--------------------------~~~--- 206 (348)
T 2w2k_A 162 RGHVLGAVGLGAIQKEIARKAVHGL-G-----MKLVYYDVAPADAETE--------------------------KAL--- 206 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-C-----CEEEEECSSCCCHHHH--------------------------HHH---
T ss_pred CCCEEEEEEECHHHHHHHHHHHHhc-C-----CEEEEECCCCcchhhH--------------------------hhc---
Confidence 3489999999999999999998 77 8 8999999987643310 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~n 198 (303)
.+...+++++++++||+|++++|... ++.++ +++.+.+++ ++++|.+..
T Consensus 207 --------------------------g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~---gailin~sr 257 (348)
T 2w2k_A 207 --------------------------GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP---GSRIVNTAR 257 (348)
T ss_dssp --------------------------TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT---TEEEEECSC
T ss_pred --------------------------CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC---CCEEEECCC
Confidence 13334577788889999999999863 55554 345556776 788887777
Q ss_pred c
Q 022050 199 G 199 (303)
Q Consensus 199 G 199 (303)
|
T Consensus 258 g 258 (348)
T 2w2k_A 258 G 258 (348)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=87.50 Aligned_cols=92 Identities=12% Similarity=0.173 Sum_probs=70.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | ++|..|+|+++..+
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~------------------------------------ 159 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAF-G-----MRVIAYTRSSVDQN------------------------------------ 159 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSCCCTT------------------------------------
T ss_pred cchheeeccCchhHHHHHHHHhh-C-----cEEEEEeccccccc------------------------------------
Confidence 47999999999999999999988 8 89999999875321
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.....+++++++++||+|++++|. ..++.++ ++....+++ ++++|.+..|-
T Consensus 160 ------------------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~aRG~ 212 (290)
T 3gvx_A 160 ------------------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK---NLTIVNVARAD 212 (290)
T ss_dssp ------------------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT---TCEEEECSCGG
T ss_pred ------------------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc---CceEEEeehhc
Confidence 122345788888999999999995 3444444 445556777 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 213 ~vd 215 (290)
T 3gvx_A 213 VVS 215 (290)
T ss_dssp GBC
T ss_pred ccC
Confidence 543
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-07 Score=89.61 Aligned_cols=111 Identities=13% Similarity=0.154 Sum_probs=76.0
Q ss_pred CceEEEECCChH-HHHHHHHHHHh-cCCCCCCeeEEEEecCC--chhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGAGAW-GSVFTAMLQDS-YGYLRDKVLIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGaG~m-G~aiA~~La~~-~G~~~~~~~V~l~~r~~--~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.|||+|||+|++ |.+++..|+.+ .+ +. .++|.|||+++ ++++.++. + .. .+++..
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~-l~-~~ev~L~Di~~~~e~~~~~~~--~----~~------------~~~~~~- 65 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHE-LP-VGELWLVDIPEGKEKLEIVGA--L----AK------------RMVEKA- 65 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTT-CC-EEEEEEECCGGGHHHHHHHHH--H----HH------------HHHHHT-
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCC-CC-CCEEEEEEcCCChHHHHHHHH--H----HH------------HHHhhc-
Confidence 489999999999 88888888872 13 11 16899999999 87664321 0 00 011111
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh--------------------------
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-------------------------- 172 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-------------------------- 172 (303)
..+ .++.+++|..+++++||+||++++...
T Consensus 66 ------~~~------------------~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~gg 121 (450)
T 1s6y_A 66 ------GVP------------------IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGG 121 (450)
T ss_dssp ------TCC------------------CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHH
T ss_pred ------CCC------------------cEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccch
Confidence 010 257788899889999999999998632
Q ss_pred ----------HHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 173 ----------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 173 ----------~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
+.++++++..+.+ +++++..+|.+..
T Consensus 122 i~~~~rni~i~~~i~~~i~~~~P----~a~ii~~tNPvdi 157 (450)
T 1s6y_A 122 LFKGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4566666666654 6889988988654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-07 Score=83.43 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+|||+|||+|.+|.+++..|+.. |.+ .+|.++|+++++++... ..+.. ..+
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~ev~L~Di~~~~~~g~~-----~dl~~-------------~~~------ 57 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAIGEA-----MDINH-------------GLP------ 57 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CCHHH-----HHHTT-------------SCC------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChHHHHHHH-----HHHHH-------------hHH------
Confidence 458999999999999999999998 721 28999999987664210 00110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh----------------HHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~----------------~~~vl~~l~~~l~ 185 (303)
+ ..+++++.+..+++++||+||++++... +.++.+.+.++.
T Consensus 58 ----~------------------~~~~~i~~~~~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~- 114 (318)
T 1y6j_A 58 ----F------------------MGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY- 114 (318)
T ss_dssp ----C------------------TTCEEEC--CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----h------------------cCCeEEEECCHHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-
Confidence 0 0123333233567899999999986532 466777777764
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|.+.
T Consensus 115 p---~a~viv~tNPv~ 127 (318)
T 1y6j_A 115 N---HGVILVVSNPVD 127 (318)
T ss_dssp C---SCEEEECSSSHH
T ss_pred C---CcEEEEecCcHH
Confidence 4 567776777644
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.4e-07 Score=70.89 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.|+|+|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~ 42 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK 42 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 38999999999999999999998 8 899999998876543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=88.40 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=71.4
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
-.-++|+|||+|.||.++|..++.. | ++|.+|+|+++. +.. ...
T Consensus 144 l~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~~--------------------------~~~--- 187 (333)
T 2d0i_A 144 LYGKKVGILGMGAIGKAIARRLIPF-G-----VKLYYWSRHRKV-NVE--------------------------KEL--- 187 (333)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCH-HHH--------------------------HHH---
T ss_pred CCcCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcch-hhh--------------------------hhc---
Confidence 3458999999999999999999988 8 899999998863 210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~n 198 (303)
.+.. .++++++++||+|++++|.. .++.++. ++.+.+++ + +++.+.+
T Consensus 188 --------------------------g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~---g-ilin~sr 236 (333)
T 2d0i_A 188 --------------------------KARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG---K-YLVNIGR 236 (333)
T ss_dssp --------------------------TEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBT---C-EEEECSC
T ss_pred --------------------------Ccee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCC---C-EEEECCC
Confidence 1333 36777888999999999997 5566553 44556777 8 8888888
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|-..+
T Consensus 237 g~~vd 241 (333)
T 2d0i_A 237 GALVD 241 (333)
T ss_dssp GGGBC
T ss_pred CcccC
Confidence 76554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=81.99 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+|||+|||+|.||+++|..|+.. |.. .+|.++|+++++++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~-~~~---~~l~l~D~~~~k~~ 44 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQ-GIT---DELVVIDVNKEKAM 44 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEecchHHHH
Confidence 358999999999999999999998 721 28999999887654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=80.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
||+|||+|.||.++|..++.. | . +|.|+|+++++++... . -+... .... .
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-~-----l~el~L~Di~~~~~~g~~-~----dl~~~-------------~~~~----~- 51 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-G-----YDDLLLIARTPGKPQGEA-L----DLAHA-------------AAEL----G- 51 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSSTTHHHHHH-H----HHHHH-------------HHHH----T-
T ss_pred CEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCChhhHHHHH-H----HHHHh-------------hhhc----C-
Confidence 799999999999999999988 7 4 6999999987664211 0 01100 0000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~~~ 187 (303)
....+..++|. +++++||+||++.+.. .++++++++.++. +
T Consensus 52 --------------------~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p- 108 (308)
T 2d4a_B 52 --------------------VDIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-K- 108 (308)
T ss_dssp --------------------CCCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-T-
T ss_pred --------------------CCeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-C-
Confidence 00257777787 5799999999996443 2677888888775 4
Q ss_pred CCCCEEEEeeccCc
Q 022050 188 ITVPVIISLAKGVE 201 (303)
Q Consensus 188 ~~~~iivs~~nGi~ 201 (303)
++.++..+|.+.
T Consensus 109 --~a~iiv~tNPv~ 120 (308)
T 2d4a_B 109 --DAIVVITTNPVD 120 (308)
T ss_dssp --TCEEEECCSSHH
T ss_pred --CeEEEEeCCchH
Confidence 577777787654
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=80.73 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=70.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|||+|.||.++|..|+.+ | . +|.++|+++++++... ..++. .....
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~-~-----~~~v~l~Di~~~~~~g~a-----~dL~~-------------~~~~~---- 56 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIK-Q-----LGDVVLFDIAQGMPNGKA-----LDLLQ-------------TCPIE---- 56 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHH-----HHHHT-------------THHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCChHHHHHHH-----HHHHh-------------hhhhc----
Confidence 48999999999999999999998 7 5 8999999997654211 00110 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~ 185 (303)
+ . ...+..++|. +++++||+||++... ..++++.+++..+.
T Consensus 57 ~---~------------------~~~v~~t~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~- 113 (321)
T 3p7m_A 57 G---V------------------DFKVRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC- 113 (321)
T ss_dssp T---C------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C---C------------------CcEEEEcCCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-
Confidence 0 0 0246666675 578999999998632 13556666677765
Q ss_pred ccCCCCEEEEeeccCcc
Q 022050 186 ERITVPVIISLAKGVEA 202 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~ 202 (303)
+ +++++..+|.+..
T Consensus 114 p---~a~vivvtNPvd~ 127 (321)
T 3p7m_A 114 P---NAFVICITNPLDI 127 (321)
T ss_dssp T---TCEEEECCSSHHH
T ss_pred C---CcEEEEecCchHH
Confidence 3 5777777776543
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=81.03 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=33.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.||.++|..++.+ |.. .+|.++|+++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~ 39 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ-DVA---KEVVMVDIKDGMPQ 39 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCS---SEEEEECSSTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCchHHHH
Confidence 8999999999999999999998 721 38999999997654
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=82.24 Aligned_cols=107 Identities=8% Similarity=-0.054 Sum_probs=72.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..+||+|||+|.||.++|..++.+ |.+ .+|.++|+++++++.... -++.. . .+.
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~-g~~---~ev~L~Di~~~~~~g~a~-----DL~~~---------~-~~~------- 73 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMK-DLA---DEVALVDVMEDKLKGEMM-----DLEHG---------S-LFL------- 73 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHH-CCC---SEEEEECSCHHHHHHHHH-----HHHHH---------G-GGS-------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECCHHHHHHHHH-----Hhhhh---------h-hcc-------
Confidence 458999999999999999999998 832 389999998876543110 01100 0 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~ 185 (303)
. ...+..++|.++ +++||+||++... ..++++.+++.++ .
T Consensus 74 ---~-------------------~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~ 129 (330)
T 3ldh_A 74 ---H-------------------TAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-S 129 (330)
T ss_dssp ---C-------------------CSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-C
T ss_pred ---c-------------------CCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-C
Confidence 0 024667778865 8999999998622 1366777788777 3
Q ss_pred ccCCCCEEEEeeccCc
Q 022050 186 ERITVPVIISLAKGVE 201 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|...
T Consensus 130 P---~a~ilvvtNPvd 142 (330)
T 3ldh_A 130 P---DCLKELHPELGT 142 (330)
T ss_dssp T---TCEEEECSSSHH
T ss_pred C---CceEEeCCCccH
Confidence 4 678888887644
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=80.13 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=71.0
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.....|||+|||+|.+|.+++..++.. +.+ .++.|+|+++++++... .-+.. ..+ +
T Consensus 5 ~~~~~~KI~IiGaG~vG~~la~~l~~~-~~~---~el~L~Di~~~~~~g~~-----~dl~~-------------~~~-~- 60 (326)
T 2zqz_A 5 TDKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTKGDA-----IDLSN-------------ALP-F- 60 (326)
T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHHHHH-----HHHHT-------------TGG-G-
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHhHHHH-----HHHHH-------------HHH-h-
Confidence 445568999999999999999999988 632 38999999887654211 00110 000 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHH
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISR 182 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~ 182 (303)
..+++++.+..+++++||+||++.+.. .+.++.+.+..
T Consensus 61 --------------------------~~~~~i~~~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~ 114 (326)
T 2zqz_A 61 --------------------------TSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114 (326)
T ss_dssp --------------------------SCCCEEEECCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cCCeEEEECCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 013444445567899999999998542 24445555666
Q ss_pred HhhccCCCCEEEEeeccCcc
Q 022050 183 YWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~~ 202 (303)
+. + ++.++..+|.+..
T Consensus 115 ~~-p---~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 115 SG-F---NGIFLVAANPVDI 130 (326)
T ss_dssp HT-C---CSEEEECSSSHHH
T ss_pred HC-C---CeEEEEeCCcHHH
Confidence 54 4 5777777877543
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-07 Score=83.92 Aligned_cols=120 Identities=21% Similarity=0.234 Sum_probs=75.1
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhH
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l 93 (303)
.+|-+..+|-...--+..+++. +. +-..+||+|||+|.||.+++..|++. | .+|++|+|++++.+++.
T Consensus 102 ~~g~~~g~nTd~~G~~~~l~~~-~~-~~~~~~v~iiGaG~~g~aia~~L~~~-g-----~~V~v~~r~~~~~~~l~---- 169 (275)
T 2hk9_A 102 ENGKAYGYNTDWIGFLKSLKSL-IP-EVKEKSILVLGAGGASRAVIYALVKE-G-----AKVFLWNRTKEKAIKLA---- 169 (275)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-CT-TGGGSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSHHHHHHHT----
T ss_pred eCCEEEeecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHHHH----
Confidence 4554444443333333333332 11 22348999999999999999999998 8 79999999986544211
Q ss_pred HHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH
Q 022050 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (303)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~ 173 (303)
. . ..+.+.+++.++++++|+||.++|....
T Consensus 170 ---------------------~---------~--------------------~g~~~~~~~~~~~~~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 170 ---------------------Q---------K--------------------FPLEVVNSPEEVIDKVQVIVNTTSVGLK 199 (275)
T ss_dssp ---------------------T---------T--------------------SCEEECSCGGGTGGGCSEEEECSSTTSS
T ss_pred ---------------------H---------H--------------------cCCeeehhHHhhhcCCCEEEEeCCCCCC
Confidence 0 0 0233444666778899999999998753
Q ss_pred HHHHHHH-HHHhhccCCCCEEEEeec
Q 022050 174 KEVFEEI-SRYWKERITVPVIISLAK 198 (303)
Q Consensus 174 ~~vl~~l-~~~l~~~~~~~iivs~~n 198 (303)
.++.+.+ ...+++ +++++++..
T Consensus 200 ~~~~~~i~~~~l~~---g~~viDv~~ 222 (275)
T 2hk9_A 200 DEDPEIFNYDLIKK---DHVVVDIIY 222 (275)
T ss_dssp TTCCCSSCGGGCCT---TSEEEESSS
T ss_pred CCCCCCCCHHHcCC---CCEEEEcCC
Confidence 3211112 234555 678877664
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-06 Score=80.09 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=70.1
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....+||+|||+|.||+++|..|+.. |.+ .++.++|+++++++.... -+.. ..+
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~g~a~-----DL~~-------------~~~---- 59 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTKGDAI-----DLED-------------ALP---- 59 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHHHHHH-----HHHT-------------TGG----
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEeCChHHHHHHHh-----hHhh-------------hhh----
Confidence 34568999999999999999999998 732 289999998876543110 0110 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRY 183 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~ 183 (303)
+ +.+++++++..+++++||+||++.... .+.++.+.+.++
T Consensus 60 ------~------------------~~~~~i~~~~~~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~ 115 (326)
T 3vku_A 60 ------F------------------TSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS 115 (326)
T ss_dssp ------G------------------SCCCEEEECCGGGGTTCSEEEECCCCC----------------CHHHHHHHHHTT
T ss_pred ------h------------------cCCcEEEECcHHHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 013445555556799999999986321 245566666665
Q ss_pred hhccCCCCEEEEeeccCc
Q 022050 184 WKERITVPVIISLAKGVE 201 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~ 201 (303)
.+ +++++..+|.+.
T Consensus 116 ~p----~a~ilvvtNPvd 129 (326)
T 3vku_A 116 GF----NGIFLVAANPVD 129 (326)
T ss_dssp TC----CSEEEECSSSHH
T ss_pred CC----ceEEEEccCchH
Confidence 43 578887887644
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.6e-06 Score=78.40 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=68.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.+|.+++..++.. +.+ .++.|+|+++++++... .-+.. ..+ +
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~g~~-----~dl~~-------------~~~-~------ 56 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTKGDA-----LDLED-------------AQA-F------ 56 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH-----HHHHG-------------GGG-G------
T ss_pred CEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHHHHHH-----HHHHH-------------HHH-h------
Confidence 8999999999999999999998 632 38999999887654211 00110 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~~~ 187 (303)
+ .+++++.+..+++++||+||++.+.. .++++.+.+..+. +
T Consensus 57 --~-------------------~~~~v~~~~~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p- 113 (318)
T 1ez4_A 57 --T-------------------APKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-F- 113 (318)
T ss_dssp --S-------------------CCCEEEECCGGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-C-
T ss_pred --c-------------------CCeEEEECCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-C-
Confidence 0 13444445567899999999998543 2444555555553 4
Q ss_pred CCCCEEEEeeccCcc
Q 022050 188 ITVPVIISLAKGVEA 202 (303)
Q Consensus 188 ~~~~iivs~~nGi~~ 202 (303)
++.++..+|.+..
T Consensus 114 --~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 114 --DGIFLVAANPVDI 126 (318)
T ss_dssp --CSEEEECSSSHHH
T ss_pred --CeEEEEeCCcHHH
Confidence 5777777877543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-07 Score=85.06 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=69.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | ++|..|+|+++..+. ..
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 179 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAW-G-----FPLRCWSRSRKSWPG--------------------------VE------- 179 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSCCCCTT--------------------------CE-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEcCCchhhhh--------------------------hh-------
Confidence 48999999999999999999887 8 899999998753221 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 180 ------------------------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG~ 232 (315)
T 3pp8_A 180 ------------------------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD---GAYVLNLARGV 232 (315)
T ss_dssp ------------------------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCC---CCEEEECCCCh
Confidence 0001146778889999999999954 455555 445555676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 233 ~vd 235 (315)
T 3pp8_A 233 HVQ 235 (315)
T ss_dssp GBC
T ss_pred hhh
Confidence 543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-07 Score=84.14 Aligned_cols=98 Identities=26% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|..|+|++...+.. ...
T Consensus 163 ~gktvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~~--------------------------~~~---- 206 (351)
T 3jtm_A 163 EGKTIGTVGAGRIGKLLLQRLKPF-G-----CNLLYHDRLQMAPELE--------------------------KET---- 206 (351)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGG-C-----CEEEEECSSCCCHHHH--------------------------HHH----
T ss_pred cCCEEeEEEeCHHHHHHHHHHHHC-C-----CEEEEeCCCccCHHHH--------------------------HhC----
Confidence 348999999999999999999887 8 8999999986433210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+....++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|
T Consensus 207 -------------------------g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG 258 (351)
T 3jtm_A 207 -------------------------GAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK---GVLIVNNARG 258 (351)
T ss_dssp -------------------------CCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCT---TEEEEECSCG
T ss_pred -------------------------CCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCC---CCEEEECcCc
Confidence 2334467888999999999999964 333333 334445676 7888888877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=...
T Consensus 259 ~~vd 262 (351)
T 3jtm_A 259 AIME 262 (351)
T ss_dssp GGBC
T ss_pred hhhC
Confidence 5443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-06 Score=78.46 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|||+|||+|.+|.+++..|+.. |.+ .+|.++|+++++++
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~-~~~---~ei~L~Di~~~~~~ 45 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQ-SIV---DELVIIDLDTEKVR 45 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-CSC---SEEEEECSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHhh
Confidence 48999999999999999999988 722 48999999976554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.7e-07 Score=82.54 Aligned_cols=94 Identities=19% Similarity=0.327 Sum_probs=65.4
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....++|+|||+|.||..++..|++..|. .+|.+|+|++++.+++.++ +.
T Consensus 132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~----~~V~v~dr~~~~~~~l~~~----------------------~~---- 181 (312)
T 2i99_A 132 PPSSEVLCILGAGVQAYSHYEIFTEQFSF----KEVRIWNRTKENAEKFADT----------------------VQ---- 181 (312)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHCCC----SEEEEECSSHHHHHHHHHH----------------------SS----
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHHhCCC----cEEEEEcCCHHHHHHHHHH----------------------hh----
Confidence 34568999999999999999999875231 4899999998765432100 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+...++++++++++|+|++++|+. +.++.. +++++ +++|+++
T Consensus 182 --------------------------~~~~~~~~~~e~v~~aDiVi~atp~~--~~v~~~--~~l~~---g~~vi~~ 225 (312)
T 2i99_A 182 --------------------------GEVRVCSSVQEAVAGADVIITVTLAT--EPILFG--EWVKP---GAHINAV 225 (312)
T ss_dssp --------------------------SCCEECSSHHHHHTTCSEEEECCCCS--SCCBCG--GGSCT---TCEEEEC
T ss_pred --------------------------CCeEEeCCHHHHHhcCCEEEEEeCCC--CcccCH--HHcCC---CcEEEeC
Confidence 01445678888899999999999963 333332 45666 6777664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.9e-06 Score=66.76 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.++|.|+|+|.+|..+|..|.+. | ++|+++++++++++.
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~ 45 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLAS-D-----IPLVVIETSRTRVDE 45 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 347899999999999999999998 8 899999999987654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=77.09 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=67.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecC--CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP--GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~--~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+||+|||+|.||+++|..++.+ | + +|+++|++ ++.++... .-+... .+..
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~-g-----~~~v~l~D~~~~~~~~~g~a-----~dl~~~-------------~~~~-- 61 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQK-E-----LADVVLVDIPQLENPTKGKA-----LDMLEA-------------SPVQ-- 61 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCGGGHHHHHHHH-----HHHHHH-------------HHHH--
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeccchHHHHHHhh-----hhHHHh-------------hhhc--
Confidence 47999999999999999999998 8 7 99999999 44332211 001100 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRY 183 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~ 183 (303)
+ ....+..++|. +++++||+||++... ..++++.+++.++
T Consensus 62 --~---------------------~~~~i~~t~d~-~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~ 117 (315)
T 3tl2_A 62 --G---------------------FDANIIGTSDY-ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117 (315)
T ss_dssp --T---------------------CCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c---------------------CCCEEEEcCCH-HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00256667775 468999999999722 1245666666666
Q ss_pred hhccCCCCEEEEeeccC
Q 022050 184 WKERITVPVIISLAKGV 200 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi 200 (303)
.+ +++++..+|..
T Consensus 118 ~p----~a~vlvvsNPv 130 (315)
T 3tl2_A 118 SP----NAIIVVLTNPV 130 (315)
T ss_dssp CT----TCEEEECCSSH
T ss_pred CC----CeEEEECCChH
Confidence 43 57788777753
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.6e-07 Score=83.32 Aligned_cols=95 Identities=22% Similarity=0.371 Sum_probs=68.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|+++..+. ..
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 177 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASAL-G-----MHVIGVNTTGHPADH--------------------------FH------- 177 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSCCCCTT--------------------------CS-------
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-C-----CEEEEECCCcchhHh--------------------------Hh-------
Confidence 47999999999999999999887 8 899999998753221 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 178 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~---gailIN~aRG~ 230 (324)
T 3evt_A 178 ------------------------ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQ---QPMLINIGRGP 230 (324)
T ss_dssp ------------------------EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCS---CCEEEECSCGG
T ss_pred ------------------------hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCC---CCEEEEcCCCh
Confidence 0112245677889999999999964 344443 344455676 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 231 ~vd 233 (324)
T 3evt_A 231 AVD 233 (324)
T ss_dssp GBC
T ss_pred hhh
Confidence 443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.2e-07 Score=88.66 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|+|||.|.||.++|..+... | .+|+.|+++... +.. ...
T Consensus 141 ~g~~vgIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~a--------------------------~~~---- 183 (529)
T 1ygy_A 141 FGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSP-ARA--------------------------AQL---- 183 (529)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCH-HHH--------------------------HHH----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hHH--------------------------Hhc----
Confidence 348999999999999999999987 8 899999998632 110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH-HHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~-l~~~l~~~~~~~iivs~~nG 199 (303)
.+... ++++++++||+|++++|.. .+..++.+ +.+.+++ +++++.+.+|
T Consensus 184 -------------------------g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~---g~ilin~arg 234 (529)
T 1ygy_A 184 -------------------------GIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAARG 234 (529)
T ss_dssp -------------------------TCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCT
T ss_pred -------------------------CcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCC---CCEEEECCCC
Confidence 12232 6778889999999999998 67777654 5666776 7888888877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
-...
T Consensus 235 ~iv~ 238 (529)
T 1ygy_A 235 GLVD 238 (529)
T ss_dssp TSBC
T ss_pred chhh
Confidence 5543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.6e-07 Score=73.11 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=63.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||.+++..|+.. | ++|++|+|++++.+++..+ +. .
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~-g-----~~v~v~~r~~~~~~~~a~~----------------------~~-~----- 66 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP-Q-----YKVTVAGRNIDHVRAFAEK----------------------YE-Y----- 66 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT-T-----CEEEEEESCHHHHHHHHHH----------------------HT-C-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHHHH----------------------hC-C-----
Confidence 48999999999999999999887 8 6799999998765432100 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
......++.++++++|+||.++|.... ++. ..++++ +.+++.+..
T Consensus 67 ------------------------~~~~~~~~~~~~~~~Divi~at~~~~~--~~~--~~~l~~---g~~vid~~~ 111 (144)
T 3oj0_A 67 ------------------------EYVLINDIDSLIKNNDVIITATSSKTP--IVE--ERSLMP---GKLFIDLGN 111 (144)
T ss_dssp ------------------------EEEECSCHHHHHHTCSEEEECSCCSSC--SBC--GGGCCT---TCEEEECCS
T ss_pred ------------------------ceEeecCHHHHhcCCCEEEEeCCCCCc--Eee--HHHcCC---CCEEEEccC
Confidence 123446777888999999999998631 111 134454 667766543
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=9e-07 Score=82.56 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec-CCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR-PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.-++|+|||.|.||.++|..+... | ++|..|+| +++.... ...
T Consensus 145 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~~---------------------------~~~--- 188 (320)
T 1gdh_A 145 DNKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSDE---------------------------ASY--- 188 (320)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHHH---------------------------HHH---
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcChhhh---------------------------hhc---
Confidence 348999999999999999999887 8 89999999 7753110 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~n 198 (303)
.+....++++++++||+|++++|.. .++.++ +...+.+++ ++++|.+..
T Consensus 189 --------------------------g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~---gailIn~ar 239 (320)
T 1gdh_A 189 --------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTAR 239 (320)
T ss_dssp --------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCC---CcEEEECCC
Confidence 1233346778888999999999975 345444 334455676 788888877
Q ss_pred c
Q 022050 199 G 199 (303)
Q Consensus 199 G 199 (303)
|
T Consensus 240 g 240 (320)
T 1gdh_A 240 G 240 (320)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-06 Score=81.91 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=69.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|++...+. ..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 213 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGF-G-----LAIHYHNRTRLSHAL--------------------------EE------- 213 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH--------------------------HT-------
T ss_pred CCEEEEEEeChhHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------hc-------
Confidence 47999999999999999999877 8 899999998643211 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 214 ------------------------g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 266 (345)
T 4g2n_A 214 ------------------------GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPE---GAVVINISRGD 266 (345)
T ss_dssp ------------------------TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 1233457888899999999999963 344433 334455676 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 267 ~vd 269 (345)
T 4g2n_A 267 LIN 269 (345)
T ss_dssp GBC
T ss_pred hhC
Confidence 544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=66.56 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=35.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++|.|+|+|.+|..+|..|.+. | ++|++++++++.++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~-g-----~~V~~id~~~~~~~~ 44 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA-G-----KKVLAVDKSKEKIEL 44 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHH
Confidence 57899999999999999999998 8 899999999876654
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=3.4e-06 Score=79.10 Aligned_cols=108 Identities=10% Similarity=0.058 Sum_probs=70.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
...+||+|||+|.||.++|..++.+ |.. .++.++|+++++++....+ ++ +..
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~g~a~D-----L~-----------------~~~-- 68 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMK-DLA---DELALVDVIEDKLKGEMMD-----LQ-----------------HGS-- 68 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHHHHHH-----HH-----------------HTG--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEeCChHHHHHHHHh-----hh-----------------hhh--
Confidence 4568999999999999999999998 721 3899999987765431100 11 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHh
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYW 184 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l 184 (303)
.+. ....+..++|.+ ++++||+||++. |. ..++++.+.+.++.
T Consensus 69 ----~~~----------------~~~~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~ 127 (331)
T 4aj2_A 69 ----LFL----------------KTPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127 (331)
T ss_dssp ----GGC----------------SCCEEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred ----hcc----------------CCCeEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 000 001345567776 689999999986 22 13566667777764
Q ss_pred hccCCCCEEEEeeccCc
Q 022050 185 KERITVPVIISLAKGVE 201 (303)
Q Consensus 185 ~~~~~~~iivs~~nGi~ 201 (303)
+ +++++..+|.+.
T Consensus 128 -p---~a~vlvvtNPvd 140 (331)
T 4aj2_A 128 -P---QCKLLIVSNPVD 140 (331)
T ss_dssp -T---TCEEEECSSSHH
T ss_pred -C---CeEEEEecChHH
Confidence 3 578888887654
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-06 Score=81.86 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=66.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | ++|..|+|+++.... ...
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~~---- 183 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAM-G-----MKVLAYDILDIREKA---------------------------EKI---- 183 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH---------------------------HHT----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCcchhHH---------------------------Hhc----
Confidence 348999999999999999999887 8 899999998763210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.... .++++.++++|+|++++|... ++.++ ++....+++ ++++|.+..|
T Consensus 184 -------------------------g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~---ga~lIn~arg 234 (313)
T 2ekl_A 184 -------------------------NAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD---NVIIVNTSRA 234 (313)
T ss_dssp -------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCT---TEEEEESSCG
T ss_pred -------------------------Ccee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCC---CCEEEECCCC
Confidence 1222 367788889999999999753 43333 334445676 7888887776
Q ss_pred C
Q 022050 200 V 200 (303)
Q Consensus 200 i 200 (303)
=
T Consensus 235 ~ 235 (313)
T 2ekl_A 235 V 235 (313)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=83.56 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=69.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|..|+|++...+. ....
T Consensus 190 ~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~~--------------------------~~~~---- 233 (393)
T 2nac_A 190 EAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKEL---- 233 (393)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHHH----
T ss_pred CCCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEEcCCccchhh--------------------------Hhhc----
Confidence 448999999999999999999877 8 899999998643221 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+....++++.+++||+|++++|.. .++.++ ++....+++ ++++|.+..|
T Consensus 234 -------------------------G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG 285 (393)
T 2nac_A 234 -------------------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTARG 285 (393)
T ss_dssp -------------------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECSCG
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCC---CCEEEECCCc
Confidence 2333356788889999999999964 344455 344455676 7888888877
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
=..
T Consensus 286 ~~v 288 (393)
T 2nac_A 286 KLC 288 (393)
T ss_dssp GGB
T ss_pred hHh
Confidence 433
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=75.33 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=68.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||.|+|+|.+|..+|..|.+. | ++|+++++++++++.+..+ . ....+ .++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~l~~~-----~---------------~~~~i---~gd 51 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR-K-----YGVVIINKDRELCEEFAKK-----L---------------KATII---HGD 51 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHHHHHH-----S---------------SSEEE---ESC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----c---------------CCeEE---EcC
Confidence 7999999999999999999998 8 8999999999876542110 0 00000 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a-~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..-...+.++ +++||+||++++.......+..+.+.+.+ ...+++.++.-..
T Consensus 52 ------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~iia~~~~~~~ 104 (218)
T 3l4b_C 52 ------------------------GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFG---VKRVVSLVNDPGN 104 (218)
T ss_dssp ------------------------TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSC---CCEEEECCCSGGG
T ss_pred ------------------------CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcC---CCeEEEEEeCcch
Confidence 0000113333 67899999999999877777666665444 4566766665443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=82.81 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=69.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.-++|+|||.|.||..+|..+... | .+ |..|+|++...+.. ..
T Consensus 163 ~g~tvgIIG~G~IG~~vA~~l~~~-G-----~~~V~~~d~~~~~~~~~--------------------------~~---- 206 (364)
T 2j6i_A 163 EGKTIATIGAGRIGYRVLERLVPF-N-----PKELLYYDYQALPKDAE--------------------------EK---- 206 (364)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGG-C-----CSEEEEECSSCCCHHHH--------------------------HH----
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCCccchhHH--------------------------Hh----
Confidence 448999999999999999999877 8 86 99999987543210 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~n 198 (303)
..+....++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..
T Consensus 207 -------------------------~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn~ar 258 (364)
T 2j6i_A 207 -------------------------VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK---GAWLVNTAR 258 (364)
T ss_dssp -------------------------TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred -------------------------cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCC---CCEEEECCC
Confidence 02333457888889999999999986 344444 334455666 788888887
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
|=..
T Consensus 259 G~~v 262 (364)
T 2j6i_A 259 GAIC 262 (364)
T ss_dssp GGGB
T ss_pred Cchh
Confidence 7433
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=82.65 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
+-.-++|+|||.|.||..+|..+... | .+|..|+++++.... ...
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~---------------------------~~~-- 209 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGVE---------------------------RAL-- 209 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTHH---------------------------HHH--
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchhhH---------------------------hhc--
Confidence 33458999999999999999999887 8 899999987642100 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~ 197 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+.
T Consensus 210 ---------------------------g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~a 259 (347)
T 1mx3_A 210 ---------------------------GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTA 259 (347)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECS
T ss_pred ---------------------------CCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCC---CCEEEECC
Confidence 1233346778888999999999985 445444 344445676 78888888
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
.|=..
T Consensus 260 rg~~v 264 (347)
T 1mx3_A 260 RGGLV 264 (347)
T ss_dssp CTTSB
T ss_pred CChHH
Confidence 77444
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=79.82 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=67.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|..|+|+++. +.. ...
T Consensus 141 ~g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~-~~~--------------------------~~~---- 183 (307)
T 1wwk_A 141 EGKTIGIIGFGRIGYQVAKIANAL-G-----MNILLYDPYPNE-ERA--------------------------KEV---- 183 (307)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HHH--------------------------HHT----
T ss_pred CCceEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCCCh-hhH--------------------------hhc----
Confidence 347999999999999999999887 8 899999998764 110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.. .++++++++||+|++++|... ++.++ ++....+++ ++++|.+..|
T Consensus 184 -------------------------g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~arg 234 (307)
T 1wwk_A 184 -------------------------NGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK---TAILINTSRG 234 (307)
T ss_dssp -------------------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCT---TCEEEECSCG
T ss_pred -------------------------Cccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCC---CeEEEECCCC
Confidence 1222 267788889999999999753 44444 334455676 7888888776
Q ss_pred C
Q 022050 200 V 200 (303)
Q Consensus 200 i 200 (303)
=
T Consensus 235 ~ 235 (307)
T 1wwk_A 235 P 235 (307)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-06 Score=68.54 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=55.6
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.+.+|+|||+ |.||..++..|.+. | ++|+.++++.+.+ .
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~-G-----~~V~~vnp~~~~i-----------------------------~-- 55 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDEI-----------------------------E-- 55 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEE-----------------------------T--
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHC-C-----CEEEEeCCCCCeE-----------------------------C--
Confidence 4588999999 99999999999988 8 7755554443211 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
..++..+++++.+.+|++++++|+....++++++..
T Consensus 56 -----------------------------G~~~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~ 91 (138)
T 1y81_A 56 -----------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE 91 (138)
T ss_dssp -----------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred -----------------------------CeeecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 233344566666679999999999999999988665
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=7.7e-06 Score=76.50 Aligned_cols=83 Identities=19% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHh-cCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
....++||+|||+|.||..++..+.+. .+ .+++ ++++++++++++. ..
T Consensus 9 ~~~~~~rvgiiG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~~-------------------------~~ 58 (354)
T 3q2i_A 9 ITDRKIRFALVGCGRIANNHFGALEKHADR-----AELIDVCDIDPAALKAAV-------------------------ER 58 (354)
T ss_dssp CCSSCEEEEEECCSTTHHHHHHHHHHTTTT-----EEEEEEECSSHHHHHHHH-------------------------HH
T ss_pred CCCCcceEEEEcCcHHHHHHHHHHHhCCCC-----eEEEEEEcCCHHHHHHHH-------------------------HH
Confidence 334568999999999999999988875 13 6654 8899887654311 00
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.++...+|+++.+. ++|+|++|+|+....+++.+.
T Consensus 59 -----------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 95 (354)
T 3q2i_A 59 -----------------------------TGARGHASLTDMLAQTDADIVILTTPSGLHPTQSIEC 95 (354)
T ss_dssp -----------------------------HCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHHH
T ss_pred -----------------------------cCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHHH
Confidence 03456678888775 799999999998776666554
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-06 Score=65.37 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=34.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|||+|+|+|.||..++..|.+. |. ++|++++|++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~-g~----~~v~~~~r~~~~~~ 43 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTS-SN----YSVTVADHDLAALA 43 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHC-SS----EEEEEEESCHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-CC----ceEEEEeCCHHHHH
Confidence 47999999999999999999988 72 68999999987654
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-06 Score=81.37 Aligned_cols=89 Identities=18% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | ++|..|+|+++ +. +.
T Consensus 123 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~dr~~~--~~----------------------------~~---- 162 (303)
T 1qp8_A 123 QGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPK--EG----------------------------PW---- 162 (303)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCC--CS----------------------------SS----
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcc--cc----------------------------Cc----
Confidence 348999999999999999999887 8 89999999864 10 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nG 199 (303)
. ...++++++++||+|++++|.. .++.++. +....+++ ++++|.+..|
T Consensus 163 --------------------------~-~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~---gailin~srg 212 (303)
T 1qp8_A 163 --------------------------R-FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRA 212 (303)
T ss_dssp --------------------------C-CBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred --------------------------c-cCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCC---CCEEEECCCC
Confidence 0 1134667889999999999986 4555553 45556776 7888887776
Q ss_pred C
Q 022050 200 V 200 (303)
Q Consensus 200 i 200 (303)
=
T Consensus 213 ~ 213 (303)
T 1qp8_A 213 E 213 (303)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-06 Score=80.01 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=33.7
Q ss_pred ccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 37 GKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 37 ~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...+.+.|||+|+|||.+|..+|..|++. ++|++++++.+++++
T Consensus 10 ~~~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~~~~~~ 53 (365)
T 3abi_A 10 HHIEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNNENLEK 53 (365)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred ccccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCHHHHHH
Confidence 34456779999999999999999999765 789999999876654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.8e-06 Score=75.48 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.+|.+++..++.. +.+ .++.++|+++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~k~~ 39 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-GVA---REVVLVDLDRKLAQ 39 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHHH
Confidence 7999999999999999999987 632 48999999987654
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=81.17 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=69.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|+... +. ...
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 200 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAF-G-----MNVLVWGRENSK-ER--------------------------ARA------ 200 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSHHHH-HH--------------------------HHH------
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEECCCCCH-HH--------------------------HHh------
Confidence 47999999999999999999887 8 899999987521 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..++...++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 201 -----------------------~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~ 254 (352)
T 3gg9_A 201 -----------------------DGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP---TALFVNTSRAE 254 (352)
T ss_dssp -----------------------TTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCGG
T ss_pred -----------------------cCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCC---CcEEEECCCch
Confidence 02344567888899999999999964 344333 334455676 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 255 ~vd 257 (352)
T 3gg9_A 255 LVE 257 (352)
T ss_dssp GBC
T ss_pred hhc
Confidence 444
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-05 Score=73.65 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..+||+|||+ |.+|+++|..++.. |. . .+|.++|+++++++.... -++. .+ + +
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~~-g~-~--~evvLiDi~~~k~~g~a~-----DL~~----------~~-~-~----- 60 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAMM-RL-T--PNLCLYDPFAVGLEGVAE-----EIRH----------CG-F-E----- 60 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHHT-TC-C--SCEEEECSCHHHHHHHHH-----HHHH----------HC-C-T-----
T ss_pred CCCEEEEECCCChHHHHHHHHHHhc-CC-C--CEEEEEeCCchhHHHHHH-----hhhh----------Cc-C-C-----
Confidence 3589999998 99999999999988 72 1 479999998875542110 0110 00 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHh
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYW 184 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l 184 (303)
..++.+++|..+++++||+||++. |. ..++++.+++.++.
T Consensus 61 ------------------------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~ 116 (343)
T 3fi9_A 61 ------------------------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYC 116 (343)
T ss_dssp ------------------------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 025778889888899999999986 22 12455666666665
Q ss_pred hccCCCCE-EEEeeccCc
Q 022050 185 KERITVPV-IISLAKGVE 201 (303)
Q Consensus 185 ~~~~~~~i-ivs~~nGi~ 201 (303)
+ +++ ++..+|.+.
T Consensus 117 p----~a~~vlvvsNPvd 130 (343)
T 3fi9_A 117 P----DCKHVIIIFNPAD 130 (343)
T ss_dssp T----TCCEEEECSSSHH
T ss_pred c----CcEEEEEecCchH
Confidence 4 454 667777643
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=72.99 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=68.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||||.+|+++|..|+.+ +.. .++.|+|.+++.++... .-+.. ....+.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~-~~~---~el~L~Di~~~~~~G~a-----~DL~h----------~~~~~~-------- 53 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVGEA-----MDLAH----------AAAGID-------- 53 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHHHH-----HHHHH----------HHGGGT--------
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCCCcchhhh-----hhhhc----------ccccCC--------
Confidence 8999999999999999999988 732 47999999876543210 00110 000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch--------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~--------------~~~~vl~~l~~~l~~~ 187 (303)
. ...+..++|.+ ++++||+||++- |.+ .++++.+++.++.+
T Consensus 54 --~------------------~~~i~~~~d~~-~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-- 110 (294)
T 2x0j_A 54 --K------------------YPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (294)
T ss_dssp --C------------------CCEEEEESCGG-GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred --C------------------CCeEecCCCHH-HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 0 01355566765 689999999976 221 34556666666544
Q ss_pred CCCCEEEEeeccCcc
Q 022050 188 ITVPVIISLAKGVEA 202 (303)
Q Consensus 188 ~~~~iivs~~nGi~~ 202 (303)
+++++..+|.+..
T Consensus 111 --~aivlvvsNPvd~ 123 (294)
T 2x0j_A 111 --ESKILVVTNPMDV 123 (294)
T ss_dssp --TCEEEECSSSHHH
T ss_pred --ceEEEEecCcchh
Confidence 5788888887654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=70.53 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=59.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|.||..++..+... | +++ .+|++++. .+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~-g-----~~lv~v~d~~~~-~~------------------------------------ 37 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN-G-----FEIAAILDVRGE-HE------------------------------------ 37 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC-CT------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEEEecCcc-hh------------------------------------
Confidence 6999999999999999999876 7 776 68888742 11
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
. ..+|+++.+ .++|+|++++|+....+++.. .+.. +..+++...+
T Consensus 38 ------------------------~--~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~---~l~~---G~~vv~~~~~ 83 (236)
T 2dc1_A 38 ------------------------K--MVRGIDEFLQREMDVAVEAASQQAVKDYAEK---ILKA---GIDLIVLSTG 83 (236)
T ss_dssp ------------------------T--EESSHHHHTTSCCSEEEECSCHHHHHHHHHH---HHHT---TCEEEESCGG
T ss_pred ------------------------h--hcCCHHHHhcCCCCEEEECCCHHHHHHHHHH---HHHC---CCcEEEECcc
Confidence 1 234566766 689999999999876666643 3444 6677765543
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-06 Score=81.45 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=68.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|..|+|++... ..
T Consensus 144 ~gktlGiIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~------ 183 (404)
T 1sc6_A 144 RGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLP----------------------------LG------ 183 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCC----------------------------CT------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEEcCCchhc----------------------------cC------
Confidence 348999999999999999999887 8 8999999975310 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
......+++++++.||+|++++|.. .++.++ ++....+++ ++++|.+..|
T Consensus 184 -------------------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIN~aRg 235 (404)
T 1sc6_A 184 -------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINASRG 235 (404)
T ss_dssp -------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECSCS
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCC---CeEEEECCCC
Confidence 1233456888889999999999986 344444 334445676 7888888777
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
=..
T Consensus 236 ~~v 238 (404)
T 1sc6_A 236 TVV 238 (404)
T ss_dssp SSB
T ss_pred hHH
Confidence 444
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.7e-06 Score=80.32 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|+|||.|.||..+|..+... | .+|..|+|+++..+ .
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~------------------------------~---- 182 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAF-G-----MRVVYHARTPKPLP------------------------------Y---- 182 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSS------------------------------S----
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC-C-----CEEEEECCCCcccc------------------------------c----
Confidence 347999999999999999999887 8 89999999864210 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHH-HHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~-~l~~~l~~~~~~~iivs~~nG 199 (303)
. ..++++.+++||+|++++|.. ..+.++. +....+++ ++++|.+..|
T Consensus 183 -------------------------~---~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~srg 231 (311)
T 2cuk_A 183 -------------------------P---FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKR---GAILLNTARG 231 (311)
T ss_dssp -------------------------C---BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred -------------------------c---cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCC---CcEEEECCCC
Confidence 0 135667788999999999987 4555553 34445676 7888887776
Q ss_pred Cc
Q 022050 200 VE 201 (303)
Q Consensus 200 i~ 201 (303)
-.
T Consensus 232 ~~ 233 (311)
T 2cuk_A 232 AL 233 (311)
T ss_dssp GG
T ss_pred Cc
Confidence 33
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.3e-06 Score=80.21 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=68.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|++...+. ....
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~--------------------------~~~~----- 187 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGW-G-----ATLQYHEAKALDTQT--------------------------EQRL----- 187 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTS-C-----CEEEEECSSCCCHHH--------------------------HHHH-----
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCCCcHhH--------------------------HHhc-----
Confidence 48999999999999999999876 8 899999998743221 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.. .++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 188 ------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg~ 239 (330)
T 4e5n_A 188 ------------------------GLRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRP---GALLVNPCRGS 239 (330)
T ss_dssp ------------------------TEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------Ccee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 2222 36788889999999999964 334333 344555676 78888888774
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 240 ~vd 242 (330)
T 4e5n_A 240 VVD 242 (330)
T ss_dssp GBC
T ss_pred hhC
Confidence 443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=63.77 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=33.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++|.|+|+|.+|..++..|.+. | ++|++++++++.++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~-g-----~~v~~~d~~~~~~~ 43 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVN 43 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46799999999999999999998 8 89999999876554
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-06 Score=80.57 Aligned_cols=92 Identities=23% Similarity=0.304 Sum_probs=65.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|++++... ..
T Consensus 156 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~yd~~~~~~----------------------------~~------- 194 (416)
T 3k5p_A 156 GKTLGIVGYGNIGSQVGNLAESL-G-----MTVRYYDTSDKLQ----------------------------YG------- 194 (416)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCCCC----------------------------BT-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCcchhc----------------------------cc-------
Confidence 37999999999999999999877 8 8999999975311 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|-
T Consensus 195 ------------------------~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~---gailIN~aRG~ 247 (416)
T 3k5p_A 195 ------------------------NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKK---GAFLINNARGS 247 (416)
T ss_dssp ------------------------TBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCT---TEEEEECSCTT
T ss_pred ------------------------CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCC---CcEEEECCCCh
Confidence 1223357888899999999999985 344444 334445676 78888888774
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 248 vv 249 (416)
T 3k5p_A 248 DV 249 (416)
T ss_dssp SB
T ss_pred hh
Confidence 44
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.3e-06 Score=68.11 Aligned_cols=76 Identities=18% Similarity=-0.026 Sum_probs=54.6
Q ss_pred CceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+.+|+|||+ |.||..++..|.+. | ++|+.++++.. -+. ..
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~-G-----~~v~~vnp~~~-g~~--------------------------i~--- 56 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQ-G-----YHVIPVSPKVA-GKT--------------------------LL--- 56 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHH-T-----CCEEEECSSST-TSE--------------------------ET---
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHC-C-----CEEEEeCCccc-ccc--------------------------cC---
Confidence 467999999 89999999999998 8 66555554430 000 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
..++..++++..+.+|++++++|+....++++++..
T Consensus 57 ----------------------------G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~~~~~ 92 (145)
T 2duw_A 57 ----------------------------GQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA 92 (145)
T ss_dssp ----------------------------TEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH
T ss_pred ----------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 223334455555678999999999999999988766
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.3e-06 Score=77.87 Aligned_cols=94 Identities=14% Similarity=0.045 Sum_probs=68.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|..|+|+++.. . ....
T Consensus 164 ~g~tvgIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~-~--------------------------~~~~---- 206 (335)
T 2g76_A 164 NGKTLGILGLGRIGREVATRMQSF-G-----MKTIGYDPIISPE-V--------------------------SASF---- 206 (335)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSCHH-H--------------------------HHHT----
T ss_pred CcCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchh-h--------------------------hhhc----
Confidence 348999999999999999999877 8 8999999987531 1 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+.. .++++++++||+|++++|... ++.++ ++....+++ ++++|.+..|
T Consensus 207 -------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg 257 (335)
T 2g76_A 207 -------------------------GVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKK---GVRVVNCARG 257 (335)
T ss_dssp -------------------------TCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCT---TEEEEECSCT
T ss_pred -------------------------Ccee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCC---CcEEEECCCc
Confidence 1222 367788899999999999863 55555 345555676 7888877766
Q ss_pred Cc
Q 022050 200 VE 201 (303)
Q Consensus 200 i~ 201 (303)
=.
T Consensus 258 ~v 259 (335)
T 2g76_A 258 GI 259 (335)
T ss_dssp TS
T ss_pred cc
Confidence 33
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.07 E-value=2e-05 Score=73.26 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=59.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..|.+..+ .+++ ++++++++++++. .
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a-------------------------~------ 47 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPD-----LELVVIADPFIEGAQRLA-------------------------E------ 47 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECSSHHHHHHHH-------------------------H------
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCC-----cEEEEEECCCHHHHHHHH-------------------------H------
Confidence 5899999999999999999887513 6655 7899887553211 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
. .+....+|+++.+. ++|+|++++|+....+++.+..
T Consensus 48 ---~--------------------~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al 86 (344)
T 3euw_A 48 ---A--------------------NGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITRAV 86 (344)
T ss_dssp ---T--------------------TTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHH
T ss_pred ---H--------------------cCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHH
Confidence 0 02456678888887 7999999999998777666543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-06 Score=81.77 Aligned_cols=95 Identities=19% Similarity=0.298 Sum_probs=67.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | ++|..|+|+++..+. ..
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 180 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHF-G-----MKVLGVSRSGRERAG--------------------------FD------- 180 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCTT--------------------------CS-------
T ss_pred cceEEEEEECHHHHHHHHHHHhC-C-----CEEEEEcCChHHhhh--------------------------hh-------
Confidence 48999999999999999999887 8 899999998742210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
......++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 181 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---gailIN~aRG~ 233 (324)
T 3hg7_A 181 ------------------------QVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKP---GAILFNVGRGN 233 (324)
T ss_dssp ------------------------EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCT---TCEEEECSCGG
T ss_pred ------------------------cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCch
Confidence 0111246788899999999999964 334433 223334566 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 234 ~vd 236 (324)
T 3hg7_A 234 AIN 236 (324)
T ss_dssp GBC
T ss_pred hhC
Confidence 544
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.7e-06 Score=78.80 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=66.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|+++... .. .
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~-----------~~-------------~--------- 186 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPEL-----------EK-------------K--------- 186 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH-----------HH-------------T---------
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcchhH-----------Hh-------------h---------
Confidence 37999999999999999999887 8 89999999875320 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+..++++++++||+|++++|... ++.++ ++....+++ ++++|.+..|=
T Consensus 187 -------------------------~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~arg~ 238 (333)
T 1j4a_A 187 -------------------------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGP 238 (333)
T ss_dssp -------------------------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGG
T ss_pred -------------------------CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCC---CcEEEECCCCc
Confidence 0112357778889999999999653 44444 334445666 78888887764
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 239 ~v 240 (333)
T 1j4a_A 239 LV 240 (333)
T ss_dssp GB
T ss_pred cc
Confidence 33
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.05 E-value=9.3e-06 Score=72.94 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
||||+|+|+|.||..++..+.+. + +++. +++++++. .
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~-~-----~eLva~~d~~~~~--~---------------------------------- 40 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK-G-----HEIVGVIENTPKA--T---------------------------------- 40 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC--------------------------------------
T ss_pred ceEEEEECcCHHHHHHHHHHHhC-C-----CEEEEEEecCccc--c----------------------------------
Confidence 68999999999999999999987 6 5443 35665431 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++.+++|+++.. ++|++|-++.+....+.++ +.. +..+|+.+.|++
T Consensus 41 ------------------------~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-----l~~---g~~vVigTTG~s 87 (243)
T 3qy9_A 41 ------------------------TPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-----EDF---HLPLVVATTGEK 87 (243)
T ss_dssp ------------------------CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-----SCC---CCCEEECCCSSH
T ss_pred ------------------------CCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-----Hhc---CCceEeCCCCCC
Confidence 0233446666666 8999997776665555444 343 556677777876
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e 239 (303)
.+. .+.+.+... ...++..|||+.-
T Consensus 88 ~e~---------~~~l~~aa~----~~~v~~a~N~S~G 112 (243)
T 3qy9_A 88 EKL---------LNKLDELSQ----NMPVFFSANMSYG 112 (243)
T ss_dssp HHH---------HHHHHHHTT----TSEEEECSSCCHH
T ss_pred HHH---------HHHHHHHHh----cCCEEEECCccHH
Confidence 531 123444332 1346889999653
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=73.30 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=58.0
Q ss_pred CceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||...+..+. ...+ .+++ ++++++++++++.+ ..
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a~-------------------------~~--- 69 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSG-----VEVVAVCDIVAGRAQAALD-------------------------KY--- 69 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTT-----EEEEEEECSSTTHHHHHHH-------------------------HH---
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHHHHH-------------------------Hh---
Confidence 489999999999999999998 4213 6655 78999876543210 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
+ ......+|+++.+. +.|+|++++|+....+++.+..
T Consensus 70 -g-----------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al 108 (357)
T 3ec7_A 70 -A-----------------------IEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVAAL 108 (357)
T ss_dssp -T-----------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred -C-----------------------CCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 0 01446678888776 5899999999988776665543
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.5e-06 Score=77.13 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=66.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+|+++... ..
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~----------------------------~~------ 187 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAM-G-----AKVIAYDVAYNPEF----------------------------EP------ 187 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCGGG----------------------------TT------
T ss_pred CCeEEEEecCHHHHHHHHHHhhC-C-----CEEEEECCChhhhh----------------------------hc------
Confidence 37999999999999999999887 8 89999999875210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.... .++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 188 ------------------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~ 239 (343)
T 2yq5_A 188 ------------------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKK---SAYLINCARGE 239 (343)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCGG
T ss_pred ------------------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCC---CcEEEECCCCh
Confidence 1222 27888899999999999963 233332 233344676 78999888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
...
T Consensus 240 ~vd 242 (343)
T 2yq5_A 240 LVD 242 (343)
T ss_dssp GBC
T ss_pred hhh
Confidence 443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=73.25 Aligned_cols=91 Identities=15% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||+|.||.++|..+... | .+|++|+|++++.+.+. ..
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~--------------------------~~---- 197 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-G-----AKVKVGARESDLLARIA--------------------------EM---- 197 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHHH--------------------------HT----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH--------------------------HC----
Confidence 348999999999999999999887 8 89999999876432110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEE--ecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKV--VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~--t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.... ..++++.++++|+|++++|...+.+ +....+++ +.++|.+..|
T Consensus 198 -------------------------g~~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~l~~mk~---~~~lin~ar~ 246 (293)
T 3d4o_A 198 -------------------------GMEPFHISKAAQELRDVDVCINTIPALVVTA---NVLAEMPS---HTFVIDLASK 246 (293)
T ss_dssp -------------------------TSEEEEGGGHHHHTTTCSEEEECCSSCCBCH---HHHHHSCT---TCEEEECSST
T ss_pred -------------------------CCeecChhhHHHHhcCCCEEEECCChHHhCH---HHHHhcCC---CCEEEEecCC
Confidence 0111 1356677889999999999864322 12223565 6788877654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-05 Score=71.92 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=57.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..+.+..+ .+++ ++++++++.+++. ..
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~-------------------------~~----- 47 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNAD-----ARLVAVADAFPAAAEAIA-------------------------GA----- 47 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECSSHHHHHHHH-------------------------HH-----
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCC-----cEEEEEECCCHHHHHHHH-------------------------HH-----
Confidence 4799999999999999999987413 6665 7899887554311 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
.++. .+|+++.+. ++|+|++++|+....+++.+..
T Consensus 48 ------------------------~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al 84 (331)
T 4hkt_A 48 ------------------------YGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIERFA 84 (331)
T ss_dssp ------------------------TTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred ------------------------hCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHH
Confidence 0234 577888776 7999999999988776665543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-05 Score=72.87 Aligned_cols=94 Identities=7% Similarity=0.088 Sum_probs=63.1
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||.. ++..+.+..+ .++. ++++++++++++.+ ..
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a~-------------------------~~--- 52 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSER-----FEFVGAFTPNKVKREKICS-------------------------DY--- 52 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSS-----SEEEEEECSCHHHHHHHHH-------------------------HH---
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHHHH-------------------------Hc---
Confidence 479999999999996 8887876413 5665 78999876543210 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
++...+|+++.++++|+|++++|+....+++.+.. .. +..|+ +-|.+
T Consensus 53 --------------------------~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al---~~---gk~vl-~EKP~ 99 (308)
T 3uuw_A 53 --------------------------RIMPFDSIESLAKKCDCIFLHSSTETHYEIIKILL---NL---GVHVY-VDKPL 99 (308)
T ss_dssp --------------------------TCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHHHH---HT---TCEEE-ECSSS
T ss_pred --------------------------CCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHHHH---HC---CCcEE-EcCCC
Confidence 11125678888889999999999998777666543 33 44433 45555
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 100 ~~ 101 (308)
T 3uuw_A 100 AS 101 (308)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.7e-05 Score=64.18 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=33.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|+|+|+|.||..+|..|.+..| ++|+++++++++++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g-----~~V~vid~~~~~~~~ 78 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG-----KISLGIEIREEAAQQ 78 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC-----SCEEEEESCHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC-----CeEEEEECCHHHHHH
Confidence 4689999999999999999976315 899999999876653
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=69.72 Aligned_cols=95 Identities=15% Similarity=0.279 Sum_probs=60.6
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHH--HHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSRED 102 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~--La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~ 102 (303)
++-++++++.++... .+||+|||+|++|.+++.. +... | ++ |-++|.++++...
T Consensus 70 ~~L~~~~~~~lg~~~--~~rV~IIGAG~~G~~La~~~~~~~~-g-----~~iVg~~D~dp~k~g~--------------- 126 (215)
T 2vt3_A 70 DYLLSFFRKTLDQDE--MTDVILIGVGNLGTAFLHYNFTKNN-N-----TKISMAFDINESKIGT--------------- 126 (215)
T ss_dssp HHHHHHHHHHHHHC-----CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC---------------
T ss_pred HHHHHHHHHHhCcCC--CCEEEEEccCHHHHHHHHHHhcccC-C-----cEEEEEEeCCHHHHHh---------------
Confidence 333455566656543 3789999999999999994 3333 4 44 5578988875421
Q ss_pred HHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHH
Q 022050 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
...++ ++...+++++.+++.|++++|+|+...+++++.+..
T Consensus 127 ----------~i~gv-----------------------------~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~~l~~ 167 (215)
T 2vt3_A 127 ----------EVGGV-----------------------------PVYNLDDLEQHVKDESVAILTVPAVAAQSITDRLVA 167 (215)
T ss_dssp ----------EETTE-----------------------------EEEEGGGHHHHCSSCCEEEECSCHHHHHHHHHHHHH
T ss_pred ----------HhcCC-----------------------------eeechhhHHHHHHhCCEEEEecCchhHHHHHHHHHH
Confidence 11111 233456777777666999999999988888877654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=8e-06 Score=73.44 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=32.6
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||+|||+|.||.+++..|... | .+|++|+|++++.+
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~-g-----~~v~v~~r~~~~~~ 153 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREA-G-----LEVWVWNRTPQRAL 153 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 899999999999999999998 8 78999999986544
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-05 Score=72.98 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=63.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|+|||+|.||.++|..+... | .+|++|+|++++.+.+. + . +.
T Consensus 156 ~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~d~~~~~~~~~~---------~--------------~-g~---- 201 (300)
T 2rir_A 156 HGSQVAVLGLGRTGMTIARTFAAL-G-----ANVKVGARSSAHLARIT---------E--------------M-GL---- 201 (300)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHHH---------H--------------T-TC----
T ss_pred CCCEEEEEcccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------H--------------C-CC----
Confidence 458999999999999999999887 8 89999999876432210 0 0 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
......++++.++++|+|++++|...+.+ +....+++ ++++|.+..|
T Consensus 202 -------------------------~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~~~~mk~---g~~lin~a~g 248 (300)
T 2rir_A 202 -------------------------VPFHTDELKEHVKDIDICINTIPSMILNQ---TVLSSMTP---KTLILDLASR 248 (300)
T ss_dssp -------------------------EEEEGGGHHHHSTTCSEEEECCSSCCBCH---HHHTTSCT---TCEEEECSST
T ss_pred -------------------------eEEchhhHHHHhhCCCEEEECCChhhhCH---HHHHhCCC---CCEEEEEeCC
Confidence 00011456777889999999999854321 22234565 7788877654
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-05 Score=71.95 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=56.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..+.+..+ .+++ ++++++++++++.+ ..
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~~-------------------------~~---- 47 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDD-----AILYAISDVREDRLREMKE-------------------------KL---- 47 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTT-----EEEEEEECSCHHHHHHHHH-------------------------HH----
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCC-----cEEEEEECCCHHHHHHHHH-------------------------Hh----
Confidence 4799999999999999998877413 5655 78998876543110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.-....+|+++.+. ++|+|++|+|+....+++.+.
T Consensus 48 ------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 84 (344)
T 3ezy_A 48 ------------------------GVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIAC 84 (344)
T ss_dssp ------------------------TCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHH
T ss_pred ------------------------CCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHH
Confidence 01235678888776 799999999998776666554
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=9.1e-06 Score=76.13 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=65.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|+++.. ...
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 184 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKG----------------------------DHP------ 184 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSS----------------------------CCT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCcchh----------------------------hHh------
Confidence 47999999999999999999887 8 8999999986421 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.... .++++.+++||+|++++|... ++.++ ++....+++ ++++|.+..|=
T Consensus 185 ------------------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~---ga~lIn~srg~ 236 (333)
T 1dxy_A 185 ------------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARPN 236 (333)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCTT
T ss_pred ------------------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 0122 367788889999999999753 44444 334455676 78888777663
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.5e-05 Score=70.94 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=57.3
Q ss_pred CceEEEECCChHHHHHHHHHH-HhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||..++..+. ...+ .+++ ++++++++.+++.+ .
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~-----~~l~av~d~~~~~~~~~~~-------------------------~---- 47 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSG-----AEIVAVTDVNQEAAQKVVE-------------------------Q---- 47 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSS-----EEEEEEECSSHHHHHHHHH-------------------------H----
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCC-----cEEEEEEcCCHHHHHHHHH-------------------------H----
Confidence 379999999999999999998 4313 5655 78998876543110 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l 180 (303)
+. ....+.+|+++.+++ .|+|++++|+....+++.+.
T Consensus 48 -----~g------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 86 (344)
T 3mz0_A 48 -----YQ------------------LNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKA 86 (344)
T ss_dssp -----TT------------------CCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHH
T ss_pred -----hC------------------CCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHHH
Confidence 00 014566888887765 89999999999877766654
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.1e-06 Score=76.41 Aligned_cols=92 Identities=17% Similarity=0.167 Sum_probs=65.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+... | .+|..|+|+++.. ...
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 185 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGM-G-----ATVIGEDVFEIKG----------------------------IED------ 185 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCS----------------------------CTT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCccHH----------------------------HHh------
Confidence 37999999999999999999887 8 8999999986421 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.. .++++++++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 186 ------------------------~~~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~---ga~lin~srg~ 237 (331)
T 1xdw_A 186 ------------------------YCTQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD---GAILVNCARGQ 237 (331)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCT---TEEEEECSCGG
T ss_pred ------------------------cccc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCC---CcEEEECCCcc
Confidence 0112 36778888999999999974 333333 334445676 78888877764
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 238 ~v 239 (331)
T 1xdw_A 238 LV 239 (331)
T ss_dssp GB
T ss_pred cc
Confidence 33
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=71.14 Aligned_cols=102 Identities=14% Similarity=0.214 Sum_probs=67.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|+|+ |.+|..++..|+.. |.. ++|.++|+++. +. . ... +.+.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~-~~~---~ev~L~Di~~~--~~-----~--a~d---------------L~~~----- 47 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHT--PG-----V--AAD---------------LSHI----- 47 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSH--HH-----H--HHH---------------HTTS-----
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---cEEEEEeCCcc--HH-----H--HHH---------------Hhcc-----
Confidence 79999998 99999999999987 621 58999999872 11 0 000 1000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEE---ecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHHH
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKV---VTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRY 183 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~---t~d~~~a~~~aDlVIiaVp--~--------------~~~~~vl~~l~~~ 183 (303)
..+ .+++. ++|.++++++||+||++.. . ..++++.+.+.++
T Consensus 48 --~~~------------------~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 107 (314)
T 1mld_A 48 --ETR------------------ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH 107 (314)
T ss_dssp --SSS------------------CEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred --CcC------------------ceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 13454 3578888999999999872 2 2356667777776
Q ss_pred hhccCCCCEEEEeeccCcc
Q 022050 184 WKERITVPVIISLAKGVEA 202 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~~ 202 (303)
.+ +..++..+|.+..
T Consensus 108 ~p----~a~viv~sNPv~~ 122 (314)
T 1mld_A 108 CP----DAMICIISNPVNS 122 (314)
T ss_dssp CT----TSEEEECSSCHHH
T ss_pred CC----CeEEEEECCCcch
Confidence 54 5677777776553
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=75.21 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=66.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|+++... +. ...
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 216 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGF-R-----ARIRVFDPWLPR-SM--------------------------LEE------ 216 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTS-C-----CEEEEECSSSCH-HH--------------------------HHH------
T ss_pred CCEEEEecCCcccHHHHHhhhhC-C-----CEEEEECCCCCH-HH--------------------------Hhh------
Confidence 37999999999999999998776 7 899999998532 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..+.. .++++.+++||+|++++|.. .++.++ ++....+++ ++++|.+..|=
T Consensus 217 -----------------------~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 269 (365)
T 4hy3_A 217 -----------------------NGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRR---GAAFILLSRAD 269 (365)
T ss_dssp -----------------------TTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCT---TCEEEECSCGG
T ss_pred -----------------------cCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCC---CcEEEECcCCc
Confidence 01222 46888899999999999975 355444 344455677 78999888774
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 270 ~vd 272 (365)
T 4hy3_A 270 VVD 272 (365)
T ss_dssp GSC
T ss_pred hhC
Confidence 443
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.4e-05 Score=70.16 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=56.2
Q ss_pred CCceEEEECCChHHHHHHHHHH-HhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La-~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||+|.||..++..+. ...+ .+ |.++++++++++++. +
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~-----~~~vav~d~~~~~~~~~a-------------------------~---- 52 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQG-----VKLVAACALDSNQLEWAK-------------------------N---- 52 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSS-----EEEEEEECSCHHHHHHHH-------------------------H----
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHHH-------------------------H----
Confidence 4589999999999999999987 4313 56 457899886553211 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+ ++ .+.+|.++.+. ++|+|++++|+....+++.+.
T Consensus 53 -----~~--------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 91 (346)
T 3cea_A 53 -----EL--------------------GVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYA 91 (346)
T ss_dssp -----TT--------------------CCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHHH
T ss_pred -----Hh--------------------CCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHHH
Confidence 00 12 35577888775 699999999998776665543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.6e-05 Score=72.27 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|||+|.||..++..|.+..+ .+|+ ++++++++.+++.+ ..
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~~~-------------------------~~--- 50 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQ-----AEVRGIASRRLENAQKMAK-------------------------EL--- 50 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSS-----EEEEEEBCSSSHHHHHHHH-------------------------HT---
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCC-----cEEEEEEeCCHHHHHHHHH-------------------------Hc---
Confidence 35899999999999999999987513 5665 78998876543110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
++ .+.+|.++.+. ++|+|++++|+....+++.+.
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 87 (330)
T 3e9m_A 51 --------------------------AIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLA 87 (330)
T ss_dssp --------------------------TCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHH
T ss_pred --------------------------CCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHH
Confidence 11 24467877776 789999999999877666554
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=8.7e-06 Score=76.83 Aligned_cols=100 Identities=11% Similarity=0.119 Sum_probs=65.2
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....++|+|||+|.||.+++..|....+ ..+|.+|+|++++.+++.++ +. ...+
T Consensus 126 ~~~~~~v~iIGaG~~a~~~a~al~~~~~----~~~V~V~~r~~~~a~~la~~-----~~--------------~~~g--- 179 (350)
T 1x7d_A 126 RPNARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKLIAN-----LK--------------EYSG--- 179 (350)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHHHHH-----HT--------------TCTT---
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHH-----HH--------------hccC---
Confidence 3456899999999999999988765312 16899999998876542210 00 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+...++++++++++|+|+.|+|+.....++. ..++++ ++.|+.+
T Consensus 180 --------------------------~~~~~~~~~~eav~~aDiVi~aTps~~~~pvl~--~~~l~~---G~~V~~v 225 (350)
T 1x7d_A 180 --------------------------LTIRRASSVAEAVKGVDIITTVTADKAYATIIT--PDMLEP---GMHLNAV 225 (350)
T ss_dssp --------------------------CEEEECSSHHHHHTTCSEEEECCCCSSEEEEEC--GGGCCT---TCEEEEC
T ss_pred --------------------------ceEEEeCCHHHHHhcCCEEEEeccCCCCCceec--HHHcCC---CCEEEEC
Confidence 024456788889999999999999863222222 235566 6666544
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.6e-05 Score=69.96 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=63.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..+... + +.++ -++++++++++++. .
T Consensus 5 ~~rigiiG~G~ig~~~~~~l~~~-~----~~~~~av~d~~~~~~~~~a-------------------------~------ 48 (329)
T 3evn_A 5 KVRYGVVSTAKVAPRFIEGVRLA-G----NGEVVAVSSRTLESAQAFA-------------------------N------ 48 (329)
T ss_dssp CEEEEEEBCCTTHHHHHHHHHHH-C----SEEEEEEECSCSSTTCC----------------------------------
T ss_pred ceEEEEEechHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHHH-------------------------H------
Confidence 58999999999999999998876 4 1454 47899887654311 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
++ ++ .+.+|.++.+. +.|+|++++|+....+++.+.. .. +..|+ +-|
T Consensus 49 ---~~--------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~Vl-~EK 98 (329)
T 3evn_A 49 ---KY--------------------HLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAAL---LA---GKHVL-VEK 98 (329)
T ss_dssp ---CC--------------------CCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-EES
T ss_pred ---Hc--------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---HC---CCeEE-Ecc
Confidence 00 12 25678888876 7899999999987766665543 33 44443 455
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 99 P~a~ 102 (329)
T 3evn_A 99 PFTL 102 (329)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 5544
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.4e-05 Score=76.33 Aligned_cols=92 Identities=23% Similarity=0.247 Sum_probs=65.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.||..+|..+..- | .+|..|++..+..+ .
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~----------------------------~------- 157 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEAL-G-----IRTLLCDPPRAARG----------------------------D------- 157 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHTT----------------------------C-------
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCChHHhc----------------------------c-------
Confidence 47999999999999999999887 8 89999998532110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEEe
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIISL 196 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs~ 196 (303)
.. ...++++++++||+|++++|... ++.++ ++....+++ ++++|.+
T Consensus 158 ------------------------~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 209 (381)
T 3oet_A 158 ------------------------EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKP---GAILINA 209 (381)
T ss_dssp ------------------------CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCT---TEEEEEC
T ss_pred ------------------------Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCC---CcEEEEC
Confidence 00 12467888899999999998542 23333 233344666 7888888
Q ss_pred eccCccc
Q 022050 197 AKGVEAE 203 (303)
Q Consensus 197 ~nGi~~~ 203 (303)
..|=..+
T Consensus 210 aRG~vvd 216 (381)
T 3oet_A 210 CRGPVVD 216 (381)
T ss_dssp SCGGGBC
T ss_pred CCCcccC
Confidence 8775443
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=71.50 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=55.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..+.+..+ .+++ ++++++++++++.+ ..
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~-----~~lvav~d~~~~~~~~~~~-------------------------~~---- 50 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEK-----LKLVTCYSRTEDKREKFGK-------------------------RY---- 50 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSS-----EEEEEEECSSHHHHHHHHH-------------------------HH----
T ss_pred cceEEEEccCHHHHHHHHHHHhCCC-----cEEEEEECCCHHHHHHHHH-------------------------Hc----
Confidence 4799999999999999998876412 6644 78998876543110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCchhHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~--~~aDlVIiaVp~~~~~~vl~~l 180 (303)
++...+|.++++ .+.|+|++++|+....+++.+.
T Consensus 51 -------------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 86 (354)
T 3db2_A 51 -------------------------NCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQC 86 (354)
T ss_dssp -------------------------TCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHH
T ss_pred -------------------------CCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHH
Confidence 122246788877 5699999999998776665543
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.4e-06 Score=78.65 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=65.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+... | .+|.+|+++++..+ .+
T Consensus 115 ~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~----------------------------~g----- 155 (380)
T 2o4c_A 115 AERTYGVVGAGQVGGRLVEVLRGL-G-----WKVLVCDPPRQARE----------------------------PD----- 155 (380)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHHS----------------------------TT-----
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCChhhhc----------------------------cC-----
Confidence 348999999999999999999887 8 89999998653110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-----HHHHH-HHHHHHhhccCCCCEEEE
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-----~~~vl-~~l~~~l~~~~~~~iivs 195 (303)
.. ..++++.+++||+|++++|... +..++ ++....+++ ++++|.
T Consensus 156 --------------------------~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (380)
T 2o4c_A 156 --------------------------GE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRP---GTWLVN 205 (380)
T ss_dssp --------------------------SC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCT---TEEEEE
T ss_pred --------------------------cc-cCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCC---CcEEEE
Confidence 00 1357788889999999998653 34444 334455676 788888
Q ss_pred eeccCcc
Q 022050 196 LAKGVEA 202 (303)
Q Consensus 196 ~~nGi~~ 202 (303)
+..|=..
T Consensus 206 ~sRG~vv 212 (380)
T 2o4c_A 206 ASRGAVV 212 (380)
T ss_dssp CSCGGGB
T ss_pred CCCCccc
Confidence 8777433
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=5.1e-05 Score=74.48 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=70.6
Q ss_pred ceEEEECCChHHHH--HHHHHHHhcCCCC-CCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 44 LRIVGVGAGAWGSV--FTAMLQDSYGYLR-DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 44 ~kI~VIGaG~mG~a--iA~~La~~~G~~~-~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
|||+|||+|+.|.+ +...++.. ..+. ...+|.|+|.++++++.... ..+. ..+..
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~-~~l~~~~~ei~L~Di~~~rl~~~~~-----~~~~-------------~~~~~--- 58 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQT-DELSREDTHIYLMDVHERRLNASYI-----LARK-------------YVEEL--- 58 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTC-TTTCSTTCEEEEECSCHHHHHHHHH-----HHHH-------------HHHHH---
T ss_pred CEEEEECCCchhhHHHHHHHHHhh-HhcCCCCCEEEEECCCHHHHHHHHH-----HHHH-------------HHHHc---
Confidence 79999999998755 33334443 2221 11479999999987653210 0110 00100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-----------------------c-------
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-----------------------S------- 170 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp-----------------------~------- 170 (303)
.. ...+..|+|.++|+++||+||+++= .
T Consensus 59 ----~~------------------~~~i~~t~d~~eAl~gAD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l 116 (477)
T 3u95_A 59 ----NS------------------PVKVVKTESLDEAIEGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGID 116 (477)
T ss_dssp ----TC------------------CCEEEEESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTT
T ss_pred ----CC------------------CeEEEEeCCHHHHhCCCCEEEECcccccccccccccccceeeeccCcccceeeccc
Confidence 00 0257789999999999999999861 1
Q ss_pred -h-------------------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 171 -T-------------------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 171 -~-------------------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
| .+.++++++..+++ ++.++..+|.+..
T Consensus 117 ~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P----~A~~in~tNP~~i 164 (477)
T 3u95_A 117 SQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAP----KAYLMQTANPVFE 164 (477)
T ss_dssp CBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCT----TCEEEECSSCHHH
T ss_pred ccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCC----CeEEEEecChHHH
Confidence 0 23567777777765 6899999988764
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.87 E-value=6.3e-05 Score=69.17 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~ 86 (303)
++||+|||+|.||.. ++..+.+..+ .+++ ++++++++.+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~-----~~lvav~d~~~~~~~ 45 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASD-----WTLQGAWSPTRAKAL 45 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSS-----EEEEEEECSSCTTHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHH
Confidence 489999999999996 8888865313 6665 8999987654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=69.18 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=70.7
Q ss_pred eeccCCchhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCC--eeEEEEecCCchhhhhhhhhHH
Q 022050 18 IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLF 94 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~--~~V~l~~r~~~~~~~~~~~~l~ 94 (303)
.||.-|+++.+- |.+ ......||+|+|| |.+|..++..|+.. ..+.++ .++.|+|.++.. +.+ +++.
T Consensus 5 ~~~~~~~~~~~~---~~~---~s~~~vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~-~~~--~Gva 74 (345)
T 4h7p_A 5 HHHHMGTLEAQT---QGP---GSMSAVKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPAL-KAL--AGVE 74 (345)
T ss_dssp -----------------------CCCEEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH-HHH--HHHH
T ss_pred cccccccccccc---cCC---CCCCCCEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCcc-ccc--hhhh
Confidence 355667776551 222 2223369999997 99999999999986 433211 378999987642 111 1110
Q ss_pred HHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch-
Q 022050 95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST- 171 (303)
Q Consensus 95 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~- 171 (303)
--+ .+. .++ ....+..+++..+++++||+||++- |.+
T Consensus 75 ~DL-----------------~~~-------~~~----------------~~~~~~~~~~~~~a~~~advVvi~aG~prkp 114 (345)
T 4h7p_A 75 AEL-----------------EDC-------AFP----------------LLDKVVVTADPRVAFDGVAIAIMCGAFPRKA 114 (345)
T ss_dssp HHH-----------------HHT-------TCT----------------TEEEEEEESCHHHHTTTCSEEEECCCCCCCT
T ss_pred hhh-----------------hhc-------Ccc----------------CCCcEEEcCChHHHhCCCCEEEECCCCCCCC
Confidence 001 110 000 0024667788889999999999964 321
Q ss_pred -------------hHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 172 -------------ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 172 -------------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.++++.+.|.++..+ +..|+..+|.+.
T Consensus 115 GmtR~DLl~~Na~I~~~~~~~i~~~a~~---~~~vlvvsNPvd 154 (345)
T 4h7p_A 115 GMERKDLLEMNARIFKEQGEAIAAVAAS---DCRVVVVGNPAN 154 (345)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHH
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHhhccC---ceEEEEeCCCcc
Confidence 355566666666655 677777777644
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-05 Score=63.99 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=62.0
Q ss_pred hHHHHHhccCCCCCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHH
Q 022050 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (303)
Q Consensus 30 ~~~~~~~~~~~~~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~ 105 (303)
+++++++ ..+.+|+|||+ |.+|..++..|.+. | ++ +|..++.+...
T Consensus 4 ~~l~~ll----~~p~~vaVvGas~~~g~~G~~~~~~l~~~-G-----~~--v~~vnp~~~~~------------------ 53 (140)
T 1iuk_A 4 QELRAYL----SQAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YR--VLPVNPRFQGE------------------ 53 (140)
T ss_dssp HHHHHHH----HHCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CE--EEEECGGGTTS------------------
T ss_pred HHHHHHH----cCCCEEEEECCCCCCCChHHHHHHHHHHC-C-----CE--EEEeCCCcccC------------------
Confidence 4566777 23578999999 89999999999988 8 65 67777652110
Q ss_pred HhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
... .+.+..+++++.+..|++++++|+....++++++...
T Consensus 54 -------~i~-------------------------------G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~~~ 93 (140)
T 1iuk_A 54 -------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL 93 (140)
T ss_dssp -------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH
T ss_pred -------cCC-------------------------------CEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHHHc
Confidence 011 2334455666556799999999999999999887653
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-05 Score=62.66 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|.|+|+|.+|..++..|.+. | ++|+++++++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~-g-----~~V~vid~~~ 36 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 6899999999999999999998 8 8999999984
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.7e-05 Score=69.16 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=53.9
Q ss_pred ceEEEECCChHHHHH-HHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~ai-A~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+||+|||+|.||..+ +..+.+. + .++ .++++++++.+++.+ ..
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~-~-----~~~vav~d~~~~~~~~~~~-------------------------~~---- 45 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT-G-----GEVVSMMSTSAERGAAYAT-------------------------EN---- 45 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT-T-----CEEEEEECSCHHHHHHHHH-------------------------HT----
T ss_pred CeEEEEcccHHHHHhhhHHhhcC-C-----CeEEEEECCCHHHHHHHHH-------------------------Hc----
Confidence 589999999999998 7777765 6 665 478998875542110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
++ .+.+|.++.++ ++|+|++++|+....+++.+.
T Consensus 46 -------------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 82 (332)
T 2glx_A 46 -------------------------GIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAA 82 (332)
T ss_dssp -------------------------TCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHH
T ss_pred -------------------------CCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHH
Confidence 01 13467777765 599999999998776666553
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=66.74 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=77.9
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEE-EecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|+| +|.||..++..+.+..+ .++.. +++++....- .....+.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~-----~eLv~~~d~~~~~~~G------------------------~d~gel~-- 55 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPD-----ATLVGALDRTGSPQLG------------------------QDAGAFL-- 55 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTT-----EEEEEEBCCTTCTTTT------------------------SBTTTTT--
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEEecCccccc------------------------ccHHHHh--
Confidence 58999999 79999999999887512 55543 5776432110 0000000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+ ...+.+++|+++.+.++|+||.++++....+.++... .. +..+|+.+.|+
T Consensus 56 ----g~------------------~~gv~v~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al---~~---G~~vVigTTG~ 107 (272)
T 4f3y_A 56 ----GK------------------QTGVALTDDIERVCAEADYLIDFTLPEGTLVHLDAAL---RH---DVKLVIGTTGF 107 (272)
T ss_dssp ----TC------------------CCSCBCBCCHHHHHHHCSEEEECSCHHHHHHHHHHHH---HH---TCEEEECCCCC
T ss_pred ----CC------------------CCCceecCCHHHHhcCCCEEEEcCCHHHHHHHHHHHH---Hc---CCCEEEECCCC
Confidence 00 0135567889888889999999999887766665543 33 56677777787
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e 239 (303)
+.+. .+.|.+... ...++..|||..-
T Consensus 108 s~~~---------~~~L~~aa~----~~~vv~a~N~s~G 133 (272)
T 4f3y_A 108 SEPQ---------KAQLRAAGE----KIALVFSANMSVG 133 (272)
T ss_dssp CHHH---------HHHHHHHTT----TSEEEECSCCCHH
T ss_pred CHHH---------HHHHHHHhc----cCCEEEECCCCHH
Confidence 6531 123444432 1346889998653
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=68.20 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=62.8
Q ss_pred CceEEEECCChHHH-HHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||. .++..|....+ .+|+ ++++++++.+++. ...
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a-------------------------~~~--- 73 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPL-----TEVTAIASRRWDRAKRFT-------------------------ERF--- 73 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTT-----EEEEEEEESSHHHHHHHH-------------------------HHH---
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCC-----eEEEEEEcCCHHHHHHHH-------------------------HHc---
Confidence 48999999999998 78888876513 6654 7899876554311 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
++...+|+++.++ +.|+|++|+|+....+++.+.. .. +..|+ +-|
T Consensus 74 --------------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~Vl-~EK 120 (350)
T 3rc1_A 74 --------------------------GGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRAL---RA---GKHVL-AEK 120 (350)
T ss_dssp --------------------------CSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHH---HT---TCEEE-EES
T ss_pred --------------------------CCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---HC---CCcEE-EeC
Confidence 2334478888775 5899999999998776666543 33 44433 555
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 121 P~a~ 124 (350)
T 3rc1_A 121 PLTT 124 (350)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 5544
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.8e-05 Score=69.35 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=56.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|||+|.||..++..|.+..+ .+ |.++++++++.++ +..
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~-----~~~v~v~d~~~~~~~~--------------------------~~~---- 53 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPG-----AALVRLASSNPDNLAL--------------------------VPP---- 53 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTT-----EEEEEEEESCHHHHTT--------------------------CCT----
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCC-----cEEEEEEeCCHHHHHH--------------------------HHh----
Confidence 45899999999999999999987513 55 4588998764431 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
.+...+|.+++++ ++|+|++++|+....+++.+.
T Consensus 54 --------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 89 (315)
T 3c1a_A 54 --------------------------GCVIESDWRSVVSAPEVEAVIIATPPATHAEITLAA 89 (315)
T ss_dssp --------------------------TCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHHH
T ss_pred --------------------------hCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHHH
Confidence 1334567777774 799999999998877766654
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.77 E-value=4.9e-05 Score=70.11 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=30.5
Q ss_pred CceEEEECCChHHH-HHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++||+|||+|.||. .++..|.+..+ .+++++++++++.+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~-----~~l~v~d~~~~~~~ 41 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPD-----IELVLCTRNPKVLG 41 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-----EEEEEECSCHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCC-----ceEEEEeCCHHHHH
Confidence 47999999999998 58888866413 67779999887654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=60.49 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=59.5
Q ss_pred HHHHHhccCCCCCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHH
Q 022050 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (303)
Q Consensus 31 ~~~~~~~~~~~~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~ 106 (303)
.|++++. .+.+|+|||+ |.+|..++..|.+. | ++ +|+.++.. +.
T Consensus 14 ~l~~ll~----~p~~iaVVGas~~~g~~G~~~~~~l~~~-G-----~~--v~~Vnp~~-~~------------------- 61 (144)
T 2d59_A 14 DIREILT----RYKKIALVGASPKPERDANIVMKYLLEH-G-----YD--VYPVNPKY-EE------------------- 61 (144)
T ss_dssp HHHHHHH----HCCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CE--EEEECTTC-SE-------------------
T ss_pred HHHHHHc----CCCEEEEEccCCCCCchHHHHHHHHHHC-C-----CE--EEEECCCC-Ce-------------------
Confidence 4556662 1468999999 79999999999988 8 66 56666642 10
Q ss_pred hhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHH
Q 022050 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
.. .+.+..++++..+..|+++++||+....++++++...
T Consensus 62 -------i~-------------------------------G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~~ 100 (144)
T 2d59_A 62 -------VL-------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK 100 (144)
T ss_dssp -------ET-------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred -------EC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHHc
Confidence 11 2333445666556799999999999999999887653
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00014 Score=66.80 Aligned_cols=141 Identities=15% Similarity=0.149 Sum_probs=77.4
Q ss_pred eccCCchhhhhhHHHHHhccCCCCCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHH
Q 022050 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEV 96 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~ 96 (303)
||.-|+||.. +.| . .++||+|+| +|.||..++..+.+..+ .++. ++++++....-
T Consensus 6 ~~~~~~~~~~-----~~m--~--~~irV~V~Ga~GrMGr~i~~~v~~~~~-----~eLvg~vd~~~~~~~G--------- 62 (288)
T 3ijp_A 6 HHHMGTLEAQ-----TQG--P--GSMRLTVVGANGRMGRELITAIQRRKD-----VELCAVLVRKGSSFVD--------- 62 (288)
T ss_dssp ------------------------CEEEEESSTTSHHHHHHHHHHHTCSS-----EEEEEEBCCTTCTTTT---------
T ss_pred ccccchhhhh-----hhc--c--CCeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc---------
Confidence 5667777643 122 1 458999999 89999999999886512 5543 45765432100
Q ss_pred HhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHH
Q 022050 97 INSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEV 176 (303)
Q Consensus 97 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~v 176 (303)
.. ...+.++ . ...+.+++|+++.+.++|+||-++++....+.
T Consensus 63 -~d-----------~gel~G~---------~-----------------~~gv~v~~dl~~ll~~aDVvIDFT~p~a~~~~ 104 (288)
T 3ijp_A 63 -KD-----------ASILIGS---------D-----------------FLGVRITDDPESAFSNTEGILDFSQPQASVLY 104 (288)
T ss_dssp -SB-----------GGGGTTC---------S-----------------CCSCBCBSCHHHHTTSCSEEEECSCHHHHHHH
T ss_pred -cc-----------hHHhhcc---------C-----------------cCCceeeCCHHHHhcCCCEEEEcCCHHHHHHH
Confidence 00 0001110 0 02466778999988899999999988766555
Q ss_pred HHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHH
Q 022050 177 FEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE 239 (303)
Q Consensus 177 l~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~e 239 (303)
++.. +.. +..+|+.+.|+..+. .+.|.+.... ..++..|||..-
T Consensus 105 ~~~~---l~~---Gv~vViGTTG~~~e~---------~~~L~~aa~~----~~~~~a~N~SiG 148 (288)
T 3ijp_A 105 ANYA---AQK---SLIHIIGTTGFSKTE---------EAQIADFAKY----TTIVKSGNMSLG 148 (288)
T ss_dssp HHHH---HHH---TCEEEECCCCCCHHH---------HHHHHHHHTT----SEEEECSCCCHH
T ss_pred HHHH---HHc---CCCEEEECCCCCHHH---------HHHHHHHhCc----CCEEEECCCcHH
Confidence 5443 333 566777777875431 1234444421 346889999653
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=67.80 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=69.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecC----CchhhhhhhhhHHHHHhhhhhHHHHhhhhcccc
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRP----GRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~----~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l 114 (303)
.+|||+|+|+ |.+|+.++..|+.. |.+. ...+|.++|++ +++++.. ..-+... ..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~-~~~~~~~~~ev~l~Di~~~~~~~~~~g~-----~~dl~~~------------~~ 65 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANG-DMLGKDQPVILQLLEIPNEKAQKALQGV-----MMEIDDC------------AF 65 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCSCHHHHHHHHHH-----HHHHHTT------------TC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCcCCCCCCEEEEEcCCCccccccchhh-----HHHHhhh------------cc
Confidence 4589999998 99999999999987 7321 01379999998 4333210 0001000 00
Q ss_pred hhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHH
Q 022050 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFE 178 (303)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~--------------~~~~~vl~ 178 (303)
+ + ...+..+++..+++++||+||++.. . ..+.++++
T Consensus 66 ~----------~------------------~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~ 117 (329)
T 1b8p_A 66 P----------L------------------LAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGK 117 (329)
T ss_dssp T----------T------------------EEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred c----------c------------------cCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0 0246677888899999999999762 1 12456666
Q ss_pred HHHHHhhccCCCCEEEEeeccC
Q 022050 179 EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 179 ~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+..+..+ ++.++..+|.+
T Consensus 118 ~i~~~~~p---~a~ii~~SNPv 136 (329)
T 1b8p_A 118 AIDAVASR---NIKVLVVGNPA 136 (329)
T ss_dssp HHHHHSCT---TCEEEECSSSH
T ss_pred HHHHhcCC---CeEEEEccCch
Confidence 66666423 56777777754
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.1e-05 Score=67.89 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=75.2
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
||+|||+|.||.+++..|++. | . +|++++|++++.+++. .
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~-G-----~~~I~v~nR~~~ka~~la-------------------------~-------- 150 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM-G-----VKDIWVVNRTIERAKALD-------------------------F-------- 150 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESCHHHHHTCC-------------------------S--------
T ss_pred eEEEECcHHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHHHHH-------------------------H--------
Confidence 899999999999999999998 8 5 8999999987654311 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHH--HHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKE--VFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~--vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
.+ ......++.++++++|+||.++|.....+ .+. ...+++ +++++++.-+
T Consensus 151 -~~--------------------~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~--~~~l~~---~~~V~Divy~-- 202 (253)
T 3u62_A 151 -PV--------------------KIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPVS--DDSLKN---LSLVYDVIYF-- 202 (253)
T ss_dssp -SC--------------------EEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSCC--HHHHTT---CSEEEECSSS--
T ss_pred -Hc--------------------ccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCCC--HHHhCc---CCEEEEeeCC--
Confidence 00 01122456667889999999998642211 111 123455 6888988877
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE 244 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~ 244 (303)
.. +++++...... + +..|++.--+.++.
T Consensus 203 ~T-----------~ll~~A~~~G~-~---~~~~Gl~MLv~Qa~ 230 (253)
T 3u62_A 203 DT-----------PLVVKARKLGV-K---HIIKGNLMFYYQAM 230 (253)
T ss_dssp CC-----------HHHHHHHHHTC-S---EEECTHHHHHHHHH
T ss_pred Cc-----------HHHHHHHHCCC-c---EEECCHHHHHHHHH
Confidence 22 33444331111 1 25677777777664
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00014 Score=70.30 Aligned_cols=120 Identities=27% Similarity=0.356 Sum_probs=82.7
Q ss_pred CchhhhhhHHH--HHhccCC-------CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhH
Q 022050 23 GSLEERLDELR--RLMGKAE-------GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93 (303)
Q Consensus 23 ~~~~~~~~~~~--~~~~~~~-------~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l 93 (303)
-++++.|.++. |.|...+ -.-+||+|||.|+-|.+=|.-|-.+ | .+|++--|.....+.-
T Consensus 8 l~~~~~~~~~~~c~~m~~~eF~~~~~~lkgK~IaVIGyGsQG~AqAlNLRDS-G-----v~V~Vglr~~s~~e~~----- 76 (491)
T 3ulk_A 8 LNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEAIAEKR----- 76 (491)
T ss_dssp SCHHHHHHHHTCCEECCGGGGTTTTGGGTTSEEEEESCSHHHHHHHHHHHHT-T-----CEEEEEECHHHHHTTC-----
T ss_pred ccHHHHHHHhccceeccHHHhcchhHHHcCCEEEEeCCChHhHHHHhHHHhc-C-----CcEEEEeCCCCccccc-----
Confidence 35688888886 3344332 1138999999999999999999999 9 8988877643211100
Q ss_pred HHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhH
Q 022050 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (303)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~ 173 (303)
.+ ..+.. .+ .+++. +..+|++.||+|++-+|...-
T Consensus 77 ----~S-------------~~~A~---------------~~------------Gf~v~-~~~eA~~~ADvV~~L~PD~~q 111 (491)
T 3ulk_A 77 ----AS-------------WRKAT---------------EN------------GFKVG-TYEELIPQADLVINLTPDKQH 111 (491)
T ss_dssp ----HH-------------HHHHH---------------HT------------TCEEE-EHHHHGGGCSEEEECSCGGGH
T ss_pred ----ch-------------HHHHH---------------HC------------CCEec-CHHHHHHhCCEEEEeCChhhH
Confidence 00 00000 11 23333 477899999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 174 KEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 174 ~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+++++|.|++++ ++.+ ..+-|+..
T Consensus 112 ~~vy~~I~p~lk~---G~~L-~faHGFnI 136 (491)
T 3ulk_A 112 SDVVRTVQPLMKD---GAAL-GYSHGFNI 136 (491)
T ss_dssp HHHHHHHGGGSCT---TCEE-EESSCHHH
T ss_pred HHHHHHHHhhCCC---CCEE-EecCcccc
Confidence 9999999999998 6654 46666643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00012 Score=69.67 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=62.3
Q ss_pred eccCCc-hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCC----CCCCeeE-EEEecCCchhhhhhhhh
Q 022050 19 HHTNGS-LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGY----LRDKVLI-RIWRRPGRSVDRATAEH 92 (303)
Q Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~----~~~~~~V-~l~~r~~~~~~~~~~~~ 92 (303)
||++|. |.+-+-.|.. | + .++||+|||+|.||...+..+.+. +. +.++.+| -++|+++++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~-M--s--~klrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~elvav~d~~~~~a~~~a~-- 77 (412)
T 4gqa_A 6 HHSSGVDLGTENLYFQS-M--S--ARLNIGLIGSGFMGQAHADAYRRA-AMFYPDLPKRPHLYALADQDQAMAERHAA-- 77 (412)
T ss_dssp ------------------------CEEEEEEECCSHHHHHHHHHHHHH-HHHCTTSSSEEEEEEEECSSHHHHHHHHH--
T ss_pred ccccccccccccCcccc-c--c--ccceEEEEcCcHHHHHHHHHHHhc-cccccccCCCeEEEEEEcCCHHHHHHHHH--
Confidence 678887 5555544433 2 2 348999999999999988888764 21 0111344 467888876543211
Q ss_pred HHHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCc
Q 022050 93 LFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPS 170 (303)
Q Consensus 93 l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~ 170 (303)
.+ ...++.+|.++.++ +.|+|++|+|+
T Consensus 78 -----------------------~~----------------------------~~~~~y~d~~~ll~~~~vD~V~I~tp~ 106 (412)
T 4gqa_A 78 -----------------------KL----------------------------GAEKAYGDWRELVNDPQVDVVDITSPN 106 (412)
T ss_dssp -----------------------HH----------------------------TCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred -----------------------Hc----------------------------CCCeEECCHHHHhcCCCCCEEEECCCc
Confidence 00 01245678888764 57999999999
Q ss_pred hhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 171 TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 171 ~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
..-.++..+... . +..| -+-|.+..
T Consensus 107 ~~H~~~~~~al~---a---GkhV-l~EKP~a~ 131 (412)
T 4gqa_A 107 HLHYTMAMAAIA---A---GKHV-YCEKPLAV 131 (412)
T ss_dssp GGHHHHHHHHHH---T---TCEE-EEESCSCS
T ss_pred HHHHHHHHHHHH---c---CCCe-EeecCCcC
Confidence 876665554332 2 3333 35565554
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=68.29 Aligned_cols=38 Identities=11% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|||+|+| +|.+|..++..|+.. |.. ++|.++|++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~-g~~---~ev~l~Di~~~ 45 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMN-PLV---SVLHLYDVVNA 45 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHC-TTE---EEEEEEESSSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEeCCCc
Confidence 458999999 799999999999886 521 57999998875
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=67.70 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=62.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||..++..+... +. .+.+ |-++++++++.+++.+ ..
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~a~-------------------------~~---- 49 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEFAQ-------------------------KH---- 49 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHHHH-------------------------HH----
T ss_pred ccEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHHHH-------------------------Hc----
Confidence 47999999999999999888754 30 0133 4578888776543110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
++ ++.+|.++.+. +.|+|++++|+....++..+.. .. +..|+ +-|
T Consensus 50 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~~---GkhVl-~EK 97 (334)
T 3ohs_X 50 -------------------------DIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCL---AA---GKAVL-CEK 97 (334)
T ss_dssp -------------------------TCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---HT---TCEEE-EES
T ss_pred -------------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---hc---CCEEE-EEC
Confidence 11 24578888775 6899999999997766665543 33 44433 556
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 98 P~a~ 101 (334)
T 3ohs_X 98 PMGV 101 (334)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 5544
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00029 Score=65.40 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=62.3
Q ss_pred CCceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.|+||+|||+|.||.. ++..+... . +.+|+ ++|+++++++++.+ .+
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~-~----~~~lvav~d~~~~~a~~~a~-------------------------~~-- 69 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDA-E----NCVVTAIASRDLTRAREMAD-------------------------RF-- 69 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHC-S----SEEEEEEECSSHHHHHHHHH-------------------------HH--
T ss_pred CccEEEEEcChHHHHHHHHHHHHhC-C----CeEEEEEECCCHHHHHHHHH-------------------------Hc--
Confidence 5789999999999975 45566554 2 15654 78898876543210 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.-.++.+|.++.++ +.|+|++|+|+..-.++..+... . +..| -+-
T Consensus 70 --------------------------g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~---a---GkhV-l~E 116 (350)
T 4had_A 70 --------------------------SVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD---A---GKHV-VCE 116 (350)
T ss_dssp --------------------------TCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH---T---TCEE-EEC
T ss_pred --------------------------CCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh---c---CCEE-EEe
Confidence 01235678888764 58999999999877666655433 2 3443 356
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
|.+..+
T Consensus 117 KPla~~ 122 (350)
T 4had_A 117 KPLALK 122 (350)
T ss_dssp SCCCSS
T ss_pred CCcccc
Confidence 666553
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=67.19 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=63.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|||+|.||..++..+... . +.++ .++++++++.+++. +. + +
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~-~----~~~lv~v~d~~~~~~~~~a---------~~------------~--~---- 52 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFA---------TA------------N--N---- 52 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHH---------HH------------T--T----
T ss_pred CceEEEEECchHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHH---------HH------------h--C----
Confidence 458999999999999999988774 2 1554 57888876543211 00 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
++ ....+.+|.++.+. ++|+|++++|+....+++.+. +.. +..|+ +-|
T Consensus 53 -----~~------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a---l~a---Gk~V~-~EK 102 (362)
T 1ydw_A 53 -----YP------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKA---AEK---GKHIL-LEK 102 (362)
T ss_dssp -----CC------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHH---HTT---TCEEE-ECS
T ss_pred -----CC------------------CCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHHH---HHC---CCeEE-Eec
Confidence 00 02345678888775 589999999999877666553 333 45454 355
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 103 P~a~ 106 (362)
T 1ydw_A 103 PVAM 106 (362)
T ss_dssp SCSS
T ss_pred CCcC
Confidence 4443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00019 Score=67.40 Aligned_cols=95 Identities=16% Similarity=0.062 Sum_probs=62.7
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||.. ++..+.+..+ .+++ ++++++++++++. .
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a-------------------------~----- 49 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQD-----IRIVAACDSDLERARRVH-------------------------R----- 49 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTT-----EEEEEEECSSHHHHGGGG-------------------------G-----
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCC-----cEEEEEEcCCHHHHHHHH-------------------------H-----
Confidence 479999999999985 8888876412 6665 8899887654311 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.+ ....+.+|.++.+. +.|+|++++|+....+++.+.. .. +..|+ +-|
T Consensus 50 ----~~-------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~EK 99 (359)
T 3m2t_A 50 ----FI-------------------SDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAM---SK---GVNVF-VEK 99 (359)
T ss_dssp ----TS-------------------CSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHH---HT---TCEEE-ECS
T ss_pred ----hc-------------------CCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---HC---CCeEE-EEC
Confidence 00 12345678888776 4599999999987766665543 33 44443 455
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 100 Pla~ 103 (359)
T 3m2t_A 100 PPCA 103 (359)
T ss_dssp CSCS
T ss_pred CCcC
Confidence 5544
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.1e-05 Score=69.96 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=62.8
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
....++|+|||+|.||...+..|....+ ..+|.+|+|+ +.+++. +.+... . +
T Consensus 118 ~~~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~--~a~~la-----~~l~~~-------------~-g--- 169 (313)
T 3hdj_A 118 RPRSSVLGLFGAGTQGAEHAAQLSARFA----LEAILVHDPY--ASPEIL-----ERIGRR-------------C-G--- 169 (313)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECTT--CCHHHH-----HHHHHH-------------H-T---
T ss_pred cCCCcEEEEECccHHHHHHHHHHHHhCC----CcEEEEECCc--HHHHHH-----HHHHHh-------------c-C---
Confidence 3456899999999999999999987412 1589999999 443321 111100 0 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
..+... ++++++++||+||.|+|+.. .++. ..++++ ++.|+.+
T Consensus 170 --------------------------~~~~~~-~~~eav~~aDIVi~aT~s~~--pvl~--~~~l~~---G~~V~~v 212 (313)
T 3hdj_A 170 --------------------------VPARMA-APADIAAQADIVVTATRSTT--PLFA--GQALRA---GAFVGAI 212 (313)
T ss_dssp --------------------------SCEEEC-CHHHHHHHCSEEEECCCCSS--CSSC--GGGCCT---TCEEEEC
T ss_pred --------------------------CeEEEe-CHHHHHhhCCEEEEccCCCC--cccC--HHHcCC---CcEEEEC
Confidence 024455 88999999999999999852 2222 345666 6766544
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=65.17 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=31.1
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEec--CCchh
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSV 85 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r--~~~~~ 85 (303)
|||+|+| +|.+|.+++..|+.. |.. .++.++|+ +++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~~~ 41 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPDKEDDT 41 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGGGHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEcCCCChhhH
Confidence 7999999 999999999999887 621 36999999 65443
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00023 Score=66.72 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=61.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||...+..+... . +.+++ ++++++++.+.. ..
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~a--------------------------~~----- 48 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAA-D----NLEVHGVFDILAEKREAA--------------------------AQ----- 48 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-T----TEEEEEEECSSHHHHHHH--------------------------HT-----
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHH--------------------------Hh-----
Confidence 47999999999999999888765 2 15654 678887643210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++.+.+|.++.+. +.|+|++|+|+....+++.+.. .. +..|+ +-|.
T Consensus 49 ------------------------~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---GkhVl-~EKP 97 (359)
T 3e18_A 49 ------------------------KGLKIYESYEAVLADEKVDAVLIATPNDSHKELAISAL---EA---GKHVV-CEKP 97 (359)
T ss_dssp ------------------------TTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-EESS
T ss_pred ------------------------cCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---HC---CCCEE-eeCC
Confidence 02334567888776 7899999999987766665443 33 44443 5555
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+..
T Consensus 98 ~a~ 100 (359)
T 3e18_A 98 VTM 100 (359)
T ss_dssp CCS
T ss_pred CcC
Confidence 544
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=66.35 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=46.2
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
.+|-+..+|-...--...|++. +...-..++++|+|+|.||.+++..|++. | . +|++|+|+++++++
T Consensus 113 ~~g~l~g~nTd~~G~~~~l~~~-~~~~l~~~~vlVlGaGg~g~aia~~L~~~-G-----~~~V~v~nR~~~ka~~ 180 (297)
T 2egg_A 113 NDGRLVGYNTDGLGYVQALEEE-MNITLDGKRILVIGAGGGARGIYFSLLST-A-----AERIDMANRTVEKAER 180 (297)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-TTCCCTTCEEEEECCSHHHHHHHHHHHTT-T-----CSEEEEECSSHHHHHH
T ss_pred cCCeEeeccCCHHHHHHHHHHh-CCCCCCCCEEEEECcHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHHH
Confidence 4565555554444444444432 10122347999999999999999999998 8 6 89999999876643
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00056 Score=63.46 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=29.7
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+|+| +|.+|.+++..|+.+.+ +. .++.++|+++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~-~~--~el~L~Di~~ 37 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLP-SG--SELSLYDIAP 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSC-TT--EEEEEECSST
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CC--ceEEEEecCC
Confidence 7999999 89999999999987411 11 5899999987
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00038 Score=65.38 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||+|.||.. .+..+....+ .+|+ +++++++++++ ..
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~----- 50 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPG-----LNLAFVASRDEEKVKR-------------------------DL----- 50 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTT-----EEEEEEECSCHHHHHH-------------------------HC-----
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHh-------------------------hC-----
Confidence 4589999999999996 5666655312 5654 77888754321 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
....+.+|.++.+. +.|+|++++|+....++..+. +.. +..|+ +-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~a---l~a---Gk~Vl-~E 97 (364)
T 3e82_A 51 --------------------------PDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLA---LNA---GKHVV-VD 97 (364)
T ss_dssp --------------------------TTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHHH---HHT---TCEEE-EC
T ss_pred --------------------------CCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHHH---HHC---CCcEE-Ee
Confidence 13456688888876 689999999998766665543 333 44444 45
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
|.+..
T Consensus 98 KPla~ 102 (364)
T 3e82_A 98 KPFTL 102 (364)
T ss_dssp SCSCS
T ss_pred CCCcC
Confidence 65544
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00021 Score=66.39 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=35.0
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...++|+|||+|.||..++..|+...+ ...|.+|+|++++.++
T Consensus 123 ~~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~~~~a~~ 165 (322)
T 1omo_A 123 KNSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (322)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHH
Confidence 456899999999999999999987312 1689999999887654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00027 Score=66.85 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=55.5
Q ss_pred CceEEEECCC-hHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG-~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+| .||..++..+... . +.++ -++++++++.+++.+ ..
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~a~-------------------------~~--- 48 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-P----DAQIVAACDPNEDVRERFGK-------------------------EY--- 48 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-T----TEEEEEEECSCHHHHHHHHH-------------------------HH---
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-C----CeEEEEEEeCCHHHHHHHHH-------------------------Hc---
Confidence 4899999999 9999999988775 3 1554 478888765543110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
++...+|.++.++ +.|+|++++|+....+++.+.
T Consensus 49 --------------------------g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~a 84 (387)
T 3moi_A 49 --------------------------GIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQA 84 (387)
T ss_dssp --------------------------TCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHHH
T ss_pred --------------------------CCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 2335678888765 599999999998766665543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=62.84 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=67.2
Q ss_pred CCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHH--HHhcCCCCCCee-EEEEecCCc-hhhhhhhhhHHHHH
Q 022050 22 NGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAML--QDSYGYLRDKVL-IRIWRRPGR-SVDRATAEHLFEVI 97 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~L--a~~~G~~~~~~~-V~l~~r~~~-~~~~~~~~~l~~~i 97 (303)
.|..++=.++++..++... ..+++|+|||++|.+++..+ ... | ++ |-++|.+++ +...
T Consensus 65 GY~V~~L~~~i~~~Lg~~~--~~~V~IvGaG~lG~aLa~~~~~~~~-g-----~~iVg~~D~dp~~kiG~---------- 126 (212)
T 3keo_A 65 GYDVKKLMNFFAEILNDHS--TTNVMLVGCGNIGRALLHYRFHDRN-K-----MQISMAFDLDSNDLVGK---------- 126 (212)
T ss_dssp SEEHHHHHHHHHHHTTTTS--CEEEEEECCSHHHHHHTTCCCCTTS-S-----EEEEEEEECTTSTTTTC----------
T ss_pred CEEHHHHHHHHHHHhCCCC--CCEEEEECcCHHHHHHHHhhhcccC-C-----eEEEEEEeCCchhccCc----------
Confidence 3455666677777777554 36899999999999999874 223 4 55 446788876 4320
Q ss_pred hhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHH
Q 022050 98 NSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKE 175 (303)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~ 175 (303)
....++ ++...+++++.++ +.|.+|+|+|+...++
T Consensus 127 --------------~~i~Gv-----------------------------pV~~~~dL~~~v~~~~Id~vIIAvPs~~aq~ 163 (212)
T 3keo_A 127 --------------TTEDGI-----------------------------PVYGISTINDHLIDSDIETAILTVPSTEAQE 163 (212)
T ss_dssp --------------BCTTCC-----------------------------BEEEGGGHHHHC-CCSCCEEEECSCGGGHHH
T ss_pred --------------eeECCe-----------------------------EEeCHHHHHHHHHHcCCCEEEEecCchhHHH
Confidence 011111 2333456666655 5899999999998888
Q ss_pred HHHHHHHH
Q 022050 176 VFEEISRY 183 (303)
Q Consensus 176 vl~~l~~~ 183 (303)
+.+.+...
T Consensus 164 v~d~lv~~ 171 (212)
T 3keo_A 164 VADILVKA 171 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88887653
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=62.58 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhH
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDV 103 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~ 103 (303)
.++-++++++.++... .+||+|||+|.+|.+++..+....| .+ |-++|.++++...
T Consensus 64 v~~L~~~~~~~lg~~~--~~rV~IIGaG~~G~~la~~~~~~~g-----~~iVg~~D~dp~k~g~---------------- 120 (211)
T 2dt5_A 64 VPVLKRELRHILGLNR--KWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVGR---------------- 120 (211)
T ss_dssp HHHHHHHHHHHHTTTS--CEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTTC----------------
T ss_pred hHHHHHHHHHHhCcCC--CCEEEEECccHHHHHHHHhHhhcCC-----cEEEEEEeCCHHHHhh----------------
Confidence 3344555566666543 4799999999999999986322103 55 4567888764321
Q ss_pred HHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCchhHHHHHHHHHH
Q 022050 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR 182 (303)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~-~aDlVIiaVp~~~~~~vl~~l~~ 182 (303)
...++ ++...+++++.++ +.|.|++|+|+....++.+.+..
T Consensus 121 ---------~i~gv-----------------------------~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l~~ 162 (211)
T 2dt5_A 121 ---------PVRGG-----------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVA 162 (211)
T ss_dssp ---------EETTE-----------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred ---------hhcCC-----------------------------eeecHHhHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Confidence 11111 2333567777654 58999999999988777777654
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00033 Score=67.54 Aligned_cols=106 Identities=17% Similarity=0.189 Sum_probs=65.6
Q ss_pred CceEEEECCChH-HHHHHHHHHH--hcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 43 PLRIVGVGAGAW-GSVFTAMLQD--SYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 43 ~~kI~VIGaG~m-G~aiA~~La~--~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
+|||+|||+|.. +..+...|+. . + +.. .+|.|+|.++++++... .+ ... +..
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~-~-l~~-~el~L~Di~~~~~~~~~--~~----~~~-------------~~~--- 56 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISE-D-VRI-DEVIFYDIDEEKQKIVV--DF----VKR-------------LVK--- 56 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTT-T-SCC-CEEEEECSCHHHHHHHH--HH----HHH-------------HHT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHhccc-C-CCc-CEEEEEeCCHHHHHHHH--HH----HHH-------------Hhh---
Confidence 589999999984 2222234455 3 3 211 58999999998765311 10 000 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------------------
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST---------------------------- 171 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~---------------------------- 171 (303)
. . .++..++|..+++++||+||++.-..
T Consensus 57 ---~--------------------~-~~v~~t~d~~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi 112 (417)
T 1up7_A 57 ---D--------------------R-FKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGF 112 (417)
T ss_dssp ---T--------------------S-SEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHH
T ss_pred ---C--------------------C-eEEEEeCCHHHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchh
Confidence 0 0 14667788888899999999998221
Q ss_pred --------hHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 172 --------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 172 --------~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.++++++.++. + ++++..+|.+..
T Consensus 113 ~~~~rni~i~~~i~~~i~~~~-~----A~lin~TNPvdi 146 (417)
T 1up7_A 113 SAALRAFPIVEEYVDTVRKTS-N----ATIVNFTNPSGH 146 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-C----CEEEECSSSHHH
T ss_pred HHhhccHHHHHHHHHHHHHHC-C----EEEEEeCChHHH
Confidence 1445666666665 4 788989988654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=69.85 Aligned_cols=52 Identities=17% Similarity=0.118 Sum_probs=39.0
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+.-++.+++-.+..- .-++|+|+|.|.+|..+|..+... | .+|+++++++..
T Consensus 195 ~slldgi~ratg~~L-~GktVgIiG~G~IG~~vA~~Lka~-G-----a~Viv~D~~p~~ 246 (436)
T 3h9u_A 195 ESLVDGIKRATDVMI-AGKTACVCGYGDVGKGCAAALRGF-G-----ARVVVTEVDPIN 246 (436)
T ss_dssp HHHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHH
T ss_pred HHHHHHHHHhcCCcc-cCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCChhh
Confidence 344555555443322 238999999999999999999887 8 899999998753
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00024 Score=68.39 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=35.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|+|+|.+|..++..|... | ++|++++++++.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g-----~~vvvId~d~~~v~~ 42 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-G-----VKMVVLDHDPDHIET 42 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 47899999999999999999998 8 899999999987764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00035 Score=65.00 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=59.5
Q ss_pred CceEEEECCChHHHHH-HH-HHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 43 PLRIVGVGAGAWGSVF-TA-MLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 43 ~~kI~VIGaG~mG~ai-A~-~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
++||+|||+|.||..+ +. .+....+ .+++ ++++++++.+. ....
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~-----~~l~av~d~~~~~~~~--------------------------~~~~-- 48 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDS-----WHVAHIFRRHAKPEEQ--------------------------APIY-- 48 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTT-----EEEEEEECSSCCGGGG--------------------------SGGG--
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCC-----eEEEEEEcCCHhHHHH--------------------------HHhc--
Confidence 4799999999999864 44 2233213 6665 88998765421 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
..+.+.+|+++.+.+ .|+|++++|+....++..+.. .. +..|+ +-
T Consensus 49 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~Vl-~E 95 (345)
T 3f4l_A 49 --------------------------SHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL---EA---GKNVL-VE 95 (345)
T ss_dssp --------------------------TTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHHHH---HT---TCEEE-EC
T ss_pred --------------------------CCCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---Hc---CCcEE-Ee
Confidence 135567888887765 899999999987666655433 33 44444 44
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
|.+..
T Consensus 96 KP~a~ 100 (345)
T 3f4l_A 96 KPFTP 100 (345)
T ss_dssp SSSCS
T ss_pred CCCCC
Confidence 65544
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00048 Score=63.64 Aligned_cols=79 Identities=10% Similarity=0.177 Sum_probs=54.4
Q ss_pred CceEEEECCChHHH-HHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.+|. .++..+... + .++ -++++++++.+++.++ +.
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~-~-----~~lvav~d~~~~~~~~~a~~----------------------~~----- 50 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDA-G-----AELAGVFESDSDNRAKFTSL----------------------FP----- 50 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHT-T-----CEEEEEECSCTTSCHHHHHH----------------------ST-----
T ss_pred ccEEEEECCChHHHHHhhhhhcCC-C-----cEEEEEeCCCHHHHHHHHHh----------------------cC-----
Confidence 48999999999996 577777655 5 664 6899998766532100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
...+.+|.++.++ +.|+|++++|+....++..+.
T Consensus 51 --------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~a 86 (336)
T 2p2s_A 51 --------------------------SVPFAASAEQLITDASIDLIACAVIPCDRAELALRT 86 (336)
T ss_dssp --------------------------TCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHH
T ss_pred --------------------------CCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHH
Confidence 1224567877765 689999999998766655543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00097 Score=59.58 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||+|+|+|.+|+.+|..|+.. |. .+++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~-Gv----~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc-CC----CeEEEEcCCC
Confidence 6899999999999999999999 82 3899999987
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00037 Score=64.10 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=27.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~ 85 (303)
++||+|||+|.||..++..+.+..+ .++. +++++++++
T Consensus 9 ~irv~IIG~G~iG~~~~~~l~~~~~-----~elvav~d~~~~~~ 47 (304)
T 3bio_A 9 KIRAAIVGYGNIGRYALQALREAPD-----FEIAGIVRRNPAEV 47 (304)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECC-----
T ss_pred CCEEEEECChHHHHHHHHHHhcCCC-----CEEEEEEcCCHHHH
Confidence 4899999999999999999887413 6766 788887643
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00041 Score=65.12 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=60.9
Q ss_pred CceEEEECCChHHH-HHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.+|. .++..+... + .+ |-++++++++++++.+ .
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~-~-----~~lvav~d~~~~~a~~~a~-------------------------~---- 70 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRA-G-----ARLAGFHEKDDALAAEFSA-------------------------V---- 70 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHT-T-----CEEEEEECSCHHHHHHHHH-------------------------H----
T ss_pred CcEEEEECcCHHHHHHHHHHhhcC-C-----cEEEEEEcCCHHHHHHHHH-------------------------H----
Confidence 47999999999984 566666655 5 56 4578998876543110 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
+ ....+.+|.++.+.+ .|+|++++|+....++..... .. +..|+ +-|
T Consensus 71 -----~-------------------~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al---~a---GkhVl-~EK 119 (361)
T 3u3x_A 71 -----Y-------------------ADARRIATAEEILEDENIGLIVSAAVSSERAELAIRAM---QH---GKDVL-VDK 119 (361)
T ss_dssp -----S-------------------SSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHHHH---HT---TCEEE-EES
T ss_pred -----c-------------------CCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCeEE-EeC
Confidence 0 013456788887764 899999999987766655443 32 44433 556
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 120 Pla~ 123 (361)
T 3u3x_A 120 PGMT 123 (361)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 5554
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00029 Score=67.94 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=55.4
Q ss_pred CCceEEEECCChHHH-HHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||+|.||. .++..+... + +.++ .++++++++.+++.++ + ..+.
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~a~~---------------~-----g~~~--- 133 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAAE---------------Y-----GVDP--- 133 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHHH---------------T-----TCCG---
T ss_pred CceEEEEECCcHHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHHHH---------------h-----CCCc---
Confidence 357999999999997 888888764 2 1554 5789887755431100 0 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
..+.+.+|.++.++ +.|+|++++|+....+++...
T Consensus 134 --------------------------~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~a 170 (433)
T 1h6d_A 134 --------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRA 170 (433)
T ss_dssp --------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHH
T ss_pred --------------------------ccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHH
Confidence 01334466777665 689999999998776666554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00018 Score=70.21 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..|||.|+|+|.+|..+|..|... | |+|++++++++.+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~-~-----~~v~vId~d~~~~~~ 41 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGE-N-----NDITIVDKDGDRLRE 41 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCST-T-----EEEEEEESCHHHHHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 359999999999999999999988 8 999999999987764
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00089 Score=61.27 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+.+||+|+|+ |.||...+..+.+. | .+ .++..++..... ..
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~-g-----~~-~V~~V~p~~~g~-------------------------~~------ 47 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAY-G-----TK-MVGGVTPGKGGT-------------------------TH------ 47 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE------
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-C-----Ce-EEEEeCCCcccc-------------------------ee------
Confidence 4589999999 99999999999887 7 66 345555532100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
..+.+..+++++.+ ++|++++++|+....+++++.... . -..++..+.
T Consensus 48 -------------------------~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~-G----i~~iVi~t~ 97 (288)
T 2nu8_A 48 -------------------------LGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDA-G----IKLIITITE 97 (288)
T ss_dssp -------------------------TTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHT-T----CSEEEECCC
T ss_pred -------------------------CCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 13556677888776 899999999999998888886653 1 234566777
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|+..+
T Consensus 98 G~~~~ 102 (288)
T 2nu8_A 98 GIPTL 102 (288)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 87653
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0005 Score=62.53 Aligned_cols=127 Identities=18% Similarity=0.134 Sum_probs=73.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|+|+ |.||..++..+....| ++++ +++++++.... + ....+.+.
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~-----~elva~~d~~~~~~~g---~------------------d~~~~~g~--- 55 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEG-----VQLGAALEREGSSLLG---S------------------DAGELAGA--- 55 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTT-----EECCCEECCTTCTTCS---C------------------CTTCSSSS---
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCchhhhh---h------------------hHHHHcCC---
Confidence 489999999 9999999998875424 7766 67776643210 0 00000000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. ...+.+++|+++++.++|+||.++++....+.+.... .. +..+|+-+.|+
T Consensus 56 ------~-----------------~~~v~~~~dl~~~l~~~DvVIDft~p~~~~~~~~~a~---~~---G~~vVigTtG~ 106 (273)
T 1dih_A 56 ------G-----------------KTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCR---QH---GKGMVIGTTGF 106 (273)
T ss_dssp ------S-----------------CCSCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECCCCC
T ss_pred ------C-----------------cCCceecCCHHHHhcCCCEEEEcCChHHHHHHHHHHH---hC---CCCEEEECCCC
Confidence 0 0134566788777788999997777665555554433 33 55566655576
Q ss_pred ccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHH
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI 240 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev 240 (303)
..+. .+.+.+.-.. ..++..||+...+
T Consensus 107 ~~e~---------~~~L~~~a~~----~~vv~a~N~siGv 133 (273)
T 1dih_A 107 DEAG---------KQAIRDAAAD----IAIVFAANFSVGV 133 (273)
T ss_dssp CHHH---------HHHHHHHTTT----SCEEECSCCCHHH
T ss_pred CHHH---------HHHHHHhcCC----CCEEEEecCcHHH
Confidence 6531 1234443221 2366788876543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00056 Score=67.34 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
-++|+|+|+|.||..+|..+... | .+|+++++++.++
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~-G-----a~Viv~d~~~~~~ 310 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQ-G-----ARVSVTEIDPINA 310 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred cCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 48999999999999999999887 8 8999999998654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00018 Score=68.56 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=34.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..||+|||+|.+|...|..+... | .+|+++|+++++++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~ 222 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRL-G-----AKTTGYDVRPEVAEQ 222 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSGGGHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999999999887 8 799999999987654
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00045 Score=63.96 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (303)
++||+|||+|+||..++..+.++ + +.+ |.+++++++
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~-~----~~elvav~d~~~~ 39 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRAT 39 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSC
T ss_pred CCEEEEEeecHHHHHHHHHHhcC-C----CCEEEEEEcCCHH
Confidence 47999999999999999998765 3 145 457888764
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=61.67 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCceEEEECCC-hHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG-~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||+| .||...+..+... + ++.++ -++++++++++++.+ ..
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~-~---~~~~lvav~d~~~~~~~~~a~-------------------------~~-- 65 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAK-------------------------MV-- 65 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHH-------------------------HH--
T ss_pred CceeEEEEecCHHHHHHHHHHHHhC-C---CceEEEEEEcCCHHHHHHHHH-------------------------Hh--
Confidence 45899999999 8999999888764 2 11554 578988876543110 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
....+.+|.++.+. +.|+|++++|+....++..+.. .. +..|+ +-
T Consensus 66 --------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~E 112 (340)
T 1zh8_A 66 --------------------------GNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKAL---RK---GVHVI-CE 112 (340)
T ss_dssp --------------------------SSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHH---HT---TCEEE-EE
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHH---HC---CCcEE-Ee
Confidence 01245678888765 5899999999987666655433 33 44443 35
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
|.+..
T Consensus 113 KPla~ 117 (340)
T 1zh8_A 113 KPIST 117 (340)
T ss_dssp SSSSS
T ss_pred CCCCC
Confidence 65544
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0025 Score=60.52 Aligned_cols=115 Identities=12% Similarity=0.025 Sum_probs=68.2
Q ss_pred CCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.++||+|+| +|.+|.++|..++.. +.+.....+.|++.+.+..+... ++. .+. +.+.
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~-~l~~e~~~l~L~d~d~~~~~~~~-~G~--amD---------------L~h~--- 88 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQAL-EGV--AME---------------LEDS--- 88 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHHHH-HHH--HHH---------------HHTT---
T ss_pred CCCEEEEECCCChHHHHHHHHHHcC-CcCCCCceeEEEecCccchhhhh-HHH--HHh---------------HHhh---
Confidence 458999999 799999999999988 75432234888776654322100 110 000 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch--------------hHHHHHHHHHHHh
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYW 184 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~--------------~~~~vl~~l~~~l 184 (303)
.++ .+.++.++++..+++++||+||++- |.+ .++++.+.|..+.
T Consensus 89 ----~~p----------------~~~~v~i~~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a 148 (375)
T 7mdh_A 89 ----LYP----------------LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148 (375)
T ss_dssp ----TCT----------------TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----hhh----------------hcCCcEEecCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 0024566777778899999999964 321 2444555555553
Q ss_pred hccCCCCEEEEeeccCc
Q 022050 185 KERITVPVIISLAKGVE 201 (303)
Q Consensus 185 ~~~~~~~iivs~~nGi~ 201 (303)
.+ +.+++..+|.+.
T Consensus 149 ~p---~~ivlVvsNPvD 162 (375)
T 7mdh_A 149 SK---NVKVLVVGNPCN 162 (375)
T ss_dssp CT---TCEEEECSSSHH
T ss_pred CC---CeEEEEecCchh
Confidence 44 678888887643
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00094 Score=62.51 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=60.3
Q ss_pred CCceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||+|.||.. .+..+....+ .+|+ +++++++++.+ ..
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~----- 48 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPH-----FELYKIVERSKELSKE-------------------------RY----- 48 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTT-----EEEEEEECSSCCGGGT-------------------------TC-----
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHH-------------------------hC-----
Confidence 3589999999999997 5666655413 5654 78888764311 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
....+.+|.++.+.+ .|+|++|+|+....++..+.. .. +..|+ +-
T Consensus 49 --------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~E 95 (362)
T 3fhl_A 49 --------------------------PQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGMAL---EA---GKNVV-VE 95 (362)
T ss_dssp --------------------------TTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-EE
T ss_pred --------------------------CCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCeEE-Ee
Confidence 124566788887765 899999999987666655433 33 44443 45
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
|.+..
T Consensus 96 KP~a~ 100 (362)
T 3fhl_A 96 KPFTS 100 (362)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 55544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00036 Score=68.65 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=63.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.||..+|..+..- | .+|++|++++..... . ..
T Consensus 276 ~GktVgIIG~G~IG~~vA~~l~~~-G-----~~V~v~d~~~~~~~~-----------a--------------~~------ 318 (494)
T 3d64_A 276 AGKIAVVAGYGDVGKGCAQSLRGL-G-----ATVWVTEIDPICALQ-----------A--------------AM------ 318 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSCHHHHHH-----------H--------------HT------
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCChHhHHH-----------H--------------HH------
Confidence 448999999999999999999877 8 899999998753210 0 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
....+ .+++++++++|+|++++....+ +-++....+++ +++|+.+..|
T Consensus 319 ------------------------~G~~~-~~l~ell~~aDiVi~~~~t~~l--I~~~~l~~MK~---gAilINvgrg 366 (494)
T 3d64_A 319 ------------------------EGYRV-VTMEYAADKADIFVTATGNYHV--INHDHMKAMRH---NAIVCNIGHF 366 (494)
T ss_dssp ------------------------TTCEE-CCHHHHTTTCSEEEECSSSSCS--BCHHHHHHCCT---TEEEEECSSS
T ss_pred ------------------------cCCEe-CCHHHHHhcCCEEEECCCcccc--cCHHHHhhCCC---CcEEEEcCCC
Confidence 01222 3688889999999999854321 01223334666 7888877776
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0011 Score=61.84 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||.. .+..+....+ .+|+ +++++++++++ ..
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~-----~~l~av~d~~~~~~~~-------------------------~~------ 50 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPG-----LELAGVSSSDASKVHA-------------------------DW------ 50 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTT-----EEEEEEECSCHHHHHT-------------------------TC------
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCC-----cEEEEEECCCHHHHHh-------------------------hC------
Confidence 479999999999997 6666665412 5654 77888754321 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHH
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l 180 (303)
....+.+|.++.+.+ .|+|++++|+....++..+.
T Consensus 51 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~a 87 (352)
T 3kux_A 51 -------------------------PAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSA 87 (352)
T ss_dssp -------------------------SSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHHH
T ss_pred -------------------------CCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHH
Confidence 124456788887754 89999999998766655543
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00042 Score=67.96 Aligned_cols=92 Identities=17% Similarity=0.050 Sum_probs=63.4
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..-++|+|||.|.||..+|..+... | .+|++|++++...... ..
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~-G-----~~Viv~d~~~~~~~~a-------------------------~~----- 298 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDPICAIQA-------------------------VM----- 298 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHHH-------------------------HT-----
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-c-----CEEEEEeCChhhHHHH-------------------------HH-----
Confidence 3458999999999999999999887 8 8999999987532110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
..+.+ .++++++++||+|++++....+- -++....+++ +++|+.+..|
T Consensus 299 -------------------------~g~~~-~~l~ell~~aDiVi~~~~t~~lI--~~~~l~~MK~---gailiNvgrg 346 (479)
T 1v8b_A 299 -------------------------EGFNV-VTLDEIVDKGDFFITCTGNVDVI--KLEHLLKMKN---NAVVGNIGHF 346 (479)
T ss_dssp -------------------------TTCEE-CCHHHHTTTCSEEEECCSSSSSB--CHHHHTTCCT---TCEEEECSST
T ss_pred -------------------------cCCEe-cCHHHHHhcCCEEEECCChhhhc--CHHHHhhcCC---CcEEEEeCCC
Confidence 01222 46888899999999997443321 1122233666 7888877766
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00033 Score=61.33 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=32.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|.|+|+|.+|..++..|.+. | + |++++++++.++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~-g-----~-v~vid~~~~~~~ 45 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 45 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS-E-----E-EEEESCGGGHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----e-EEEEECCHHHHH
Confidence 47899999999999999999888 7 8 999999987654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00033 Score=65.58 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=65.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++++|||.|.+|..+|..+..- | .+|..|++...... ..
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~----------------------------~~------ 180 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAF-G-----MKVLCYDVVKREDL----------------------------KE------ 180 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH----------------------------HH------
T ss_pred CcEEEEECcchHHHHHHHhhccc-C-----ceeeecCCccchhh----------------------------hh------
Confidence 37899999999999999998876 7 89999998753210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
..... .++++.++.||+|++.+|-.. ++.++ ++....+++ ++++|.+..|=
T Consensus 181 -----------------------~~~~~-~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~ 233 (334)
T 3kb6_A 181 -----------------------KGCVY-TSLDELLKESDVISLHVPYTKETHHMINEERISLMKD---GVYLINTARGK 233 (334)
T ss_dssp -----------------------TTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred -----------------------cCcee-cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCC---CeEEEecCccc
Confidence 01222 467888999999999998752 33322 222233666 78889888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 234 iVd 236 (334)
T 3kb6_A 234 VVD 236 (334)
T ss_dssp GBC
T ss_pred ccc
Confidence 444
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=65.23 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (303)
.+++.|+|+|.||.+++..|++. | . +|++++|++++.+
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~ 155 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKI-V-----RPTLTVANRTMSRFN 155 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTT-C-----CSCCEEECSCGGGGT
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence 37899999999999999999998 8 6 8999999987654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00074 Score=64.66 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=29.3
Q ss_pred CceEEEECCCh---HHHHHHHHHHHhcCCCCCCeeEE--EEecCCchhhh
Q 022050 43 PLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~---mG~aiA~~La~~~G~~~~~~~V~--l~~r~~~~~~~ 87 (303)
++||+|||+|. ||...+..+... + ..+++ ++++++++.++
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~ 81 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLD-D----HYELVAGALSSTPEKAEA 81 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHT-S----CEEEEEEECCSSHHHHHH
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhC-C----CcEEEEEEeCCCHHHHHH
Confidence 47999999999 999988887765 4 15654 67888876543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=62.08 Aligned_cols=92 Identities=23% Similarity=0.206 Sum_probs=59.1
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||.. .+..+....+ .+| -+++++++++.+ ..
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~------ 48 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDE-----YQISKIMTSRTEEVKR-------------------------DF------ 48 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTT-----EEEEEEECSCHHHHHH-------------------------HC------
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHh-------------------------hC------
Confidence 489999999999996 5666654312 565 467887653210 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
+...+.+|.++.+. +.|+|++++|+....++..... .. +..|+ +-|
T Consensus 49 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~EK 96 (358)
T 3gdo_A 49 -------------------------PDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACI---QA---GKHVV-MEK 96 (358)
T ss_dssp -------------------------TTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHHHH---HT---TCEEE-EES
T ss_pred -------------------------CCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH---Hc---CCeEE-Eec
Confidence 12456678888776 6899999999987666655433 33 44444 456
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 97 Pla~ 100 (358)
T 3gdo_A 97 PMTA 100 (358)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 5544
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=63.15 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=38.6
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.-++.++|..+..- .-++++|+|.|.+|..+|..+..- | .+|+++++++.
T Consensus 232 slvdgI~Ratg~~L-~GKTVgVIG~G~IGr~vA~~lraf-G-----a~Viv~d~dp~ 281 (464)
T 3n58_A 232 SLVDGIRRGTDVMM-AGKVAVVCGYGDVGKGSAQSLAGA-G-----ARVKVTEVDPI 281 (464)
T ss_dssp HHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHH
T ss_pred HHHHHHHHhcCCcc-cCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 33455666554333 338999999999999999999877 8 89999999874
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0025 Score=58.31 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=67.1
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+.+||+|+|+ |.||..++..+.+. | ++ .++..++.... ...
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i------ 47 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTY-G-----TK-IVAGVTPGKGG-------------------------MEV------ 47 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHc-C-----Ce-EEEEECCCCCC-------------------------ceE------
Confidence 4589999999 99999999999887 8 66 34555553210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
..+.+..+++++.+ ++|++++++|+....+++++.... . -..++..+.
T Consensus 48 -------------------------~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~-G----i~~vVi~t~ 97 (288)
T 1oi7_A 48 -------------------------LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHA-G----IPLIVLITE 97 (288)
T ss_dssp -------------------------TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred -------------------------CCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 13556677888777 899999999999999988886652 1 133666788
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|+...
T Consensus 98 G~~~~ 102 (288)
T 1oi7_A 98 GIPTL 102 (288)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 88653
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00087 Score=63.61 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.4
Q ss_pred CceEEEECCCh---HHHHHHHHHHHhcCCCCCCeeEE--EEecCCchhhh
Q 022050 43 PLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~---mG~aiA~~La~~~G~~~~~~~V~--l~~r~~~~~~~ 87 (303)
++||+|||+|. ||...+..+... + ..+++ ++++++++.++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~ 56 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRD-N----TFVLVAGAFDIDPIRGSA 56 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGG-G----SEEEEEEECCSSHHHHHH
T ss_pred cceEEEEcCCccchhHHHHHHHHhhC-C----CeEEEEEEeCCCHHHHHH
Confidence 47999999999 999998888766 4 15665 56888876543
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.003 Score=58.06 Aligned_cols=94 Identities=11% Similarity=-0.012 Sum_probs=62.6
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.|+||+|||+ |.||...+..+... + .+ |.++|++++.... . + ..
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~-----~~lvav~d~~~~~~~~-~---------~-------------~~----- 47 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV-G-----GVLVASLDPATNVGLV-D---------S-------------FF----- 47 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT-T-----CEEEEEECSSCCCGGG-G---------G-------------TC-----
T ss_pred CceEEEEECCChHHHHHHHHHHHhC-C-----CEEEEEEcCCHHHHHH-H---------h-------------hC-----
Confidence 4789999999 78999999999887 6 44 5678888764210 0 0 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh----------cCCCEEEEecCchhHHHHHHHHHHHhhccCC
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV----------WDADIVINGLPSTETKEVFEEISRYWKERIT 189 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~----------~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~ 189 (303)
+..++.+|.++.+ .+.|+|++++|+....++..+... .
T Consensus 48 --------------------------~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~---a--- 95 (312)
T 3o9z_A 48 --------------------------PEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALR---L--- 95 (312)
T ss_dssp --------------------------TTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHH---T---
T ss_pred --------------------------CCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHH---C---
Confidence 1345566777655 578999999999877666655433 2
Q ss_pred CCEEEEeeccCcc
Q 022050 190 VPVIISLAKGVEA 202 (303)
Q Consensus 190 ~~iivs~~nGi~~ 202 (303)
+..|+ +-|.+..
T Consensus 96 GkhVl-~EKPla~ 107 (312)
T 3o9z_A 96 GANAL-SEKPLVL 107 (312)
T ss_dssp TCEEE-ECSSSCS
T ss_pred CCeEE-EECCCCC
Confidence 44443 5565554
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0024 Score=61.53 Aligned_cols=84 Identities=21% Similarity=0.123 Sum_probs=55.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|||+|.||...+..+....+ .+| -++++++++++++.+. +...
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~-----~~lvav~d~~~~~~~~~a~~----------------------~~~~---- 68 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDD-----VEIVAFADPDPYMVGRAQEI----------------------LKKN---- 68 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTT-----EEEEEEECSCHHHHHHHHHH----------------------HHHT----
T ss_pred CceEEEEecCHHHHHHHHHHHhCCC-----cEEEEEEeCCHHHHHHHHHH----------------------HHhc----
Confidence 4799999999999999888876413 564 5789988765432110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEec----CHHHHhc--CCCEEEEecCchhHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVT----NLQEAVW--DADIVINGLPSTETKEVFEE 179 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~----d~~~a~~--~aDlVIiaVp~~~~~~vl~~ 179 (303)
.+ +...+.+ |.++.++ +.|+|++++|.....++..+
T Consensus 69 ---g~-------------------~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~ 110 (444)
T 2ixa_A 69 ---GK-------------------KPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVA 110 (444)
T ss_dssp ---TC-------------------CCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHH
T ss_pred ---CC-------------------CCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 00 0234455 8888776 58999999999876655554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=60.70 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=31.3
Q ss_pred CCceEEEEC-CChHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 022050 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIG-aG~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~ 82 (303)
.++||+|+| +|.+|+.+|..|+.. |.+. ....+.|+|+++
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~-~~~~e~~~~~l~L~Di~~ 44 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITP 44 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC-CCccccCCCEEEEEeCCC
Confidence 468999999 799999999999987 6431 112489999975
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=59.32 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=35.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
..+++.|+|+|.+|.+++..|++. | . +|++++|++++.++
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~~-G-----~~~v~i~~R~~~~a~~ 166 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVTH-G-----VQKLQVADLDTSRAQA 166 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEECCHHHHHH
Confidence 347899999999999999999998 8 5 79999999887654
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00061 Score=65.83 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=39.8
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+.-++-+++..+..- .-++|+|+|+|.+|..+|..+... | .+|+++++++..
T Consensus 204 ~s~~~gi~rat~~~L-~GktV~ViG~G~IGk~vA~~Lra~-G-----a~Viv~D~dp~r 255 (435)
T 3gvp_A 204 ESILDGLKRTTDMMF-GGKQVVVCGYGEVGKGCCAALKAM-G-----SIVYVTEIDPIC 255 (435)
T ss_dssp HHHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHH
T ss_pred HHHHHHHHHhhCcee-cCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEeCChhh
Confidence 445566666544332 237999999999999999999887 8 789999998753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0013 Score=64.26 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=33.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++||+|+|+|.+|.+++..|++. + +++|++++|+++++++
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~-~----g~~V~v~~R~~~ka~~ 62 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAAN-D----DINVTVACRTLANAQA 62 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-T----TEEEEEEESSHHHHHH
T ss_pred CCEEEEECChHHHHHHHHHHHhC-C----CCeEEEEECCHHHHHH
Confidence 47899999999999999999986 4 2789999999876543
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=63.65 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=33.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~ 85 (303)
-++|+|+|+|.||.+++..+... | . +|++++|++++.
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~-G-----~~~V~v~~r~~~ra 204 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDR-G-----VRAVLVANRTYERA 204 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHH-C-----CSEEEEECSSHHHH
T ss_pred CCEEEEEChHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHH
Confidence 47999999999999999999988 8 6 899999998654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0011 Score=60.15 Aligned_cols=66 Identities=15% Similarity=0.307 Sum_probs=46.1
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|-++.+|-.-.--...|++ .+.. ..+++.|+|+|.+|.+++..|+.. |. .+|++|+|+.++.++
T Consensus 93 ~~g~l~g~NTD~~G~~~~l~~-~~~~--~~~~vlvlGaGgaarav~~~L~~~-G~----~~i~v~nRt~~ka~~ 158 (271)
T 1npy_A 93 DNGFLRAYNTDYIAIVKLIEK-YHLN--KNAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQY 158 (271)
T ss_dssp ETTEEEEECHHHHHHHHHHHH-TTCC--TTSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHHH
T ss_pred cCCEEEeecCCHHHHHHHHHH-hCCC--CCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHHH
Confidence 356555555544444444444 2222 237899999999999999999998 81 379999999876543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0037 Score=57.63 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=29.8
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCee-EEEEecCCch
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (303)
.|+||+|||+ |.||...+..+... + .+ |-++|++++.
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~-----~~lvav~d~~~~~ 40 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDT-G-----NCLVSAYDINDSV 40 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHT-T-----CEEEEEECSSCCC
T ss_pred CceEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEEcCCHHH
Confidence 4789999999 78999999999887 6 44 5678888764
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0037 Score=57.43 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=68.0
Q ss_pred hccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccc
Q 022050 36 MGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (303)
Q Consensus 36 ~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l 114 (303)
|...-....+++|+|+ |.||..++..+.+. | ++ .++..++..... ..
T Consensus 6 ~~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g~-------------------------~i 53 (297)
T 2yv2_A 6 MAVLVDSETRVLVQGITGREGSFHAKAMLEY-G-----TK-VVAGVTPGKGGS-------------------------EV 53 (297)
T ss_dssp ---CCSTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE
T ss_pred hhHhhCCCCEEEEECCCCCHHHHHHHHHHhC-C-----Cc-EEEEeCCCCCCc-------------------------eE
Confidence 3333345578999999 99999999999887 8 66 455555532100 00
Q ss_pred hhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--C-CCEEEEecCchhHHHHHHHHHHHhhccCCCC
Q 022050 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--D-ADIVINGLPSTETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~-aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~ 191 (303)
..+.+..+++++.+ . +|++++++|+....+++++.... . -.
T Consensus 54 -------------------------------~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~~-G----i~ 97 (297)
T 2yv2_A 54 -------------------------------HGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDA-G----IR 97 (297)
T ss_dssp -------------------------------TTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHT-T----CS
T ss_pred -------------------------------CCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHHC-C----CC
Confidence 13556677887765 4 99999999999999988887653 1 23
Q ss_pred EEEEeeccCccc
Q 022050 192 VIISLAKGVEAE 203 (303)
Q Consensus 192 iivs~~nGi~~~ 203 (303)
.++..+.|+...
T Consensus 98 ~vVi~t~G~~~~ 109 (297)
T 2yv2_A 98 LVVVITEGIPVH 109 (297)
T ss_dssp EEEECCCCCCHH
T ss_pred EEEEECCCCCHH
Confidence 366678888653
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=60.31 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=57.7
Q ss_pred CceEEEECCChHHH-HHHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||. ..+..+....+ .+| -++++++++.
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~-----~~lvav~d~~~~~~----------------------------------- 64 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNAN-----FKLVATASRHGTVE----------------------------------- 64 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTT-----EEEEEEECSSCCCT-----------------------------------
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEEeCChhhc-----------------------------------
Confidence 48999999999998 68888876512 554 4567765310
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~---~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
++...+|.++.++ +.|+|++++|+....++..+.. .. +..|+ +-
T Consensus 65 --------------------------g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al---~a---GkhVl-~E 111 (330)
T 4ew6_A 65 --------------------------GVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKAL---VA---GKHVF-LE 111 (330)
T ss_dssp --------------------------TSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHH---HT---TCEEE-EC
T ss_pred --------------------------CCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH---Hc---CCcEE-Ee
Confidence 2335567777664 4899999999987766655543 33 44444 55
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
|.+..
T Consensus 112 KP~a~ 116 (330)
T 4ew6_A 112 KPPGA 116 (330)
T ss_dssp SSSCS
T ss_pred CCCCC
Confidence 65544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00098 Score=63.96 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=34.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..||+|+|+|.+|...+..+... | .+|++||+++++++.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~ 228 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRL-G-----AVVSATDVRPAAKEQ 228 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSTTHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 47999999999999999998887 8 899999999986654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0024 Score=59.43 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=32.3
Q ss_pred CeEEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 147 PLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 147 ~i~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+.+.+|.++.+.+ .|+|++++|+....++..+.. .. +..|+ +-|.+..
T Consensus 50 ~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~Vl-~EKP~a~ 100 (349)
T 3i23_A 50 GVNFTADLNELLTDPEIELITICTPAHTHYDLAKQAI---LA---GKSVI-VEKPFCD 100 (349)
T ss_dssp TCEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEEE-ECSCSCS
T ss_pred CCeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHH---Hc---CCEEE-EECCCcC
Confidence 35567788887765 899999999987766655443 33 44444 3555543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0051 Score=59.72 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=36.5
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCchhhh
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDR 87 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~~~~ 87 (303)
|-++|++.... .++.||+|||+|.||..++..+....+ .+ +-++|+++++.++
T Consensus 10 l~~~l~~r~~~-----~k~IRVGIIGaG~iG~~~~~~l~~~~~-----veLvAV~D~~~era~~ 63 (446)
T 3upl_A 10 LARDLAARAET-----GKPIRIGLIGAGEMGTDIVTQVARMQG-----IEVGALSARRLPNTFK 63 (446)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEECCSHHHHHHHHHHTTSSS-----EEEEEEECSSTHHHHH
T ss_pred HHHHHHHHHhc-----CCceEEEEECChHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHH
Confidence 45555544332 245899999999999999988865412 44 4577888876653
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=62.93 Aligned_cols=82 Identities=13% Similarity=0.117 Sum_probs=56.4
Q ss_pred CceEEEECC----ChHHHHHHHHHHHh-cCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchh
Q 022050 43 PLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (303)
Q Consensus 43 ~~kI~VIGa----G~mG~aiA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~ 116 (303)
++||+|||+ |.||...+..|.+. .+ .++ -++++++++.+++.++ . +
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~a~~----------------------~-g 71 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQ-----FQITALYSPKIETSIATIQR----------------------L-K 71 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTT-----EEEEEEECSSHHHHHHHHHH----------------------T-T
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHHHH----------------------c-C
Confidence 489999999 99999999988764 23 565 5789887755431100 0 0
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
. +...+.+|.++.+. +.|+|++++|.....+++...
T Consensus 72 ~----------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~a 109 (438)
T 3btv_A 72 L----------------------------SNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPL 109 (438)
T ss_dssp C----------------------------TTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHHH
T ss_pred C----------------------------CcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHH
Confidence 0 12346678888775 689999999998766555543
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0037 Score=58.10 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=57.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCC--CCCee-EEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYL--RDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~--~~~~~-V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
-||+|||+|.||..-+..+......+ .+..+ |-++|+++++++++.+ .+
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~-------------------------~~--- 77 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAG-------------------------EF--- 77 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHH-------------------------HH---
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHH-------------------------Hh---
Confidence 58999999999987766553320000 00134 4578999876653211 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.-.++.+|.++.++ +.|+|++|+|+..-.++..+... . +..| -+-|
T Consensus 78 -------------------------g~~~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~---a---GkhV-l~EK 125 (393)
T 4fb5_A 78 -------------------------GFEKATADWRALIADPEVDVVSVTTPNQFHAEMAIAALE---A---GKHV-WCEK 125 (393)
T ss_dssp -------------------------TCSEEESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEE-EECS
T ss_pred -------------------------CCCeecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHh---c---CCeE-EEcc
Confidence 01245678888765 57999999999876665554332 2 3333 3566
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 126 Pla~ 129 (393)
T 4fb5_A 126 PMAP 129 (393)
T ss_dssp CSCS
T ss_pred CCcc
Confidence 6554
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00061 Score=64.96 Aligned_cols=117 Identities=17% Similarity=0.260 Sum_probs=73.1
Q ss_pred ceEEEECCChHHHHHHH-HHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTA-MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~-~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
||+..+|+|++|.++.. .|.++ | ++|++.++++..++++|+++++.+.- .+..
T Consensus 1 mkavhfGaGniGRGfig~~l~~~-g-----~~v~f~dv~~~~i~~Ln~~~~Y~V~~----------------~g~~---- 54 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA-G-----IQLTFADVNQVVLDALNARHSYQVHV----------------VGET---- 54 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHSEEEEEE----------------ESSS----
T ss_pred CcEEEECCCccchhhHHHHHHHc-C-----CeEEEEeCCHHHHHHHhcCCCEEEEE----------------ccCC----
Confidence 89999999999966554 56666 8 89999999998888877654321110 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe-c---CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhcc----C-CCCEE
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV-T---NLQEAVWDADIVINGLPSTETKEVFEEISRYWKER----I-TVPVI 193 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~---d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~----~-~~~ii 193 (303)
. .. + . ..++++. + +.-+++.++|+|..++.+...+.+...|...+..+ . +.-.|
T Consensus 55 ~-~~---~------~-------v~~v~ai~s~~~~~~~~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~plti 117 (382)
T 3h2z_A 55 E-QV---D------T-------VSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNI 117 (382)
T ss_dssp E-EE---E------E-------EESCEEEETTSSHHHHHHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEE
T ss_pred c-ce---E------E-------EEEEEEEeCcHHHHHHHHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEE
Confidence 0 00 0 0 0133332 1 23345679999999999988777777766555321 1 13457
Q ss_pred EEeeccCccc
Q 022050 194 ISLAKGVEAE 203 (303)
Q Consensus 194 vs~~nGi~~~ 203 (303)
+|+-|-..++
T Consensus 118 lsCeN~~~ng 127 (382)
T 3h2z_A 118 IACENMVRGT 127 (382)
T ss_dssp EECCSSTTHH
T ss_pred EECCCccchH
Confidence 8888776654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0044 Score=57.07 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec--CCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r--~~~ 83 (303)
|||+|+|+ |.+|+.++..|+.. |.. .++.++|+ +++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~ 39 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHSIN 39 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGGHH
T ss_pred CEEEEECCCChhHHHHHHHHHhC-CCC---CEEEEEcCCCchh
Confidence 79999999 99999999999887 621 36899998 544
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0077 Score=55.50 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCceEEEE-CC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VI-Ga-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.+.+++|| |+ |.+|...+..|.+. | ++ .++..++..... ..
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~-G-----~~-~v~~VnP~~~g~-------------------------~i----- 54 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEY-G-----TN-LVGGTTPGKGGK-------------------------TH----- 54 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE-----
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHC-C-----Cc-EEEEeCCCcCcc-------------------------eE-----
Confidence 34678888 99 99999999999888 8 67 455666542100 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
..+.+..+++++.+ +.|+++++||+....++++++... . -..++.++
T Consensus 55 --------------------------~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~~e~i~~-G----i~~iv~~t 103 (305)
T 2fp4_A 55 --------------------------LGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDA-E----VPLVVCIT 103 (305)
T ss_dssp --------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECC
T ss_pred --------------------------CCeeeechHHHhhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence 13556667888777 899999999999999999887653 1 13556788
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
.|+..
T Consensus 104 ~G~~~ 108 (305)
T 2fp4_A 104 EGIPQ 108 (305)
T ss_dssp CCCCH
T ss_pred CCCCh
Confidence 88864
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0013 Score=62.94 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+||+|+|+|.+|..++..|++. |.+. .+|.+++|+++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~-g~~~--~~V~v~~r~~~~~~~ 42 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN-REVF--SHITLASRTLSKCQE 42 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-TTTC--CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCCc--eEEEEEECCHHHHHH
Confidence 47999999999999999999987 6100 279999999887654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00082 Score=63.70 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..++|+|+|+|.+|.+++..+... | .+|+++++++++++
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-G-----a~V~~~d~~~~~l~ 205 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-G-----ATVTVLDINIDKLR 205 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHH
Confidence 358999999999999999999887 8 79999999987654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0027 Score=57.24 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=35.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++++|+|+|.||.+++..|++. | .+|++|+|+++++++
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~~-G-----~~v~v~~R~~~~a~~ 157 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE 157 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 347999999999999999999998 8 899999999876654
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00089 Score=63.50 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.+.||+|||+| ||...+..+++. . ++.++. ++++++++.+++.+ .
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~-~---~~~elvav~~~~~~~a~~~a~-------------------------~---- 51 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQP-P---EGLELVGLLAQGSARSRELAH-------------------------A---- 51 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSC-C---TTEEEEEEECCSSHHHHHHHH-------------------------H----
T ss_pred CCCEEEEEehH-HHHHHHHHHHhC-C---CCeEEEEEECCCHHHHHHHHH-------------------------H----
Confidence 45899999999 898877766553 1 114544 78998876543210 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~ 172 (303)
.++...+|.++.+.+.|++++++|...
T Consensus 52 -------------------------~gv~~~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 52 -------------------------FGIPLYTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp -------------------------TTCCEESSGGGCCSCCSEEEECCC--C
T ss_pred -------------------------hCCCEECCHHHHhcCCCEEEEECCCcc
Confidence 023456778887888999999998864
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0029 Score=61.77 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=56.8
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHh-cCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccch
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~ 115 (303)
.++||+|||+ |.||...+..|... .+ .+| -++++++++.+++.++ +
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~-----~~lvav~d~~~~~a~~~a~~---------------------~-- 89 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-----FQIVALYNPTLKSSLQTIEQ---------------------L-- 89 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTT-----EEEEEEECSCHHHHHHHHHH---------------------T--
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHHHHH---------------------c--
Confidence 3579999999 99999999988763 14 565 4789887755431100 0
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHH
Q 022050 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (303)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l 180 (303)
+. +...+.+|.++.++ +.|+|++++|.....+++...
T Consensus 90 g~----------------------------~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~a 128 (479)
T 2nvw_A 90 QL----------------------------KHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNI 128 (479)
T ss_dssp TC----------------------------TTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHH
T ss_pred CC----------------------------CcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 00 12346678888774 689999999998766555543
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0049 Score=56.48 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=67.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
...+++|+|+ |.||..++..+.+. | ++ .++..++..... ..
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~-g-----~~-~V~~VnP~~~g~-------------------------~i------ 53 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLEC-G-----TK-IVGGVTPGKGGQ-------------------------NV------ 53 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHT-T-----CC-EEEEECTTCTTC-------------------------EE------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhC-C-----Ce-EEEEeCCCCCCc-------------------------eE------
Confidence 4478899999 99999999999887 7 66 556666542100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
..+.+..+++++.+ ++|++++++|+....+++++.... . -..++..+.
T Consensus 54 -------------------------~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~~~-G----i~~vVi~t~ 103 (294)
T 2yv1_A 54 -------------------------HGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDA-G----IELIVVITE 103 (294)
T ss_dssp -------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred -------------------------CCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 13556678888777 899999999999999888886653 1 234666788
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|+...
T Consensus 104 G~~~~ 108 (294)
T 2yv1_A 104 HIPVH 108 (294)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 88653
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0036 Score=58.16 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=60.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCC---CCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGY---LRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~---~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
-||+|||+|.||...+..+... .. +....+| -++|+++++++++.+ .+
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~-------------------------~~-- 58 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAG-------------------------KL-- 58 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHH-------------------------HH--
T ss_pred CcEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHH-------------------------Hc--
Confidence 4799999999999888877654 20 0000244 477888876543210 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.-.++.+|.++.+. +.|+|++++|+....++..+... . +..| -+-
T Consensus 59 --------------------------g~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~---a---GkhV-l~E 105 (390)
T 4h3v_A 59 --------------------------GWSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALE---A---GKHV-LCE 105 (390)
T ss_dssp --------------------------TCSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHH---T---TCEE-EEE
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---c---CCCc-eee
Confidence 01245678888764 57999999999876665554332 2 3333 356
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
|.+..+
T Consensus 106 KPla~t 111 (390)
T 4h3v_A 106 KPLANT 111 (390)
T ss_dssp SSSCSS
T ss_pred cCcccc
Confidence 665543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0025 Score=63.09 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=36.2
Q ss_pred hhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+++|+..++..... ++|.|+|+|.+|..+|..|.+. | ++|++++.+++.+++
T Consensus 333 ~~l~~~~~~~~~~~~~-~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~ 386 (565)
T 4gx0_A 333 SQLAALEYLIGEAPED-ELIFIIGHGRIGCAAAAFLDRK-P-----VPFILIDRQESPVCN 386 (565)
T ss_dssp --------------CC-CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSCCSSCC
T ss_pred HHHHHHHHHhcCCCCC-CCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECChHHHhh
Confidence 4566677777765545 8999999999999999999998 8 999999999987653
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0025 Score=59.87 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=60.0
Q ss_pred CceEEEEC-CChHHHH-HH----HHHHHhcCCCCCCeeE----------EEEecCCchhhhhhhhhHHHHHhhhhhHHHH
Q 022050 43 PLRIVGVG-AGAWGSV-FT----AMLQDSYGYLRDKVLI----------RIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~a-iA----~~La~~~G~~~~~~~V----------~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~ 106 (303)
++||+||| +|.||.. .+ ..+... +. ..+ .++++++++.+++.+
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~-~~----~~l~~~~~~~~~~av~~~~~~~a~~~a~---------------- 64 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQ-GG----VRLKNGDRIMPDPILVGRSAEKVEALAK---------------- 64 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHH-TS----EECTTSCEEEEEEEEECSSSHHHHHHHH----------------
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhc-Cc----eeecCCcccceeeEEEcCCHHHHHHHHH----------------
Confidence 48999999 9999998 66 666665 41 222 389999876543210
Q ss_pred hhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCchhHHHHHHHHHHH
Q 022050 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~d~~~a~~~--aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
.. ++ .+++|.++.+.+ .|+|++++|+....++..+.
T Consensus 65 ---------~~-----------------------------~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~a--- 103 (383)
T 3oqb_A 65 ---------RF-----------------------------NIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQA--- 103 (383)
T ss_dssp ---------HT-----------------------------TCCCEESCHHHHHHCSSCCEEEECSCSSSSHHHHHHH---
T ss_pred ---------Hh-----------------------------CCCcccCCHHHHhcCCCCCEEEECCCchHHHHHHHHH---
Confidence 00 12 356788887754 89999999987655554443
Q ss_pred hhccCCCCEEEEeeccCcc
Q 022050 184 WKERITVPVIISLAKGVEA 202 (303)
Q Consensus 184 l~~~~~~~iivs~~nGi~~ 202 (303)
+.. +..|+ +-|.+..
T Consensus 104 l~~---Gk~V~-~EKP~a~ 118 (383)
T 3oqb_A 104 INA---GKHVY-CEKPIAT 118 (383)
T ss_dssp HTT---TCEEE-ECSCSCS
T ss_pred HHC---CCeEE-EcCCCCC
Confidence 233 44444 5565544
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0058 Score=57.17 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=61.8
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
.|+||+|+|+ |.+|..+...|..+ . ..++..+..+.. +..+ . +.+ ..+.+.
T Consensus 3 ~M~kv~IvGatG~vG~~l~~~L~~~-p----~~el~~l~s~~~~~saGk----~----~~~-------------~~p~~~ 56 (337)
T 3dr3_A 3 AMLNTLIVGASGYAGAELVTYVNRH-P----HMNITALTVSAQSNDAGK----L----ISD-------------LHPQLK 56 (337)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHC-T----TEEEEEEEEETTCTTTTS----B----HHH-------------HCGGGT
T ss_pred CceEEEEECCCChHHHHHHHHHHhC-C----CCcEEEEEecCchhhcCC----c----hHH-------------hCcccc
Confidence 4689999996 99999999999875 2 167766544431 1110 0 000 011110
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEec--CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEe
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVT--NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~--d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~ 196 (303)
. . ..+.+.. +.++...++|+||+|+|.....+..+++. .. ++.+|.+
T Consensus 57 ----~------------~---------~~~~v~~~~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~---~~---g~~vIDl 105 (337)
T 3dr3_A 57 ----G------------I---------VELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFL---EA---GCVVFDL 105 (337)
T ss_dssp ----T------------T---------CCCBEEEESSGGGTCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEEC
T ss_pred ----C------------c---------cceeEeccCCHHHHhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEc
Confidence 0 0 0122222 44443378999999999998777777653 33 6788888
Q ss_pred eccC
Q 022050 197 AKGV 200 (303)
Q Consensus 197 ~nGi 200 (303)
+.-+
T Consensus 106 Sa~f 109 (337)
T 3dr3_A 106 SGAF 109 (337)
T ss_dssp SSTT
T ss_pred CCcc
Confidence 7654
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0022 Score=51.40 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=62.4
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.+++|+|||+ +.+|..+...|.+. | ++|+.+.+..+.+.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~------------------------------- 45 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSH-G-----HEFIPVGRKKGEVL------------------------------- 45 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHH-T-----CCEEEESSSCSEET-------------------------------
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHC-C-----CeEEEECCCCCcCC-------------------------------
Confidence 4688999998 67999999999998 8 77777776543221
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
..++..++.+.-+ .|++++++|+....++++++... .. . . +.++
T Consensus 46 -----------------------------G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~-g~---k-~-v~~~ 89 (122)
T 3ff4_A 46 -----------------------------GKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSL-KP---K-R-VIFN 89 (122)
T ss_dssp -----------------------------TEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH-CC---S-E-EEEC
T ss_pred -----------------------------CeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc-CC---C-E-EEEC
Confidence 1122223333224 89999999999999999997763 22 2 3 4578
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
.|+...
T Consensus 90 ~G~~~~ 95 (122)
T 3ff4_A 90 PGTENE 95 (122)
T ss_dssp TTCCCH
T ss_pred CCCChH
Confidence 887643
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00086 Score=63.25 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..++|+|+|+|.+|..++..+... | .+|+++++++++++
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-G-----a~V~~~d~~~~~~~ 203 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-G-----AQVTILDVNHKRLQ 203 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 348999999999999999999988 8 89999999987654
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0043 Score=56.58 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=34.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|.+|.+++..|++. | . +|++++|++++.++
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~~ 165 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQ-Q-----PASITVTNRTFAKAEQ 165 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-C-----CSEEEEEESSHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhc-C-----CCeEEEEECCHHHHHH
Confidence 47999999999999999999998 8 5 89999999876654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=63.44 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..||+|+|+|.+|...+..+... | .+|+++|++++.++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~v~D~~~~~~~~ 210 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKEQ 210 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCGGGHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHHH
Confidence 47999999999999999998877 8 789999999876543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0071 Score=54.41 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=34.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++++|+|+|.||.+++..|++. | .+|++++|+++++++
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~-G-----~~V~v~~R~~~~~~~ 157 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE 157 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 47899999999999999999998 8 899999999876543
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0053 Score=55.84 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCceEEEECCChHHHHHHHHHHH
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQD 64 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~ 64 (303)
.++||+|||+|.||...+..+..
T Consensus 6 ~~~rvgiIG~G~iG~~~~~~l~~ 28 (294)
T 1lc0_A 6 GKFGVVVVGVGRAGSVRLRDLKD 28 (294)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTS
T ss_pred CcceEEEEEEcHHHHHHHHHHhc
Confidence 46899999999999998888765
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0043 Score=53.14 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=33.0
Q ss_pred Cce-EEEECC-ChHHHHHHHHHH-HhcCCCCCCeeEEEEecCCc-hhh
Q 022050 43 PLR-IVGVGA-GAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR-SVD 86 (303)
Q Consensus 43 ~~k-I~VIGa-G~mG~aiA~~La-~~~G~~~~~~~V~l~~r~~~-~~~ 86 (303)
||| |.|.|+ |.+|.+++..|+ +. | ++|++++|+++ +++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~-g-----~~V~~~~r~~~~~~~ 45 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT-D-----MHITLYGRQLKTRIP 45 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC-C-----CEEEEEESSHHHHSC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC-C-----ceEEEEecCccccch
Confidence 455 999996 999999999999 77 8 89999999987 554
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0029 Score=57.44 Aligned_cols=39 Identities=21% Similarity=0.352 Sum_probs=35.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|.+|.+++..|++. | .+|++++|++++.++
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~-G-----~~v~V~nRt~~ka~~ 156 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQ-G-----LQVSVLNRSSRGLDF 156 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 58999999999999999999998 8 899999999987654
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0072 Score=56.22 Aligned_cols=38 Identities=11% Similarity=0.090 Sum_probs=28.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeE-EEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V-~l~~r~~~~~ 85 (303)
++||+|+|+|.||..++..+... . +.++ .+.+++++..
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~-~----~~elvav~d~~~~~~ 40 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKPDFE 40 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSCSHH
T ss_pred CcEEEEEeEhHHHHHHHHHHhcC-C----CCEEEEEEcCCHHHH
Confidence 36999999999999999999875 3 1454 4567766544
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0052 Score=58.52 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=65.9
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC----Cchhhh-hhhhhHHHHHhhhhhHHHHhhhhcccch
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP----GRSVDR-ATAEHLFEVINSREDVLRRLIRRCAYLK 115 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~----~~~~~~-~~~~~l~~~i~~~~~~~~~~~~~~~~l~ 115 (303)
-...||+|+|+|.+|.++|..+... |. .+|+++||+ .++.+. ++. +.+.+. .
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~-G~----~~I~v~Dr~Gli~~~R~~~~L~~--~k~~~A----------------~ 246 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRKGILNENDPETCLNE--YHLEIA----------------R 246 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTEECCTTSGGGCSSH--HHHHHH----------------H
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEECCCcccCCCcccccCH--HHHHHH----------------H
Confidence 3458999999999999999999998 82 489999998 443110 110 000000 0
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEE
Q 022050 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 116 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
+. + ......++.++++++|++|=+..+. ..+++++++ .+ +.+|+
T Consensus 247 ---------~~------------~-------~~~~~~~L~eav~~ADVlIG~Sap~l~t~emVk~M----a~---~pIIf 291 (388)
T 1vl6_A 247 ---------IT------------N-------PERLSGDLETALEGADFFIGVSRGNILKPEWIKKM----SR---KPVIF 291 (388)
T ss_dssp ---------TS------------C-------TTCCCSCHHHHHTTCSEEEECSCSSCSCHHHHTTS----CS---SCEEE
T ss_pred ---------hh------------h-------ccCchhhHHHHHccCCEEEEeCCCCccCHHHHHhc----CC---CCEEE
Confidence 00 0 0111357899999999988877543 456666663 34 56888
Q ss_pred EeeccC
Q 022050 195 SLAKGV 200 (303)
Q Consensus 195 s~~nGi 200 (303)
.++|..
T Consensus 292 alSNPt 297 (388)
T 1vl6_A 292 ALANPV 297 (388)
T ss_dssp ECCSSS
T ss_pred EcCCCC
Confidence 888754
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0064 Score=56.85 Aligned_cols=97 Identities=10% Similarity=0.108 Sum_probs=54.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|+|+|.||..++..+..+ . ..++. +.+++++...+. .... + -+.+...
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~-p----~~elvav~d~~~~~~~~~--------a~~~-------g-~~~~~~~----- 54 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQ-P----DMKLVGVAKTSPNYEAFI--------AHRR-------G-IRIYVPQ----- 54 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEECSSCSHHHHH--------HHHT-------T-CCEECCG-----
T ss_pred CeEEEEEecCHHHHHHHHHHHcC-C----CCEEEEEEcCChHHHHHH--------HHhc-------C-cceecCc-----
Confidence 36999999999999999999875 3 14543 456654432211 0000 0 0001000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
.|++...+ ..+.++.+.++...++|+||+|+|.....+..+...
T Consensus 55 -----~~~~~~~~-----------~~v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~ 98 (340)
T 1b7g_O 55 -----QSIKKFEE-----------SGIPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYL 98 (340)
T ss_dssp -----GGHHHHHT-----------TTCCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHH
T ss_pred -----CHHHHhcc-----------cccccccCHhHhhcCCCEEEECCCCchhHHHHHHHH
Confidence 00000000 124445667666678999999999997776665543
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0037 Score=57.11 Aligned_cols=38 Identities=18% Similarity=0.109 Sum_probs=34.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (303)
.+++.|+|+|.+|.+++..|++. | . +|++++|+.++.+
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~-G-----~~~v~v~nRt~~ka~ 160 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDN-F-----AKDIYVVTRNPEKTS 160 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHT-T-----CSEEEEEESCHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHH
Confidence 47999999999999999999998 8 5 8999999987654
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0044 Score=57.94 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=27.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~ 83 (303)
|+||+|+|+|.||..++..|.++ . +.++. +.++++.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-~----~~elvav~d~~~~ 37 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-D----DMKVIGVSKTRPD 37 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-S----SEEEEEEEESSCS
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-C----CcEEEEEEcCChh
Confidence 47999999999999999999875 2 14543 3566544
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.016 Score=51.66 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||.|+|+|.+|+.++..|+.. |. ..++++|++.-
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~-Gv----g~i~lvD~d~v 63 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGA-GV----GTLVLADDDDV 63 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT-TC----SEEEEECCCBC
T ss_pred cCcEEEEccCHHHHHHHHHHHHc-CC----CeEEEEeCCCc
Confidence 37999999999999999999998 83 48999998763
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.017 Score=51.53 Aligned_cols=29 Identities=17% Similarity=0.333 Sum_probs=23.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEE
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRI 77 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l 77 (303)
|||+|+|+ |.||..++..+....+ +++..
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~-----~elva 30 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADD-----LTLSA 30 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTT-----CEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-----CEEEE
Confidence 69999997 9999999998875413 66653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0033 Score=59.56 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=34.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...||+|+|+|.+|...+..+... | ..|+++++++++.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~~~d~~~~~~~~ 210 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKEQ 210 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 457999999999999999988877 8 789999999876543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.027 Score=52.72 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||.|+|+|..|+.+|..|+.. |. ..++++|++.-
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~a-GV----g~ItlvD~D~V 69 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGTV 69 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCBC
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CC----CEEEEecCCEe
Confidence 47999999999999999999998 83 58999998763
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=54.12 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=28.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (303)
++||+|||+|.+|..++..+.++.. ..+ +.++++++++
T Consensus 4 ~irVaIIG~G~iG~~~~~~l~~~~~----~~elvav~d~~~~~ 42 (312)
T 1nvm_B 4 KLKVAIIGSGNIGTDLMIKVLRNAK----YLEMGAMVGIDAAS 42 (312)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCS----SEEEEEEECSCTTC
T ss_pred CCEEEEEcCcHHHHHHHHHHHhhCc----CeEEEEEEeCChhh
Confidence 4799999999999999999976311 144 4567888765
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0048 Score=56.99 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=59.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCC-chhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.+|...+..+ .. + .+|+ ++++++ ++.++..+ ..+..
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~-~-----~~lvav~d~~~~~~~~~~~~----------------------~~~~~--- 49 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DE-E-----CSITGIAPGVPEEDLSKLEK----------------------AISEM--- 49 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CT-T-----EEEEEEECSSTTCCCHHHHH----------------------HHHTT---
T ss_pred ceEEEEEccchhHHHHHHhc-CC-C-----cEEEEEecCCchhhHHHHHH----------------------HHHHc---
Confidence 47999999999988776666 33 4 6655 678887 44432110 00000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
. ...++.+|.++.+. +.|+|++++|+....++..+.. .. +..|+ +-|
T Consensus 50 ----~--------------------~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al---~a---GkhVl-~EK 98 (337)
T 3ip3_A 50 ----N--------------------IKPKKYNNWWEMLEKEKPDILVINTVFSLNGKILLEAL---ER---KIHAF-VEK 98 (337)
T ss_dssp ----T--------------------CCCEECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHH---HT---TCEEE-ECS
T ss_pred ----C--------------------CCCcccCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHH---HC---CCcEE-EeC
Confidence 0 01346678888765 5899999999987666555433 32 44433 556
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 99 Pla~ 102 (337)
T 3ip3_A 99 PIAT 102 (337)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 5554
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0024 Score=58.95 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=32.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++|.|+|+|.+|..++..|.+. | + |++++++++.++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~-g-----~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 151 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGS-C-----E-EEEESCGGGHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhC-C-----c-EEEEeCChhhhh
Confidence 46899999999999999999888 8 8 999999998664
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=59.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..||.|||+|..|+.+|..|+.. |. ..++++|.+.
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~a-GV----G~ItLvD~D~ 361 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 361 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TC----CEEEEECCSB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 47999999999999999999998 83 5899998874
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0067 Score=52.69 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=33.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|+|.|.|+ |.+|.+++..|++. | .++|++++|+++.++
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~-G----~~~V~~~~R~~~~~~ 62 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADK-Q----TIKQTLFARQPAKIH 62 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-T----TEEEEEEESSGGGSC
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhC-C----CceEEEEEcChhhhc
Confidence 578999995 99999999999988 7 168999999987554
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0074 Score=57.41 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=29.6
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|+||+|+|.....++.+++. +. ++.+|++++-+
T Consensus 90 ~~~~~Dvvf~alp~~~s~~~~~~~~---~~---G~~VIDlSa~f 127 (381)
T 3hsk_A 90 NFLECDVVFSGLDADVAGDIEKSFV---EA---GLAVVSNAKNY 127 (381)
T ss_dssp TGGGCSEEEECCCHHHHHHHHHHHH---HT---TCEEEECCSTT
T ss_pred hcccCCEEEECCChhHHHHHHHHHH---hC---CCEEEEcCCcc
Confidence 3578999999999998887777764 33 67888888665
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0075 Score=58.47 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=33.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++|+|+|+|.+|.+++..|++. | ++|++++|++++++
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~-G-----~~V~v~~R~~~~a~ 40 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAK 40 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-c-----CEEEEEECCHHHHH
Confidence 37899999999999999999988 8 78999999986554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=56.14 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=47.2
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+.++++++.+++.+...++|.|+|+|.+|..+|..|-++ ++|.++.+++++.+.
T Consensus 218 ~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-------~~v~iIE~d~~r~~~ 272 (461)
T 4g65_A 218 SNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-------YSVKLIERNLQRAEK 272 (461)
T ss_dssp TTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred cchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-------CceEEEecCHHHHHH
Confidence 4567788888898888889999999999999999998543 799999999987754
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0079 Score=56.01 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=28.8
Q ss_pred CceEEEECCChHHHHHHHHHHHh--------cCCCCCCeeE-EEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS--------YGYLRDKVLI-RIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~--------~G~~~~~~~V-~l~~r~~~~~ 85 (303)
|+||+|||+|.||+.++..+.++ .+ .+| -+++++++..
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~-----~~lvaV~d~~~~~~ 48 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGE-----FKVTAVADSKSSIS 48 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCC-----EEEEEEECSSCEEE
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCC-----EEEEEEEeCChHhc
Confidence 68999999999999999998764 12 454 4567776554
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.028 Score=52.61 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=39.8
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|.+.-.++++..... ..||+|+|+|..|+.+|..|+.. |. ..++++|.+.
T Consensus 16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~-Gv----g~itlvD~d~ 70 (346)
T 1y8q_A 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILA-GV----KGLTMLDHEQ 70 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCC
Confidence 34555555666654422 37899999999999999999999 93 4899998875
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.007 Score=57.24 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=43.2
Q ss_pred cCCchhhhhhHH-HHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 21 TNGSLEERLDEL-RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 21 ~~~~~~~~~~~~-~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|.++.-.-.+++ +..++..+-.-++|+|+|+|+||..+|..|.+. | ..|+++|++++.++
T Consensus 150 Tg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~-G-----akVvv~D~~~~~l~ 210 (364)
T 1leh_A 150 TAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAVS 210 (364)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred hhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 444443344444 333454333448999999999999999999998 9 88999999876544
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0041 Score=57.10 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=43.2
Q ss_pred eccCCch--hhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 19 HHTNGSL--EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||..||. +.+.+.+.+.+++. +|+|.|.|+ |.+|..++..|++. | ++|++++|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (352)
T 1sb8_A 4 HHHHGSMGMMSRYEELRKELPAQ---PKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNFAT 62 (352)
T ss_dssp --------CCCHHHHHHHHHHHS---CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred cccccchHHHHHHHhhchhcCcc---CCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 5666776 78888888887764 489999999 99999999999998 8 89999999764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.013 Score=54.96 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.2
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
+||+|+| .|.+|..++..|..+ . ..+|+.+.++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p----~~ev~~i~~s 42 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-P----MFELTALAAS 42 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-S----SEEEEEEEEC
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-C----CCEEEEEEcc
Confidence 6999999 699999999998875 3 2577766543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.029 Score=52.59 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=32.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..||.|+|+|..|+.+|..|+.. |. ..++++|++.-.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~a-Gv----g~i~lvD~D~Ve 154 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATS-GI----GEIILIDNDQIE 154 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEEECCBCC
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEECCCcCc
Confidence 47899999999999999999999 93 589999998633
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0032 Score=58.30 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=32.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.|||+|||+|.-|.++|..|++. | ++|++++++++
T Consensus 1 sm~V~IVGaGpaGl~~A~~L~~~-G-----~~v~v~Er~~~ 35 (412)
T 4hb9_A 1 SMHVGIIGAGIGGTCLAHGLRKH-G-----IKVTIYERNSA 35 (412)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 38999999999999999999999 9 99999998764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.014 Score=54.14 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~ 82 (303)
-+++.|+|+|-+|.+++..|++. | . +|++++|++
T Consensus 154 gk~~lVlGaGG~g~aia~~L~~~-G-----a~~V~i~nR~~ 188 (315)
T 3tnl_A 154 GKKMTICGAGGAATAICIQAALD-G-----VKEISIFNRKD 188 (315)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSS
T ss_pred CCEEEEECCChHHHHHHHHHHHC-C-----CCEEEEEECCC
Confidence 47899999999999999999998 8 5 899999993
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0088 Score=56.13 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=34.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..+|+|+|+|.+|.+.+..+... | .+|++++|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~-G-----a~V~v~dr~~~r~~~ 205 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY 205 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999999999888 8 789999999876654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.016 Score=52.45 Aligned_cols=40 Identities=18% Similarity=0.015 Sum_probs=34.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+|+|.+|.+++..|++. |. .+|++++|++++.++
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~-G~----~~v~i~~R~~~~a~~ 159 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQA-GP----SELVIANRDMAKALA 159 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHT-CC----SEEEEECSCHHHHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 47999999999999999999998 81 389999999876654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.057 Score=49.45 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=31.8
Q ss_pred cceeccCCchhhhhhHHHHHhcc-CCC---CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 16 GLIHHTNGSLEERLDELRRLMGK-AEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
---||+.|---.|.--|+. ++. ... ...||.|||+|.+|+.++..|+.. |. ..++++|.+.
T Consensus 6 ~~~~~~~~~~y~r~i~L~~-~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~a-GV----G~i~lvD~D~ 70 (292)
T 3h8v_A 6 HHHHHSSGLVPRGSMALKR-MGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRC-GI----GKLLLFDYDK 70 (292)
T ss_dssp ---------------------------CGGGGCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred ccccccCCCCchHhhcccc-cChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 3345565555555544443 343 221 247999999999999999999999 83 5899999886
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0076 Score=53.44 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|||.|.|+|.+|+.++..|.+. | ++|+.++|+++..+
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 42 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ-G-----WRIIGTSRNPDQME 42 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG-T-----CEEEEEESCGGGHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHC-C-----CEEEEEEcChhhhh
Confidence 58999999999999999999999 8 89999999987553
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.05 Score=52.50 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=31.1
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||.|||+|.+|+.++..|+.. |. .+++++|.+.=
T Consensus 41 ~~VlvvG~GGlGs~va~~La~a-Gv----g~i~ivD~D~V 75 (434)
T 1tt5_B 41 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDTI 75 (434)
T ss_dssp CCEEEECSSTHHHHHHHHHHHT-TC----CCEEEEECCBC
T ss_pred CEEEEECcCHHHHHHHHHHHHc-CC----CEEEEEcCCEe
Confidence 6899999999999999999999 83 57999998763
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.017 Score=56.65 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=40.8
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+.-++.+++..++.- .-++++|+|+|.+|.++|..|+.. | .+|+++++++...
T Consensus 249 ~sl~dgi~r~tg~~L-~GKtVvVtGaGgIG~aiA~~Laa~-G-----A~Viv~D~~~~~a 301 (488)
T 3ond_A 249 HSLPDGLMRATDVMI-AGKVAVVAGYGDVGKGCAAALKQA-G-----ARVIVTEIDPICA 301 (488)
T ss_dssp HHHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred HHHHHHHHHHcCCcc-cCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHH
Confidence 444555666555422 237899999999999999999998 9 8999999987643
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.035 Score=51.29 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
.+++.|+|+|-+|.+++..|++. | . +|++++|+++
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~-G-----~~~v~v~nRt~~ 183 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIE-G-----IKEIKLFNRKDD 183 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSST
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CCEEEEEECCCc
Confidence 47899999999999999999998 8 5 8999999943
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.038 Score=55.48 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..||.|||+|.+|+.+|..|+.. |. ..++++|.+.-
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~a-GV----G~ItLvD~D~V 361 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGTV 361 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCBC
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCCC
Confidence 47999999999999999999998 83 58999999863
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0086 Score=50.68 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=33.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++..+
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~~ 38 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR-G-----HEVTAIVRNAGKIT 38 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCSHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhC-C-----CEEEEEEcCchhhh
Confidence 79999996 99999999999999 8 89999999987553
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0065 Score=50.81 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.|+|||||.-|.+.|..|+++ | ++|+++++.+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~~-G-----~~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA-G-----HQVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 499999999999999999999 9 89999998753
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.029 Score=52.42 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=27.5
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 158 ~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
+.++|+||+|+|.....+..+.+. .. +..+|+++.-+
T Consensus 66 ~~~vDvV~~a~g~~~s~~~a~~~~---~a---G~~VId~Sa~~ 102 (345)
T 2ozp_A 66 LEPADILVLALPHGVFAREFDRYS---AL---APVLVDLSADF 102 (345)
T ss_dssp CCCCSEEEECCCTTHHHHTHHHHH---TT---CSEEEECSSTT
T ss_pred hcCCCEEEEcCCcHHHHHHHHHHH---HC---CCEEEEcCccc
Confidence 578999999999998777666543 33 67788777544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0083 Score=55.78 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=32.1
Q ss_pred CCceEEEECCChH-HHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 42 DPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGaG~m-G~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..++++|||+|.| |..+|..|+.. | ..|++++|+..+
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~-g-----AtVtv~nR~~~~ 213 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLAND-G-----ATVYSVDVNNIQ 213 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTT-S-----CEEEEECSSEEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHHC-C-----CEEEEEeCchHH
Confidence 4589999999976 99999999988 7 789999998654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.018 Score=53.01 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=30.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~ 82 (303)
+|||+|+|+ |.+|+.++..|+.. |++. ...+|+++|+.+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEEEeCCC
Confidence 489999997 99999999999988 7320 012899999875
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.013 Score=53.05 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=34.1
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+|||.|.|+ |.+|+.++..|++. | ++|++++|+++..+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 51 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAA-G-----HDLVLIHRPSSQIQ 51 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSCGG
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEecChHhhh
Confidence 3479999997 99999999999998 8 89999999876543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.011 Score=50.39 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=33.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++..+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~~ 38 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR-G-----HEVLAVVRDPQKAA 38 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEEecccccc
Confidence 78999998 99999999999999 8 89999999986543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0067 Score=56.55 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=41.5
Q ss_pred ceeccCCchhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 17 LIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
-.+|+++.-... +++++.-.+.. .+|+|.|.|+ |.+|..++..|++. | ++|++++|++..
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 65 (379)
T 2c5a_A 5 TTNGTDYGAYTY-KELEREQYWPS-ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKNE 65 (379)
T ss_dssp ----------CC-TTCCCCCSCTT-SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCCS
T ss_pred ccCCcchhhhhH-HHHhccccccc-cCCeEEEECCccHHHHHHHHHHHHC-C-----CeEEEEECCCcc
Confidence 345666655544 66766655554 5689999999 99999999999998 8 899999998754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.054 Score=50.65 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=26.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~ 83 (303)
|+||+|+|+|.+|..++..+..+ . +.+|+ +.+++++
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~-~----~~evvaV~d~~~~ 38 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQ-D----DMEVIGVTKTKPD 38 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS-S----SEEEEEEEESSCS
T ss_pred ceEEEEECCCHHHHHHHHHHHhC-C----CceEEEEecCCHH
Confidence 36999999999999999998875 3 15544 4455443
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.02 Score=53.89 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.9
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
+||+|+| .|.+|..+...|.++ . ..+++.+...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p----~~elvai~~~ 50 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-P----HFQVTLMTAD 50 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-S----SEEEEEEBCS
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-C----CcEEEEEeCc
Confidence 7999999 699999999999876 4 1466665543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.026 Score=52.98 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=27.4
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
++.++|+||+|+|.....++.+.+ .. +..+|.+++-+-
T Consensus 77 ~~~~~DvVf~alg~~~s~~~~~~~----~~---G~~vIDlSa~~R 114 (352)
T 2nqt_A 77 VLGGHDAVFLALPHGHSAVLAQQL----SP---ETLIIDCGADFR 114 (352)
T ss_dssp HHTTCSEEEECCTTSCCHHHHHHS----CT---TSEEEECSSTTT
T ss_pred HhcCCCEEEECCCCcchHHHHHHH----hC---CCEEEEECCCcc
Confidence 466899999999998766666554 22 677887775543
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.033 Score=54.42 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.+||.|||+|.||++++..++++ .-+.. .+|++.|++...
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~-~dv~~-~~I~vaD~~~~~ 52 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEK-FDIKP-SQVTIIAAEGTK 52 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHH-BCCCG-GGEEEEESSCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-CCCce-eEEEEeccchhh
Confidence 48999999999999999999998 42211 268888877654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.017 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+|||.|.|+ |.+|..++..|++. | ++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-G-----NPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-T-----CCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 578999998 99999999999999 8 8999999987
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.045 Score=51.67 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=28.7
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|+||+|+|.....+..+++. .. ++.+|+++.-+
T Consensus 61 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vIDlSa~~ 98 (366)
T 3pwk_A 61 AFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYF 98 (366)
T ss_dssp TTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHhHHHHHHHHH---HC---CCEEEEcCCcc
Confidence 3578999999999887777776653 33 67888887654
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.011 Score=56.59 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 28 ~dViIIGgG~AGl~aA~~La~~-G-----~~V~llEk~~~ 61 (417)
T 3v76_A 28 QDVVIIGAGAAGMMCAIEAGKR-G-----RRVLVIDHARA 61 (417)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 6899999999999999999999 8 89999999874
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.023 Score=50.37 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=32.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||.|.|+ |.+|+.++..|++..| ++|++.+|++++.+
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-----~~V~~~~R~~~~~~ 39 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-----DHFHIGVRNVEKVP 39 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-----TTEEEEESSGGGSC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-----CcEEEEECCHHHHH
Confidence 78999997 9999999999887414 79999999987554
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.027 Score=50.60 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=29.6
Q ss_pred EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 149 ~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.+++|+++.+.++|+|+.|-.+..+++... +.|.. +.-+++.+-|
T Consensus 49 ~a~~d~d~lla~pD~VVe~A~~~av~e~~~---~iL~a---G~dvv~~S~g 93 (253)
T 1j5p_A 49 VVRLDEFQVPSDVSTVVECASPEAVKEYSL---QILKN---PVNYIIISTS 93 (253)
T ss_dssp SEECSSCCCCTTCCEEEECSCHHHHHHHHH---HHTTS---SSEEEECCGG
T ss_pred eeeCCHHHHhhCCCEEEECCCHHHHHHHHH---HHHHC---CCCEEEcChh
Confidence 355667666678899999987776655443 34554 5666666655
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.069 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.1
Q ss_pred CceEEEECCChHHHHHHHHHHH
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD 64 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~ 64 (303)
++||+|+|+|.||..++..+.+
T Consensus 10 ~irIgIIG~G~VG~~~~~~L~~ 31 (444)
T 3mtj_A 10 PIHVGLLGLGTVGGGTLTVLRR 31 (444)
T ss_dssp CEEEEEECCHHHHHHHHHHHHH
T ss_pred cccEEEECCCHHHHHHHHHHHH
Confidence 3689999999999999987764
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.017 Score=54.13 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~-G-----~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQS-G-----IDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence 347999999999999999999999 9 89999999874
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.018 Score=51.57 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=32.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||.|.|+ |.+|+.++..|.+. | |+|+...|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~-G-----~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR-G-----HEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCC
Confidence 89999998 99999999999999 9 99999999875
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.015 Score=51.57 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=33.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+|||.|.|+|.+|+.++..|.+. | ++|++++|+++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ-G-----HEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCccc
Confidence 47999999999999999999999 8 899999998764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.023 Score=49.01 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=34.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.|||.|.|+ |.+|..++..|++. | ++|++++|+++..+
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~~ 59 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNK-G-----HEPVAMVRNEEQGP 59 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CCeEEEECCCChHHHHHHHHHHhC-C-----CeEEEEECChHHHH
Confidence 489999998 99999999999999 8 89999999987654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.027 Score=48.48 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCe--eEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~~~~~ 86 (303)
|+|.|.|+ |.+|.+++..|++. | + +|++++|+++..+
T Consensus 19 ~~vlVtGasg~iG~~l~~~L~~~-G-----~~~~V~~~~r~~~~~~ 58 (242)
T 2bka_A 19 KSVFILGASGETGRVLLKEILEQ-G-----LFSKVTLIGRRKLTFD 58 (242)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH-T-----CCSEEEEEESSCCCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHcC-C-----CCCEEEEEEcCCCCcc
Confidence 78999996 99999999999999 8 7 9999999986543
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.061 Score=49.88 Aligned_cols=41 Identities=12% Similarity=0.102 Sum_probs=29.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhc-----CCCCCCeeE-EEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSY-----GYLRDKVLI-RIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~-----G~~~~~~~V-~l~~r~~~~~~ 86 (303)
++||+|||+|.||..++..+.+.. | .+.+| -++++++++.+
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g---~~~~vvaV~d~~~~~~~ 52 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLG---LKFNVVFVADSLHSYYN 52 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCSSS---EEEEEEEEECSSCEEEC
T ss_pred EEeEEEEecCHHHHHHHHHHHhChHHHhcC---CcEEEEEEEECChHHhh
Confidence 479999999999999999987751 1 00343 46677776543
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.02 Score=47.28 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++|+|||+|..|..+|..|++. | .+|+++++.+.
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~-g-----~~v~lie~~~~ 35 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARA-G-----LKVLVLDGGRS 35 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 36899999999999999999998 8 89999998764
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.021 Score=54.52 Aligned_cols=100 Identities=23% Similarity=0.234 Sum_probs=65.3
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC-------chhhhhhhhhHHHHHhhhhhHHHHhhhhcc
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-------RSVDRATAEHLFEVINSREDVLRRLIRRCA 112 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~-------~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 112 (303)
+-...||+|+|+|+-|.++|..+... |. .+|+++|++. +.+...+. .
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~-Ga----~~I~v~D~~Gli~~~R~~~L~~~k~---------------------~ 238 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAA-GA----TKVTVVDKFGIINEQEAAQLAPHHL---------------------D 238 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTEECCTTCCCSCCC------------------------C
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCCcccCCccccchHHHH---------------------H
Confidence 34468999999999999999999988 82 3999999974 11211100 0
Q ss_pred cchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCC
Q 022050 113 YLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVP 191 (303)
Q Consensus 113 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~ 191 (303)
+.... + ......+++++++++|++|=+..+. ..+++++.++ + +.
T Consensus 239 fa~~~---------------------~-------~~~~~~~L~eav~~ADV~IG~Sapgl~T~EmVk~Ma----~---~p 283 (398)
T 2a9f_A 239 IAKVT---------------------N-------REFKSGTLEDALEGADIFIGVSAPGVLKAEWISKMA----A---RP 283 (398)
T ss_dssp HHHHH---------------------S-------CTTCCCSCSHHHHTTCSEEECCSTTCCCHHHHHTSC----S---SC
T ss_pred Hhhcc---------------------C-------cccchhhHHHHhccCCEEEecCCCCCCCHHHHHhhC----C---CC
Confidence 00000 0 0001245788999999977665443 4677777644 4 68
Q ss_pred EEEEeeccC
Q 022050 192 VIISLAKGV 200 (303)
Q Consensus 192 iivs~~nGi 200 (303)
+|+.++|..
T Consensus 284 IIfalsNPt 292 (398)
T 2a9f_A 284 VIFAMANPI 292 (398)
T ss_dssp EEEECCSSS
T ss_pred EEEECCCCC
Confidence 999999875
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.021 Score=56.82 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=37.9
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...|-+.+.++.. ....|+|||+|..|.++|..|++. | .+|.++++..
T Consensus 18 ~~~r~~~~~~m~~----~~~DVvVIGgGi~G~~~A~~La~r-G-----~~V~LlE~~~ 65 (571)
T 2rgh_A 18 NKTRQDSIQKMQQ----EELDLLIIGGGITGAGVAVQAAAS-G-----IKTGLIEMQD 65 (571)
T ss_dssp HHHHHHHHHHHHH----SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred ccCHHHHHHhccc----CCCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 3456555655432 236799999999999999999999 9 8999999864
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.095 Score=48.93 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=26.5
Q ss_pred hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 158 ~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+.++|+||+|+|.....+..+... .. +..||++..-
T Consensus 75 ~~~vDvVf~atp~~~s~~~a~~~~---~a---G~~VId~s~~ 110 (350)
T 2ep5_A 75 HKDVDVVLSALPNELAESIELELV---KN---GKIVVSNASP 110 (350)
T ss_dssp GTTCSEEEECCCHHHHHHHHHHHH---HT---TCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEECCcc
Confidence 478999999999987776666543 33 6678887754
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.026 Score=51.08 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=33.6
Q ss_pred eccCCchhhhhhHHHHHhccC-----------CCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 19 HHTNGSLEERLDELRRLMGKA-----------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.-|+||...++--+++... .-..+++.|.|+ |-+|.++|..|++. | .+|++.+|+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~l~~k~vlVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~ 79 (293)
T 3rih_A 6 HHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARA-G-----ANVAVAARSPRELS 79 (293)
T ss_dssp ----------------------------CCTTCCTTCEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGGH
T ss_pred ccccchhhhhhcCCceeeeecCCCCcccccccCCCCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 677788888777744443321 111246778887 78999999999999 9 89999999987765
Q ss_pred h
Q 022050 87 R 87 (303)
Q Consensus 87 ~ 87 (303)
+
T Consensus 80 ~ 80 (293)
T 3rih_A 80 S 80 (293)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.24 Score=50.03 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.||+|||+|.+|+.++..|+.. |. ..++++|.+.=....
T Consensus 18 s~VlVVGaGGLGsevak~La~a-GV----G~ItlvD~D~Ve~SN 56 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLT-GF----SHIDLIDLDTIDVSN 56 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEECCBCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHHc-CC----CeEEEecCCEEChhh
Confidence 7899999999999999999999 93 589999988633333
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.017 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~-G-----~~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQH-D-----VDVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 5899999999999999999999 9 8999999876
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.076 Score=49.37 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.8
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~ 79 (303)
++||+|+| .|.+|..+...|..+ + + +..+++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~-~-~-p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER-E-F-PVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-T-C-CEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC-C-C-CCEEEEEEE
Confidence 58999999 799999999998876 3 1 114666554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.029 Score=51.64 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=33.4
Q ss_pred eccCCchhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||.-|++++--+.+..+ .+|||.|.|+ |.+|+.++..|.+..| ++|++++|+++...
T Consensus 6 ~~~~~~~~~~~~~~~~m------~~~~vlVtGatG~iG~~l~~~L~~~~g-----~~V~~~~r~~~~~~ 63 (372)
T 3slg_A 6 HHHMGTLEAQTQGPGSM------KAKKVLILGVNGFIGHHLSKRILETTD-----WEVFGMDMQTDRLG 63 (372)
T ss_dssp -----------------------CCCEEEEESCSSHHHHHHHHHHHHHSS-----CEEEEEESCCTTTG
T ss_pred cccccchhhhhcCCccc------CCCEEEEECCCChHHHHHHHHHHhCCC-----CEEEEEeCChhhhh
Confidence 56667776655555443 2589999996 9999999999988524 89999999886554
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.019 Score=49.04 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=34.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|||.|.|+ |.+|..++..|++. | ++|++++|+++..+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 42 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR-G-----FEVTAVVRHPEKIK 42 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT-T-----CEEEEECSCGGGCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC-C-----CEEEEEEcCcccch
Confidence 589999996 99999999999999 8 89999999987543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.029 Score=46.73 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~-g-----~~V~~~~r~~~~~ 40 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRL 40 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-C-----CeEEEEEeChhhc
Confidence 79999999 99999999999999 8 8999999987654
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.02 Score=52.23 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=30.9
Q ss_pred CceEEEECCChHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~ 82 (303)
|++|+|||+|..|.+.|..|++ . | ++|+++++++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~-G-----~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSG-P-----LYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-C-C-----EEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccC-C-----ceEEEEECCC
Confidence 4689999999999999999999 8 8 8999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.054 Score=49.86 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=32.0
Q ss_pred CCceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|||.|||.|.+|.+ +|..|.+. | ++|+++|+.+.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~-G-----~~V~~~D~~~~ 39 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEA-G-----FEVSGCDAKMY 39 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEcCCCC
Confidence 4689999999999995 99999998 9 99999999763
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.04 Score=51.34 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.8
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
++||+|||+|.||..++..+.++
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~ 25 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLER 25 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC
Confidence 47999999999999999998775
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.021 Score=48.66 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||.|.|+ |.+|..++..|++. | ++|++++|+++..+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT-D-----YQIYAGARKVEQVP 38 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS-S-----CEEEEEESSGGGSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCccchh
Confidence 79999995 99999999999998 8 89999999986543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.059 Score=47.38 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=32.2
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...++|.|||+|.+|..-+..|.+. | .+|++++++.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~-G-----A~VtVvap~~ 64 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQE-G-----AAITVVAPTV 64 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGG-C-----CCEEEECSSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCC
Confidence 3458999999999999999999998 8 8999999865
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.051 Score=51.12 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=29.4
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|+||+|+|.....+..+++. .. ++.+|.++.-+
T Consensus 76 ~~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpl_A 76 LMDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp GCTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 3578999999999998877777653 33 67888887654
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.051 Score=51.12 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=29.4
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|+||+|+|.....+..+++. .. ++.+|.++.-+
T Consensus 76 ~~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpk_A 76 LMDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp GCTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 3578999999999998877777653 33 67888887654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.027 Score=50.44 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=31.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|.|.|+ |.+|..++..|.+. | ++|++++|++.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~ 39 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEV 39 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CcEEEEECCCc
Confidence 588999997 99999999999998 8 89999999853
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.03 Score=52.35 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=32.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 60 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQN-G-----IDVSVYERDND 60 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 46899999999999999999998 8 89999998764
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.037 Score=50.43 Aligned_cols=48 Identities=17% Similarity=0.136 Sum_probs=38.6
Q ss_pred hhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++++....|.+. +|||.|.|+ |.+|+.++..|.+. | ++|++++|+...
T Consensus 13 ~~~~~~~~~~~~---~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 61 (351)
T 3ruf_A 13 RYEEITQQLIFS---PKTWLITGVAGFIGSNLLEKLLKL-N-----QVVIGLDNFSTG 61 (351)
T ss_dssp HHHHHHHHHHHS---CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSSC
T ss_pred HHhhHHhhCCCC---CCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCCC
Confidence 445555555543 489999997 99999999999998 8 899999997653
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.033 Score=50.97 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=31.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+|||.|.|+ |.+|..++..|.+. | ++|++++|++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA-H-----RPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT-T-----CCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 478999999 99999999999998 8 8999999987
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.14 Score=50.66 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=41.3
Q ss_pred hhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+|.+.-.++++..... ..||.|||+|.+|+.+|..|+.. |. ..++++|.+.=...
T Consensus 13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~a-GV----g~itlvD~D~Ve~s 70 (531)
T 1tt5_A 13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQVSGE 70 (531)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECCCBBCHH
T ss_pred HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCEechh
Confidence 4666555566654422 36899999999999999999999 93 58999998863333
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=52.14 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=33.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..||+|||+|.+|+.++..|+.. |. .+++++|.+.=....+
T Consensus 411 ~~~vlvvG~GglG~~~~~~L~~~-Gv----g~i~l~D~d~v~~snl 451 (805)
T 2nvu_B 411 TCKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDTIDVSNL 451 (805)
T ss_dssp TCCEEEECCSSHHHHHHHHHHTT-TC----CEEEEEECCBCCGGGG
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CcEEEECCCeeccccc
Confidence 36899999999999999999998 83 5899999986433333
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.028 Score=51.69 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
....|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~-G-----~~V~llE~~~ 50 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 50 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCC
Confidence 346899999999999999999999 8 8999999864
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.04 Score=50.59 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~-G-----~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeccC
Confidence 36899999999999999999999 8 8999999853
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.076 Score=51.49 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=61.9
Q ss_pred CceEEEECCC----hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGAG----AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGaG----~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+++|+|||++ .+|..+...|.+. | ...|..+++....+ .
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~-g----~~~v~pVnP~~~~i-----------------------------~--- 50 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEY-K----KGKVYPVNIKEEEV-----------------------------Q--- 50 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTC-C----SSEEEEECSSCSEE-----------------------------T---
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHc-C----CCEEEEECCCCCeE-----------------------------C---
Confidence 5889999998 8899999998765 4 15666666553211 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.+.+..++.++.+..|+++++||+....++++++... . -..++.++.
T Consensus 51 ----------------------------G~~~y~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~-G----i~~vv~~s~ 97 (457)
T 2csu_A 51 ----------------------------GVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIITA 97 (457)
T ss_dssp ----------------------------TEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECCC
T ss_pred ----------------------------CEeccCCHHHcCCCCCEEEEecCHHHHHHHHHHHHHc-C----CCEEEEecC
Confidence 1223334445445789999999999999999887653 2 235677888
Q ss_pred cCc
Q 022050 199 GVE 201 (303)
Q Consensus 199 Gi~ 201 (303)
|+.
T Consensus 98 G~~ 100 (457)
T 2csu_A 98 GFG 100 (457)
T ss_dssp SST
T ss_pred CCC
Confidence 885
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.032 Score=52.43 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|+|||+|..|.+.|..|++. | .+|+++++++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARN-G-----HEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 6899999999999999999999 9 8999999864
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.034 Score=51.53 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=35.4
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+--|=+.|.+.|....-.+|+|.|.|+ |.+|..++..|++. | .++|++++|++..
T Consensus 14 ~~~~~~~m~~~~~~~~~~~~~ilVtGatG~iG~~l~~~L~~~-g----~~~V~~~~r~~~~ 69 (377)
T 2q1s_A 14 LVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLEL-G----VNQVHVVDNLLSA 69 (377)
T ss_dssp ------------CCGGGTTCEEEEETTTSHHHHHHHHHHHHT-T----CSEEEEECCCTTC
T ss_pred cccccccCCCCCChHHhCCCEEEEECCccHHHHHHHHHHHHc-C----CceEEEEECCCCC
Confidence 344555666666655556689999997 99999999999988 6 1689999997643
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.12 Score=48.40 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=29.0
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+.++|+||+|+|.....+..+++. +. ++.+|+++.-+
T Consensus 60 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vID~Sa~~ 97 (344)
T 3tz6_A 60 DPSGLDIALFSAGSAMSKVQAPRFA---AA---GVTVIDNSSAW 97 (344)
T ss_dssp CCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhccCCEEEECCChHHHHHHHHHHH---hC---CCEEEECCCcc
Confidence 3578999999999988777777654 33 67888887654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.029 Score=54.72 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.++|.|||+|..|.++|..|++. | .+|+++++.+..
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~~ 46 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLA-G-----VEVVVLERLVER 46 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCCC-
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCCC
Confidence 36799999999999999999999 9 899999987653
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.034 Score=50.82 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=30.0
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|||+|.-|++.|..|++. | ++|+++++.++
T Consensus 7 ViIVGaGpaGl~~A~~La~~-G-----~~V~v~Er~~~ 38 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAAKY-G-----LKTLMIEKRPE 38 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 99999999999999999999 9 99999998764
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.04 Score=48.91 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.+++..|++. | ++|++.+|+++.++.
T Consensus 33 k~vlVTGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 71 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIEE 71 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECChHHHHH
Confidence 67899987 89999999999999 9 899999998866543
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.03 Score=54.81 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++||+|||+|.-|...|..|.+. + ++|+|+++++.
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~-~-----~~VtLId~~~~ 76 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTK-K-----YNVSIISPRSY 76 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTT-T-----CEEEEEESSSE
T ss_pred CCCCEEEECCcHHHHHHHHHhhhC-C-----CcEEEECCCCC
Confidence 457999999999999999999887 6 89999999864
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.048 Score=49.61 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|.|.|+ |.+|..++..|++. | ++|++++|+..
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNFFT 62 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 4589999998 99999999999998 8 89999998754
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.095 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred CceEEEECCChHHHHHHHHHHHh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
++||+|+|+|.||+.++..+.++
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~ 26 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDAS 26 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCcHHHHHHHHHHHhc
Confidence 47899999999999999999763
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.07 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
.++||+|||+|.||..++..+.+.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCHHHHHHHHHHHhc
Confidence 358999999999999999999875
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.041 Score=51.44 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|+|||+|..|.+.|..|+++ | ++|++++++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKA-G-----HEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CceEEEeCCC
Confidence 6899999999999999999999 9 8999998864
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.045 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.+.|..|++. | .+|+++++.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~-G-----~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 6899999999999999999999 8 8999999864
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.045 Score=51.30 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=31.3
Q ss_pred CceEEEECCChHHHHHHHHHHH---hcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~~ 83 (303)
|++|+|||+|..|.+.|..|++ . | ++|+++++++.
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~-g-----~~V~vie~~~~ 38 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGS-K-----ADVKVINKSRF 38 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGG-G-----SEEEEEESSSE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCC-C-----CeEEEEeCCCC
Confidence 4789999999999999999999 7 7 89999998874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.078 Score=48.15 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=28.9
Q ss_pred CCceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.-++++|||+|. +|..+|..|... | ..|+++++.
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~-g-----AtVtv~~~~ 183 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNR-N-----YTVSVCHSK 183 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 348999999985 899999999998 8 789988754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.054 Score=48.13 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~-G-----~~Vi~~~r~~~~~~~ 69 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHAD-G-----LGVVIADLAAEKGKA 69 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCChHHHHH
Confidence 67889998 89999999999999 9 899999999876654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.058 Score=51.94 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=31.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||.|||.|..|.+.|..|++. | ++|+++|+++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~-G-----~~V~~~D~~~~ 43 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKL-G-----AIVTVNDGKPF 43 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHT-T-----CEEEEEESSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEeCCcc
Confidence 47999999999999999999998 9 99999999763
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.13 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.4
Q ss_pred CceEEEEC-CChHHHHHHHHHHHh
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDS 65 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~ 65 (303)
+|||+|+| .|.+|..+...|.++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~ 29 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDER 29 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC
Confidence 37999999 599999999999865
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.11 Score=47.49 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=28.5
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||+|. +|..+|..|+.. | ..|++..+.
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~-g-----AtVtv~h~~ 193 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNA-G-----ATVSVCHIK 193 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 38999999987 699999999998 7 789988754
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.048 Score=49.44 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAG-G-----HEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 6899999999999999999999 9 8999999974
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.031 Score=55.89 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|||+|..|.+.|..|++. | .+|+++++.+
T Consensus 24 ~DVvIVGgG~AGl~aA~~Lar~-G-----~~V~LiEr~~ 56 (591)
T 3i3l_A 24 SKVAIIGGGPAGSVAGLTLHKL-G-----HDVTIYERSA 56 (591)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHcC-C-----CCEEEEcCCC
Confidence 6899999999999999999999 8 8999999874
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.99 E-value=0.086 Score=47.54 Aligned_cols=65 Identities=18% Similarity=0.010 Sum_probs=43.7
Q ss_pred cCcceeccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|-++.+|-+..--...|++. +. .-..+++.|+|+|.+|.++|..|++. | +|++++|+++++++
T Consensus 101 ~~g~l~g~nTd~~G~~~~L~~~-~~-~l~~k~vlV~GaGgiG~aia~~L~~~-G------~V~v~~r~~~~~~~ 165 (287)
T 1nvt_A 101 EDGKAIGYNTDGIGARMALEEE-IG-RVKDKNIVIYGAGGAARAVAFELAKD-N------NIIIANRTVEKAEA 165 (287)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-HC-CCCSCEEEEECCSHHHHHHHHHHTSS-S------EEEEECSSHHHHHH
T ss_pred eCCEEEEecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHC-C------CEEEEECCHHHHHH
Confidence 3565555554444434444432 11 12347899999999999999999877 4 79999999876654
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.057 Score=50.37 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 37899999999999999999999 8 89999998765
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.034 Score=53.37 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|++|+|||+|--|.+-|..|+++ | ++|+++.++.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~-G-----~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA-G-----IPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT-T-----CCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEccCC
Confidence 68999999999999999999999 9 8999998754
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.081 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.6
Q ss_pred ceEEEECCChHHHHHHHHHHHh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~ 65 (303)
+||+|+|+|.+|..+++.+..+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~ 25 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS 25 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcC
Confidence 6999999999999999999876
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.041 Score=49.33 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARA-E-----IKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence 357999999999999999999999 8 8999999854
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.27 Score=52.33 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=40.2
Q ss_pred hhhhhHHHHHhccCCC---CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 26 EERLDELRRLMGKAEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~---~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.+.-.++++.... ...||+|+|+|.+|+.+|..|+.. |. ..++++|.+.=...
T Consensus 7 ~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~a-GV----g~itlvD~D~V~~s 65 (1015)
T 3cmm_A 7 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLA-GV----KSMTVFDPEPVQLA 65 (1015)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHH-CC----SEEEEECCSBCCGG
T ss_pred hHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHc-CC----CeEEEecCCEechh
Confidence 3444443444444332 247899999999999999999999 93 58999998753333
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.062 Score=49.52 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=31.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
|+|.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 60 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEK-G-----YEVHGIVRRSSS 60 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred cEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCccc
Confidence 68999996 99999999999998 8 899999998653
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.062 Score=52.89 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.5
Q ss_pred CCceEEEECCChHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++ . | .+|+++++.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQG-T-----ADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTT-S-----SEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCC-C-----CcEEEEeCCC
Confidence 34789999999999999999999 7 7 8999999864
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.095 Score=47.88 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=29.0
Q ss_pred CCceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..++++|||+|. +|..+|..|... | ..|+++++.
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs~ 192 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHRF 192 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECSS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 348999999996 599999999988 7 789988654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.053 Score=48.41 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=32.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.++
T Consensus 30 k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~ 67 (276)
T 2b4q_A 30 RIALVTGGSRGIGQMIAQGLLEA-G-----ARVFICARDAEACA 67 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 67899997 89999999999999 9 89999999986554
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.12 Score=47.03 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.1
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||+|. +|..+|..|... | ..|++..+.
T Consensus 161 Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs~ 194 (285)
T 3l07_A 161 GAYAVVVGASNVVGKPVSQLLLNA-K-----ATVTTCHRF 194 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37999999987 799999999988 7 788888653
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.043 Score=50.25 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~-G-----~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA-G-----LNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5799999999999999999999 8 8999999865
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.088 Score=46.59 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=33.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+.
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~-G-----~~V~~~~r~~~~~~~ 70 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLEE 70 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEEcCHHHHHH
Confidence 378999987 89999999999999 9 899999999865543
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.051 Score=50.01 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~-G-----~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKR-G-----EEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5799999999999999999999 8 8999999874
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.065 Score=49.58 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQN-G-----WDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEecCCC
Confidence 36899999999999999999999 8 89999998764
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.14 Score=47.13 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=28.9
Q ss_pred CCceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..++++|||+|. +|..+|..|... | ..|+++++.
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs~ 198 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHSK 198 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhC-C-----CeEEEEECC
Confidence 348999999996 799999999988 7 789988643
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.069 Score=46.85 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=30.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 35 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRA-R-----KNILLVDAGE 35 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred CCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 6899999999999999999998 8 8999999754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.098 Score=48.05 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=28.9
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||+|. +|..+|..|... | ..|+++++.
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~~~~ 198 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKE-N-----ATVTIVHSG 198 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37999999877 799999999998 8 789999874
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.073 Score=50.14 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (303)
..|+|||+|..|.+.|..|++. | . +|+++++++.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~-G-----~~~V~vlE~~~~ 41 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARR-G-----YTNVTVLDPYPV 41 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSCS
T ss_pred CCEEEECCCHHHHHHHHHHHHc-C-----CCcEEEEeCCCC
Confidence 5799999999999999999999 9 8 8999998753
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.084 Score=51.37 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=32.8
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
...++|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liEk~~~ 126 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALL-G-----ARVVLVEKRIK 126 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCSS
T ss_pred cCCCCEEEECccHHHHHHHHHHHHC-C-----CeEEEEEeccc
Confidence 3457999999999999999999998 8 89999998753
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.054 Score=50.53 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|||+|..|.+.|..|++. | .+|+++++++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~-G-----~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKS-G-----FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 6899999999999999999999 8 8999999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.096 Score=50.63 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=30.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe---eEEEEe----cC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWR----RP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~---~V~l~~----r~ 81 (303)
..||+|+|||..|.+++..|... | . +|++++ |+
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~-G-----~~~~~I~vvd~~~~R~ 225 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEA-G-----VKPENVRVVELVNGKP 225 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-T-----CCGGGEEEEEEETTEE
T ss_pred CCEEEEECccHHHHHHHHHHHHc-C-----CCcCeEEEEEccCCCc
Confidence 37899999999999999999998 8 5 799999 87
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.065 Score=49.73 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|+|||+|..|.+.|..|++. | .+|+++++.+
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAER-G-----HRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5799999999999999999999 9 8999999875
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.1 Score=47.14 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=34.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 31 gk~vlVTGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 70 (301)
T 3tjr_A 31 GRAAVVTGGASGIGLATATEFARR-G-----ARLVLSDVDQPALEQ 70 (301)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 367999998 78999999999999 9 899999999876654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.075 Score=47.13 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
+++|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY-M-----LKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence 36899999999999999999998 8 899999986
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.16 Score=47.72 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=60.2
Q ss_pred CCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 41 ~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.-|.||+|+|+ |..|.-+.+.|..+ . ..++..+.... +..+ . +.+ ..+.+.
T Consensus 11 ~~~~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~-~aG~----~----~~~-------------~~p~~~- 62 (351)
T 1vkn_A 11 HHMIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRT-YAGK----K----LEE-------------IFPSTL- 62 (351)
T ss_dssp -CCEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECST-TTTS----B----HHH-------------HCGGGC-
T ss_pred cceeEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcc-cccC----C----hHH-------------hChhhc-
Confidence 34679999998 99999999999976 3 25666655322 1110 0 000 011110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEe-cCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
. .+.+. .|.++...++|++|+|+|...-.++.+++ . ++.||++++
T Consensus 63 --~------------------------~l~~~~~~~~~~~~~~Dvvf~alp~~~s~~~~~~~-----~---g~~VIDlSs 108 (351)
T 1vkn_A 63 --E------------------------NSILSEFDPEKVSKNCDVLFTALPAGASYDLVREL-----K---GVKIIDLGA 108 (351)
T ss_dssp --C------------------------CCBCBCCCHHHHHHHCSEEEECCSTTHHHHHHTTC-----C---SCEEEESSS
T ss_pred --c------------------------CceEEeCCHHHhhcCCCEEEECCCcHHHHHHHHHh-----C---CCEEEECCh
Confidence 0 11111 24444336899999999999877777665 3 688998886
Q ss_pred cC
Q 022050 199 GV 200 (303)
Q Consensus 199 Gi 200 (303)
-+
T Consensus 109 df 110 (351)
T 1vkn_A 109 DF 110 (351)
T ss_dssp TT
T ss_pred hh
Confidence 54
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.079 Score=45.62 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
|++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 38 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARA-G-----HTVIGIDRGQADI 38 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSSSE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhC-C-----CEEEEEeCChhHc
Confidence 357999998 99999999999999 8 8999999987643
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.082 Score=47.15 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=32.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
|||.|.|+ |.+|+.++..|++. | ++|++++|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 37 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL-G-----YEVVVVDNLSSGR 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECCCSSCC
T ss_pred CEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCCCc
Confidence 78999999 99999999999999 8 8999999987643
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.066 Score=49.77 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=32.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ-G-----HRVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 36899999999999999999999 8 89999998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.068 Score=48.54 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|+|.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~~ 55 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQ-G-----RTVRGFDLRPSG 55 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEESSCCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCCC
Confidence 4589999999 99999999999999 8 899999998753
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.41 E-value=0.16 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.2
Q ss_pred ceEEEECCChHHHHHHHHHHHh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~ 65 (303)
+||+|+|+|.+|..+++.+..+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~ 25 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS 25 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC
T ss_pred eEEEEECcCHHHHHHHHHHhCC
Confidence 5999999999999999998865
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.086 Score=50.18 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~ 82 (303)
.++|+|||+|..|.+.|..|++. | . +|+++++.+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~-G-----~~~~V~v~E~~~ 41 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAE-K-----AFDQVTLFERRG 41 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CCSEEEEECSSS
T ss_pred CCEEEEECccHHHHHHHHHHHhc-C-----CCCCeEEEecCC
Confidence 47899999999999999999998 8 7 999999875
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.081 Score=47.14 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=32.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|||.|.|+ |.+|+.++..|++. | ++|++.+|++.
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 42 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVAS-G-----EEVTVLDDLRV 42 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEECCCSS
T ss_pred CCeEEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCCc
Confidence 589999999 99999999999999 8 89999999875
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.17 Score=49.32 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=33.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+|||.|.|+ |.+|+.++..|.+. | ++|++++|++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~-G-----~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG-G-----HEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCC
Confidence 799999996 99999999999999 8 899999998764
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.069 Score=51.03 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~-G-----~~V~llEk~~~ 60 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 60 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5799999999999999999998 8 89999998763
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.13 Score=50.51 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|+|+|-+|.+++..|++. | .+|++++|+.+++++
T Consensus 365 k~vlV~GaGGig~aia~~L~~~-G-----~~V~i~~R~~~~a~~ 402 (523)
T 2o7s_A 365 KTVVVIGAGGAGKALAYGAKEK-G-----AKVVIANRTYERALE 402 (523)
T ss_dssp -CEEEECCSHHHHHHHHHHHHH-C-----C-CEEEESSHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 5799999999999999999999 9 789999999876543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.2 Score=47.03 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=37.0
Q ss_pred hhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++++-+-.+..+-.-++|+|+|.|++|...|..+... | ..|+++|++++
T Consensus 161 ~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~-G-----akVvvsD~~~~ 209 (355)
T 1c1d_A 161 MKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEA-G-----AQLLVADTDTE 209 (355)
T ss_dssp HHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred HHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 3443333454233448999999999999999999988 8 78999988754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.11 Score=46.77 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=32.6
Q ss_pred CceEEEECCC---hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG---~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+++.|.|++ .+|.++|..|++. | .+|.+.+|+++..+
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~-G-----~~V~~~~r~~~~~~ 70 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQ-G-----AEVALTYLSETFKK 70 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 3679999996 8999999999999 9 89999999975433
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.36 Score=45.37 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=29.3
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCC--EEEEeeccC
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP--VIISLAKGV 200 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~--iivs~~nGi 200 (303)
+.++ +.++|+||+|+|.....+..+.+.. . +. +||++..-+
T Consensus 59 ~~~~-~~~~DvVf~a~g~~~s~~~a~~~~~---~---G~k~vVID~ss~~ 101 (367)
T 1t4b_A 59 DLEA-LKALDIIVTCQGGDYTNEIYPKLRE---S---GWQGYWIDAASSL 101 (367)
T ss_dssp CHHH-HHTCSEEEECSCHHHHHHHHHHHHH---T---TCCCEEEECSSTT
T ss_pred ChHH-hcCCCEEEECCCchhHHHHHHHHHH---C---CCCEEEEcCChhh
Confidence 4444 5689999999998877777776543 2 43 788877654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.16 Score=46.36 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=28.0
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++++|||.|. +|..+|..|+.. | ..|++..+.
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~-g-----AtVtv~hs~ 194 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLG-G-----CTVTVTHRF 194 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37999999876 899999999988 7 789887653
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.087 Score=49.44 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~-g-----~~v~v~E~~~~ 37 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 37 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence 7999999999999999999998 8 89999998764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.072 Score=50.61 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe--eEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~--~V~l~~r~~ 82 (303)
+++|+|||+|..|.+.|..|++. | + +|+++.+++
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~-G-----~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRA-P-----CPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTS-S-----SCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhC-C-----CCCcEEEEeCCC
Confidence 36899999999999999999998 8 7 999998743
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.089 Score=49.27 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCee-EEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (303)
++|+|||+|..|.+.|..|++. | .+ |+++++.+.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~-G-----~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQA-G-----IGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCCC
Confidence 6899999999999999999999 8 88 999998764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.13 Score=45.12 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..+++.|.|+ |-+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~-G-----~~V~~~~r~~~~~~~ 47 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG-G-----AEVLLTGRNESNIAR 47 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 3468899997 88999999999999 9 899999999876654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=93.11 E-value=0.074 Score=49.26 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 4799999999999999999999 9 89999998774
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=1.9 Score=38.48 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=66.6
Q ss_pred cceeccCCchhhh-hhHHHHHhccCCC-CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhH
Q 022050 16 GLIHHTNGSLEER-LDELRRLMGKAEG-DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93 (303)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l 93 (303)
++....+.++++. ...++.++..... ...+|.-||||. |. ++..+++..| .+|+.+|.+++.++..++.
T Consensus 62 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~-G~-~~~~la~~~~-----~~v~gvD~s~~~~~~a~~~-- 132 (318)
T 2fk8_A 62 AYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW-GT-TMRRAVERFD-----VNVIGLTLSKNQHARCEQV-- 132 (318)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTT-SH-HHHHHHHHHC-----CEEEEEESCHHHHHHHHHH--
T ss_pred eeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccc-hH-HHHHHHHHCC-----CEEEEEECCHHHHHHHHHH--
Confidence 4443344455332 2333445554442 347999999998 43 3445554325 6899999998876543211
Q ss_pred HHHHhhhhhHHHHhhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEe-----
Q 022050 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVING----- 167 (303)
Q Consensus 94 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~d~~~a~~~aDlVIia----- 167 (303)
... . .+. .++.+ ..|..+.-...|+|+..
T Consensus 133 ---~~~----------~--~~~------------------------------~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 133 ---LAS----------I--DTN------------------------------RSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp ---HHT----------S--CCS------------------------------SCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred ---HHh----------c--CCC------------------------------CceEEEECChHHCCCCcCEEEEeChHHh
Confidence 000 0 000 01222 23333322468999987
Q ss_pred cCchhHHHHHHHHHHHhhc
Q 022050 168 LPSTETKEVFEEISRYWKE 186 (303)
Q Consensus 168 Vp~~~~~~vl~~l~~~l~~ 186 (303)
++......+++++.+.+++
T Consensus 168 ~~~~~~~~~l~~~~~~Lkp 186 (318)
T 2fk8_A 168 FGHENYDDFFKRCFNIMPA 186 (318)
T ss_dssp TCGGGHHHHHHHHHHHSCT
T ss_pred cCHHHHHHHHHHHHHhcCC
Confidence 6666778899999999998
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.12 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.++|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~-G-----~~V~liE~~~ 76 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAM-G-----GRQLIVDRWP 76 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 47899999999999999999998 8 8999999986
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.085 Score=50.50 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=31.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.++|+|||+|..|.+.|..|++. | ++|+++.+..
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~-g-----~~v~v~E~~~ 44 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKA-G-----YKVTVLEART 44 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 47999999999999999999998 8 8999998764
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.087 Score=48.03 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCC-CCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~-~~~~~V~l~~r~~ 82 (303)
|.|+|||+|..|.+.|..|+++ |.. .++.+|+++++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence 6899999999999999999998 500 0015899999874
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.06 Score=52.57 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=32.3
Q ss_pred ccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|...|-+|.+++|. ....|.|||+|..|.+.|..|+++ | ++|.++++++
T Consensus 5 ~~~~~~~~~~~~~~--------~~~dv~iiG~G~~g~~~a~~l~~~-g-----~~v~~~e~~~ 53 (475)
T 3p1w_A 5 HHHSSGRENLYFQG--------EHYDVIILGTGLKECILSGLLSHY-G-----KKILVLDRNP 53 (475)
T ss_dssp ------------CC--------CEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cccccccccccccc--------ccCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeccC
Confidence 33344466666542 236899999999999999999999 9 8999999986
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.071 Score=52.45 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~-G-----~~V~vlEr~~~ 60 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHR-Q-----VGHLVVEQTDG 60 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 6899999999999999999999 9 89999998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.36 Score=44.21 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|..||||..|.+ +..+++..| ..|+.+|.+++.++..++. +.. .+ +.
T Consensus 122 ~g~rVLDIGcG~G~~t-a~~lA~~~g-----a~V~gIDis~~~l~~Ar~~-----~~~----------~g--l~------ 172 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLT-GILLSHVYG-----MRVNVVEIEPDIAELSRKV-----IEG----------LG--VD------ 172 (298)
T ss_dssp TTCEEEEECCCSSCHH-HHHHHHTTC-----CEEEEEESSHHHHHHHHHH-----HHH----------HT--CC------
T ss_pred CcCEEEEECCCccHHH-HHHHHHccC-----CEEEEEECCHHHHHHHHHH-----HHh----------cC--CC------
Confidence 3489999999986533 222344225 6899999999877653311 000 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEe-cCHHHH-hcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEE-EEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVV-TNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVI-ISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~d~~~a-~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~ii-vs~~n 198 (303)
++++. .|..+. -...|+|+++.-.....++++++.+.+++ +..+ +....
T Consensus 173 -------------------------~v~~v~gDa~~l~d~~FDvV~~~a~~~d~~~~l~el~r~LkP---GG~Lvv~~~~ 224 (298)
T 3fpf_A 173 -------------------------GVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYVDT---ETRIIYRTYT 224 (298)
T ss_dssp -------------------------SEEEEESCGGGGGGCCCSEEEECTTCSCHHHHHHHHHHHCCT---TCEEEEEECC
T ss_pred -------------------------CeEEEECchhhCCCCCcCEEEECCCccCHHHHHHHHHHHcCC---CcEEEEEcCc
Confidence 22221 222221 24689999876555677899999999998 4544 44433
Q ss_pred c
Q 022050 199 G 199 (303)
Q Consensus 199 G 199 (303)
|
T Consensus 225 ~ 225 (298)
T 3fpf_A 225 G 225 (298)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.079 Score=46.87 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=32.5
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.++.+..+..|.+.. +++.|.|+ |-+|.++|..|++. | ++|++.+|+++..
T Consensus 13 ~~~~~~~~~~m~l~~---k~vlVTGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~ 64 (260)
T 3gem_A 13 GRENLYFQGHMTLSS---APILITGASQRVGLHCALRLLEH-G-----HRVIISYRTEHAS 64 (260)
T ss_dssp --------------C---CCEEESSTTSHHHHHHHHHHHHT-T-----CCEEEEESSCCHH
T ss_pred cccCcccccCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCChHHH
Confidence 555555555565543 67889997 88999999999999 9 8999999998654
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.11 Score=43.32 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.1
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|||.|.|+ |.+|.+++..|+ . | ++|++.+|+++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~-g-----~~V~~~~r~~~ 37 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-K-K-----AEVITAGRHSG 37 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-T-T-----SEEEEEESSSS
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-C-C-----CeEEEEecCcc
Confidence 3479999998 899999999999 8 8 89999999864
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.09 Score=47.23 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=30.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
..+|+|||+|.-|.+.|..|++. | ++|+++++.
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA-Q-----LSTLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-C-----CcEEEEeCC
Confidence 36899999999999999999998 8 899999987
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=0.16 Score=48.64 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g-----~~v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCC
Confidence 357899999999999999999999 8 8999998764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.081 Score=47.55 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|.|.|+ |.+|..++..|++. | ++|++.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF-S-----HPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 3588999997 99999999999998 8 8999999986
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.097 Score=50.94 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=33.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..++|.|||+|..|.++|..|++. | .+|+++++.+..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~~ 47 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLG-G-----VDVMVLEQLPQR 47 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCCC
Confidence 347899999999999999999999 9 899999987653
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.92 E-value=0.11 Score=46.76 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=32.4
Q ss_pred cCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 38 KAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 38 ~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+.....|||.|.|+ |.+|..++..|++. | ++|++++|+++.
T Consensus 9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 50 (335)
T 1rpn_A 9 HHGSMTRSALVTGITGQDGAYLAKLLLEK-G-----YRVHGLVARRSS 50 (335)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred cccccCCeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCCCcc
Confidence 34456799999998 99999999999998 8 899999998754
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.11 Score=46.60 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=31.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
||||.|.|+ |.+|..++..|++. | ++|++++|+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 36 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDE-G-----LSVVVVDNLQT 36 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCc
Confidence 589999986 99999999999998 8 89999998764
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.091 Score=47.87 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=30.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~ 82 (303)
++|+|||+|..|.+.|..|++. | + +|+++++++
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~-g-----~~~v~lie~~~ 38 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDF-G-----ITDVIILEKGT 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHc-C-----CCcEEEEecCC
Confidence 6899999999999999999998 8 8 899999875
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.14 Score=45.92 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 29 k~~lVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 67 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALAAD-G-----VTVGALGRTRTEVEE 67 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 67889987 78999999999999 9 899999999876654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.16 Score=45.29 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=30.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec-CCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR-PGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r-~~~~~~ 86 (303)
.+++.|.|+ |-+|.++|..|++. | .+|.+.++ +++.++
T Consensus 29 ~k~~lVTGas~GIG~aia~~la~~-G-----~~V~~~~~~~~~~~~ 68 (280)
T 4da9_A 29 RPVAIVTGGRRGIGLGIARALAAS-G-----FDIAITGIGDAEGVA 68 (280)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCCHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC-C-----CeEEEEeCCCHHHHH
Confidence 366888887 88999999999999 9 89999986 544443
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.13 Score=45.95 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |-+|.++|..|++. | ++|++.+|+++.+++
T Consensus 28 k~vlVTGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~~~~ 66 (277)
T 4dqx_A 28 RVCIVTGGGSGIGRATAELFAKN-G-----AYVVVADVNEDAAVR 66 (277)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 67888887 89999999999999 9 899999999876543
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.063 Score=49.01 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=30.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+.|+|||+|..|.+.|..|+ . | .+|+++++++
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~-G-----~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-A-H-----GRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-T-T-----SCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-C-C-----CCEEEEECCC
Confidence 468999999999999999999 7 8 8999999874
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.74 E-value=0.084 Score=46.98 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=32.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|||.|.|+ |.+|..++..|++. | ++|++.+|+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 39 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVREST 39 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CCEEEEECCcc
Confidence 578999998 99999999999998 8 89999999864
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.73 E-value=0.11 Score=46.16 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=32.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
++|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 45 k~vlITGasggIG~~la~~L~~~-G-----~~V~~~~r~~~~~~ 82 (285)
T 2c07_A 45 KVALVTGAGRGIGREIAKMLAKS-V-----SHVICISRTQKSCD 82 (285)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT-S-----SEEEEEESSHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-C-----CEEEEEcCCHHHHH
Confidence 57899987 89999999999998 8 89999998876554
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.1 Score=46.17 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEE-EecC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRP 81 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~ 81 (303)
.+++|+|||+|.-|.+.|..|++. | ++|++ ++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~li~e~~ 37 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRG-G-----LKNVVMFEKG 37 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCC
Confidence 457999999999999999999999 8 89999 8874
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.088 Score=47.30 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+|+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~vie~~~~ 37 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRS-G-----LSYVILDAEAS 37 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-S-----CCEEEECCSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5799999999999999999998 8 89999998753
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.11 Score=50.75 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=31.1
Q ss_pred CceEEEECCChHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~ 82 (303)
+.+|+|||+|..|.+.|..|++ . | .+|+++++.+
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQ-Q-----ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCS-S-----CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEECCCC
Confidence 4689999999999999999999 8 8 8999999864
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.11 Score=46.70 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=31.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++|+|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 39 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMR-G-----LSFRFVDPLPE 39 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence 46899999999999999999998 8 89999998753
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.093 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=30.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+++|+|||+|..|.+.|..|++. | ++|++++++.
T Consensus 1 ~~dVvVIGaG~aGl~aA~~L~~~-G-----~~V~vlE~~~ 34 (431)
T 3k7m_X 1 MYDAIVVGGGFSGLKAARDLTNA-G-----KKVLLLEGGE 34 (431)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 36899999999999999999999 9 8999998743
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.11 Score=44.62 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=32.6
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+++.|.|+ |.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~~ 40 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAE-G-----KATYLTGRSESKLST 40 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 356889998 78999999999999 9 889999999876653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.13 Score=45.31 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=35.2
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+..-......|... ..+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++.
T Consensus 14 ~~~~~~~~~~m~~l--~~k~vlITGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 68 (262)
T 3rkr_A 14 SGHIDDDDKHMSSL--SGQVAVVTGASRGIGAAIARKLGSL-G-----ARVVLTARDVEKLRA 68 (262)
T ss_dssp -----------CTT--TTCEEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred cCCCCCCcchhhcc--CCCEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 33334444444432 2367889987 89999999999999 9 899999999876654
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=92.63 E-value=1.1 Score=35.16 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEE-EecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l-~~r~~ 82 (303)
..+++.|+|+|..|..++..+..+.| +++.. ++.++
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g-----~~vvg~~d~~~ 39 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKE-----FHPIAFIDDDR 39 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSS-----EEEEEEECSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-----cEEEEEEECCc
Confidence 34789999999999999999977524 67664 45443
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.14 Score=44.38 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.+++..|++. | ++|++.+|+++.++.
T Consensus 12 k~vlITGasggiG~~la~~l~~~-G-----~~V~~~~r~~~~~~~ 50 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAAS-G-----ARLILIDREAAALDR 50 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 67999988 99999999999999 9 899999999875543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.16 Score=46.22 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~-G-----~~Vv~~~r~~~~~~~ 47 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQ-G-----CKVAIADIRQDSIDK 47 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 3468999998 89999999999999 9 899999999877654
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.087 Score=50.92 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred ceEEEECCChHHHHHHHHHHH---hcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||+|..|.+.|..|++ . | .+|+++++.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~-G-----~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDD-R-----IDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGG-G-----SEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEEecCC
Confidence 589999999999999999999 8 8 8999999864
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.1 Score=46.49 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++|+|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 41 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMR-Q-----ASVKIIESLPQ 41 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCCC
Confidence 36899999999999999999998 8 89999999763
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.19 Score=44.62 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=36.5
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-+|.--|+++|....-..+++.|.|+ |-+|.++|..|++. | .+|.+.+++.
T Consensus 14 ~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~-G-----~~V~~~~~~~ 65 (271)
T 3v2g_A 14 GTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALE-G-----AAVALTYVNA 65 (271)
T ss_dssp ------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred cccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 45555566676655545578999997 78999999999999 9 8999887664
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.11 Score=46.72 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=31.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+||.|.|+ |.+|..++..|.+. | ++|++++|++.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-G-----HPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-C-----CcEEEEECCCC
Confidence 48999997 99999999999998 8 89999999875
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.099 Score=51.92 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||+|..|.++|..|++. | ++|+++++.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~-G-----~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAG-G-----VGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHT-T-----CCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCCC
Confidence 3699999999999999999999 9 89999998764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.15 Score=45.74 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred CceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|+| +|.+|.+++..|++. | .+|++++|++++.++
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~-G-----~~V~i~~R~~~~~~~ 158 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA 158 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEECCHHHHHH
Confidence 37899999 899999999999999 8 789999999776543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.11 Score=51.26 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=36.0
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
...++|.|+|+|.+|..++..|.+. | ++|++++.+++.++.
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~~~-~-----~~vvvid~~~~~~~~ 165 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLESR-N-----HLFVVVTDNYDQALH 165 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTTTT-T-----CCEEEEESCHHHHHH
T ss_pred ccCCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 3457899999999999999999988 7 899999999987654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.13 Score=46.48 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=33.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |.+|.++|..|++. | ++|++.+|+++.+++
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~~ 65 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKE-G-----AQVTITGRNEDRLEE 65 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 67888887 89999999999999 9 899999999876543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.17 Score=45.73 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=31.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.|+|.|.|+ |.+|..++..|++. | ++|++++|+..
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 55 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQ-G-----HEILVIDNFAT 55 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGG-T-----CEEEEEECCSS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCc
Confidence 489999998 99999999999999 8 89999999754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.15 Score=45.94 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
|+|.|.|+ |.+|..++..|++. | ++|++++|+++..
T Consensus 4 ~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~~~ 40 (345)
T 2z1m_A 4 KRALITGIRGQDGAYLAKLLLEK-G-----YEVYGADRRSGEF 40 (345)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSCCSTT
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEECCCccc
Confidence 78999998 99999999999999 8 8999999987653
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.083 Score=47.03 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ |-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 27 k~~lVTGas~gIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 65 (271)
T 4ibo_A 27 RTALVTGSSRGLGRAMAEGLAVA-G-----ARILINGTDPSRVAQ 65 (271)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEECCSCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 67888887 88999999999999 9 899999999876654
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=92.21 E-value=0.16 Score=45.31 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=31.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|||.|.|+ |.+|+.++..|.+. | ++|++++|++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 37 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND-G-----NTPIILTRSIG 37 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence 479999996 99999999999999 8 89999999844
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.16 Score=50.16 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=35.6
Q ss_pred HHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 32 ~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+.++.........|.|||+|..|.+.|..+++. | .+|+++++.+.
T Consensus 115 ~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~ 160 (571)
T 1y0p_A 115 RQAALASAPHDTVDVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEPV 160 (571)
T ss_dssp HHHHHHSCCSEECSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred hhhhhccCCCCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 3344433333346899999999999999999999 9 89999988753
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=92.19 E-value=0.5 Score=44.55 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.0
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeecc
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKG 199 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nG 199 (303)
+.+ .+.++|+||+|+|.....+..+++. .. + +.||++..-
T Consensus 58 ~~~-~~~~~Dvvf~a~~~~~s~~~~~~~~---~~---G~k~~VID~ss~ 99 (370)
T 3pzr_A 58 DIE-SLKQLDAVITCQGGSYTEKVYPALR---QA---GWKGYWIDAAST 99 (370)
T ss_dssp CHH-HHTTCSEEEECSCHHHHHHHHHHHH---HT---TCCCEEEECSST
T ss_pred Chh-HhccCCEEEECCChHHHHHHHHHHH---HC---CCCEEEEeCCch
Confidence 444 3679999999999988777777654 22 4 478887754
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.57 Score=44.30 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=29.4
Q ss_pred CHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCC--CEEEEeeccC
Q 022050 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (303)
Q Consensus 153 d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~--~iivs~~nGi 200 (303)
+.+ .+.++|+||+|+|.....+..+++.. . + +.||++..-+
T Consensus 62 ~~~-~~~~vDvvf~a~~~~~s~~~~~~~~~---~---G~k~~VID~ss~f 104 (377)
T 3uw3_A 62 SID-DLKKCDVIITCQGGDYTNDVFPKLRA---A---GWNGYWIDAASSL 104 (377)
T ss_dssp CHH-HHHTCSEEEECSCHHHHHHHHHHHHH---T---TCCSEEEECSSTT
T ss_pred Chh-HhcCCCEEEECCChHHHHHHHHHHHH---C---CCCEEEEeCCccc
Confidence 443 35789999999999888877776543 2 4 3788887543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.09 E-value=0.22 Score=44.33 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+++.|.|+ |-+|.++|..|++. | .+|.+.+|++
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~ 65 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARA-G-----AHVLAWGRTD 65 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESST
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEcCHH
Confidence 367889997 78999999999999 9 8999999764
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=92.08 E-value=0.16 Score=45.60 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=33.7
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.|+|.|.|+ |.+|+.++..|++. | ++|++++|+++..+
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 49 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEH-G-----YKVRGTARSASKLA 49 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCcccHH
Confidence 379999998 99999999999999 8 89999999876543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.16 Score=44.47 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=34.0
Q ss_pred CceEEEECC-C-hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-G-AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G-~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+++.|.|+ | -+|.++|..|++. | ++|++.+|+++.++.
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~~ 62 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLE-G-----ADVVISDYHERRLGE 62 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCCCchHHHHHHHHHHC-C-----CEEEEecCCHHHHHH
Confidence 468999999 8 4999999999999 9 899999999876554
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.22 Score=44.91 Aligned_cols=38 Identities=21% Similarity=0.126 Sum_probs=31.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 30 KvalVTGas~GIG~aiA~~la~~-G-----a~V~i~~r~~~~l~~ 68 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAE-G-----ARVFITGRRKDVLDA 68 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45566677 67999999999999 9 899999999887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.22 Score=42.73 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=33.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~-G-----~~V~~~~r~~~~~~~ 41 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARD-G-----YALALGARSVDRLEK 41 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 367889997 78999999999999 9 899999999876654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.18 Score=46.29 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
-.+|.|+|+|.+|.+.+..+... | .+|+..++++++.+
T Consensus 177 g~~VlV~GaG~vG~~a~qla~~~-G-----a~Vi~~~~~~~~~~ 214 (348)
T 3two_A 177 GTKVGVAGFGGLGSMAVKYAVAM-G-----AEVSVFARNEHKKQ 214 (348)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSSTTHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 37899999999999977777666 8 78999999987665
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.14 Score=45.44 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=30.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~ 81 (303)
+++|+|||+|.-|.+.|..|++. | + +|++++++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~~v~lie~~ 34 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRG-G-----VKNAVLFEKG 34 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CSSEEEECSS
T ss_pred CceEEEECccHHHHHHHHHHHHC-C-----CCcEEEEcCC
Confidence 36899999999999999999998 8 8 99999985
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.18 Score=45.61 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=31.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|.|.|+ |.+|..++..|++. | ++|++++|++.
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 56 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLER-G-----DKVVGIDNFAT 56 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEECCCc
Confidence 589999996 99999999999998 8 89999999764
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.1 Score=50.77 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMR-G-----HRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhC-C-----CCEEEEccCC
Confidence 6899999999999999999998 8 8999999886
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.83 E-value=0.16 Score=47.77 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCee--EEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL--IRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~--V~l~~r~~~ 83 (303)
.+++|+|||+|.-|.+.|..|++. | ++ |+++++.+.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~-g-----~~~~V~lie~~~~ 45 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN-G-----FEGRVLVIGREPE 45 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCSCEEEEESSSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc-C-----cCCCEEEEecCCC
Confidence 347899999999999999999998 8 55 999998763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 303 | ||||
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 4e-06 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-04 |
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 44.4 bits (104), Expect = 4e-06
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 63/235 (26%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W E+ +
Sbjct: 9 KAVVFGSGAFGTALAMVLSKK----CREV--CVWHM-------------------NEEEV 43
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R + + + +++ N+ T ++++A A+I+
Sbjct: 44 RLVNEKRENVLFLK--------------GVQLASNITFTS--------DVEKAYNGAEII 81
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E
Sbjct: 82 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS-------TLKFPAEIIGEF 134
Query: 223 VPIENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHFTVW 272
+P + L GP+ A E+ + I A + ++ ++ R F W
Sbjct: 135 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS--FVCW 187
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 40.3 bits (94), Expect = 1e-04
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD 160
++V+ + + R + + C++++ LKV ++ +EAV
Sbjct: 82 KEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEG 141
Query: 161 ADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
ADIVI LP ++ ++ + E V ++ A++
Sbjct: 142 ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.97 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.95 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.79 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.77 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.68 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.64 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.6 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.56 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.48 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.47 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.46 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.39 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.34 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 99.26 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.25 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.24 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.22 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.15 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.08 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.86 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.72 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.71 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.67 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.67 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.61 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.6 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.57 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.56 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.56 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.55 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.53 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.5 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.48 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.38 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.35 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.29 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.26 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.24 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.22 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.2 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.18 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.16 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.15 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.12 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.11 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.0 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.9 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.9 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.88 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.86 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.86 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.83 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.78 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.77 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.72 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.71 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.71 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.7 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.7 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.67 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.64 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.58 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.55 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.54 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.52 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.51 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.46 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.45 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.44 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.31 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.23 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.19 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 97.13 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 97.1 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.04 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.02 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.01 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.98 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.96 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.94 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.94 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.88 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.84 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.82 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.82 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 96.78 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.76 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.73 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.71 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.66 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.61 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.61 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.59 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 96.58 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.57 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.57 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 96.51 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.47 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.38 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.35 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 96.35 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.32 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.29 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.27 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.24 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.18 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.17 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.12 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.1 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.09 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.09 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.09 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.07 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.07 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.07 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.06 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.06 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.06 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.05 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.98 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 95.93 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.9 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.8 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.78 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.66 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.66 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.63 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.57 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.49 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.47 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.45 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 95.37 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.36 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.35 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 95.33 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.19 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.14 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.02 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.01 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.98 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.96 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.89 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.85 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.75 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.7 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 94.68 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.68 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 94.65 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.54 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.53 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 94.53 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 94.52 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 94.5 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.46 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 94.41 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.31 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.0 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.9 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.86 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 93.82 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.72 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.72 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.69 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.67 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 93.52 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.45 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 93.29 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.27 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.23 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.07 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 93.03 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 92.92 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 92.9 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.8 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 92.77 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.72 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.71 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.68 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 92.59 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.56 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 92.42 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 92.37 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.33 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.31 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.3 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.22 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.13 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.74 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.63 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 91.55 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 91.16 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.13 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 91.1 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.09 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.07 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 90.94 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 90.74 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 90.67 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.67 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.57 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.44 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 90.33 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.31 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.29 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 90.25 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.23 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.19 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 90.15 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 90.15 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.1 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 90.1 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 90.09 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.05 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.99 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 89.97 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 89.94 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.94 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 89.84 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 89.75 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 89.74 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 89.66 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.65 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.52 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.51 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 89.43 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.42 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 89.32 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 89.19 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.16 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 89.07 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.0 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 88.97 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 88.96 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 88.93 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.9 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 88.74 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.72 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 88.67 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 88.67 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 88.53 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.51 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.45 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.39 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 88.39 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 88.38 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 88.34 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 88.3 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.27 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 88.17 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.03 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 87.94 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 87.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.85 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.77 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.69 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 87.64 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.64 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.58 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 87.55 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 87.5 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 87.16 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 87.08 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 86.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 86.64 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 86.62 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 86.44 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 86.4 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 86.37 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.35 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 86.25 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.24 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 86.17 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 86.14 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.86 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.84 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 85.82 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 85.73 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 85.72 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 85.69 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 85.69 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.67 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 85.62 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 85.59 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 85.58 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 85.41 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 85.38 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.37 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 85.34 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 85.04 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 84.93 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 84.86 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 84.78 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.4 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 84.23 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 83.77 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 83.48 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 83.36 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 83.28 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 82.8 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 82.49 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 82.31 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 81.94 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 81.33 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 80.76 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 80.44 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.31 |
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.97 E-value=5.2e-30 Score=221.85 Aligned_cols=175 Identities=18% Similarity=0.334 Sum_probs=147.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|+||+|||+|+||+++|..|+++ | |+|++|+|+++.++.++..| +|+.|++++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~-g-----~~V~l~~r~~~~~~~i~~~~----------------~n~~yl~~~----- 59 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNEKR----------------ENVLFLKGV----- 59 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT-E-----EEEEEECSCHHHHHHHHHHT----------------BCTTTSTTC-----
T ss_pred eceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEEecHHHHHHHhhcc----------------ccccccccc-----
Confidence 46799999999999999999999 8 99999999998887655432 366677654
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHh-----hccCCCCEEEEee
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW-----KERITVPVIISLA 197 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l-----~~~~~~~iivs~~ 197 (303)
.++ .++.+++|++++++++|+||+|||++.++++++++.+++ ++ +.++++++
T Consensus 60 --~l~------------------~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~---~~~ii~~t 116 (189)
T d1n1ea2 60 --QLA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK---QVPVLVCT 116 (189)
T ss_dssp --BCC------------------TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHH---TCCEEECC
T ss_pred --ccc------------------cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccC---CcEEEEEE
Confidence 332 379999999999999999999999999999999998753 34 67899999
Q ss_pred ccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcC--CCeEEEec
Q 022050 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRR--PHFTVWDN 274 (303)
Q Consensus 198 nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~--~g~~~~~~ 274 (303)
||++.+ +..++++++.+.++. .++++++||+||.|+++|.|+.+++ +.+.+.++.++++|++ ..|++|.+
T Consensus 117 KGie~~-----t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i~~lfst~~~~frvy~S 189 (189)
T d1n1ea2 117 KGIERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWAT 189 (189)
T ss_dssp CSCCTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEE
T ss_pred CCCccC-----CccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCCCEEEecC
Confidence 999876 578899999998864 4588999999999999999987766 5677889999999986 45999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2.2e-27 Score=203.31 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=137.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc--hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
|||+|||+|+||+++|..|+++ | ++|++|.|+.+ .++.++ ..+ .|+.+...
T Consensus 1 MkI~ViGaG~~GtalA~~la~~-g-----~~V~l~~r~~~~~~~~~i~---------~~~-------~~~~~~~~----- 53 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKSIS---------AGR-------EHPRLGVK----- 53 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHHHH---------TTC-------CBTTTTBC-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEEecccHHHHHHHh---------hhh-------hhhhhcch-----
Confidence 8999999999999999999999 8 99999998543 343332 211 12222111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+. ...+.+++|++++++++|+||+|||++.++++++++.+++++ ..++++++|+.
T Consensus 54 ----~~-----------------~~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~----~~ii~~tkg~~ 108 (180)
T d1txga2 54 ----LN-----------------GVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLI 108 (180)
T ss_dssp ----CC-----------------SEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCS----CEEEECCCSEE
T ss_pred ----hc-----------------cccccccccHHHHHhccchhhcccchhhhHHHHHhhcccccc----ceecccccCcc
Confidence 10 124667889999999999999999999999999999999875 57888899986
Q ss_pred cccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEE-eCChhhHHHHHHHhcCCCeEEEecC
Q 022050 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNG 275 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~-~~~~~~~~~i~~lf~~~g~~~~~~~ 275 (303)
... ....++++++.+..+.....+++++||+||.|++.+.|+.+++ +.+.+.++.++++|++.+|++|.+.
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~~a~~i~~~f~~~~frvy~St 180 (180)
T d1txga2 109 DFD---NSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (180)
T ss_dssp EET---TEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred ccc---cccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHHHHHHHHHHHCCCCEEEEeCC
Confidence 531 1234578888887765434688999999999999999987766 5667889999999999999999863
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.79 E-value=2.5e-19 Score=148.61 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=114.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||++++..|.++ | ++|++|+|++++.+++.++ +
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~-~-----~~i~v~~r~~~~~~~l~~~-------------------------~------ 43 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEIAEQ-------------------------L------ 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHHHHH-------------------------H------
T ss_pred CEEEEEeccHHHHHHHHHHHhC-C-----CeEEEEcChHHhHHhhccc-------------------------c------
Confidence 8999999999999999999988 7 8999999998765532110 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
++.++.+++++++.+|+||+|||++.+++++++ +++ +++|+|+++|+..+
T Consensus 44 -----------------------g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~----l~~---~~~iis~~agi~~~ 93 (152)
T d2ahra2 44 -----------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKP----LHF---KQPIISMAAGISLQ 93 (152)
T ss_dssp -----------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTT----SCC---CSCEEECCTTCCHH
T ss_pred -----------------------ceeeechhhhhhhccceeeeecchHhHHHHhhh----ccc---ceeEecccccccHH
Confidence 233456788889999999999999999888765 344 67899999998874
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEec
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDN 274 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~~ 274 (303)
.+.+.++.. . ..++.+||++..+..+........ .+++..+.++++|+.-|...++.
T Consensus 94 ------------~l~~~l~~~-~-~ivr~mPN~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 151 (152)
T d2ahra2 94 ------------RLATFVGQD-L-PLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTFDIS 151 (152)
T ss_dssp ------------HHHHHHCTT-S-CEEEEECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred ------------HHHhhhccc-c-cchhhccchhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence 367777643 2 357889999998887643322211 24668899999999988776654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.77 E-value=6.2e-19 Score=145.90 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=113.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||.+|+..|.++ | +++|.+|+|++++++++.++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~-~----~~~i~v~~r~~~~~~~l~~~-------------------------------- 43 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ-G----GYRIYIANRGAEKRERLEKE-------------------------------- 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C----SCEEEEECSSHHHHHHHHHH--------------------------------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C----CCcEEEEeCChhHHHHhhhh--------------------------------
Confidence 8999999999999999999888 6 27999999998876542210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.++.++++.+ ++.++|+||+||||+.++++++++.+ . +++++|+++|+..+
T Consensus 44 ----------------------~~~~~~~~~~-~v~~~Div~lavkP~~~~~v~~~l~~---~---~~~viS~~ag~~~~ 94 (152)
T d1yqga2 44 ----------------------LGVETSATLP-ELHSDDVLILAVKPQDMEAACKNIRT---N---GALVLSVAAGLSVG 94 (152)
T ss_dssp ----------------------TCCEEESSCC-CCCTTSEEEECSCHHHHHHHHTTCCC---T---TCEEEECCTTCCHH
T ss_pred ----------------------cccccccccc-cccccceEEEecCHHHHHHhHHHHhh---c---ccEEeecccCCCHH
Confidence 0244555554 46789999999999999999888653 2 57999999998874
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEe-CChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~-~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
.+++.++.. ...++.+|+++..++.|.+...... .+.++.+.++++|+.-|..+++
T Consensus 95 ------------~l~~~l~~~--~~iir~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 151 (152)
T d1yqga2 95 ------------TLSRYLGGT--RRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTVWL 151 (152)
T ss_dssp ------------HHHHHTTSC--CCEEEEECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred ------------HHHHHhCcC--cceEeecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 477888643 2368899999999988754322221 2456789999999998876664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.70 E-value=7.3e-17 Score=134.43 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=104.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.||++||..|.++ | ++|++|||+++.++++++.+ .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g-----~~V~~~d~~~~~~~~a~~~~------------------------~------ 44 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAVERQ------------------------L------ 44 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHTT------------------------S------
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCchHHHHHHHhh------------------------c------
Confidence 8999999999999999999999 8 99999999987665422110 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
-..+.++. +++++||+||+|||+..++++++++.+++++ +++|+++.+ ....
T Consensus 45 -----------------------~~~~~~~~-~~~~~~DiIilavp~~~~~~vl~~l~~~l~~---~~iv~~~~s-~~~~ 96 (165)
T d2f1ka2 45 -----------------------VDEAGQDL-SLLQTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDVAS-VKTA 96 (165)
T ss_dssp -----------------------CSEEESCG-GGGTTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEECCS-CCHH
T ss_pred -----------------------cceeeeec-ccccccccccccCcHhhhhhhhhhhhhhccc---ccceeeccc-cchH
Confidence 01233444 5689999999999999999999999999887 677766543 2221
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEE-----eCCCcHH-HHhccCceEEEE--eCChhhHHHHHHHhcCCCeEEEe
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYL-----GGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~-----~GP~~a~-ev~~g~~~~~~~--~~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
..+.+.+.... ....-.+ +||..+. +...+.+..++. ..+.+..+.++++|+..|++++.
T Consensus 97 ---------~~~~~~~~~~~-~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 97 ---------IAEPASQLWSG-FIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp ---------HHHHHHHHSTT-CEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred ---------HHHHHHHhhcc-cccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 11223333221 1111122 3333332 233455544443 24567889999999999999874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.4e-17 Score=137.75 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=105.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|+||+++|..|++. | ++|++|+|++++.+..+.. ....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~-G-----~~V~~~~r~~~~~~~~~~~---------------------~~~~------- 46 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNLV---------------------ETDG------- 46 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEEE---------------------CTTS-------
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CceEEEEcCHHHhhhhccc---------------------cCCc-------
Confidence 8999999999999999999999 9 9999999999765432110 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .......+..++..++|+||++||+++++++++.+.+++.+ ++.|++++||+...
T Consensus 47 -~~-------------------~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~---~~~Iv~~qNG~~~~ 103 (167)
T d1ks9a2 47 -SI-------------------FNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (167)
T ss_dssp -CE-------------------EEEEEEESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -cc-------------------cccccccchhhhhcccceEEEeecccchHHHHHhhccccCc---ccEEeeccCcccHH
Confidence 00 01223334455678999999999999999999999999887 78999999999875
Q ss_pred cccccccCCHHHHHHhHhCCCC----ccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEE
Q 022050 204 LEAVPRIITPTQMINRATGVPI----ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTV 271 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~----~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~ 271 (303)
. .+.+. ..+. ........|+...+.+.|.+.+.......+..+.+.++|+.....+
T Consensus 104 ~-----------~l~~~-~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~~~~~~~~~l~~~l~~a~~~~ 163 (167)
T d1ks9a2 104 E-----------ELQNI-QQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDV 163 (167)
T ss_dssp G-----------GGTTC-CSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCE
T ss_pred H-----------HHhhc-CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCCCcchhHHHHHHHHHhhCCCC
Confidence 2 12221 1110 0112334455555555554322111223345678888888765555
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.8e-16 Score=134.16 Aligned_cols=182 Identities=13% Similarity=0.188 Sum_probs=116.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.+||+|||+|.||+.||..++.+ | ++|++||++++.+++.... +.+.+ ....+........
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~a~~~-i~~~l-------~~~~~~~~~~~~~----- 64 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKKG-IEESL-------RKVAKKKFAENPK----- 64 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHH-HHHHH-------HHHHHTTSSSCHH-----
T ss_pred eEEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHHHHhh-HHHHH-------HHHHHhhhhccch-----
Confidence 37999999999999999999999 9 9999999999887764421 11111 1111110000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
. .++.. +..+.++..++|+.+++.+||+|++|+|+. .+.+++++|.+++++ ++++.|+++++
T Consensus 65 ---~-~~~~~---------~~~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~l 128 (192)
T d1f0ya2 65 ---A-GDEFV---------EKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSSL 128 (192)
T ss_dssp ---H-HHHHH---------HHHHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSSS
T ss_pred ---h-hHHHH---------HHHHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhccc---CceeeccCccc
Confidence 0 00000 000136888999999999999999999996 589999999999998 89999999999
Q ss_pred ccccccccccCCHHHHHHhHhCCCCc--c-EEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 201 EAELEAVPRIITPTQMINRATGVPIE--N-ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~i~~~l~~~~~--~-~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
..+.+ ......+++++.-||..|.+ + +.++.||.+. ++..+.+.+++...|..+....|
T Consensus 129 ~i~~l-a~~~~~p~r~ig~HffnP~~~~~lVEIv~g~~T~----------------~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 129 QITSI-ANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTS----------------QKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp CHHHH-HTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCC----------------HHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccchh-hhhccCHhHEEeeccccccCcccEEEEcCCCCCC----------------HHHHHHHHHHHHHcCCEEEEeec
Confidence 87531 11233444444444433321 1 2344444443 34455666666666766665554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.60 E-value=1.4e-15 Score=127.35 Aligned_cols=109 Identities=21% Similarity=0.260 Sum_probs=84.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|+||+++|..|+++ | ++|.+|+|++++++.++..+ .+..+.+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~------ 53 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQDRG----------------AIIAEGPGL------ 53 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHT----------------SEEEESSSC------
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHcC----------------CCchhhhhh------
Confidence 7999999999999999999999 9 99999999998877654321 111122111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
... ......++|+.++++++|+||++||++..++++++|++++.+ +++|+ .++|...
T Consensus 54 -~~~-----------------~~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~---~~~iv-~~~g~~~ 110 (184)
T d1bg6a2 54 -AGT-----------------AHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLII-LNPGATG 110 (184)
T ss_dssp -CEE-----------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEE-ESSCCSS
T ss_pred -hhh-----------------hhhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCC---CCEEE-EeCCCCc
Confidence 000 024567889999999999999999999999999999999987 67655 6666554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.56 E-value=2.7e-15 Score=128.07 Aligned_cols=177 Identities=12% Similarity=0.128 Sum_probs=110.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+.+||+|||+|.||+.||..++.+ | ++|++||++++.+++.... +... +.+........+..
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~~~~~-i~~~-------l~~~~~~~~~~~~~---- 64 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLAE-AAKL-------LVGRVDKGRMTPAK---- 64 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHH-HHHH-------HHHHHTTTSSCHHH----
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHhhhhhh-hhhh-------HHhhhcccccchhh----
Confidence 468899999999999999999999 9 8999999999877653321 1111 11111111111100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch--hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~--~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
++ ..+.++..+++.+ ++.+||+||+++|+. .+++++++|.+++++ ++++.|.+++
T Consensus 65 ------~~-------------~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~lf~~l~~~~~~---~~IiaSnTS~ 121 (186)
T d1wdka3 65 ------MA-------------EVLNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 121 (186)
T ss_dssp ------HH-------------HHHHHEEEESSST-TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ------hh-------------hhhceeecccccc-cccccceeeeeecchHHHHHHHHHHHHhhcCC---CeeEEecccc
Confidence 00 0012577777765 588999999999997 588999999999998 8999999999
Q ss_pred CccccccccccCCHHHHHHhHhCCCCc--c-EEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEecCC
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIE--N-ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~--~-~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~~~D 276 (303)
+..+.+ ......|++++..||..|.+ + +.++.||.+ +++..+.+.+++...|..+....|
T Consensus 122 l~i~~l-a~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T----------------~~~~~~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 122 ISISLL-AKALKRPENFVGMHFFNPVHMMPLVEVIRGEKS----------------SDLAVATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp SCHHHH-GGGCSCGGGEEEEECCSSTTTCCEEEEEECSSC----------------CHHHHHHHHHHHHHTTCEEEEEES
T ss_pred ccHHHH-HHhccCchheEeeccccCcccCCeEEECCCCCC----------------CHHHHHHHHHHHHHcCCEEEEEec
Confidence 988631 11223344444444332221 1 223333333 334455666666666666655444
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.48 E-value=2.2e-13 Score=112.98 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=100.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.||..+|..|+++ | ++|++|||++++.+.+.+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~-G-----~~V~~~d~~~~~~~~~~~--------------------------------- 41 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADVIA--------------------------------- 41 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------------------------------
T ss_pred CEEEEEehhHHHHHHHHHHHHC-C-----CeEEEEeCCcchhHHHHH---------------------------------
Confidence 8999999999999999999999 9 999999999876543210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-hhHHHHH---HHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~-~~~~~vl---~~l~~~l~~~~~~~iivs~~nG 199 (303)
.......++.++++++|+||++||. .++++++ +.+.+.+.+ ++++|.++..
T Consensus 42 ----------------------~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~---g~iiid~sT~ 96 (161)
T d1vpda2 42 ----------------------AGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI 96 (161)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred ----------------------hhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCC---CCEEEECCCC
Confidence 0234556788889999999999985 4677777 456777776 7888876543
Q ss_pred CccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE
Q 022050 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 200 i~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
.++. .+.+.+.+... .+..+..|-. +.....|..+ +.++++.+..++++.+|+.-+-+++
T Consensus 97 -~p~~---------~~~~~~~~~~~--g~~~vdapv~gg~~~a~~g~l~-~~~gG~~~~~~~~~~il~~~~~~i~ 158 (161)
T d1vpda2 97 -APLA---------SREISDALKAK--GVEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVV 158 (161)
T ss_dssp -CHHH---------HHHHHHHHHTT--TCEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHTTEEEEE
T ss_pred -CHHH---------HHHHHHHHHHc--CCceecccccCChhHHhcCCeE-EEEcCCHHHHHHHHHHHHHhcCceE
Confidence 2221 12233333211 1233333333 1222234322 3456777888899999987665554
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.47 E-value=1.9e-13 Score=113.55 Aligned_cols=161 Identities=16% Similarity=0.117 Sum_probs=102.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|+||+|||+|.||++||..|.++ |+ +.+|+.||++++.++.+++.+ .
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~-g~---~~~I~~~D~~~~~~~~a~~~~---------------------~-------- 47 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS-GF---KGKIYGYDINPESISKAVDLG---------------------I-------- 47 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-TC---CSEEEEECSCHHHHHHHHHTT---------------------S--------
T ss_pred CCEEEEEccCHHHHHHHHHHHhc-CC---CeEEEEEECChHHHHHHHHhh---------------------c--------
Confidence 56799999999999999999988 72 146888999887665322100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~-a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
-....++..+ ...++|+||+|+|++...++++++.+++++ +++++.+.+.-.
T Consensus 48 ------------------------~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~---~~ii~d~~s~k~ 100 (171)
T d2g5ca2 48 ------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSVKG 100 (171)
T ss_dssp ------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSCCT
T ss_pred ------------------------chhhhhhhhhhhccccccccccCCchhhhhhhhhhhccccc---cccccccccccH
Confidence 0112233332 345799999999999999999999999987 777776664322
Q ss_pred cccccccccCCHHHHHHhHhCCC---CccEE--EEeCCCcHH-HHhccCceEEEEe--CChhhHHHHHHHhcCCCeEEEe
Q 022050 202 AELEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~i~~~l~~~---~~~~~--v~~GP~~a~-ev~~g~~~~~~~~--~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
. ..+.+.+.++.. .||++ ..+||..+. .+..|.+..++.. .+.+..+.++++|+.-|.++..
T Consensus 101 ~----------~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 101 K----------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp H----------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred H----------HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 2 112333333321 23321 123444433 2345554443332 3456789999999988877653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.39 E-value=3.9e-12 Score=109.12 Aligned_cols=179 Identities=17% Similarity=0.086 Sum_probs=112.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.+|.++|..||++ | ++|+.||.+++.++.++... .|.+.+.+...+
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~-g-----~~V~g~D~n~~~i~~ln~g~-----------------~p~~e~~~~~~l-- 55 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLINQGK-----------------SPIVEPGLEALL-- 55 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHTTC-----------------CSSCCTTHHHHH--
T ss_pred CEEEEECCCHhHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHhcccC-----------------Ccccchhhhhhh--
Confidence 8999999999999999999999 9 99999999999888765321 111111111000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------hHHHHHHHHHHHhhccCCCCEE
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------~~~~vl~~l~~~l~~~~~~~ii 193 (303)
..... ...+.+++|..++++++|++++|||.. .+..+.+.+...++...++++|
T Consensus 56 ---------~~~~~-------~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~li 119 (202)
T d1mv8a2 56 ---------QQGRQ-------TGRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (202)
T ss_dssp ---------HHHHH-------TTCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ---------hhhhc-------ccccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcce
Confidence 00000 025788999999999999999999862 4667777777766531114444
Q ss_pred EEeeccCccccccccccCCHHHHHHhHhCCC-CccEEEEeCCCcHHHHhc----cCceEEEE-eCChhhHHHHHHHhcCC
Q 022050 194 ISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARI-CGAEKWRKPLAKFLRRP 267 (303)
Q Consensus 194 vs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~-~~~~~v~~GP~~a~ev~~----g~~~~~~~-~~~~~~~~~i~~lf~~~ 267 (303)
.+.+.+.+.+ +......++.+..+.. ...+.+.+.|.+..+... ..+..+++ +.+.+..+.++++|+.-
T Consensus 120 -ii~STv~pGt----t~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i 194 (202)
T d1mv8a2 120 -VVRSTVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (202)
T ss_dssp -EECSCCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred -eeccccCCcc----hhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 4555555542 1122233444444322 123567888988764321 12333344 45667888999999764
Q ss_pred C
Q 022050 268 H 268 (303)
Q Consensus 268 g 268 (303)
.
T Consensus 195 ~ 195 (202)
T d1mv8a2 195 D 195 (202)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.34 E-value=5.3e-12 Score=104.57 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=96.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|+||+|||.|.||++||..|+++ | ++|.+|||++++.+.+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~-g-----~~v~~~d~~~~~~~~~~~-------------------------------- 42 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGLVA-------------------------------- 42 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH--------------------------------
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC-C-----CeEEEEECchhhhhhhhh--------------------------------
Confidence 68999999999999999999999 9 999999999876543110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHH---HHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~---l~~~l~~~~~~~iivs~~n 198 (303)
.......++.+++..+|+|++++|.. ..++++.. +.+.+.+ +++++.++.
T Consensus 43 -----------------------~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~---g~iiid~st 96 (162)
T d3cuma2 43 -----------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECST 96 (162)
T ss_dssp -----------------------TTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCT---TCEEEECSC
T ss_pred -----------------------hhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCCC---CCEEEECCC
Confidence 02334466788899999999999986 45666654 5555665 677776554
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccE---EEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEE
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENI---LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~---~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
. .++. ...+.+.+......+ -+..||..+ ..|.. .+.++++.+..++++.+|+.-+.+++
T Consensus 97 ~-~p~~---------~~~~~~~~~~~gi~~~dapv~Gg~~~a---~~G~l-~~~~gG~~~~~~~~~~il~~~~~~v~ 159 (162)
T d3cuma2 97 I-APTS---------ARKIHAAARERGLAMLDAPVSGGTAGA---AAGTL-TFMVGGDAEALEKARPLFEAMGRNIF 159 (162)
T ss_dssp C-CHHH---------HHHHHHHHHHTTCEEEECCEESCHHHH---HHTCE-EEEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred C-CHHH---------HHHHHHHHHHCCCcEEecccccCcccc---ccCCe-EEEecCCHHHHHHHHHHHHHHcCccE
Confidence 3 3321 112333221111111 133344333 34432 23456777778888888876555443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.26 E-value=4e-11 Score=98.68 Aligned_cols=196 Identities=11% Similarity=0.078 Sum_probs=113.1
Q ss_pred ceEEEE-CCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGV-GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VI-GaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|+ |+|.||.++|..|+++ | ++|++|+|++++++.+.++ +... ...
T Consensus 1 Mki~vigGaG~iG~alA~~la~~-G-----~~V~l~~R~~e~~~~l~~~-----i~~~-----------~~~-------- 50 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----YRRI-----------AGD-------- 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----HHHH-----------HSS--------
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHH-----HHhc-----------CCC--------
Confidence 899999 7899999999999999 9 9999999999887754422 1110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
......+........+....+++.....+.+..+...... ............
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 102 (212)
T d1jaya_ 51 ------------------------ASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILRE----KIVVSPLVPVSR 102 (212)
T ss_dssp ------------------------CCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTT----SEEEECCCCEEC
T ss_pred ------------------------ceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhcc----cccccccccccc
Confidence 1112233444455678888888877666665554443322 222222222111
Q ss_pred ccc--cccccCCHHHHHHhHhCCCCccEEEE---eCCCcHHHHh-ccCceEEEEeCChhhHHH-HHHHhcCCCeEEEecC
Q 022050 203 ELE--AVPRIITPTQMINRATGVPIENILYL---GGPNIASEIY-NKEYANARICGAEKWRKP-LAKFLRRPHFTVWDNG 275 (303)
Q Consensus 203 ~~~--~~~~~~~~~~~i~~~l~~~~~~~~v~---~GP~~a~ev~-~g~~~~~~~~~~~~~~~~-i~~lf~~~g~~~~~~~ 275 (303)
... .........+.....+... ..... .++....+.. .+.+.....+.+...... +..+....+|+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~g~~~~--- 177 (212)
T d1jaya_ 103 GAKGFTYSSERSAAEIVAEVLESE--KVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPL--- 177 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTCS--CEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEE---
T ss_pred ccccccccccchhhhhhhhhhhhh--cccccceeecHHHhcCcccccCccceEEeCCHHHHHHHHHHHhhCCCeEEE---
Confidence 100 0012344555566666432 11111 1222222222 222233334555544443 4456667899887
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhcC
Q 022050 276 DLVTHEVMGGLKNVYAIGAGTIYFLVM 302 (303)
Q Consensus 276 Di~g~e~~~~lkNv~Ai~~G~~~gl~~ 302 (303)
|+=+++.++.++|+.++.+|++.+..+
T Consensus 178 ~~G~l~~a~~~e~~~~l~~~~~~~~~~ 204 (212)
T d1jaya_ 178 DAGPLSNSRLVESLTPLILNIMRFNGM 204 (212)
T ss_dssp EEESGGGHHHHHTHHHHHHHHHHHHTC
T ss_pred EeChHHHHHHHHhHHHHHHHHHHhCCC
Confidence 444678999999999999999988765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.25 E-value=3.6e-11 Score=97.96 Aligned_cols=145 Identities=24% Similarity=0.264 Sum_probs=99.7
Q ss_pred CCCCceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 40 EGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 40 ~~~~~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
...++||+||| .|.||+.||..|.++ | ++|.+||+++...
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~-G-----~~V~~~d~~~~~~--------------------------------- 46 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWAV--------------------------------- 46 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGGG---------------------------------
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHc-C-----CCcEecccccccc---------------------------------
Confidence 34578999999 899999999999999 9 9999999986421
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.++.+.++|++++++|.....+++.++.+++++ +++++.++
T Consensus 47 -----------------------------------~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~---~~iiiD~~- 87 (152)
T d2pv7a2 47 -----------------------------------AESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADLT- 87 (152)
T ss_dssp -----------------------------------HHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEECC-
T ss_pred -----------------------------------cchhhhhccccccccchhhheeeeecccccccC---CceEEEec-
Confidence 112356899999999999999999999998887 78877665
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEEEEeCChhhHHHHHHHhcCCCeEEEe
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
++... +.+.+.+..+......--+.||..... .+.....+...+.+..+.+.++|+..|.+++-
T Consensus 88 Svk~~---------~~~~~~~~~~~~~v~~hP~~Gp~~~~~--~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 88 SVKRE---------PLAKMLEVHTGAVLGLHPMFGADIASM--AKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp SCCHH---------HHHHHHHHCSSEEEEEEECSCTTCSCC--TTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred ccCHH---------HHHHHHHHccCCEEEecccCCCccccc--CCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 33222 223344444321001124466655321 23222223345566788999999998888764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=2.2e-13 Score=111.47 Aligned_cols=146 Identities=14% Similarity=0.042 Sum_probs=85.4
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (303)
|+|||+|+||.+|+..|.+. + +.+.+|+|++++++++.++ .
T Consensus 2 IgfIG~G~mg~~l~~~L~~~-~-----~~~~v~~R~~~~~~~l~~~----------------------~----------- 42 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR-Y-----EIGYILSRSIDRARNLAEV----------------------Y----------- 42 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHH----------------------T-----------
T ss_pred EEEEeCcHHHHHHHHHHHhC-C-----CEEEEEeCChhhhcchhhc----------------------c-----------
Confidence 78999999999999998665 4 4456899998876543210 0
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccc
Q 022050 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (303)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~ 205 (303)
... ..++.++++.+|+||+|||++++.+++++|. .+ ++++++++++...+.
T Consensus 43 ---------------------~~~-~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~---~~---~~ivi~~s~~~~~~~- 93 (153)
T d2i76a2 43 ---------------------GGK-AATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLSSEI- 93 (153)
T ss_dssp ---------------------CCC-CCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSCGGG-
T ss_pred ---------------------ccc-ccchhhhhccCcEEEEeccchhhhHHHhhhc---cc---ceeeeecccchhhhh-
Confidence 001 1234466789999999999999999988764 23 688999988776542
Q ss_pred cccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccC-ceEEEEeCChhhHHHHHHHhcCCCeEEEe
Q 022050 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE-YANARICGAEKWRKPLAKFLRRPHFTVWD 273 (303)
Q Consensus 206 ~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~-~~~~~~~~~~~~~~~i~~lf~~~g~~~~~ 273 (303)
+..... ..+..+..|.......... ...+.+.++++..+.++.+|+.-|.+++.
T Consensus 94 -----------l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~ 148 (153)
T d2i76a2 94 -----------FKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFV 148 (153)
T ss_dssp -----------GCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEE
T ss_pred -----------hhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEE
Confidence 221110 0111122222222221111 12233456777888889998877765543
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.22 E-value=6.9e-11 Score=96.53 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=66.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||.|.||+++|..|+++ | ++|++|++++....+... .+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~-g-----~~v~~~~~~~~~~~~~~~------------------------~~~------ 44 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIERA------------------------RTV------ 44 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHHH------------------------HHH------
T ss_pred CEEEEEcHHHHHHHHHHHHHHC-C-----CeEEEEcCchhHHHHHhh------------------------hcc------
Confidence 8999999999999999999999 8 899999988765432110 010
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
.+ ..++.++++++|+||++||+....+++.++.+.+. ..++.++
T Consensus 45 -----------------------~~--~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~-----~~~id~s 88 (152)
T d1i36a2 45 -----------------------GV--TETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR-----GIYVDIN 88 (152)
T ss_dssp -----------------------TC--EECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC-----SEEEECS
T ss_pred -----------------------cc--cccHHHHHhhcCeEEEEecCchHHHHHHhhcccCC-----ceeeccC
Confidence 12 23466788999999999999988888888776543 4555544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.15 E-value=7.2e-11 Score=98.79 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=73.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
.+|+|||.|+||.++|..|+++ | ++|++|||++++++.+.+++ .+..
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~~~---------------------~~~~------ 49 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLANE---------------------AKGT------ 49 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHHTT---------------------TTTS------
T ss_pred CcEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHHhc---------------------cccc------
Confidence 6899999999999999999999 9 99999999998876533211 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.. .......++.+++.++|.+|+++|.. .+.++++.+.+.+++ ++++|.++..
T Consensus 50 -~~-------------------~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~---g~iiid~sT~ 103 (176)
T d2pgda2 50 -KV-------------------LGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNS 103 (176)
T ss_dssp -SC-------------------EECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCC
T ss_pred -cc-------------------cchhhhhhhhhhhcccceEEEecCchHHHHHHHHHHHhcccc---CcEEEecCcc
Confidence 00 00111234556778999999999885 678899999998887 7888766533
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.08 E-value=4.1e-10 Score=93.87 Aligned_cols=154 Identities=10% Similarity=0.137 Sum_probs=93.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||.|.||.++|..|+++ | ++|++|||++++.+++.+++ ...+..
T Consensus 1 ~MkIGvIGlG~MG~~ma~~L~~~-G-----~~V~~~dr~~~~~~~l~~~~-------------------~~~~~~----- 50 (178)
T d1pgja2 1 SMDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMKAN-------------------ASAPFA----- 50 (178)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHHHT-------------------TTSTTG-----
T ss_pred CCEEEEEeehHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHHcC-------------------Cccccc-----
Confidence 38999999999999999999999 9 99999999998876543221 000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~---~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.+.....+. ...+..++.+++.+++. ....++..+...+.+ +++++..++
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iii~~st 104 (178)
T d1pgja2 51 -----------------------GNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGN 104 (178)
T ss_dssp -----------------------GGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCC
T ss_pred -----------------------cchhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccc---cceecccCc
Confidence 022233332 23456778888877665 577888888888887 778876664
Q ss_pred cCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhcC
Q 022050 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (303)
Q Consensus 199 Gi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~~ 266 (303)
..... ++.+.+.+... .+..+..|-+ +.....|. + +.++++.+..++++.+|+.
T Consensus 105 ~~~~~----------~~~~~~~l~~~--~~~~ldapv~g~~~~a~~g~-~-~mvgG~~~~~~~v~pil~~ 160 (178)
T d1pgja2 105 AHFKD----------QGRRAQQLEAA--GLRFLGMGISGGEEGARKGP-A-FFPGGTLSVWEEIRPIVEA 160 (178)
T ss_dssp CCHHH----------HHHHHHHHHTT--TCEEEEEEEESHHHHHHHCC-E-EEEEECHHHHHHHHHHHHH
T ss_pred cchhH----------HHHHHHHHhhc--ceeEecccccCCcchhcCCc-E-EEeeCCHHHHHHHHHHHHH
Confidence 43221 22344433211 1222322322 11222343 3 3456677777777777654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.86 E-value=5.4e-09 Score=88.20 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=59.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.+|..+|..|+ . | ++|+.||.+++.++.++... .|.+.++++..+..
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~-g-----~~V~g~Din~~~v~~l~~g~-----------------~p~~e~~l~~~~~~ 56 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L-Q-----NEVTIVDILPSKVDKINNGL-----------------SPIQDEYIEYYLKS 56 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T-T-----SEEEEECSCHHHHHHHHTTC-----------------CSSCCHHHHHHHHH
T ss_pred CEEEEECCChhHHHHHHHHH-C-C-----CcEEEEECCHHHHHHHhhcc-----------------cccchhhHHHHhhh
Confidence 89999999999999998776 5 7 89999999999887765321 12222222110000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~ 171 (303)
....+..+++...+..++|+++++||..
T Consensus 57 --------------------~~~~~~~~~~~~~~~~~~~ii~v~vpt~ 84 (196)
T d1dlja2 57 --------------------KQLSIKATLDSKAAYKEAELVIIATPTN 84 (196)
T ss_dssp --------------------SCCCEEEESCHHHHHHHCSEEEECCCCC
T ss_pred --------------------hhhhhhccchhhhhhhccccccccCCcc
Confidence 0025667778777888999999999884
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.72 E-value=9.2e-08 Score=77.66 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
...||+|||+|.+|+++|..++.+ |.. .++.|+|++++.++.... -++.. ..+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g~a~-----Dl~~~-----------~~~------- 57 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIGDAM-----DFNHG-----------KVF------- 57 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHHH-----HHHHH-----------TTS-------
T ss_pred CCCeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEeeccccccchhc-----cHhhC-----------ccc-------
Confidence 347999999999999999999998 732 379999999876542110 01100 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhh
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~ 185 (303)
. ..+..+.++..+++++||+||++.-. ..++++.++|.++.+
T Consensus 58 ----~------------------~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p 115 (148)
T d1ldna1 58 ----A------------------PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGF 115 (148)
T ss_dssp ----S------------------SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTC
T ss_pred ----c------------------CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 0 01233333334568999999997632 135667777777754
Q ss_pred ccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 186 ~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+++++..+|.+.. +..++.++.|.|..+
T Consensus 116 ----~a~~ivvtNPvd~----------~t~~~~k~sg~p~~r 143 (148)
T d1ldna1 116 ----QGLFLVATNPVDI----------LTYATWKFSGLPHER 143 (148)
T ss_dssp ----CSEEEECSSSHHH----------HHHHHHHHHTCCGGG
T ss_pred ----CceEEEecCccHH----------HHHHHHHHHCcChhh
Confidence 5788878876654 335566776655433
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.71 E-value=1.3e-07 Score=76.71 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=75.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.|||+|||+|.+|.++|..|+.+ |.. .++.|+|+++++++... .-++. ....
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~-~~~---~elvL~D~~~~~~~g~a-----~Dl~~--------------a~~~----- 56 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTKGDA-----LDLED--------------AQAF----- 56 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHHH-----HHHHG--------------GGGG-----
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEeecccchhHHHH-----HHHhc--------------cccc-----
Confidence 48999999999999999999998 731 48999999987543210 00110 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch----------------hHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~----------------~~~~vl~~l~~~l~~ 186 (303)
. .+....+.|.+ ++++||+||++.... .++++.++|.++.+
T Consensus 57 ---~------------------~~~~~~~~d~~-~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p- 113 (146)
T d1ez4a1 57 ---T------------------APKKIYSGEYS-DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF- 113 (146)
T ss_dssp ---S------------------CCCEEEECCGG-GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC-
T ss_pred ---c------------------CCceEeeccHH-HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC-
Confidence 0 01344567776 478999999986331 24566666666543
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCC
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~ 225 (303)
+++++..+|.... +..++.+..+.|.
T Consensus 114 ---~aivivvtNPvdv----------~t~~~~k~sg~p~ 139 (146)
T d1ez4a1 114 ---DGIFLVAANPVDI----------LTYATWKFSGFPK 139 (146)
T ss_dssp ---CSEEEECSSSHHH----------HHHHHHHHHCCCG
T ss_pred ---CcEEEEeCCccHH----------HHHHHHHHHCcCc
Confidence 5788877775543 2345666666553
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.67 E-value=3.4e-07 Score=74.74 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=81.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+.+||+|||+|.+|+.+|..++.+ +. .++.++|.+++.++.... -++. .... .
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~-~~----~el~L~D~~~~~~~g~a~-----Dl~~--------------~~~~---~ 58 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALR-EL----ADVVLYDVVKGMPEGKAL-----DLSH--------------VTSV---V 58 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEECSSSSHHHHHHH-----HHHH--------------HHHH---T
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CC----ceEEEEEeccccchhHHH-----HHhh--------------hccc---c
Confidence 458999999999999999999988 73 489999999876543110 0110 0000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC------------ch---------hHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP------------ST---------ETKEVFEEI 180 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp------------~~---------~~~~vl~~l 180 (303)
.. ...+..+++.++++++||+|+++.. +. .++++++++
T Consensus 59 ---~~------------------~~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i 117 (154)
T d1pzga1 59 ---DT------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 117 (154)
T ss_dssp ---TC------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred ---CC------------------eeEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHH
Confidence 00 0245667788888999999999772 11 356677777
Q ss_pred HHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 181 SRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 181 ~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
.++.+ +++++..+|.+..- ..++.++.|.|..+
T Consensus 118 ~~~~p----~aiviivsNPvd~l----------t~~~~~~sg~p~~r 150 (154)
T d1pzga1 118 KKYCP----KTFIIVVTNPLDCM----------VKVMCEASGVPTNM 150 (154)
T ss_dssp HHHCT----TCEEEECCSSHHHH----------HHHHHHHHCCCGGG
T ss_pred HhcCC----CcEEEEeCCcHHHH----------HHHHHHHhCcChhc
Confidence 77655 57888888876542 24566666655333
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=1.7e-07 Score=75.26 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=33.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.+|.++|..++.+ +.. .++.|+|+++++++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 39 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK-GFA---REMVLIDVDKKRAE 39 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeccccccc
Confidence 8999999999999999999998 732 47999999987654
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.61 E-value=4e-09 Score=92.72 Aligned_cols=196 Identities=16% Similarity=0.125 Sum_probs=112.6
Q ss_pred hhhHHHHHhccCCCCC-ceEEEECCCh--HHHHHHH------HHHHhcCCCCCCeeEEEEecCCchh-hhhhhhh-----
Q 022050 28 RLDELRRLMGKAEGDP-LRIVGVGAGA--WGSVFTA------MLQDSYGYLRDKVLIRIWRRPGRSV-DRATAEH----- 92 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~-~kI~VIGaG~--mG~aiA~------~La~~~G~~~~~~~V~l~~r~~~~~-~~~~~~~----- 92 (303)
|..+-....+.++..+ .++.++|+|. ||..|+. .|++. | +.|++.|-+++.+ ++.+..+
T Consensus 24 ~~~~~~~~~~~~~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~-g-----~~v~~~d~d~~~v~~~~~~g~~~i~~ 97 (242)
T d2b0ja2 24 RACEVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE-P-----GLVVIDEFDPKEVMEAHLSGNPESIM 97 (242)
T ss_dssp HHHHHHHHHTCGGGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSS-S-----EEEECCCSCHHHHHHHHHTTCGGGTH
T ss_pred HHHhhhccCCCCccceeeeeeeeeecHHhhhhchhhhhccchhhhhc-C-----CeEEEEeCCHHHHHHHHhcCCchhhc
Confidence 4444444566666443 4688999997 8878877 57888 8 8999999996543 3333221
Q ss_pred --HHHHHhhhhhHHHHhhhh-cccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 022050 93 --LFEVINSREDVLRRLIRR-CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (303)
Q Consensus 93 --l~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp 169 (303)
|.+.+++ ..++ +...++.- ..++|.+ ..+++++|+.+++++||+||+++|
T Consensus 98 p~l~~~v~~-------~~~~~~~~~~~~~-----~~~~pEe---------------~Gv~v~~d~~Eav~~ADiII~~vP 150 (242)
T d2b0ja2 98 PKIREVVKA-------KAKELPKPPKACI-----HLVHPED---------------VGLKVTSDDREAVEGADIVITWLP 150 (242)
T ss_dssp HHHHHHHHH-------HHHTSCCTTTEEE-----ESSCGGG---------------GTCEEESCHHHHHTTCSEEEECCT
T ss_pred chHHHHHHH-------HHHhccCCccchh-----hcCCHHH---------------CCCEEECCHHHHHhcCCeEEEeee
Confidence 1111111 1111 00001000 0112211 268899999999999999999997
Q ss_pred c-hhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHHHHhccCceEE
Q 022050 170 S-TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANA 248 (303)
Q Consensus 170 ~-~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ev~~g~~~~~ 248 (303)
. +.+++++++|.+++++ +++|+..+. +... ....+.+.+... .+.++.++..+-.-..+. ..+
T Consensus 151 ~~~~v~~Vi~~I~~~l~~---g~Iiid~ST-i~~~---------~~~~l~e~l~~k--gi~vi~~hp~a~pe~~g~-~li 214 (242)
T d2b0ja2 151 KGNKQPDIIKKFADAIPE---GAIVTHACT-IPTT---------KFAKIFKDLGRE--DLNITSYHPGCVPEMKGQ-VYI 214 (242)
T ss_dssp TCTTHHHHHHHHGGGSCT---TCEEEECSS-SCHH---------HHHHHHHHTTCT--TSEEEECBCSSCTTTCCC-EEE
T ss_pred cHHHHHHHHHHHHhhCCC---CcEEEecCC-CcHH---------HHHHHHHhcccC--CCEEECCCccCcCccccc-eEE
Confidence 6 5689999999999998 787765553 2322 123344555432 233333322221112332 222
Q ss_pred EE-eCChhhHHHHHHHhcCCCeEEE
Q 022050 249 RI-CGAEKWRKPLAKFLRRPHFTVW 272 (303)
Q Consensus 249 ~~-~~~~~~~~~i~~lf~~~g~~~~ 272 (303)
+. ..+++..+.+.++|+..|-.++
T Consensus 215 ~~~~aseE~iekv~elles~Gk~~~ 239 (242)
T d2b0ja2 215 AEGYASEEAVNKLYEIGKIARGKAF 239 (242)
T ss_dssp EESSSCHHHHHHHHHHHHHHHSCEE
T ss_pred ecCCCCHHHHHHHHHHHHHHCCCeE
Confidence 22 3566778888899887664443
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.60 E-value=4.3e-07 Score=72.88 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=76.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.+|+++|..++.. |.. .++.|+|++++.++.... .+.. .... ..
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~-~l~---~el~L~Di~~~~~~~~~~-----d~~~--------------~~~~---~~- 53 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK-QLA---RELVLLDVVEGIPQGKAL-----DMYE--------------SGPV---GL- 53 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSSSHHHHHHH-----HHHT--------------THHH---HT-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---ceEEEeccccccchhhhh-----hhhc--------------ccch---hc-
Confidence 8999999999999999999998 732 489999999976543110 0100 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cch--------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~~--------------~~~~vl~~l~~~l~~~ 187 (303)
. ...+..++|. +++++||+|+++. |.. .+.++.+.|.++.+
T Consensus 54 --~------------------~~~i~~~~~~-~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-- 110 (142)
T d1guza1 54 --F------------------DTKVTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-- 110 (142)
T ss_dssp --C------------------CCEEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred --c------------------cceEEecCCH-HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC--
Confidence 0 0135555665 4689999999986 221 35666677777654
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+++++..+|.+.. +..++.+..+.|..+
T Consensus 111 --~aivivvtNPvd~----------~~~~~~~~sg~p~~r 138 (142)
T d1guza1 111 --NPIIIVVSNPLDI----------MTHVAWVRSGLPKER 138 (142)
T ss_dssp --SCEEEECCSSHHH----------HHHHHHHHHCSCGGG
T ss_pred --CeEEEEecCChHH----------HHHHHHHHhCCChHh
Confidence 5788878876543 234556665554333
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.57 E-value=3.1e-07 Score=73.97 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=76.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
|||+|||+|.+|+++|..++.+ |.. .++.|+|++++.++. +.+ -++. .....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~g---~al--Dl~~-------------~~~~~------ 52 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVG---EAM--DLAH-------------AAAGI------ 52 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHH---HHH--HHHH-------------HHHTT------
T ss_pred CEEEEECcCHHHHHHHHHHHhc-CcC---ceEEEEecccchhhH---HHH--HHhh-------------hcccc------
Confidence 8999999999999999999998 743 379999999876532 100 0110 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~~ 187 (303)
.. ...+..++|.+ +++++|+|+++.-. ..++++.+++.++.+
T Consensus 53 -~~------------------~~~i~~~~d~~-~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-- 110 (142)
T d1ojua1 53 -DK------------------YPKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (142)
T ss_dssp -TC------------------CCEEEEESCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred -CC------------------CCccccCCCHH-HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC--
Confidence 00 01456667764 68999999998731 124445555555533
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+++++..+|.+..- ..++.++.+.|.++
T Consensus 111 --~aivivvtNPvD~~----------t~~~~k~sg~p~~r 138 (142)
T d1ojua1 111 --ESKILVVTNPMDVM----------TYIMWKESGKPRNE 138 (142)
T ss_dssp --TCEEEECSSSHHHH----------HHHHHHHSCCCTTS
T ss_pred --CcEEEEecCChHHH----------HHHHHHHHCCChhc
Confidence 57888888865432 24456666554333
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.56 E-value=4.8e-07 Score=73.21 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=33.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+||+|||+|.+|+++|..++.. |.. .++.|+|+++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~ 40 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ-GVA---DDYVFIDANEAKVK 40 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEecccchhh
Confidence 7999999999999999999998 732 47999999987654
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=1.9e-07 Score=75.85 Aligned_cols=142 Identities=21% Similarity=0.251 Sum_probs=83.9
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (303)
||+|||.|+||..+|..|.++ | +. ++|+|+.++.++.. ...
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~-g-----~~-~~~~~~~~~~~~~~-------------------------~~~------- 42 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR-F-----PT-LVWNRTFEKALRHQ-------------------------EEF------- 42 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT-S-----CE-EEECSSTHHHHHHH-------------------------HHH-------
T ss_pred eEEEEeHHHHHHHHHHHHHhC-C-----CE-EEEeCCHHHHHHHH-------------------------HHc-------
Confidence 799999999999999999988 7 64 47888876543211 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHHHHHHHHhhccCCCCEEEEeeccCccc
Q 022050 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (303)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~ 203 (303)
.. .... .+.+.++|++|+++|.. .+..+...+...+.+ +++++.++ ...++
T Consensus 43 ----------------------~~-~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~---~~~iid~s-T~~p~ 94 (156)
T d2cvza2 43 ----------------------GS-EAVP-LERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDAT-SGEPE 94 (156)
T ss_dssp ----------------------CC-EECC-GGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECS-CCCHH
T ss_pred ----------------------CC-cccc-cccccceeEEEecccchhhhhhhhccccccccc---cccccccc-cCCHH
Confidence 01 1122 23466899999999886 455666666666665 66666444 33332
Q ss_pred cccccccCCHHHHHHhHhCCCCccEEEEeCCCc--HHHHhccCceEEEEeCChhhHHHHHHHhc
Q 022050 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYNKEYANARICGAEKWRKPLAKFLR 265 (303)
Q Consensus 204 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~--a~ev~~g~~~~~~~~~~~~~~~~i~~lf~ 265 (303)
. .+.+.+.+... .+..+..|-. +.....|... +.++++.+..+.++.+|+
T Consensus 95 ~---------~~~~~~~~~~~--gi~~ldapVsGg~~~A~~G~L~-~~vgG~~~~~~~~~p~L~ 146 (156)
T d2cvza2 95 A---------SRRLAERLREK--GVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFLA 146 (156)
T ss_dssp H---------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGCT
T ss_pred H---------HHHHHHHHHHc--CCeEEeccccCchhhhccCCEE-EEEeCCHHHHHHHHHHHH
Confidence 1 12344444211 2334444443 2233345433 345778888888888773
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.55 E-value=5.8e-07 Score=72.49 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=77.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
+.||+|||+|.+|+++|..++.+ |.. .++.|+|++++.++. + .+. +.+..
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~-~l~---~ElvL~D~~~~~~~g---~----a~D---------------l~~a~---- 50 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQR-GIA---REIVLEDIAKERVEA---E----VLD---------------MQHGS---- 50 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHHH---H----HHH---------------HHHTG----
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccccchh---H----HHH---------------HHhcc----
Confidence 46999999999999999999998 732 379999999876532 1 010 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~ 186 (303)
.+ ..+ ..+..+++.+ ++++||+|+++.-. ..++++.++|.++.+
T Consensus 51 --~~----------~~~------~~i~~~~~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p- 110 (143)
T d1llda1 51 --SF----------YPT------VSIDGSDDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP- 110 (143)
T ss_dssp --GG----------STT------CEEEEESCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred --cc----------CCC------ceeecCCCHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCC-
Confidence 00 000 1344556665 57899999998722 135556666666644
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+++++..+|.+.. +..++.++.|.|..+
T Consensus 111 ---~ai~ivvtNPvDv----------mt~~~~~~sg~p~~r 138 (143)
T d1llda1 111 ---NAIYMLITNPVDI----------ATHVAQKLTGLPENQ 138 (143)
T ss_dssp ---TSEEEECCSSHHH----------HHHHHHHHHTCCTTS
T ss_pred ---CeEEEEeCCchHH----------HHHHHHHHHCCChhh
Confidence 5788878876554 335566776655433
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.53 E-value=2.8e-07 Score=76.49 Aligned_cols=82 Identities=21% Similarity=0.189 Sum_probs=52.4
Q ss_pred CceEEEECCChHHHHHHH--HHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~--~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
.|||+|||+|++|.+.+. .++.. ..+.. .++.|+|+++++++..... ++. ..+..
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~-~~l~~-~eivL~Did~~~~~~~~~~-----~~~-------------~~~~~--- 58 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKT-PGLSG-STVTLMDIDEERLDAILTI-----AKK-------------YVEEV--- 58 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC-GGGTT-CEEEEECSCHHHHHHHHHH-----HHH-------------HHHHT---
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhc-cccCC-CEEEEEeCCchHHHHHHHH-----HHH-------------HHHhc---
Confidence 599999999999987543 34432 11111 5899999999877542111 110 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp 169 (303)
.. ..++..++|.++++++||+|+.++-
T Consensus 59 ----~~------------------~~~i~~~td~~eaL~dad~Vv~~~~ 85 (171)
T d1obba1 59 ----GA------------------DLKFEKTMNLDDVIIDADFVINTAM 85 (171)
T ss_dssp ----TC------------------CCEEEEESCHHHHHTTCSEEEECCC
T ss_pred ----CC------------------CeEEEEeCChhhcccCCCeEeeecc
Confidence 00 0257788999999999999999864
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.50 E-value=1.2e-06 Score=70.41 Aligned_cols=119 Identities=17% Similarity=0.164 Sum_probs=75.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~ 123 (303)
+||+|||+|.+|+++|..|+.+ +. .++.++|.+++..+... ..-. +..... +
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~-~l----~dl~l~D~~~~~~~~~~-------~Dl~------------~~~~~~---~- 53 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK-EL----GDIVLLDIVEGVPQGKA-------LDLY------------EASPIE---G- 53 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSSSSHHHHHH-------HHHH------------TTHHHH---T-
T ss_pred CeEEEECCCHHHHHHHHHHHhC-Cc----ceEEEEeeccccchhHH-------HHhh------------cccccc---C-
Confidence 6999999999999999999998 73 47999999987654211 1100 000000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--h--------------hHHHHHHHHHHHhhcc
Q 022050 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T--------------ETKEVFEEISRYWKER 187 (303)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~--~--------------~~~~vl~~l~~~l~~~ 187 (303)
. ...+..+.|.++ ++++|+||++.-. + .++++.++|.++.+
T Consensus 54 --~------------------~~~i~~~~d~~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-- 110 (142)
T d1uxja1 54 --F------------------DVRVTGTNNYAD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-- 110 (142)
T ss_dssp --C------------------CCCEEEESCGGG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT--
T ss_pred --C------------------CCEEEecCcHHH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC--
Confidence 0 024666778765 7899999998832 1 24556666666543
Q ss_pred CCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCC
Q 022050 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (303)
Q Consensus 188 ~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~ 225 (303)
+++++..+|.+.. +..++.+..|.|.
T Consensus 111 --~aivivvtNPvDv----------~t~~~~~~sglp~ 136 (142)
T d1uxja1 111 --NAVIIMVNNPLDA----------MTYLAAEVSGFPK 136 (142)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHHCCCG
T ss_pred --CceEEEeCCchHH----------HHHHHHHHHCcCc
Confidence 5788888876654 2244556656543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.48 E-value=9.1e-07 Score=71.16 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=31.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.||+|||+|.+|+++|..++.+ +.. .++.|+|++++.++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~D~~~~~~~ 40 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAI 40 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CC
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeccCCccc
Confidence 6899999999999999999998 732 37999999997654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.38 E-value=2.6e-06 Score=69.86 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=76.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
..||+|||+|.+|+++|..++.. |.. .++.|+|++++.++. +. .-++. ....
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~---~ElvLiD~~~~~a~g---~a--lDl~h-----------~~~~-------- 71 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGK-SLA---DELALVDVLEDKLKG---EM--MDLQH-----------GSLF-------- 71 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHH---HH--HHHHH-----------TGGG--------
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccchhHH---HH--HHHhc-----------cccc--------
Confidence 36999999999999999999998 732 379999999876532 10 00110 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------hhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------~~~~~vl~~l~~~l~~ 186 (303)
.+ .+.+....|. +.+++||+|+++.-. ..++++.++|+++.+
T Consensus 72 ---~~-----------------~~~~~~~~d~-~~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p- 129 (160)
T d1i0za1 72 ---LQ-----------------TPKIVADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP- 129 (160)
T ss_dssp ---CC-----------------CSEEEECSSG-GGGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-
T ss_pred ---cC-----------------CCeEEeccch-hhcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 00 0123334555 458999999997622 135666677776543
Q ss_pred cCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCcc
Q 022050 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~ 227 (303)
+++++..+|.+.. +..++.+..|.|..+
T Consensus 130 ---~aiiivvtNPvDv----------~t~~~~k~sglp~~r 157 (160)
T d1i0za1 130 ---DCIIIVVSNPVDI----------LTYVTWKLSGLPKHR 157 (160)
T ss_dssp ---TCEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred ---CcEEEEeCCchHH----------HHHHHHHHHCcCccc
Confidence 5788888877654 234566666655333
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.35 E-value=4.7e-06 Score=67.52 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+||+|||+|.+|+++|..++.+ +. .++.|+|++++.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~-~l----~el~L~Di~~~~~~ 41 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQK-NL----GDVVLFDIVKNMPH 41 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECSSSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeccCCcce
Confidence 47999999999999999988887 62 47999999987654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.29 E-value=2.8e-06 Score=70.07 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCceEEEECCChHHHHHH--HHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFT--AMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA--~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
+..||+|||+|+.|...+ ..++.. -.++- .++.|+|.++++++... ..++. +....
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~-~~l~~-~eivL~Did~~~~~~~~-----~~~~~-------------~~~~~-- 59 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHL-EEFPI-RKLKLYDNDKERQDRIA-----GACDV-------------FIREK-- 59 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTT-TTSCE-EEEEEECSCHHHHHHHH-----HHHHH-------------HHHHH--
T ss_pred CCceEEEECCChhhhHHHHHHHHhhh-hhcCC-CEEEEEcCChhHHHHHH-----HHHHH-------------HHHHh--
Confidence 347999999999887644 333322 11111 48999999998765311 11111 11110
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----------------------------
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------------------- 170 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~----------------------------- 170 (303)
.. ...+..++|..+++++||+||++.-.
T Consensus 60 -----~~------------------~~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~ 116 (167)
T d1u8xx1 60 -----AP------------------DIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116 (167)
T ss_dssp -----CT------------------TSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHH
T ss_pred -----CC------------------CcceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcch
Confidence 00 02577889999999999999999733
Q ss_pred -------hhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhC
Q 022050 171 -------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (303)
Q Consensus 171 -------~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~ 222 (303)
..+.++++.+.++.+ +++++..+|.+.. +.+.+.+++|
T Consensus 117 ~~~~r~i~ii~~i~~~i~~~~P----~A~li~~TNPvdv----------~t~~~~k~~P 161 (167)
T d1u8xx1 117 AYGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI----------VAEATRRLRP 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH----------HHHHHHHHST
T ss_pred heehhhHHHHHHHHHHHHhhCC----CeEEEEeCCHHHH----------HHHHHHHHCC
Confidence 124566677777654 5788888887654 2355666664
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.26 E-value=2.8e-06 Score=70.11 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=39.6
Q ss_pred CeEEecCHHHHhcCCCEEEEecCch------------------------------------hHHHHHHHHHHHhhccCCC
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV 190 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~------------------------------------~~~~vl~~l~~~l~~~~~~ 190 (303)
++..++|..+++++||+||++.... .+.++.+++.++.+ +
T Consensus 64 ~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~p----d 139 (169)
T d1s6ya1 64 EIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP----D 139 (169)
T ss_dssp EEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT----T
T ss_pred eeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCC----C
Confidence 5678899989999999999998532 14667777777654 6
Q ss_pred CEEEEeeccCcc
Q 022050 191 PVIISLAKGVEA 202 (303)
Q Consensus 191 ~iivs~~nGi~~ 202 (303)
++++..+|.+..
T Consensus 140 a~~i~vtNPvdv 151 (169)
T d1s6ya1 140 AWLINFTNPAGM 151 (169)
T ss_dssp CEEEECSSSHHH
T ss_pred eEEEEeCChHHH
Confidence 888888887654
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.24 E-value=1.1e-05 Score=64.91 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=31.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||+|||| |.+|.++|..++.. |.. .++.|+|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~-~l~---~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-Ccc---cccccccchhh
Confidence 89999996 99999999999988 732 48999999864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.22 E-value=2.6e-06 Score=69.73 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=34.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
...||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~-~l~---~elvL~D~~~~~a~ 58 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLK-GLA---DELALVDADTDKLR 58 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT-TSC---SEEEEECSCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCchhhh
Confidence 346999999999999999999988 732 37999999987553
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.20 E-value=9.7e-07 Score=71.43 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=35.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+||.|||||.||..+|..|+++ | ++|++|+|+.+++++
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~-g-----~~V~v~dr~~~~a~~ 40 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAKK 40 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECChHHHHH
Confidence 37999999999999999999999 8 999999999987764
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.18 E-value=2.5e-06 Score=68.69 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=67.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
.||+|||| |.+|+++|..|+.+ |.. .++.++|.++.+.+... ++ +..
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~-~~~---~elvLiDi~~~~~~a~D-------l~---------------~~~------ 48 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHTPGVAAD-------LS---------------HIE------ 48 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSHHHHHHH-------HT---------------TSS------
T ss_pred CeEEEECCCChHHHHHHHHHHhC-Ccc---ceEEEEeccccchhhHH-------Hh---------------hhh------
Confidence 38999996 99999999999988 743 37999999865332110 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHHHhhc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRYWKE 186 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~--------------~~~~~vl~~l~~~l~~ 186 (303)
.+.+ .......++..+++++||+||++-- . ..++++.+++.++.+
T Consensus 49 --~~~~----------------~~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p- 109 (144)
T d1mlda1 49 --TRAT----------------VKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP- 109 (144)
T ss_dssp --SSCE----------------EEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-
T ss_pred --hhcC----------------CCeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-
Confidence 0000 0011123556677899999999752 2 146677777777743
Q ss_pred cCCCCEEEEeeccCcc
Q 022050 187 RITVPVIISLAKGVEA 202 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~ 202 (303)
+++++..+|.+..
T Consensus 110 ---~~iiivvtNPvD~ 122 (144)
T d1mlda1 110 ---DAMICIISNPVNS 122 (144)
T ss_dssp ---TSEEEECSSCHHH
T ss_pred ---CeEEEEecCchhh
Confidence 5788888887663
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=4.2e-06 Score=68.46 Aligned_cols=80 Identities=18% Similarity=0.094 Sum_probs=50.8
Q ss_pred ceEEEECCChHHHHHHHH-HHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 44 LRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~-La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
|||+|||+|+.|.+.+.. +++....+. ..++.|+|.++++++.... +.. .....
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~-~~el~L~Did~~k~~~~~d------~~~-------------~~~~~----- 55 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVR-IDEVIFYDIDEEKQKIVVD------FVK-------------RLVKD----- 55 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSC-CCEEEEECSCHHHHHHHHH------HHH-------------HHHTT-----
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccC-ccEEEEEecCcHHHHHHHH------HHH-------------hhhcc-----
Confidence 899999999998887754 333211011 1489999999886543110 000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~ 170 (303)
. .++.++++..+++++||+||++.-.
T Consensus 56 --~--------------------~~~~~t~~~~~~l~~aDvVVita~~ 81 (162)
T d1up7a1 56 --R--------------------FKVLISDTFEGAVVDAKYVIFQFRP 81 (162)
T ss_dssp --S--------------------SEEEECSSHHHHHTTCSEEEECCCT
T ss_pred --C--------------------ceEEEecCcccccCCCCEEEEeccc
Confidence 0 2466788888999999999998743
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.15 E-value=3e-06 Score=66.50 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=35.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|||.|+|+|.+|..+|..|.+. | ++|++++.+++.+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~ 38 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK 38 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CCcceecCChhhhhh
Confidence 8999999999999999999998 8 999999999987764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=3.2e-06 Score=66.16 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=35.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|+|+|.+|..+|..|.+. | ++|++++.+++.++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~-g-----~~vvvid~d~~~~~~~ 39 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVNAY 39 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEecCcHHHHHHH
Confidence 5789999999999999999998 8 9999999999877653
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.11 E-value=1.2e-05 Score=65.05 Aligned_cols=113 Identities=14% Similarity=0.140 Sum_probs=66.9
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCC--CCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~--~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
++|||+|||| |.+|+++|..|+.. +.+. ...++.++|.++..... +++. +. +...
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~-~~~~~~~~~~L~l~d~~~~~~~~---~~l~--~~---------------~~~~- 59 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITPMMGVL---DGVL--ME---------------LQDC- 59 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGGGHHHH---HHHH--HH---------------HHHT-
T ss_pred CceEEEEECCCCHHHHHHHHHHHHH-HhcCCCCccEEEEecCccchhhh---hhhh--hh---------------hccc-
Confidence 5799999996 99999999999875 4332 11356667666532211 1110 00 0000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------hhHHHHHHHHHH
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISR 182 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp--~--------------~~~~~vl~~l~~ 182 (303)
.++ ....+...++..++.+++|+||++-- . ..++++.++|.+
T Consensus 60 ------~~~----------------~~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k 117 (154)
T d5mdha1 60 ------ALP----------------LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDK 117 (154)
T ss_dssp ------CCT----------------TEEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred ------ccc----------------cccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHh
Confidence 000 00145667888889999999999762 1 135666666666
Q ss_pred HhhccCCCCEEEEeeccCc
Q 022050 183 YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~ 201 (303)
+.++ +.+++..+|.+.
T Consensus 118 ~a~~---~~~iivvsNPvD 133 (154)
T d5mdha1 118 YAKK---SVKVIVVGNPAN 133 (154)
T ss_dssp HSCT---TCEEEECSSSHH
T ss_pred hCCC---ceEEEEecCcHH
Confidence 6554 445566666543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.00 E-value=2.9e-06 Score=70.82 Aligned_cols=92 Identities=18% Similarity=0.313 Sum_probs=65.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|+|++...
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~-g-----~~v~~~d~~~~~~------------------------------------ 78 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPKEG------------------------------------ 78 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCCCS------------------------------------
T ss_pred cCceEEEeccccccccceeeeecc-c-----ccccccccccccc------------------------------------
Confidence 347999999999999999999876 8 8999999875311
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
......++++.+++||+|++++|-.. ...++ ++....+++ ++++|.+..|
T Consensus 79 -------------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~---~ailIN~~RG 130 (181)
T d1qp8a1 79 -------------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRA 130 (181)
T ss_dssp -------------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred -------------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccc---cceEEecccc
Confidence 00112457788999999999998852 23333 233344566 7899988877
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 131 ~ivd 134 (181)
T d1qp8a1 131 EVLD 134 (181)
T ss_dssp GGBC
T ss_pred cccc
Confidence 4443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.90 E-value=1.3e-05 Score=65.25 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=41.7
Q ss_pred hhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 28 ~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++-.++.++.. ..+||.|||+|.||..++..|... |. .+++++.|+.++.++
T Consensus 11 Av~la~~~~~~l--~~~~ilviGaG~~g~~v~~~L~~~-g~----~~i~v~nRt~~ka~~ 63 (159)
T d1gpja2 11 AVELAERELGSL--HDKTVLVVGAGEMGKTVAKSLVDR-GV----RAVLVANRTYERAVE 63 (159)
T ss_dssp HHHHHHHHHSCC--TTCEEEEESCCHHHHHHHHHHHHH-CC----SEEEEECSSHHHHHH
T ss_pred HHHHHHHHhCCc--ccCeEEEECCCHHHHHHHHHHHhc-CC----cEEEEEcCcHHHHHH
Confidence 455556666633 458999999999999999999998 82 479999999876654
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=3.4e-05 Score=62.30 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=60.6
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeE-EEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V-~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
+|||+|||+|.||.. ....+... . +.++ .++++++++.+.+.+ ..
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~-~----~~~i~~v~d~~~~~~~~~~~-------------------------~~--- 47 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAA-S----DWTLQGAWSPTRAKALPICE-------------------------SW--- 47 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSC-S----SEEEEEEECSSCTTHHHHHH-------------------------HH---
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEEechhHhhhhhhh-------------------------cc---
Confidence 489999999999975 45555543 2 1554 478898876543110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
++...++.++..++.|+|++++|+....++..+... . +..| -+-|.+
T Consensus 48 --------------------------~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~---~---gk~V-~~EKPl 94 (164)
T d1tlta1 48 --------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLN---A---GVHV-CVDKPL 94 (164)
T ss_dssp --------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHH---T---TCEE-EEESSS
T ss_pred --------------------------cccccccchhhhhhcccccccccchhcccccccccc---c---ccee-eccccc
Confidence 122345666777899999999999877777666543 2 3443 356655
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 95 a~~ 97 (164)
T d1tlta1 95 AEN 97 (164)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=4.1e-05 Score=61.42 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.4
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+||| +|.+|+++|..|+...+.. .++.++|.++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~---~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG---SELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT---CEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCC---cEEEEecccc
Confidence 8999999 5999999999886541311 5899999865
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.86 E-value=0.00011 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred ceEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.||+||| +|.+|+++|..++.+ |.. .++.|+|.+.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~-~l~---~el~L~Di~~ 36 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPD 36 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 3899999 699999999999998 732 3799999753
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.86 E-value=0.0001 Score=59.26 Aligned_cols=53 Identities=15% Similarity=0.072 Sum_probs=36.5
Q ss_pred CeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 147 PLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.+..+++..++++++|+||++- |. ..++++.++|..+.++ +.+++..+|.+..
T Consensus 67 ~~~~~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~---~~~vivvsNPvDv 135 (154)
T d1y7ta1 67 GLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK---DVKVLVVGNPANT 135 (154)
T ss_dssp EEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHHH
T ss_pred ccccCCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCC---CcEEEEecCcHHH
Confidence 4566777888899999999976 21 1355666667666655 6777777775543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.83 E-value=2.4e-05 Score=65.22 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
..-++|+|+|+|.+|..+|..+..- | .+|..|++....... ...
T Consensus 42 l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~---- 85 (188)
T d2naca1 42 LEAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKE---- 85 (188)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHH----
T ss_pred ccccceeeccccccchhhhhhhhcc-C-----ceEEEEeeccccccc--------------------------ccc----
Confidence 3458999999999999999999776 7 799999987532111 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~n 198 (303)
..+....++.+.+++||+|++++|-.. .+.++ ++....+++ ++++|.+..
T Consensus 86 -------------------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~---ga~lIN~aR 137 (188)
T d2naca1 86 -------------------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTAR 137 (188)
T ss_dssp -------------------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECSC
T ss_pred -------------------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCC---CCEEEecCc
Confidence 023345678888999999999998753 33333 233344566 789998888
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|=..+
T Consensus 138 G~ivd 142 (188)
T d2naca1 138 GKLCD 142 (188)
T ss_dssp GGGBC
T ss_pred hhhhh
Confidence 75544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=2.2e-05 Score=65.53 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=67.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
+...++|+|+|.|.+|..+|..+..- | .+|..|++...... .
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~----------------------------~---- 82 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLPL----------------------------G---- 82 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCC----------------------------T----
T ss_pred cccceEEEEeecccchhhhhhhcccc-c-----ceEeeccccccchh----------------------------h----
Confidence 34458999999999999999988765 7 89999998653110 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCch-hHHHHH-HHHHHHhhccCCCCEEEEee
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~-~~~~vl-~~l~~~l~~~~~~~iivs~~ 197 (303)
......++++.++.||+|++++|-. ....++ ++....+++ ++++|.+.
T Consensus 83 ---------------------------~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~---~a~lIN~a 132 (188)
T d1sc6a1 83 ---------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINAS 132 (188)
T ss_dssp ---------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCC---CCEEEEcC
Confidence 1122346888889999999999864 233333 333344566 78999888
Q ss_pred ccCccc
Q 022050 198 KGVEAE 203 (303)
Q Consensus 198 nGi~~~ 203 (303)
.|=..+
T Consensus 133 RG~lvd 138 (188)
T d1sc6a1 133 RGTVVD 138 (188)
T ss_dssp CSSSBC
T ss_pred cHHhhh
Confidence 875544
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=8.7e-05 Score=60.88 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.+||+|||+|.||...+..+... . +.+|+ ++++++++.+...++ +
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~~~~---------------------~-------- 46 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFATA---------------------N-------- 46 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHHH---------------------T--------
T ss_pred CeEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccchhc---------------------c--------
Confidence 37999999999999999888765 3 15665 678887655431100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~--~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
.++ ...++.+|.++.+ .+.|+|++++|+....+.+.... +. +..|+ +-|.
T Consensus 47 ---~~~------------------~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l---~~---g~~v~-~EKP 98 (184)
T d1ydwa1 47 ---NYP------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAA---EK---GKHIL-LEKP 98 (184)
T ss_dssp ---TCC------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---TT---TCEEE-ECSS
T ss_pred ---ccc------------------cceeecCcHHHhhhccccceeeecccchhhcchhhhhh---hc---cceee-cccc
Confidence 000 1355678888866 46799999999997766665543 33 44433 5555
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+..
T Consensus 99 ~~~ 101 (184)
T d1ydwa1 99 VAM 101 (184)
T ss_dssp CSS
T ss_pred ccc
Confidence 544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.72 E-value=5.5e-05 Score=61.69 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=56.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
++||+|+|+|.||..++..+.+. . +.+++ +++++++....
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~-~----~~elvav~~~~~~~~~~---------------------------------- 43 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRATLDTK---------------------------------- 43 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSCCSSS----------------------------------
T ss_pred cceEEEECChHHHHHHHHHHHhC-C----CcEEEEEEecccccccc----------------------------------
Confidence 47899999999999999988765 2 15544 66776543210
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
.......+..+...+.|+|++++|+....++..+. +.. +..+|...+
T Consensus 44 ------------------------~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~a---L~a---G~~vv~~~~ 90 (170)
T d1f06a1 44 ------------------------TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPK---FAQ---FACTVDTYD 90 (170)
T ss_dssp ------------------------SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHH---HTT---TSEEECCCC
T ss_pred ------------------------cccccchhhhhhccccceEEEeCCCcccHHHHHHH---HHC---CCcEEEecC
Confidence 02333445555667899999999999765555443 444 555554443
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.71 E-value=2.8e-05 Score=65.28 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-++|+|||.|.+|..+|..+..- | .+|..|++....-.. ..
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~---------------------------~~----- 89 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGVE---------------------------RA----- 89 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTHH---------------------------HH-----
T ss_pred eCceEEEeccccccccceeeeecc-c-----cceeeccCcccccch---------------------------hh-----
Confidence 347999999999999999999765 7 899999987542110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeecc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nG 199 (303)
..+....++++.++.||+|++++|-.. ...++ ++....+++ ++++|.+..|
T Consensus 90 ------------------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG 142 (193)
T d1mx3a1 90 ------------------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTARG 142 (193)
T ss_dssp ------------------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECSCT
T ss_pred ------------------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCC---CCeEEecCCc
Confidence 023345678888999999999998642 22222 223334566 7889988887
Q ss_pred Cccc
Q 022050 200 VEAE 203 (303)
Q Consensus 200 i~~~ 203 (303)
=..+
T Consensus 143 ~ivd 146 (193)
T d1mx3a1 143 GLVD 146 (193)
T ss_dssp TSBC
T ss_pred eEEc
Confidence 5554
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.71 E-value=1.9e-05 Score=66.65 Aligned_cols=94 Identities=19% Similarity=0.245 Sum_probs=64.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++....... ..
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~f-g-----~~V~~~d~~~~~~~~--------------------------~~------- 83 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPELE--------------------------KK------- 83 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH--------------------------HT-------
T ss_pred CCeEEEecccccchhHHHhHhhh-c-----ccccccCcccccccc--------------------------cc-------
Confidence 37999999999999999999765 7 899999987542110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.. ...++++.+++||+|++++|-.. .+.++ ++....+++ ++++|.+..|=
T Consensus 84 ------------------------~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~ 135 (197)
T d1j4aa1 84 ------------------------GY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGP 135 (197)
T ss_dssp ------------------------TC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------ee-eeccccccccccccccccCCccccccccccHHHHhhhCC---ccEEEecCchh
Confidence 01 12467788899999999998642 22222 222334566 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 136 ivd 138 (197)
T d1j4aa1 136 LVD 138 (197)
T ss_dssp GBC
T ss_pred hhh
Confidence 554
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.70 E-value=2.4e-05 Score=65.90 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=65.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++...... ..
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~---------------------------~~------- 84 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKGD---------------------------HP------- 84 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSC---------------------------CT-------
T ss_pred ceeeeeeeccccccccccccccc-c-----eeeeccCCccchhh---------------------------hc-------
Confidence 47999999999999999999765 7 89999998754210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.... .++++.++.||+|++++|... .+.++ ++....+++ ++++|.+..|=
T Consensus 85 ------------------------~~~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~ 136 (199)
T d1dxya1 85 ------------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARPN 136 (199)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCTT
T ss_pred ------------------------chhH-HHHHHHHHhcccceeeecccccccccccHHHhhccCC---ceEEEecccHh
Confidence 1222 367788899999999998752 22222 223334566 78888888775
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 137 vvd 139 (199)
T d1dxya1 137 LID 139 (199)
T ss_dssp SBC
T ss_pred hhh
Confidence 554
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.70 E-value=0.00038 Score=57.23 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=68.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCC--CeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~--~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
++.||+|+|| |.+|..++..|+.. ..|-. ..++.++|.++..- .+ +++.-.+ .+.
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~~-~l--~g~~mdl-----------------~d~- 80 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSFQ-AL--EGVAMEL-----------------EDS- 80 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGHH-HH--HHHHHHH-----------------HTT-
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCccccc-hh--cchhhhh-----------------ccc-
Confidence 4579999997 99999999999975 43311 13566667665321 10 1110000 000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------hhHHHHHHHHHH
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISR 182 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaV--p~--------------~~~~~vl~~l~~ 182 (303)
.++ .......+++..++.+++|+||++- |. ..++++.++|.+
T Consensus 81 ------a~~----------------~~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~ 138 (175)
T d7mdha1 81 ------LYP----------------LLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNA 138 (175)
T ss_dssp ------TCT----------------TEEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------ccc----------------cccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0024667788889999999999976 21 135666677777
Q ss_pred HhhccCCCCEEEEeeccCc
Q 022050 183 YWKERITVPVIISLAKGVE 201 (303)
Q Consensus 183 ~l~~~~~~~iivs~~nGi~ 201 (303)
+.++ ++.|+..+|.+.
T Consensus 139 ~a~~---~~~vlvv~NPvd 154 (175)
T d7mdha1 139 VASK---NVKVLVVGNPCN 154 (175)
T ss_dssp HSCT---TCEEEECSSSHH
T ss_pred hCCC---CcEEEEecCcHH
Confidence 7665 677777777544
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.67 E-value=6.6e-05 Score=60.74 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=28.4
Q ss_pred ceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
|||+|||+|.||.. ....+... + +.++.+++++++..+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~----~~~~~~~d~~~~~~~ 40 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-P----DIELVLCTRNPKVLG 40 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-T----TEEEEEECSCHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEECCHHHHH
Confidence 79999999999976 45556554 3 267788998877654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.64 E-value=3.6e-05 Score=64.44 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=67.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhhc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~ 122 (303)
-++|+|||.|.+|..+|..+..- | .+|..|++.....+. ...
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~-------------------------~~~------- 88 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSD-------------------------EAS------- 88 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH-------------------------HHH-------
T ss_pred ccceEEeecccchHHHHHHHHhh-c-----cccccccccccccch-------------------------hhc-------
Confidence 48999999999999999988766 7 899999987643211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeeccC
Q 022050 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~nGi 200 (303)
.......++++.++.||+|++++|-.. .+.++ ++....+++ ++++|.+..|=
T Consensus 89 -----------------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~ 142 (191)
T d1gdha1 89 -----------------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTARGD 142 (191)
T ss_dssp -----------------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred -----------------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCC---ccEEEecCCcc
Confidence 012233568888999999999998852 33333 233344666 78999888885
Q ss_pred ccc
Q 022050 201 EAE 203 (303)
Q Consensus 201 ~~~ 203 (303)
..+
T Consensus 143 ivd 145 (191)
T d1gdha1 143 LVD 145 (191)
T ss_dssp GBC
T ss_pred chh
Confidence 554
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=0.00027 Score=55.23 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=41.5
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCccEEEEeCCCcHH
Q 022050 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS 238 (303)
Q Consensus 159 ~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~~GP~~a~ 238 (303)
.++|+||=.+.|..+.+.++....+ +..+|+-|.|++.+. .+.+.+... ...++..||++.
T Consensus 40 ~~~DVvIDFS~p~~~~~~l~~~~~~------~~p~ViGTTG~~~~~---------~~~i~~~ak----~~pv~~a~N~s~ 100 (128)
T d1vm6a3 40 DSPDVVIDFSSPEALPKTVDLCKKY------RAGLVLGTTALKEEH---------LQMLRELSK----EVPVVQAYSRTV 100 (128)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHH------TCEEEECCCSCCHHH---------HHHHHHHTT----TSEEEECSCTHH
T ss_pred ccCCEEEEecCHHHHHHHHHHHHhc------CCCEEEEcCCCCHHH---------HHHHHHHHh----hCCEEeeeccCh
Confidence 4689999999999888888775543 567888888987652 133454432 134667778764
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.55 E-value=0.00011 Score=62.45 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=69.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCC-CCCCeeEEEEecCCc-hhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~-~~~~~~V~l~~r~~~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.++||+|||.|+=|.+-|.-|-.+ |. .-.+.+|++--|... +.++..+
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDS-G~~~~sgv~V~VGLr~gs~S~~kA~~----------------------------- 92 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDS-LTEAKSDVVVKIGLRKGSNSFAEARA----------------------------- 92 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHH-HHHTTCCCEEEEEECTTCSCHHHHHH-----------------------------
T ss_pred CCCEEEEEEeccHHHHHHHhChhh-cccccCCceEEEEeCCCChhHHHHHH-----------------------------
Confidence 457999999999999999999996 50 000034766655542 2222111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeecc
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nG 199 (303)
+||.. .+..+ -+..||++.||+|++.+|.....+++++|.+++++ ++.+ ..+-|
T Consensus 93 --------------dGf~v-------~~~~v-~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~---G~~L-~FaHG 146 (226)
T d1qmga2 93 --------------AGFSE-------ENGTL-GDMWETISGSDLVLLLISDSAQADNYEKVFSHMKP---NSIL-GLSHG 146 (226)
T ss_dssp --------------TTCCG-------GGTCE-EEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCT---TCEE-EESSS
T ss_pred --------------cCCcc-------CCCcc-cCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCC---Ccee-eecch
Confidence 11110 01112 24667899999999999999999999999999998 6654 45555
Q ss_pred Ccc
Q 022050 200 VEA 202 (303)
Q Consensus 200 i~~ 202 (303)
+..
T Consensus 147 FnI 149 (226)
T d1qmga2 147 FLL 149 (226)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=0.00037 Score=56.95 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=60.4
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
++||+|||+|.||.. .+..+.+. + +..+|+ ++++++++.+.+.. ..
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~~~~-------------------------~~--- 50 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAK-------------------------MV--- 50 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHH-------------------------HH---
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhhhhc-------------------------cc---
Confidence 378999999999986 46566543 2 114554 78888765543110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
......+|.++.++ +.|+|++++|+....+++.++... +..|+ +-|
T Consensus 51 -------------------------~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~al~~------gk~V~-~EK 98 (181)
T d1zh8a1 51 -------------------------GNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRK------GVHVI-CEK 98 (181)
T ss_dssp -------------------------SSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHT------TCEEE-EES
T ss_pred -------------------------cccceeeeeeccccccccceeecccccccccccccccccc------chhhh-cCC
Confidence 01234577888764 579999999999877777665442 34443 456
Q ss_pred cCcc
Q 022050 199 GVEA 202 (303)
Q Consensus 199 Gi~~ 202 (303)
.+..
T Consensus 99 Pl~~ 102 (181)
T d1zh8a1 99 PIST 102 (181)
T ss_dssp SSSS
T ss_pred CCcC
Confidence 5554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.51 E-value=6.3e-05 Score=62.49 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~ 120 (303)
...++++|+|.|.+|..+|..+..- | .+|..|++.....+. ...
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~~---------------------------~~~--- 85 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSPARA---------------------------AQL--- 85 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCHHHH---------------------------HHH---
T ss_pred ccceeeeeccccchhHHHHHHhhhc-c-----ceEEeecCCCChhHH---------------------------hhc---
Confidence 3458999999999999999988765 6 789999987642210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchh-HHHHH-HHHHHHhhccCCCCEEEEeec
Q 022050 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~-~~~vl-~~l~~~l~~~~~~~iivs~~n 198 (303)
.++. .++++.++.||+|++++|-.. ++.++ ++....+++ ++++|.+..
T Consensus 86 --------------------------~~~~-~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~---~a~lIN~sR 135 (184)
T d1ygya1 86 --------------------------GIEL-LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAAR 135 (184)
T ss_dssp --------------------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------Ccee-ccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCC---CceEEEecc
Confidence 1222 467888999999999999752 44343 233344666 789998888
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|=..+
T Consensus 136 G~iVd 140 (184)
T d1ygya1 136 GGLVD 140 (184)
T ss_dssp TTSBC
T ss_pred hhhhh
Confidence 75554
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.00011 Score=59.93 Aligned_cols=74 Identities=16% Similarity=0.081 Sum_probs=51.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHhCCCCc
Q 022050 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (303)
Q Consensus 147 ~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l~~~~~ 226 (303)
.+.++.++++..+.+|+||-.+.+....+.++....+ +..+|.-|.|+..+. .+.+.+.-. .
T Consensus 58 ~~~~~~~~~~~~~~~DViIDFs~p~~~~~~~~~a~~~------~~~~ViGTTG~~~~~---------~~~i~~~a~-~-- 119 (162)
T d1diha1 58 GVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQH------GKGMVIGTTGFDEAG---------KQAIRDAAA-D-- 119 (162)
T ss_dssp SCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHHHT------TCEEEECCCCCCHHH---------HHHHHHHTT-T--
T ss_pred CceeeccHHHHhcccceEEEeccHHHHHHHHHHHHhc------cceeEEecCCCcHHH---------HHHHHHHcC-C--
Confidence 4567788888888999999999998887777654432 567888888987642 133444332 1
Q ss_pred cEEEEeCCCcHHH
Q 022050 227 NILYLGGPNIASE 239 (303)
Q Consensus 227 ~~~v~~GP~~a~e 239 (303)
.-++..||++.-
T Consensus 120 -ipi~~apN~SlG 131 (162)
T d1diha1 120 -IAIVFAANFSMT 131 (162)
T ss_dssp -SCEEECSCCCHH
T ss_pred -CCEEEEccccHH
Confidence 235788999753
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.45 E-value=0.00022 Score=60.51 Aligned_cols=88 Identities=15% Similarity=0.061 Sum_probs=54.8
Q ss_pred CCCCceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 40 EGDPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
..+.-||+|||+|.||.. +...+... . +.+|+ ++|+++++.+...++ . ..+.
T Consensus 30 ~~~~iriaiIG~G~~~~~~~~~~~~~~-~----~~~ivav~d~~~~~a~~~~~~-----~---------------~i~~- 83 (221)
T d1h6da1 30 EDRRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIVAAE-----Y---------------GVDP- 83 (221)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHHHHH-----T---------------TCCG-
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHhC-C----CceEEEEecCCHHHHHHHHHh-----h---------------cccc-
Confidence 334569999999999974 55555443 2 15655 889998776542110 0 0110
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
..+...+|.++.+. +.|+|++++|+....++..+..
T Consensus 84 ----------------------------~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~al 121 (221)
T d1h6da1 84 ----------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAF 121 (221)
T ss_dssp ----------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred ----------------------------ccccccCchhhhcccccceeeeeccchhhhhhHHHHhh
Confidence 12344466666654 5899999999998766665544
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.44 E-value=0.00026 Score=58.24 Aligned_cols=94 Identities=28% Similarity=0.402 Sum_probs=71.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch-hhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.++|+|||.|+=|.+=|.-|-.+ | .+|++--|.... .++. +
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDS-G-----~~V~VGLr~gs~s~~~A--------------------------~------ 57 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVAKA--------------------------E------ 57 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHHHH--------------------------H------
T ss_pred CCEEEEEeeCcHhHHHHhhhhhc-C-----CCEEEEcCCCCccHHHH--------------------------h------
Confidence 37899999999999999999999 9 899887776532 1110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHH-HHHHHhhccCCCCEEEEeeccC
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~-~l~~~l~~~~~~~iivs~~nGi 200 (303)
.+ .+++ -+.+||++.+|+|++.+|...-.++++ +|.+++++ ++.+ .+.-|+
T Consensus 58 -----------~~------------Gf~v-~~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~---g~~L-~FaHGf 109 (182)
T d1np3a2 58 -----------AH------------GLKV-ADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GATL-AFAHGF 109 (182)
T ss_dssp -----------HT------------TCEE-ECHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCEE-EESCCH
T ss_pred -----------hh------------cccc-ccHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCC---CcEE-EEeccc
Confidence 01 2333 457889999999999999999999995 79999998 6554 466666
Q ss_pred cc
Q 022050 201 EA 202 (303)
Q Consensus 201 ~~ 202 (303)
..
T Consensus 110 nI 111 (182)
T d1np3a2 110 SI 111 (182)
T ss_dssp HH
T ss_pred eE
Confidence 54
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=8e-05 Score=61.88 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++||+|+|| |.+|+.++..|.++ | ++|+++.|+++++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~-g-----~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRLP 41 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEEcChhhcc
Confidence 3689999996 99999999999999 8 99999999987654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.23 E-value=0.00019 Score=58.57 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=34.8
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.|+|+|.++.+++..|.+. + .+|+++.|+.++++.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~-~-----~~i~I~nR~~~~a~~ 56 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE 56 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHccc-C-----ceeeeccchHHHHHH
Confidence 447999999999999999999876 6 789999999887654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.001 Score=53.05 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.4
Q ss_pred HhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccC
Q 022050 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (303)
Q Consensus 157 a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi 200 (303)
...++|++|+|+|...-.++.+++... .. +.+||++.+-+
T Consensus 62 ~~~~~DivF~a~~~~~s~~~~~~~~~~-g~---~~~VID~Ss~f 101 (146)
T d1t4ba1 62 ALKALDIIVTCQGGDYTNEIYPKLRES-GW---QGYWIDAASSL 101 (146)
T ss_dssp HHHTCSEEEECSCHHHHHHHHHHHHHT-TC---CCEEEECSSTT
T ss_pred hhhcCcEEEEecCchHHHHhhHHHHhc-CC---CeecccCCccc
Confidence 468999999999999888787776542 21 35788877544
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=97.13 E-value=0.00057 Score=52.51 Aligned_cols=56 Identities=27% Similarity=0.387 Sum_probs=42.8
Q ss_pred ccCCchhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
||--+++ +.+++....+ ..+||+|||+|.+|.-+|..|++. | .+|+++.+.+.-+.
T Consensus 12 ~~lrtl~----Da~~l~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~-g-----~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 12 HTLRTLE----DARRIQAGLR-PQSRLLIVGGGVIGLELAATARTA-G-----VHVSLVETQPRLMS 67 (121)
T ss_dssp EECCSHH----HHHHHHHHCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred EEeCCHH----HHHHHHHhhh-cCCeEEEECcchhHHHHHHHhhcc-c-----ceEEEEeecccccc
Confidence 4544544 4444444444 348999999999999999999998 8 89999999886554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=97.10 E-value=0.00038 Score=59.59 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=41.5
Q ss_pred hhhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|+=|++.+.....+. .++||+|||+|.-|.+.|..|+++ | ++|+++++++
T Consensus 13 ~~~~~~~~~~~~~~~~-~pkkV~IIGaG~aGLsaA~~L~~~-G-----~~V~vlE~~~ 63 (370)
T d2iida1 13 YEEFLEIARNGLKATS-NPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 63 (370)
T ss_dssp HHHHHHHHHHCSCCCS-SCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred HHHHHHHHhcCCCCCC-CCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 5555666665555555 558999999999999999999999 9 9999999865
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.04 E-value=0.0017 Score=51.77 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
+..+++|++|+|+|.....++.+++... .. +++||++++-+-
T Consensus 60 ~~~~~~DvvF~alp~~~s~~~~~~l~~~-g~---~~~VIDlSsdfR 101 (147)
T d1mb4a1 60 ESLKQLDAVITCQGGSYTEKVYPALRQA-GW---KGYWIDAASTLR 101 (147)
T ss_dssp HHHTTCSEEEECSCHHHHHHHHHHHHHT-TC---CSEEEESSSTTT
T ss_pred hhhccccEEEEecCchHHHHHhHHHHHc-CC---ceEEEeCCcccc
Confidence 3468999999999999888888776543 11 357888876543
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00094 Score=54.02 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=34.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-++|.|+|+|..+.+++..|++. | .+|+++.|+.++.++
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~-g-----~~i~I~nRt~~ka~~ 56 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE 56 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHhccc-c-----eEEEeccchHHHHHH
Confidence 48999999999999999999998 8 689999999887654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.01 E-value=0.0015 Score=51.48 Aligned_cols=97 Identities=13% Similarity=0.052 Sum_probs=68.3
Q ss_pred HHHHHhccCCCCCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHH
Q 022050 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (303)
Q Consensus 31 ~~~~~~~~~~~~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~ 106 (303)
++|+++.. +++|+|||+ |.+|..++..|.+. | ++|+.+.+..+.+.
T Consensus 11 ~i~~~L~~----~ksIAVVGaS~~~~~~g~~v~~~L~~~-g-----~~v~pVnP~~~~i~-------------------- 60 (139)
T d2d59a1 11 DIREILTR----YKKIALVGASPKPERDANIVMKYLLEH-G-----YDVYPVNPKYEEVL-------------------- 60 (139)
T ss_dssp HHHHHHHH----CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET--------------------
T ss_pred HHHHHHhc----CCeEEEEeecCCCCCchHHHHHHHHHC-C-----CEEEEECCcccccC--------------------
Confidence 45555432 468999997 57999999999998 8 88887776543221
Q ss_pred hhhhcccchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhc
Q 022050 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (303)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~ 186 (303)
...+..++.+.-...|++++++|+....++++++...
T Consensus 61 ----------------------------------------G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~--- 97 (139)
T d2d59a1 61 ----------------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK--- 97 (139)
T ss_dssp ----------------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH---
T ss_pred ----------------------------------------CCcccccccccCccceEEEEEeCHHHHHHHHHHHHHh---
Confidence 2223345555445689999999999999999997753
Q ss_pred cCCCCEEEEeeccCccc
Q 022050 187 RITVPVIISLAKGVEAE 203 (303)
Q Consensus 187 ~~~~~iivs~~nGi~~~ 203 (303)
+.-.+.++.|...+
T Consensus 98 ---g~k~v~~~~G~~~e 111 (139)
T d2d59a1 98 ---GAKVVWFQYNTYNR 111 (139)
T ss_dssp ---TCSEEEECTTCCCH
T ss_pred ---CCCEEEEeccccCH
Confidence 33456777776543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.98 E-value=0.00041 Score=57.77 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+||+|||+|..|.+.|..|+++ | ++|++++|+.
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~-G-----~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 37899999999999999999999 9 8999999864
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.96 E-value=0.0012 Score=51.39 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=63.5
Q ss_pred CCceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhh
Q 022050 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (303)
Q Consensus 42 ~~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~ 117 (303)
.+++|+|||+ |.+|..+...|.+. | ..+|+.+.+..+.+.
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~-~----~g~v~pVnP~~~~i~------------------------------- 50 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEY-K----KGKVYPVNIKEEEVQ------------------------------- 50 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTC-C----SSEEEEECSSCSEET-------------------------------
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHc-C----CCcEEEeccCccccC-------------------------------
Confidence 3579999998 88999988888654 3 157877776654221
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEee
Q 022050 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (303)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~ 197 (303)
..++..++.+.-...|++++++|+..+.++++++... . -..++.++
T Consensus 51 -----------------------------G~~~y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~-g----~~~~vi~s 96 (129)
T d2csua1 51 -----------------------------GVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIIT 96 (129)
T ss_dssp -----------------------------TEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECC
T ss_pred -----------------------------CeEeecchhhcCCCCceEEEecChHHhHHHHHHHHHc-C----CCEEEEec
Confidence 1223334444445689999999999999999987753 2 23466788
Q ss_pred ccCcc
Q 022050 198 KGVEA 202 (303)
Q Consensus 198 nGi~~ 202 (303)
.|+..
T Consensus 97 ~Gf~e 101 (129)
T d2csua1 97 AGFGE 101 (129)
T ss_dssp CSSTT
T ss_pred ccccc
Confidence 88865
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00088 Score=48.80 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
-+||+|+|+|..|.+.|..|++. | .+|++||.++.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~-g-----~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLAR-G-----VTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEeeCCcC
Confidence 37899999999999999999998 8 89999998664
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.94 E-value=0.0015 Score=52.95 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=41.7
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+.-+|.+.|.....=.. ++++|+|.|-+|..+|..+..- | ..|.+++++|-
T Consensus 8 ~S~~~~~~r~t~~~l~G-k~v~V~GyG~iG~g~A~~~rg~-G-----~~V~v~e~dp~ 58 (163)
T d1li4a1 8 ESLIDGIKRATDVMIAG-KVAVVAGYGDVGKGCAQALRGF-G-----ARVIITEIDPI 58 (163)
T ss_dssp HHHHHHHHHHHCCCCTT-CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred hhHHHHHHHHhCceecC-CEEEEeccccccHHHHHHHHhC-C-----CeeEeeecccc
Confidence 44567777776654433 8899999999999999999887 8 89999999984
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.88 E-value=0.00095 Score=54.46 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=34.6
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++.|+.|||+|..|..=+.....- | .+|+++|.+++++++
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~l-G-----A~V~~~D~~~~~l~~ 70 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY 70 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhC-C-----CEEEEEeCcHHHHHH
Confidence 34578999999999999976666665 8 899999999887654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.84 E-value=0.0028 Score=48.32 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=62.8
Q ss_pred CceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+++|+|||+ |.+|..+...|.+. | ++|+.+.++.+.+.
T Consensus 1 ~KsIAVvGaS~~~~k~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~-------------------------------- 42 (116)
T d1y81a1 1 FRKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDEIE-------------------------------- 42 (116)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEET--------------------------------
T ss_pred CcEEEEEcccCCCCCcHHHHHHHHHHC-C-----CEEEEEcccccccc--------------------------------
Confidence 478999995 78999999999998 8 78777765543221
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
++++..++.+.-+..|++++++|+....+++++.... +.-.+.++.
T Consensus 43 ----------------------------G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~------g~k~v~~~~ 88 (116)
T d1y81a1 43 ----------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEA------GFKKLWFQP 88 (116)
T ss_dssp ----------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHT------TCCEEEECT
T ss_pred ----------------------------CccccccchhccccceEEEEEeCHHHHHHHHHHHHhc------CCceEEecc
Confidence 2333344555445679999999999999999987642 233455677
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|...+
T Consensus 89 g~~~~ 93 (116)
T d1y81a1 89 GAESE 93 (116)
T ss_dssp TSCCH
T ss_pred chhhH
Confidence 75543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.82 E-value=0.0016 Score=58.95 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~ 119 (303)
.....+++|||+|..+..-+..+..-.+ -.+|.+|+|++++.++...+ +. ...+
T Consensus 125 ~~da~~l~iiG~G~QA~~~~~a~~~v~~----i~~V~v~~r~~~~~~~~~~~-----l~--------------~~~g--- 178 (340)
T d1x7da_ 125 RPNARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKLIAN-----LK--------------EYSG--- 178 (340)
T ss_dssp CTTCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHHHHH-----HT--------------TCTT---
T ss_pred ccCCceEEEEcccHHHHHHHHHHhhhcc----eeeeEEEecChHHHHHHHHh-----hh--------------hccC---
Confidence 3456899999999999988887766423 15899999998876542110 00 0001
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEE
Q 022050 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (303)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iiv 194 (303)
..+..+.++++++++||+|+.++.+.....+++ ..++++ ++.|.
T Consensus 179 --------------------------~~v~~~~s~~eav~~ADIi~t~Tas~s~~Pv~~--~~~l~p---G~hI~ 222 (340)
T d1x7da_ 179 --------------------------LTIRRASSVAEAVKGVDIITTVTADKAYATIIT--PDMLEP---GMHLN 222 (340)
T ss_dssp --------------------------CEEEECSSHHHHHTTCSEEEECCCCSSEEEEEC--GGGCCT---TCEEE
T ss_pred --------------------------CCceecCCHHHHHhcCCceeeccccCCCCcccc--hhhcCC---CCEEe
Confidence 136678899999999999999886542222222 245666 66554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.82 E-value=0.0015 Score=52.69 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=34.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+||.|+|+|..|.+++..|.+. |. .+|++++|+.++.+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~-g~----~~I~I~nR~~~ka~~ 56 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQY 56 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CC----CEEEEecccHHHHHH
Confidence 47899999999999999999998 82 479999999876653
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=96.78 E-value=0.0017 Score=50.40 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=40.9
Q ss_pred hhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++..++..... ..+||+|||+|.+|.-+|..|++. | .+|+++.+.+.-+.+
T Consensus 22 ~~d~~~l~~~~~-~~k~v~VIGgG~iG~E~A~~l~~~-g-----~~Vtvie~~~~~l~~ 73 (133)
T d1q1ra2 22 LEDAECIRRQLI-ADNRLVVIGGGYIGLEVAATAIKA-N-----MHVTLLDTAARVLER 73 (133)
T ss_dssp HHHHHHHHHTCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSTTTT
T ss_pred HHHHHHHHHhhc-cCCEEEEECCchHHHHHHHHHHhh-C-----cceeeeeeccccccc
Confidence 344445555544 348999999999999999999998 8 899999998765543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.76 E-value=0.0016 Score=51.49 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=59.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
+|||+|+|| |..|.-+.+.|.++ .+ +..++..+..+...-+ ......
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~-~h--P~~~l~~~~s~~~~Gk--------------------------~i~~~~--- 49 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDER-DF--PLHRLHLLASAESAGQ--------------------------RMGFAE--- 49 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT-TC--CCSCEEEEECTTTTTC--------------------------EEEETT---
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc-CC--CceEEEEEeecccCCc--------------------------ceeecc---
Confidence 599999999 99999999999875 31 1146666654432111 111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
..+.......+...++|++|+|.|.....+...++. .. +..||++.+-+-
T Consensus 50 ------------------------~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~~~~---~~---g~~VID~Ss~fR 99 (144)
T d2hjsa1 50 ------------------------SSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAERAR---AA---GCSVIDLSGALE 99 (144)
T ss_dssp ------------------------EEEECEEGGGCCGGGCSEEEECSCHHHHHHHHHHHH---HT---TCEEEETTCTTT
T ss_pred ------------------------ccchhccchhhhhccceEEEecCCcchhhhhccccc---cC---CceEEeechhhc
Confidence 011111111233578999999999988777776654 33 678888776554
Q ss_pred c
Q 022050 202 A 202 (303)
Q Consensus 202 ~ 202 (303)
.
T Consensus 100 ~ 100 (144)
T d2hjsa1 100 P 100 (144)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.73 E-value=0.0017 Score=57.97 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=34.8
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..+..+++|||+|..+..-+..++.-.. -.+|.+|+|++++.++
T Consensus 122 ~~~~~~l~iiGaG~QA~~~~~al~~~~~----i~~i~v~~r~~e~~~~ 165 (320)
T d1omoa_ 122 RKNSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (320)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred cCCccEEEEecCcccHHHHHHHHHHHhh----hhhcccccCCHHHHHH
Confidence 3456899999999999999998876512 1589999999887654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.0011 Score=54.23 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..++|.|+|+|.+|.+++..|++. |. ..+++++|+++++++
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~-g~----~~i~i~nR~~~~~~~ 57 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDEFFDK 57 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEECSSTTHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHhhc-CC----ceEeeeccchHHHHH
Confidence 347999999999999999999998 72 589999999987765
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.66 E-value=0.002 Score=49.29 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
..+||+|||+|.+|.-+|..|++. | .+|+++.+.+.-+.
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~-g-----~~Vtlie~~~~~l~ 67 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKA-G-----KKVTVIDILDRPLG 67 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred CCCEEEEECChHHHHHHHHHhhcc-c-----eEEEEEEecCcccc
Confidence 357999999999999999999998 8 89999999875443
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.61 E-value=0.0047 Score=49.47 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=24.0
Q ss_pred CceEEEECCChHHHH-HHHHHHHhcCCCCCCeeEEE-EecCCc
Q 022050 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRI-WRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~a-iA~~La~~~G~~~~~~~V~l-~~r~~~ 83 (303)
++||+|||+|.+|.. +...+... . ..++.. .+|+++
T Consensus 4 kirvaIIGaG~ig~~~~~~~l~~~-~----~~el~avas~~~~ 41 (157)
T d1nvmb1 4 KLKVAIIGSGNIGTDLMIKVLRNA-K----YLEMGAMVGIDAA 41 (157)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHC-S----SEEEEEEECSCTT
T ss_pred CcEEEEEcCcHHHHHHHHHHHhhC-C----cceEEEEEecchh
Confidence 489999999999986 45555333 2 145554 467664
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.61 E-value=0.0077 Score=48.83 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=31.8
Q ss_pred EEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCc
Q 022050 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (303)
Q Consensus 149 ~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~ 201 (303)
....+......++|++|+|.|.....+...++.. . +..++.+..-+-
T Consensus 61 ~~~~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~---~---~~~vIDlSadfR 107 (179)
T d2g17a1 61 QPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQ---A---GCVVFDLSGAFR 107 (179)
T ss_dssp EEESCGGGTCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTTS
T ss_pred ccchhhhhhhcccceeeccccchhHHHHhhhhhh---c---Cceeeccccccc
Confidence 3344544445689999999999877777666543 3 677887765443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.59 E-value=0.00069 Score=56.58 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+|||+|.-|.+.|..|+++ | ++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~-G-----~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 7999999999999999999999 9 8999999864
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.58 E-value=0.0017 Score=50.16 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=52.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
.-||+|+|||.+|.+++..+..+.| +++. ++|-++++.. ....++
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~-----~~iv~fiDdd~~k~G-------------------------~~I~Gi---- 48 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVG-------------------------RPVRGG---- 48 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTT-------------------------CEETTE----
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCC-----cEEEEEEeCchHhcC-------------------------CEECCE----
Confidence 3589999999999999887644313 5544 5677765321 112221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCchhHHHHHHHHHHH
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRY 183 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~-~~aDlVIiaVp~~~~~~vl~~l~~~ 183 (303)
++...+++++.. +..++.++++|+...+++++++..+
T Consensus 49 -------------------------~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~l~~~ 86 (126)
T d2dt5a2 49 -------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAA 86 (126)
T ss_dssp -------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -------------------------EEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHHHHHc
Confidence 122223444432 3578999999999988888887653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.57 E-value=0.0018 Score=48.90 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred HHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 34 RLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 34 ~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..+...+ .+++|+|||+|.+|.-+|..|++. | .+|+++.|.+.-+
T Consensus 14 ~~l~~~~-~p~~v~IiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~il 58 (117)
T d1ebda2 14 GALNLGE-VPKSLVVIGGGYIGIELGTAYANF-G-----TKVTILEGAGEIL 58 (117)
T ss_dssp HHHTCSS-CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred HhhChhh-cCCeEEEECCCccceeeeeeeccc-c-----cEEEEEEecceec
Confidence 3344433 458999999999999999999998 9 8999999988644
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.0019 Score=49.40 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=37.1
Q ss_pred HhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 35 ~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+.+.. -++|++|||+|.+|.=+|..|+.. | .+|+++.+.+.-+.
T Consensus 16 ~~~l~~-~p~~~vIiG~G~ig~E~A~~l~~l-G-----~~Vtii~~~~~~l~ 60 (122)
T d1v59a2 16 ALSLKE-IPKRLTIIGGGIIGLEMGSVYSRL-G-----SKVTVVEFQPQIGA 60 (122)
T ss_dssp HTTCSS-CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSSS
T ss_pred hhCccc-CCCeEEEECCCchHHHHHHHHHhh-C-----cceeEEEeccccch
Confidence 344444 458999999999999999999998 9 99999999875443
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.51 E-value=0.015 Score=45.40 Aligned_cols=64 Identities=19% Similarity=0.045 Sum_probs=43.3
Q ss_pred cCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCccccccccccCCHHHHHHhHh-CCCCccEEEEeCCCcH
Q 022050 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT-GVPIENILYLGGPNIA 237 (303)
Q Consensus 159 ~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~~~~~~~~~~~~~~~i~~~l-~~~~~~~~v~~GP~~a 237 (303)
.++|+||-.+.|..+.+.++....+ +..+|+-|.|++.+.. +.+.+.. -. ..+-++..|||.
T Consensus 43 ~~~DvvIDFS~p~~~~~~~~~~~~~------~~~~ViGTTG~~~~~~---------~~l~~~~~~~--~~ipil~apNfS 105 (135)
T d1yl7a1 43 GNTEVVIDFTHPDVVMGNLEFLIDN------GIHAVVGTTGFTAERF---------QQVESWLVAK--PNTSVLIAPNFT 105 (135)
T ss_dssp TTCSEEEECCCTTTHHHHHHHHHHT------TCEEEECCCCCCHHHH---------HHHHHHHHSC--TTCEEEECSCCG
T ss_pred ccCCEEEEcccHHHHHHHHHHHHhc------CCCEEEeccccchhHH---------HHHHHHHHhc--CCCCEEEcCCcc
Confidence 4689999999999888888765542 5678888889886521 3354432 11 124578899997
Q ss_pred HH
Q 022050 238 SE 239 (303)
Q Consensus 238 ~e 239 (303)
.-
T Consensus 106 lG 107 (135)
T d1yl7a1 106 SF 107 (135)
T ss_dssp GG
T ss_pred HH
Confidence 53
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0018 Score=53.24 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 40 ~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
...++||+|||+|.-|..-|..|+++ | |+|++++++++-
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~-G-----~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAAR-G-----HQVTLFDAHSEI 78 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSSS
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhh-c-----cceEEEeccCcc
Confidence 34568999999999999999999999 9 999999998753
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.38 E-value=0.0017 Score=54.48 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=33.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||+|||+|.-|.+.|..|+++ | ++|++++++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 358999999999999999999999 9 99999998765
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.35 E-value=0.0059 Score=48.92 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.2
Q ss_pred CCCceEEEECCChHHHHHHHHHHHh
Q 022050 41 GDPLRIVGVGAGAWGSVFTAMLQDS 65 (303)
Q Consensus 41 ~~~~kI~VIGaG~mG~aiA~~La~~ 65 (303)
...+||+|||+|.||...+..+...
T Consensus 5 ~~k~kv~iIG~G~~g~~h~~~l~~~ 29 (172)
T d1lc0a1 5 SGKFGVVVVGVGRAGSVRLRDLKDP 29 (172)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHTSH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhC
Confidence 4568999999999999988887654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.35 E-value=0.0013 Score=52.92 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=32.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCch
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~ 84 (303)
..+||+|||+|..|...|..|++. | + +|+++++.+.-
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~-G-----~~~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARL-G-----YSDITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSSSC
T ss_pred CCCEEEEECChHHHHHHHHHHHHC-C-----CCeEEEEEecCcc
Confidence 358999999999999999999999 9 6 69999998753
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.32 E-value=0.001 Score=50.81 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=32.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
++|+|||+|.+|.-+|..|++. | .+|+++.+.+.-
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~l 67 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA-G-----YHVKLIHRGAMF 67 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT-T-----CEEEEECSSSCC
T ss_pred CcEEEECCcHHHHHHHHHhhcc-c-----ceEEEEeccccc
Confidence 7899999999999999999998 8 899999998753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.29 E-value=0.017 Score=43.02 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=32.3
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.-+||.|||+|.+|..-|..|.+. | .+|+++++...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~-g-----a~v~v~~~~~~ 46 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA-G-----ARLTVNALTFI 46 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-T-----BEEEEEESSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 347999999999999999999999 8 89999998764
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0024 Score=48.22 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=34.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
-++||+|||+|..|.-+|..|++. | .+|+++.|.+.-+.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~~l~ 58 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGL-G-----AKTHLFEMFDAPLP 58 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSST
T ss_pred CCCEEEEECCChhhHHHHHHhhcc-c-----cEEEEEeecchhhh
Confidence 358999999999999999999998 8 89999999875543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.24 E-value=0.0024 Score=48.54 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
++||+|||+|.+|.-+|..|+.. | .+|+++.|.+.-+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~il 58 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRL-G-----IDSYIFARGNRIL 58 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEECCchHHHHHHHHHHhc-c-----ccceeeehhcccc
Confidence 68999999999999999999988 8 8999999977544
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.18 E-value=0.00044 Score=57.37 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=22.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYG 67 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G 67 (303)
|||+|||||.+|.+.|..|+++ |
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~-G 23 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER-Y 23 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-H
T ss_pred CEEEEECchHHHHHHHHHHHHC-C
Confidence 8999999999999999999999 8
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0069 Score=49.47 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=26.3
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
|+||+|+|| |..|.-+.+.|+.+ - ..++..+..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeec
Confidence 689999999 99999999999876 3 256665543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.01 Score=46.48 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=32.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
-.|.|+|.|.+|..++..|.+. | ++|++++.+++..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~-~-----~~v~vId~d~~~~ 39 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDD 39 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeccchhH
Confidence 4699999999999999999998 8 8999999998653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.10 E-value=0.0033 Score=48.03 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+.|++|||+|.+|.=+|..|++. | .+|+++.+++
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~l-G-----~~Vtii~~~~ 53 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGI-G-----LDVTVMVRSI 53 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CCCeEEEECCCccHHHHHHHHhhc-C-----CeEEEEEech
Confidence 447899999999999999999998 9 8999998864
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.09 E-value=0.0022 Score=54.38 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=29.5
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|||+|.+|++.|..|++. | .+|+++++++
T Consensus 7 vvIIGaGi~Gls~A~~La~~-G-----~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 99999999999999999999 9 8999999875
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0062 Score=47.51 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=65.2
Q ss_pred CceEEEECC----ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhh
Q 022050 43 PLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (303)
Q Consensus 43 ~~kI~VIGa----G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~ 118 (303)
+++|+|||| +.+|..+...|.+. | +++..+..++..- ...
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~-g-----~~~~~v~~~~~~~---------------------------~i~--- 56 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YRVLPVNPRFQGE---------------------------ELF--- 56 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CEEEEECGGGTTS---------------------------EET---
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcC-C-----CCceEEEeccccc---------------------------eee---
Confidence 467999998 78999999999988 8 8999888765310 010
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeec
Q 022050 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (303)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~n 198 (303)
...+..++.+.-...|++++++|+....+++++.... .. + .+.++.
T Consensus 57 ----------------------------g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~-g~---k--~i~~q~ 102 (136)
T d1iuka_ 57 ----------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL-RP---G--LVWLQS 102 (136)
T ss_dssp ----------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-CC---S--CEEECT
T ss_pred ----------------------------ceecccchhhccCCCceEEEeccHHHHHHHHHHHHhh-CC---C--eEEEec
Confidence 2334455555445679999999999999999987653 22 2 345788
Q ss_pred cCccc
Q 022050 199 GVEAE 203 (303)
Q Consensus 199 Gi~~~ 203 (303)
|...+
T Consensus 103 G~~~~ 107 (136)
T d1iuka_ 103 GIRHP 107 (136)
T ss_dssp TCCCH
T ss_pred CccCH
Confidence 87654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.09 E-value=0.0025 Score=52.83 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||+|||+|.-|.+-|..|++. | ++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~-G-----~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH-G-----LNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-S-----CEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 7899999999999999999999 9 8999999865
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0034 Score=47.98 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
++|++|||+|.+|.-+|..|+.. | .+|+++.|.+.-+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~-G-----~~Vtlv~~~~~~l 58 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSAL-G-----SKTSLMIRHDKVL 58 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEEcCCccHHHHHHHHhcC-C-----cEEEEEeeccccc
Confidence 48999999999999999999998 8 8999999987544
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.07 E-value=0.0049 Score=46.68 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
-++||+|||+|.+|.=+|..|++. | .+|+++.+.+.-+
T Consensus 21 ~p~~i~IiG~G~ig~E~A~~l~~~-G-----~~Vtiv~~~~~ll 58 (119)
T d3lada2 21 VPGKLGVIGAGVIGLELGSVWARL-G-----AEVTVLEAMDKFL 58 (119)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHHc-C-----CceEEEEeecccC
Confidence 458999999999999999999998 9 8999999887544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.019 Score=45.66 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=32.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... |. .+|+++++++++++.
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~-G~----~~Vi~~d~~~~rl~~ 66 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAM-GA----AQVVVTDLSATRLSK 66 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESCHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHc-CC----ceEEeccCCHHHHHH
Confidence 5899999999999988877776 71 379999999887653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.06 E-value=0.0029 Score=55.95 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+||+|||||--|.+.|..|+++ | ++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~-G-----~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhC-C-----CCEEEEECCCC
Confidence 58999999999999999999998 8 99999998874
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.0075 Score=49.28 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=26.9
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~ 82 (303)
|-||+|.|.|.||..+++.+.++ + +.+|+.+ ++.+
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-~----dievVaInd~~~ 36 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-P----DMKLVGVAKTSP 36 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEECSSC
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-C----CCEEEEEECCCC
Confidence 56999999999999999999876 4 2565544 4444
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.06 E-value=0.016 Score=48.87 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=24.2
Q ss_pred eEEecCHHHHhc--CCCEEEEecCchhHHHHHHHHH
Q 022050 148 LKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (303)
Q Consensus 148 i~~t~d~~~a~~--~aDlVIiaVp~~~~~~vl~~l~ 181 (303)
....+|.++.+. +-|+|++++|+....+......
T Consensus 71 ~~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~al 106 (237)
T d2nvwa1 71 ATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNIL 106 (237)
T ss_dssp CEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHH
T ss_pred ceeecchhhcccccccceeeccCCCcchhhHHHHHH
Confidence 344567777654 5789999999987766655543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.05 E-value=0.014 Score=47.07 Aligned_cols=51 Identities=18% Similarity=0.061 Sum_probs=40.1
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+.-+|-++|-....-.. ++++|+|.|-.|..+|..+..- | ..|+++.++|-
T Consensus 7 ~S~~d~i~r~t~~~laG-k~vvV~GYG~vGrG~A~~~rg~-G-----a~V~V~E~DPi 57 (163)
T d1v8ba1 7 HSLPDGLMRATDFLISG-KIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDPI 57 (163)
T ss_dssp HHHHHHHHHHHCCCCTT-SEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHH
T ss_pred hhHHHHHHHHhCceecC-CEEEEecccccchhHHHHHHhC-C-----CEEEEEecCch
Confidence 33456666655443333 8999999999999999999988 8 89999999983
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.98 E-value=0.0055 Score=45.98 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=36.9
Q ss_pred hccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 36 ~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+...+ .++|++|||+|..|.-+|..|++. | .+|+++.+.+.-+..
T Consensus 15 l~~~~-~p~~vvIiGgG~~G~E~A~~l~~~-g-----~~Vtlve~~~~il~~ 59 (115)
T d1lvla2 15 LAPKA-LPQHLVVVGGGYIGLELGIAYRKL-G-----AQVSVVEARERILPT 59 (115)
T ss_dssp TCCSS-CCSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSSTT
T ss_pred hCccc-CCCeEEEECCCHHHHHHHHHHhhc-c-----cceEEEeeecccccc
Confidence 34333 458999999999999999999998 8 899999998765443
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.93 E-value=0.004 Score=52.07 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+++|+|||+|.-|.+.|..|++. |. ++|+++++.++.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~-Gi----~~V~V~Er~~~~ 37 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQA-GI----GKVTLLESSSEI 37 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CC----CeEEEEeCCCCC
Confidence 58999999999999999999998 82 389999997753
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.90 E-value=0.0064 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.118 Sum_probs=33.0
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
-++|.|+|+|..+.+++..|++. .+|+++.|+.++.+.+
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~-------~~i~I~nR~~~ka~~l 56 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKD-------NNIIIANRTVEKAEAL 56 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSS-------SEEEEECSSHHHHHHH
T ss_pred CCEEEEECCcHHHHHHHHHHccc-------cceeeehhhhhHHHHH
Confidence 47999999999999999888654 4799999998877653
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.80 E-value=0.011 Score=48.58 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=33.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
++-||.|||+|..|..=+.....- | .+|+++|.++++++++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~l-G-----A~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKEQVE 69 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHH
Confidence 357999999999999855555544 8 89999999998776543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.78 E-value=0.011 Score=46.73 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=32.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... | .+|+.+++++++++.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~-G-----a~vi~v~~~~~r~~~ 65 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAY-G-----AFVVCTARSPRRLEV 65 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhh-c-----ccccccchHHHHHHH
Confidence 6899999999999988777666 8 789999999887653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.66 E-value=0.0043 Score=52.99 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+|+|||+|.-|.++|..|++. | ++|.++++.++
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~-G-----~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 699999999999999999999 9 89999999874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.66 E-value=0.0076 Score=45.84 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=37.3
Q ss_pred HhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 35 ~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+...+ -+++++|||+|.+|.=+|..|+.. | .+|+++.|.+.-+.
T Consensus 18 ~l~l~~-~p~~~viiG~G~iglE~A~~~~~~-G-----~~Vtvi~~~~~~l~ 62 (123)
T d1dxla2 18 ALALSE-IPKKLVVIGAGYIGLEMGSVWGRI-G-----SEVTVVEFASEIVP 62 (123)
T ss_dssp HTTCSS-CCSEEEESCCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred hhCccc-cCCeEEEEccchHHHHHHHHHHhc-C-----CeEEEEEEccccCc
Confidence 343333 458999999999999999999998 9 89999999886543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.63 E-value=0.0045 Score=49.72 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||+|||+|.-|.+.|..|+++ |+ ++|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~-G~----~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA-GI----TDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT-TC----CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC-CC----CcEEEEECCC
Confidence 4799999999999999999999 82 3799999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0076 Score=42.71 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+++|+|+|+|..|..++..-..- | .+|.+++.+++.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L-G-----~~v~vldp~~~~ 36 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL-G-----IAVWPVGLDAEP 36 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG-T-----EEEEEECTTSCG
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc-C-----CEEEEEcCCCCC
Confidence 57999999999999999887776 8 899999998753
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.49 E-value=0.0086 Score=48.50 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||+|||+|..|..+|..|.+. + ++.+|++++|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~-~---~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL-H---PDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-C---TTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCCeEEEEeCCC
Confidence 8999999999999999999886 4 125899998865
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.47 E-value=0.0066 Score=53.35 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.++||+|||||.-|.+.|..|++. |. .++|+++.++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~-~~---~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAE-KA---FDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-TC---CSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHh-CC---CCCEEEEECCCC
Confidence 468999999999999999999876 51 158999999864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.45 E-value=0.011 Score=44.18 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=33.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..++|+|||+|.+|.=+|..|+.. | .+|+++.+.+.-+
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~-g-----~~vt~i~~~~~~l 58 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNAT-G-----RRTVMLVRTEPLK 58 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-c-----hhheEeeccchhh
Confidence 458999999999999999999998 8 8999999987543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=95.37 E-value=0.006 Score=52.44 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|.|||+|.+|.+.|..|++. |. ++|+++++++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~-G~----~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR-GW----NNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TC----CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CcEEEEeCCC
Confidence 3799999999999999999998 82 3799999875
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.36 E-value=0.015 Score=44.38 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=37.1
Q ss_pred HhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 35 LMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 35 ~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+...+ .+.+++|||+|.+|.=+|..|+.. | .+|+++.+.+.-+.
T Consensus 19 ~l~l~~-~p~~vvIiGgG~IG~E~A~~~~~~-G-----~~Vtive~~~~il~ 63 (125)
T d1ojta2 19 ALALKE-VPGKLLIIGGGIIGLEMGTVYSTL-G-----SRLDVVEMMDGLMQ 63 (125)
T ss_dssp HTTCCC-CCSEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred hhCccc-cCCeEEEECCCHHHHHHHHHhhcC-C-----CEEEEEEeeccccc
Confidence 444444 458999999999999999999998 9 89999999875543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.35 E-value=0.011 Score=50.11 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=33.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
.++||.|+|+ |.+|..++..|.++ | ++|++..|++...
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~ 40 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEVVS 40 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCCSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCCccc
Confidence 3589999997 99999999999999 9 9999999987543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.33 E-value=0.007 Score=49.81 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCC--CCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~--~~~~~~V~l~~r~~~ 83 (303)
++||+|||+|.-|.+-|..|++. |+ ...+++|++|++.+.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCCC
Confidence 57999999999999999999998 71 111247999999874
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.19 E-value=0.014 Score=43.84 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=31.6
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..||+|+|+|..|..+|....+- | ++|.++|++++.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~l-G-----~~v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRL-G-----VEVIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCCCCC
Confidence 47999999999999999987776 8 899999998753
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.14 E-value=0.012 Score=49.09 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...||+|||+|-=|.+-|..|+++ | ++|+++..+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~-G-----~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSF-G-----MDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 447899999999999999999999 9 8999998765
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.02 E-value=0.012 Score=45.67 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+||+|||+|..|..+|..|.+. + ++.+|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~-~---~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLA-D---PSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C---TTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHc-C---CCCcEEEEECCCc
Confidence 6999999999999999999987 6 1248999988774
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0087 Score=52.15 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=31.8
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|..|+|||||.-|++.|..|++. | ++|++++++..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~-g-----~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL-N-----KKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG-T-----CCEEEECSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC-C-----CcEEEEECCCC
Confidence 46899999999999999999998 8 89999998763
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.98 E-value=0.0096 Score=50.00 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=34.7
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.++||.|+|+ |.+|+.++..|.++ | ++|+.++|++....
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~-G-----~~V~~l~R~~~~~~ 41 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVRESTASS 41 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCCTTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEECCCcccc
Confidence 4689999998 99999999999999 9 99999999876543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.96 E-value=0.016 Score=43.97 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.|.|+|.|.+|..++..|. | ++|.+++.+++..+.
T Consensus 2 HivI~G~g~~g~~l~~~L~---~-----~~i~vi~~d~~~~~~ 36 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR---G-----SEVFVLAEDENVRKK 36 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC---G-----GGEEEEESCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHc---C-----CCCEEEEcchHHHHH
Confidence 5889999999999999883 3 568889999886653
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.89 E-value=0.038 Score=45.75 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=36.5
Q ss_pred hccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 36 ~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+...-.-++|+|-|.|++|..+|..|.+. | ..|+++|.+++.++
T Consensus 20 ~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-G-----akvvv~d~d~~~~~ 64 (201)
T d1c1da1 20 RGLGSLDGLTVLVQGLGAVGGSLASLAAEA-G-----AQLLVADTDTERVA 64 (201)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred hCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEecchHHHHH
Confidence 343333448999999999999999999999 9 89999998876543
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.012 Score=47.03 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=29.6
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|||+|.-|.+.|..|+++ | ++|.++++++
T Consensus 8 viViGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD-G-----KKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCC
Confidence 89999999999999999999 9 8999999976
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.75 E-value=0.025 Score=45.89 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.5
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~ 79 (303)
+++||+|+|| |..|.-+.+.|+.+ - ..++....
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~ 37 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMT 37 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhC-C----CceEEEEe
Confidence 4689999999 99999999999876 3 25666554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.70 E-value=0.019 Score=47.80 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..+||+|||+|.-|.+.|..|++. | ++|++++++.+-
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~-G-----~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMES-G-----YTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHHh-c-----cceeeEeecccc
Confidence 458999999999999999999999 9 899999987753
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.048 Score=45.13 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=32.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+||.|.|+ |.+|+.++..|.++ |.+ +.|++++|++...
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~-g~~---~~v~~~~R~~~~~ 53 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ-GLF---SKVTLIGRRKLTF 53 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH-TCC---SEEEEEESSCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCC---CEEEEEecChhhh
Confidence 68999998 99999999999998 732 4899999987543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.68 E-value=0.013 Score=49.68 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=29.4
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-|+|||+|..|.+.|..|+++ | .+|+++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~-G-----~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 389999999999999999999 9 8999999864
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.65 E-value=0.019 Score=47.32 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=30.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+||+|||+|.-|.+-|..|+++ + .+++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~-~---~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH-H---SRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C---SSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhc-C---CCCeEEEEeCCCC
Confidence 5999999999999999999876 4 1279999998864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.042 Score=50.63 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=33.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
+||.|||+|.+|+.++..|+.. |. .+++++|.+.=....++
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~-Gv----g~i~lvD~D~Ve~sNL~ 78 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDTIDVSNLN 78 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT-TC----CCEEEECCCBCCGGGGG
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCCcchhhhc
Confidence 6899999999999999999998 93 47999998764344433
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.54 E-value=0.012 Score=47.30 Aligned_cols=39 Identities=23% Similarity=0.040 Sum_probs=30.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+|+|+|.+|...++.+... |. ..|+..++++++++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~-Ga----~~Vi~~d~~~~r~~~ 67 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR-GA----GRIIGVGSRPICVEA 67 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TC----SCEEEECCCHHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcc-cc----cccccccchhhhHHH
Confidence 6899999999999877776665 71 369999999876653
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.53 E-value=0.058 Score=43.42 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=26.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEE-ecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~-~r~~ 82 (303)
|+||+|-|.|.+|..+.+.+..+ + +.+|+.+ ++++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-~----di~vvaInd~~~ 36 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-D----DMKVIGVSKTRP 36 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-S----SEEEEEEEESSC
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-C----CceEEEEecCCc
Confidence 67999999999999999988776 4 2555443 4443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=94.53 E-value=0.048 Score=39.63 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCceEEEECCChHH-HHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 42 ~~~kI~VIGaG~mG-~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..+||-+||.|-.| +++|..|.+. | ++|+.+|+...
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~-G-----~~VsGSD~~~~ 43 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNE-G-----YQISGSDIADG 43 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHH-T-----CEEEEEESCCS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence 45899999999999 8889999999 9 99999998753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.024 Score=43.63 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=36.9
Q ss_pred hhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHh---cCCCCCCeeEEEEecCCchhh
Q 022050 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS---YGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 29 ~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~---~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++++++....+ ..++|+|||+|..|.-+|..|++. .| .+|+++.+.+.-+.
T Consensus 24 ~~d~~~l~~~~~-~~k~i~IvGgG~~G~E~A~~l~~~~~~~g-----~~Vt~i~~~~~~l~ 78 (137)
T d1m6ia2 24 IGDFRSLEKISR-EVKSITIIGGGFLGSELACALGRKARALG-----TEVIQLFPEKGNMG 78 (137)
T ss_dssp HHHHHHHHHHHH-HCSEEEEECCSHHHHHHHHHHHHHHHHHT-----CEEEEECSSSSTTT
T ss_pred HHHHHHHHHHhh-cCCEEEEECCCHHHHHHHHHHHHHHHhcC-----CEEEEecccccCCc
Confidence 344444444433 347999999999999999988642 15 79999998776543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.50 E-value=0.012 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEE--EEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~--l~~r~~~~~ 85 (303)
+|++|.|.|+ |.+|..++..|.++ | ++|. ...|++++.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g-----~~v~v~~~~R~~~~~ 42 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG-S-----DKFVAKGLVRSAQGK 42 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT-T-----TTCEEEEEESCHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-C-----CcEEEEEEcCCHHHH
Confidence 5789999996 99999999999998 8 6544 456666543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.46 E-value=0.061 Score=42.27 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=29.1
Q ss_pred HHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 156 ~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
....+.|+++++.|+....+...+.. .. +..||++.+-+-.
T Consensus 59 ~~~~~~d~~f~~~~~~~s~~~~~~~~---~~---~~~VIDlSsdfR~ 99 (154)
T d2gz1a1 59 TAFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYFRQ 99 (154)
T ss_dssp TTTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTTTT
T ss_pred hhhhhhhhhhhccCccchhhHHhhhc---cc---cceehhcChhhhc
Confidence 34578999999999887666655443 33 6888887765543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=94.41 E-value=0.014 Score=48.99 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=31.1
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.|||.|.|+ |.+|+.++..|..+ | ++|+..+|++
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~-g-----~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGK-N-----VEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTS-S-----EEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEeechh
Confidence 389999998 99999999999988 8 9999998875
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.026 Score=47.57 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=34.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||+|+|+|.+|+.+|..|+.. |. ..++++|.+.=....++
T Consensus 30 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~Ve~sNL~ 71 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDTVSLSNLQ 71 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCBCCGGGGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCcccchhhhh
Confidence 36999999999999999999999 93 58999998764444444
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.00 E-value=0.028 Score=49.22 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=34.2
Q ss_pred CCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
..++|+|+|+ |.+|+.++..|.++ | ++|++..|++.+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~-G-----~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV-G-----HHVRAQVHSLKGL 40 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCSCSH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC-C-----CeEEEEECCcchh
Confidence 3589999997 99999999999999 8 8999999988654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.90 E-value=0.14 Score=40.49 Aligned_cols=39 Identities=21% Similarity=0.090 Sum_probs=30.7
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|.+.+..+... |. ..|.+.++++++++.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~-g~----~~v~~~~~~~~k~~~ 68 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVC-GA----SIIIAVDIVESRLEL 68 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-TC----SEEEEEESCHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhccccc-cc----ceeeeeccHHHHHHH
Confidence 6899999999999998887776 71 456777888876553
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.86 E-value=0.065 Score=43.29 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=34.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|.++|..|++. | .+|++.+|++++++.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~-G-----~~V~~~~r~~~~~~~ 62 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA 62 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhh-c-----cchhhcccchHHHHH
Confidence 88999995 99999999999999 9 899999999987764
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.82 E-value=0.03 Score=47.58 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=32.4
Q ss_pred ceEEEE-CC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VI-Ga-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+||++| |+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 1 KKValITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~ 41 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD-G-----FAVAIADYNDATAKAV 41 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 577555 76 56999999999999 9 8999999998877653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.72 E-value=0.054 Score=38.90 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=30.3
Q ss_pred ceEEEECCChHHH-HHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~-aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|||=+||-|-+|- ++|..|.+. | +.|+..|+.+.
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~-G-----~~VsGSD~~~~ 36 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN-G-----NDVYGSNIEET 36 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSSCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC-C-----CeEEEEeCCCC
Confidence 8999999998886 789999998 9 89999998863
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.14 Score=48.13 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=41.7
Q ss_pred hhhhhHHHHHhccCCCC---CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|+|-|.=.|+.|..... ..||+|+|+|.+|+-++..|+.. |. ..++++|.+.=
T Consensus 5 e~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~-GV----g~itivD~d~v 60 (529)
T d1yova1 5 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQV 60 (529)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTT-TC----SEEEEECCSBC
T ss_pred hhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHh-cC----CEEEEEcCCcC
Confidence 56677666677665533 36899999999999999999998 83 58999987653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.69 E-value=0.03 Score=48.86 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=30.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||.|+|+ |.+|+.++..|.++ | ++|++++|-.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~-g-----~~V~~~d~~~ 34 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVIILDNLC 34 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECCC
Confidence 89999999 99999999999999 8 8999998743
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.67 E-value=0.058 Score=40.13 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+++|+|||+|.+|.-+|..|..- | ..+.+|+++.+.+.-+.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l-~--~~~~~Vtli~~~~~iL~ 60 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAY-K--PKDGQVTLCYRGEMILR 60 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-C--CTTCEEEEEESSSSSST
T ss_pred cCCeEEEECCcHHHHHHHHHhhhc-c--cCCcEEEEEeccchhhc
Confidence 458999999999999999887764 4 11158999999876553
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=93.52 E-value=0.031 Score=46.20 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
-|.|||+|.-|...|..|+++ | ++|.++++++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~-G-----~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 389999999999999999999 9 89999998764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.45 E-value=0.03 Score=43.54 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.||+|||+|..|.-+|..|++. .+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~~-------~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQT-------YEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTTT-------SEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHcC-------CCEEEEeccc
Confidence 3899999999999999998653 6899998754
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.29 E-value=0.042 Score=48.21 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=31.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
-|||.|.|+ |.+|+.++..|.++ | ++|+.+++...
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~-g-----~~V~~~d~~~~ 50 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKN 50 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCCc
Confidence 489999996 99999999999999 8 99999987653
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.27 E-value=0.073 Score=45.60 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=31.0
Q ss_pred eEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 45 kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++.|.| +|.+|.++|..|++. | .+|++.+|+++.+++
T Consensus 27 ~alITGas~GIG~aiA~~la~~-G-----a~Vii~~r~~~~l~~ 64 (294)
T d1w6ua_ 27 VAFITGGGTGLGKGMTTLLSSL-G-----AQCVIASRKMDVLKA 64 (294)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 344555 599999999999999 9 899999999877654
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.23 E-value=0.11 Score=41.61 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=26.1
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEE-EEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~-l~~r~~ 82 (303)
.+||+|.|.|.||..+.+.+..+ . +.+|+ +.+..+
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~-~----dieiVaINd~~~ 37 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKP 37 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSC
T ss_pred cEEEEEECCCHHHHHHHHHHHhC-C----CceEEEEecCCC
Confidence 47999999999999999998765 3 25544 445544
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.12 Score=40.49 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=31.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... | .+|+.+++++++++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~-G-----~~vi~~~~~~~k~~~ 66 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM-G-----AETYVISRSSRKRED 66 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CEEEEEESSSTTHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc-c-----ccccccccchhHHHH
Confidence 7899999999999877666555 8 789999999987764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.04 Score=46.71 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.9
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|+|||||.-|.+-|..|++. | ++|++++++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~-G-----~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS-G-----LNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 79999999999999999999 9 8999998755
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.049 Score=45.96 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=31.4
Q ss_pred eEEEEC-CChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 45 kI~VIG-aG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
++.|.| ++.+|.++|..|++. | ++|.+.+|++++++++
T Consensus 8 ~alITGas~GIG~aia~~la~~-G-----~~Vi~~~r~~~~l~~~ 46 (245)
T d2ag5a1 8 VIILTAAAQGIGQAAALAFARE-G-----AKVIATDINESKLQEL 46 (245)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHGGG
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHHH
Confidence 344445 599999999999999 9 8999999998877654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.90 E-value=0.061 Score=46.71 Aligned_cols=46 Identities=22% Similarity=0.189 Sum_probs=38.6
Q ss_pred hhhhHHHHHhccCCCCCceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 27 ERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
+|.++|+....+ .+++|.|.|+ |.+|+.++..|.+. | ++|+.+|+.
T Consensus 3 ~~~~~~~~~~~~---~~k~iLVTG~tGfIGs~lv~~L~~~-g-----~~V~~~d~~ 49 (341)
T d1sb8a_ 3 SRYEELRKELPA---QPKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNF 49 (341)
T ss_dssp CHHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred chHHHHHHhCCC---CCCEEEEecCCCHHHHHHHHHHHHC-c-----CEEEEEECC
Confidence 577888875554 3478999998 99999999999999 8 999999873
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.87 E-value=0.037 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHHHH-----hcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQD-----SYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~-----~~G~~~~~~~V~l~~r~~~~ 84 (303)
--|.|||+|..|.++|..|++ . | ++|+++++.+..
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~-G-----~~v~vlEr~~~~ 47 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKP-D-----LKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHST-T-----CCEEEECSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccC-C-----CcEEEEcCCCCC
Confidence 348999999999999999974 5 7 899999987653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.80 E-value=0.048 Score=42.69 Aligned_cols=34 Identities=26% Similarity=0.095 Sum_probs=28.2
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..+|+|||+|..|.-+|..|++. | .+|+++.+.+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~-g-----~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRAS-G-----WEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECS
T ss_pred CCCEEEECCcHHHHHHHHHHHHc-C-----CceEEEEecC
Confidence 36899999999999999999998 7 6766665544
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=92.77 E-value=0.046 Score=45.71 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=31.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
..|.|||+|.-|...|..++++ | ++|.++++++.-
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKL-G-----KSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCCCC
Confidence 3599999999999999999999 8 899999998753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.72 E-value=0.12 Score=40.22 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... | .+|+..++++++++.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~-G-----~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM-G-----LHVAAIDIDDAKLEL 66 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHc-C-----CccceecchhhHHHh
Confidence 6899999999999877766655 7 789999999877653
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.71 E-value=0.096 Score=40.50 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=31.6
Q ss_pred CCceEEEE--CCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 42 DPLRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 42 ~~~kI~VI--GaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
...++.|+ |+|.+|..+|..|++. | .+|+++.+.+.-.
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~-G-----~~Vtlv~~~~~~~ 77 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATA-G-----HEVTIVSGVHLAN 77 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHT-T-----CEEEEEESSCTTT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHc-C-----CeEEEEecCCccc
Confidence 33556665 9999999999999999 9 9999999987543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.68 E-value=0.049 Score=47.41 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
..|+|||||.-|.+.|..|.+. | .+|+++++.++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~-G-----~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLREL-G-----RSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CCEEEEEcCCC
Confidence 5799999999999999999998 8 89999998764
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=92.59 E-value=0.056 Score=45.03 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=28.7
Q ss_pred ceE-EEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRI-VGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI-~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
||| .|.|+ +-+|.++|..|++. | .+|.+.+|+++.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~-G-----a~V~~~~~~~~~ 37 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA-G-----HQIVGIDIRDAE 37 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECChHH
Confidence 565 55576 67999999999999 9 899999987643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.56 E-value=0.071 Score=42.46 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=31.6
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCe-eEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... | . .|+++++++++++.
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~-G-----a~~Vi~~~~~~~~~~~ 68 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSL-G-----AENVIVIAGSPNRLKL 68 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----BSEEEEEESCHHHHHH
T ss_pred CEEEEECCCccchhheeccccc-c-----cccccccccccccccc
Confidence 6899999999998877777666 7 5 79999999987653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=92.42 E-value=0.21 Score=41.94 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 33 ~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+...+...-.-++|+|-|.|++|..+|..|.+. | ..|+..+.+...++
T Consensus 29 ~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-G-----akvv~~d~~~~~~~ 76 (230)
T d1leha1 29 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAVS 76 (230)
T ss_dssp HHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred HHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEeecccHHHHH
Confidence 344455444558999999999999999999998 9 78888888765543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.37 E-value=0.065 Score=45.33 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.4
Q ss_pred eEEEE-CC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 45 RIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 45 kI~VI-Ga-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
||++| |+ +-||.++|..|++. | .+|.+++|+++.+++.
T Consensus 3 KValITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~~ 42 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE-G-----LRVFVCARGEEGLRTT 42 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56544 66 67999999999999 9 8999999998877653
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.076 Score=44.66 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=33.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 8 K~~lITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~l~~ 46 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHAT-G-----ARVVAVSRTQADLDS 46 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 67888898 67999999999999 9 899999999887664
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.31 E-value=0.076 Score=45.11 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=34.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|.|+ +.||.++|..|++. | .+|.+.+|+++.++++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~V~i~~r~~~~l~~~ 46 (258)
T d1ae1a_ 7 TTALVTGGSKGIGYAIVEELAGL-G-----ARVYTCSRNEKELDEC 46 (258)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 78999996 78999999999999 9 8999999998877653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.30 E-value=0.045 Score=47.82 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=28.5
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
||||.|.|+ |.+|+.++..|.++ | ++|.++.++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~-g-----~~v~v~~~d 35 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNN-H-----PDVHVTVLD 35 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHH-C-----TTCEEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHC-C-----CCeEEEEEe
Confidence 799999996 99999999999999 8 776666554
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.22 E-value=0.1 Score=38.52 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+++|+|||+|..|.-+|..|+.. + ..+.+|+++.+.+.-+.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~-~--~~g~~Vtli~~~~~il~ 58 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAY-K--ARGGQVDLAYRGDMILR 58 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-S--CTTCEEEEEESSSSSST
T ss_pred cCCeEEEECCChHHHHHHHHhHhh-c--ccccccceecccccccc
Confidence 358999999999999999877653 2 00168999999875443
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.13 E-value=0.075 Score=46.03 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+||.|.|+ |.+|+.++..|.++ | ++|..++|++.+..
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~-g-----~~V~~~~r~~~~~~ 46 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM-G-----ATVKGYSLTAPTVP 46 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCSSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCccH
Confidence 89999996 99999999999999 8 89999999876543
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.1 Score=45.12 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=30.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
|||.|.|+ |.+|+.++..|.++ |. .+|+.+++.....
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~-g~----~~V~~ld~~~~~~ 38 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE-DH----YEVYGLDIGSDAI 38 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS-TT----CEEEEEESCCGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CC----CEEEEEeCCCcch
Confidence 89999999 99999999999888 71 3788888865543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.092 Score=44.30 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=32.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+++|++++++++
T Consensus 8 kv~lITGas~GIG~~ia~~la~~-G-----~~V~l~~r~~~~l~~~ 47 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLEET 47 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 45666688 55999999999999 9 8999999999887654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.55 E-value=0.71 Score=39.37 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=48.8
Q ss_pred cCcceeccCCchhhh-hhHHHHHhccCCCC-CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 14 SNGLIHHTNGSLEER-LDELRRLMGKAEGD-PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
|-|+....+-||++. ...++.++.+.+.. -+||.=||||.-| ++..+++..| .+|+.++.++++++.+
T Consensus 22 S~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~--~a~~~a~~~g-----~~v~gi~ls~~q~~~a 91 (280)
T d2fk8a1 22 SCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGT--TMRRAVERFD-----VNVIGLTLSKNQHARC 91 (280)
T ss_dssp SCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSH--HHHHHHHHHC-----CEEEEEESCHHHHHHH
T ss_pred eeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchH--HHHHHHHhCc-----eeEEEecchHHHHHHH
Confidence 446666667788776 44566777777644 3899999999654 4555665536 7899999999877643
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.16 E-value=0.12 Score=43.30 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHAS-G-----AKVVAVTRTNSDLVS 44 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67888898 57999999999999 9 899999999877654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.13 E-value=0.097 Score=43.84 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=31.4
Q ss_pred ceEEEECC-Ch--HHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~--mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+++.|.|| |. ||.++|..|++. | .+|.+.+|++++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~-G-----a~Vil~~~~~~~~ 45 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQ-G-----AQLVLTGFDRLRL 45 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHT-T-----CEEEEEECSCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHc-C-----CEEEEEeCChHHH
Confidence 67999996 65 999999999999 9 8999999988654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=91.10 E-value=0.11 Score=44.10 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=31.5
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
.+.|.|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 7 valVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~ 45 (264)
T d1spxa_ 7 VAIITGSSNGIGRATAVLFARE-G-----AKVTITGRHAERLEET 45 (264)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 3445565 88999999999999 9 8999999999877653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.09 E-value=0.14 Score=39.65 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=31.4
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
-.+|.|.|+|.+|...+..+... | .+|+..++++++++.
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~-g-----~~v~~~~~~~~r~~~ 66 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAM-G-----LNVVAVDIGDEKLEL 66 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHH
T ss_pred CCEEEEeecccchhhhhHHHhcC-C-----CeEeccCCCHHHhhh
Confidence 37899999999998876666665 7 789999998876653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.07 E-value=0.065 Score=42.32 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=25.5
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
.+|+|||+|..|.-+|..|.+. | .+|.++.+
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~-g-----~~v~i~~~ 34 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQA-G-----YQGLITVV 34 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHH-T-----CCSCEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhc-C-----CceEEEEE
Confidence 4699999999999999999998 8 55555444
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.098 Score=44.44 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=34.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.++++.
T Consensus 15 K~alITGassGIG~aiA~~la~~-G-----~~Vil~~r~~~~l~~~~ 55 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKM-G-----AHVVVTARSKETLQKVV 55 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH
Confidence 67888898 55999999999999 9 89999999998877543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=90.74 E-value=0.12 Score=43.20 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alItGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~~~~ 44 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFARE-G-----ASLVAVDREERLLAE 44 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56778888 55999999999999 9 899999999876643
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.67 E-value=0.14 Score=42.29 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
.||.|.|+ |-+|.++|..|+++ | ++|.+.+|+++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~-G-----~~V~~~~~~~~~ 38 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKN-G-----YTVLNIDLSAND 38 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCchh
Confidence 58999998 89999999999999 9 999999998753
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.14 Score=43.17 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~~ 46 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNS-G-----ARVVICDKDESGGRAL 46 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56888887 78999999999999 9 8999999998876653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.57 E-value=0.15 Score=43.20 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=33.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|.|+ +-+|.++|..|++. | .+|.+++|+++.++++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~ 45 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE-G-----TAIALLDMNREALEKA 45 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56778888 56999999999999 9 8999999998877653
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=90.44 E-value=0.12 Score=41.62 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-|+|||+|.-|...|..+++. | .+|.++++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~-G-----~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY-G-----QKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeccC
Confidence 379999999999999999998 8 8999998753
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=90.33 E-value=0.15 Score=43.42 Aligned_cols=38 Identities=8% Similarity=0.231 Sum_probs=33.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~ 44 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAE-G-----AKVAVLDKSAERLAE 44 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56788888 78999999999999 9 899999999887654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.16 Score=42.81 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=33.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|.|+ +-+|.++|..|++. | .+|++++|++++++++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~-G-----~~Vv~~~r~~~~l~~~ 50 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIEEL 50 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56788887 78999999999999 9 8999999998877653
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.29 E-value=0.15 Score=42.55 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=31.0
Q ss_pred ceEEEECCCh---HHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~---mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
+++.|.|++. +|.++|..|++. | ++|.+.+|+++..+
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~-G-----~~V~i~~~~~~~~~ 45 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHRE-G-----AELAFTYQNDKLKG 45 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSTTTHH
T ss_pred CEEEEECCCCchhHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 6788888754 889999999999 9 89999999976443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.14 Score=43.90 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=29.9
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.+||.|.|+ |.+|+.++..|.++ | ++|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~-g-----~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCC
Confidence 379999998 99999999999998 8 899999863
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.23 E-value=0.16 Score=42.76 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVRE-G-----ARVAIADINLEAARA 44 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHT-T-----EEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56778888 78999999999999 9 999999999877654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.23 Score=38.80 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+|.|+|+|.+|...++.+... | .++++.++++++.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~-G-----a~~i~~~~~~~~~~ 68 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM-G-----AHVVAFTTSEAKRE 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CEEEEeccchHHHHHHHHhhcc-c-----ccchhhccchhHHH
Confidence 7899999999998877666555 7 78888898887654
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.15 E-value=0.26 Score=37.41 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=60.6
Q ss_pred CceEEEECC----------ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcc
Q 022050 43 PLRIVGVGA----------GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCA 112 (303)
Q Consensus 43 ~~kI~VIGa----------G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 112 (303)
.+||+|+|. ++-...++..|... | .+|.+||+.-+..+..+... +.+. .
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~-g-----~~V~~~DP~v~~~~~~~~~~--~~~~-------------~ 71 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGK-G-----YELRIFDRNVEYARVHGANK--EYIE-------------S 71 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT-T-----CEEEEECHHHHHHTTSSSCH--HHHH-------------H
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhh-h-----ccccccCCCCCHHHHhhhhh--hhhh-------------h
Confidence 479999997 46778899999888 8 89999998432111000000 0000 0
Q ss_pred cchhhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCchhHHHHHHHHHHHhhccCCCCE
Q 022050 113 YLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPV 192 (303)
Q Consensus 113 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~~~aDlVIiaVp~~~~~~vl~~l~~~l~~~~~~~i 192 (303)
..+.. .....+++.+++.++|+||++++.....++.. .+.+ +.+
T Consensus 72 ~~~~~-----------------------------~~~~~~~~~e~i~~~D~ivi~t~h~~f~~l~~----~~~~---~~~ 115 (136)
T d1mv8a3 72 KIPHV-----------------------------SSLLVSDLDEVVASSDVLVLGNGDELFVDLVN----KTPS---GKK 115 (136)
T ss_dssp TSHHH-----------------------------HTTBCSCHHHHHHHCSEEEECSCCGGGHHHHH----SCCT---TCE
T ss_pred ccccc-----------------------------cceeehhhhhhhhhceEEEEEeCCHHHHHHHH----HhcC---CCE
Confidence 01110 12245788899999999999999987655432 2333 567
Q ss_pred EEEee
Q 022050 193 IISLA 197 (303)
Q Consensus 193 ivs~~ 197 (303)
|+.+.
T Consensus 116 I~D~~ 120 (136)
T d1mv8a3 116 LVDLV 120 (136)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 77655
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=90.15 E-value=0.15 Score=40.92 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
|.|||+|.-|...|..+++. | .+|.++++++.
T Consensus 6 vvVIGgGpaGl~aA~~aa~~-G-----~kV~vie~~~~ 37 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRGA 37 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSS
T ss_pred EEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence 89999999999999999998 8 89999998653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.10 E-value=0.21 Score=42.04 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=32.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 10 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 48 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAA-G-----ANVAVIYRSAADAVE 48 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCTTHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56777788 55999999999999 9 999999999987654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=90.10 E-value=0.17 Score=42.75 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|-|+ +-||.++|..|++. | .+|.+++|+++.++++
T Consensus 9 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~ 48 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASL-G-----ASVYTCSRNQKELNDC 48 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56788898 56999999999999 9 8999999998877653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.09 E-value=0.11 Score=40.10 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.3
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|.|||+|.+|..-+..|.+. | .+|+++++.
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~-G-----A~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPT-G-----CKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGG-T-----CEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCC
Confidence 48999999999999999999999 8 899999765
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.05 E-value=0.15 Score=41.18 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
=|+|||+|.-|..-|..+++. | .+|.++++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~-G-----~kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQL-G-----FNTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence 389999999999999999998 8 89999997654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.99 E-value=0.13 Score=41.08 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=29.7
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.++|+|||+|.-|..-|..+++. | .+|.++++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~-g-----~~v~vie~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHc-C-----CcEEEEEeec
Confidence 37899999999999988899988 8 7899998654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.21 Score=41.37 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=32.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|.|+ +-+|.++|..|++. | ++|.+.+|+++.++.
T Consensus 6 KvalITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 44 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQ-G-----ASAVLLDLPNSGGEA 44 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEeCChHHHHH
Confidence 45567887 66999999999999 9 899999999987764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.94 E-value=0.18 Score=42.39 Aligned_cols=38 Identities=8% Similarity=0.000 Sum_probs=32.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 45 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE-G-----AKVVFGDILDEEGKA 45 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 55667788 67999999999999 9 899999999887654
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.94 E-value=0.41 Score=37.76 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=32.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+|+|+|.+|...+..+... |. ..|+..|+++++++.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~-G~----~~Vi~~d~~~~kl~~ 67 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAA-GA----SRIIGVGTHKDKFPK 67 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSCGGGHHH
T ss_pred CEEEEECCCchhHHHHHHHHHc-CC----ceeeccCChHHHHHH
Confidence 6899999999999988888777 71 479999999987764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.84 E-value=0.15 Score=45.00 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=28.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~ 79 (303)
|||.|.|+ |.+|+.++..|.+. | ++|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~-g-----~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKK-N-----YEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEe
Confidence 89999998 99999999999999 8 9999997
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.75 E-value=0.18 Score=42.12 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=32.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~~lITGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~l~~ 44 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE-G-----ARLVACDIEEGPLRE 44 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56778887 66999999999999 9 899999999877654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=89.74 E-value=0.17 Score=42.02 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~-G-----a~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQE-G-----AEVTICARNEELLKR 43 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHh
Confidence 67899998 66999999999999 9 899999999876543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=89.66 E-value=0.2 Score=42.10 Aligned_cols=35 Identities=9% Similarity=-0.055 Sum_probs=30.7
Q ss_pred ceEEEECC-C--hHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRIVGVGA-G--AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI~VIGa-G--~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+++.|.|+ | -+|.++|..|++. | .+|.+.+|+++.
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~-G-----a~V~i~~r~~~~ 43 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQ-G-----ATLAFTYLNESL 43 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTT-T-----CEEEEEESSTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 67899997 4 4999999999999 9 899999999753
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.65 E-value=0.18 Score=42.37 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=32.4
Q ss_pred ceEEEE-CC-ChHHHHHHHHHHH---hcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGV-GA-GAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VI-Ga-G~mG~aiA~~La~---~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
-||+|| |+ +-+|.++|..||+ + | ++|.+.+|+++.++++
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~-G-----~~Vv~~~r~~~~l~~~ 49 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSP-G-----SVMLVSARSESMLRQL 49 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCT-T-----CEEEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccC-C-----CEEEEEECCHHHHHHH
Confidence 578877 76 5799999999996 5 7 8999999999877654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.52 E-value=0.16 Score=41.04 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=29.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
..|.|||+|..|...|..+++. | .+|.++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~-G-----~~V~liE~~~ 38 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQL-G-----IPTVLVEGQA 38 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSC
T ss_pred cCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 4599999999999999999999 9 8999998763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.51 E-value=0.2 Score=42.38 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=32.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|.|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 7 KvalITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 45 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRY-G-----AKVVIADIADDHGQK 45 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 55666676 67999999999999 9 899999999887664
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=89.43 E-value=0.15 Score=43.32 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
=|.|||+|.-|.+.|..+++. | .+|.++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~-G-----~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 499999999999999999999 9 8999999865
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.42 E-value=0.18 Score=42.85 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=33.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|.|+ +-||.++|..|++. | .+|.+.+|+++.++++
T Consensus 6 K~alVTGas~GIG~aia~~la~~-G-----a~V~l~~r~~~~l~~~ 45 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQE-G-----ANVTITGRSSERLEET 45 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56777787 77999999999999 9 8999999999877653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.32 E-value=0.21 Score=41.97 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~~lITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 44 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEA-G-----CSVVVASRNLEEASE 44 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67888898 66999999999999 9 899999999887654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=89.19 E-value=0.15 Score=40.41 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=29.2
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+|+|||+|.-|..-|..+++. | .+|+++++..
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~-g-----~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARA-N-----LQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHc-C-----CceEEEEeec
Confidence 6899999999999988888888 8 8999998754
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.17 Score=42.36 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=32.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~-G-----~~Vv~~~r~~~~l~~~ 44 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAAR-G-----AKVIGTATSENGAQAI 44 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHHH
Confidence 44556586 67999999999999 9 8999999998877653
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=89.07 E-value=0.22 Score=42.77 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=38.2
Q ss_pred hHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 30 ~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.+.+.+........-|.|||+|.-|.+-|..+++. | .+|.++++.+
T Consensus 6 ~~~~~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~-G-----~~V~vlEK~~ 52 (317)
T d1qo8a2 6 DKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKA-G-----ANVILVDKAP 52 (317)
T ss_dssp HHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSS
T ss_pred hhhhhhccCCCCCccCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 556666665554446699999999999999999999 9 8999998865
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.00 E-value=0.22 Score=42.05 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|+ +-||.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~ 44 (254)
T d1hdca_ 6 KTVIITGGARGLGAEAARQAVAA-G-----ARVVLADVLDEEGAA 44 (254)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 67889998 56999999999999 9 899999999876654
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=88.97 E-value=0.17 Score=42.64 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHHHH-hcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~-~~G~~~~~~~V~l~~r~~~ 83 (303)
.-|+|||+|.-|.+.|..||+ . | ++|+++++.+.
T Consensus 34 ~DViVIGaGpaGL~aA~~LA~~~-G-----~~V~vlE~~~~ 68 (278)
T d1rp0a1 34 TDVVVVGAGSAGLSAAYEISKNP-N-----VQVAIIEQSVS 68 (278)
T ss_dssp EEEEEECCSHHHHHHHHHHHTST-T-----SCEEEEESSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHcc-C-----CeEEEEecCCC
Confidence 349999999999999999987 5 7 89999998764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=88.96 E-value=0.21 Score=43.34 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=33.4
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|.|+ |.+|+.++..|.++ | ++|....|+.+..+.
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~-G-----~~V~~~vR~~~~~~~ 50 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEH-G-----YKVRGTARSASKLAN 50 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCchhHHH
Confidence 79999998 99999999999999 9 899998998765543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.93 E-value=0.8 Score=36.28 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=38.0
Q ss_pred hhhhhHHHHHhccCCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
++|++.+..++..--.+..||.=||||.- .++..|++. | .+|+.+|.+++.++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~ILDiGcG~G--~~~~~la~~-~-----~~v~giD~S~~~i~~a 75 (226)
T d1ve3a1 21 RSRIETLEPLLMKYMKKRGKVLDLACGVG--GFSFLLEDY-G-----FEVVGVDISEDMIRKA 75 (226)
T ss_dssp HHHHHHHHHHHHHSCCSCCEEEEETCTTS--HHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCcc--hhhhhHhhh-h-----cccccccccccchhhh
Confidence 55666665554321123478999999983 355678887 7 7899999998877543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.90 E-value=0.17 Score=42.85 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=33.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+++|+++.+++.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~-G-----a~V~~~~r~~~~l~~~ 48 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGF-G-----AVIHTCARNEYELNEC 48 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 67888888 56999999999999 9 8999999998877653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.16 Score=42.84 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=32.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 12 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~~ 51 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATA-G-----ASVVVSDINADAANHV 51 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 55667776 77999999999999 9 8999999998877653
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.72 E-value=0.17 Score=43.03 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 5 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~~ 44 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKE-G-----AQVTITGRNEDRLEET 44 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56777787 66999999999999 9 8999999998877653
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=88.67 E-value=0.18 Score=43.95 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-|.|||+|.-|+..|..|+++ | ++|.++.+.
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA-G-----VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHC-c-----CeEEEEecC
Confidence 378999999999999999999 9 899999985
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.67 E-value=0.25 Score=40.26 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=31.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++..+.
T Consensus 2 K~alITGas~GIG~aiA~~la~~-G-----a~V~i~~~~~~~~~~ 40 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKAR-G-----YRVVVLDLRREGEDL 40 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH-T-----CEEEEEESSCCSSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCcccccc
Confidence 45566676 88999999999999 9 899999999876543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=88.53 E-value=0.2 Score=42.10 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=31.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|.|+ +-+|.++|..|++. | .+|.+++|+++.+++
T Consensus 11 KvalITGas~GIG~a~a~~la~~-G-----a~V~~~~r~~~~l~~ 49 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKS-V-----SHVICISRTQKSCDS 49 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTT-S-----SEEEEEESSHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 34456687 67999999999999 9 899999999887765
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.51 E-value=0.34 Score=38.39 Aligned_cols=39 Identities=15% Similarity=0.040 Sum_probs=33.3
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
..|+|+|+|.+|...+..+... |. .+|+..|+++++++.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~-G~----~~Vi~vd~~~~kl~~ 69 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSA-GA----SRIIGIDLNKDKFEK 69 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEECSCGGGHHH
T ss_pred CEEEEECCCchhHHHHHHHHHc-CC----ceEEEecCcHHHHHH
Confidence 5799999999999988888777 71 479999999998764
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.45 E-value=0.21 Score=43.05 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=28.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
+||.|.|+ |.+|+.++..|.++ | ++|+.+|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~-g-----~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEA-G-----YLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEEC
Confidence 68999998 99999999999998 8 89999875
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.39 E-value=0.27 Score=41.50 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=33.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++.
T Consensus 5 K~alITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~~ 44 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAE-G-----AKLSLVDVSSEGLEAS 44 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 56777788 56999999999999 9 8999999999877653
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.39 E-value=0.17 Score=40.63 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.0
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++||.|.|+ |.+|..++..|.++ |++ ..|....|++
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~-~~~---~~v~~~~r~~ 38 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSE-PTL---AKVIAPARKA 38 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHC-TTC---CEEECCBSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-CCe---EEEEEEeCCc
Confidence 589999999 99999999999998 721 1455555544
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=88.38 E-value=0.14 Score=43.53 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=27.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
++||.|.|+ |.+|+.++..|.++ | +.|++.++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~-g-----~~vi~~~~~ 35 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR-G-----DVELVLRTR 35 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-T-----TEEEECCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-c-----CEEEEecCc
Confidence 479999999 99999999999998 8 777665543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.34 E-value=0.3 Score=40.69 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=30.6
Q ss_pred ceEEEECCC---hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGaG---~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+++.|.||+ -+|.++|..|++. | .+|.+.+|+++..
T Consensus 9 K~alITGas~~~GIG~aiA~~la~~-G-----a~V~i~~~~~~~~ 47 (256)
T d1ulua_ 9 KKALVMGVTNQRSLGFAIAAKLKEA-G-----AEVALSYQAERLR 47 (256)
T ss_dssp CEEEEESCCCSSSHHHHHHHHHHHT-T-----CEEEEEESSGGGH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHH
Confidence 678888974 4999999999999 9 8999999987543
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=88.30 E-value=0.21 Score=42.91 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
=+.|||+|.-|+.+|..|+++ | ++|.++.+..
T Consensus 6 DviIVGsG~aG~v~A~~La~~-G-----~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA-G-----YKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhC-C-----CeEEEEecCC
Confidence 389999999999999999999 9 8999998753
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.27 E-value=0.18 Score=42.49 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=32.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
+++.|.|+ +-+|.++|..|++. | .+|.+.+|+++.++++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~~~~~~~~~~ 46 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGE-G-----AKVAFSDINEAAGQQL 46 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH
Confidence 45666676 56999999999999 9 8999999998876653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=88.17 E-value=0.24 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
=|+|||+|.-|..-|..+++. | .+|.++++.+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~-G-----~~V~viE~~~~ 40 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE-G-----LKVAIVERYKT 40 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 489999999999999999999 8 89999998663
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.03 E-value=0.21 Score=41.98 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=32.2
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|-|+ +-||.++|..|++. | .+|.+.+|+++.+++
T Consensus 7 K~alVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~ 45 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEE-G-----AKVMITGRHSDVGEK 45 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 55667786 67999999999999 9 899999999877654
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=87.94 E-value=0.21 Score=38.77 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.5
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-|+|||+|..|..-|..+++. | .+|.+++++
T Consensus 3 DViIIGgGpaGl~AAi~aar~-G-----~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK-G-----IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc-C-----CeEEEEEEe
Confidence 489999999999999999988 8 789999864
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.93 E-value=0.26 Score=39.53 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=28.3
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.|||+|..|...|..+++. | .+|.+++++.
T Consensus 6 viIIG~GpaG~~aA~~aar~-G-----~kV~vIEk~~ 36 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL-G-----ARAAVVESHK 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHC-C-----CEEEEEeccC
Confidence 78999999999999999998 8 8999998754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.85 E-value=0.67 Score=35.96 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=32.8
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+|+|+|.+|...+..++.. | ...|+..++++++++.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~-g----~~~Vi~~~~~~~rl~~ 68 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSA-G----AKRIIAVDLNPDKFEK 68 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T----CSEEEEECSCGGGHHH
T ss_pred CEEEEEecCCccchHHHHHHHH-h----hchheeecchHHHHHH
Confidence 6899999999999988888876 6 1579999999987764
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.77 E-value=0.27 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
-+.|||+|.-|...|..+++. | .+|.++++..
T Consensus 5 DviVIG~GpaGl~aA~~aar~-G-----~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL-G-----QKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecCC
Confidence 389999999999999999998 8 8999998764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.31 Score=40.78 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|-|+ +-+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 4 KvalITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 42 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLK-G-----AKVALVDWNLEAGVQ 42 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45566677 67999999999999 9 899999999887654
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=87.64 E-value=1.3 Score=34.28 Aligned_cols=33 Identities=9% Similarity=0.090 Sum_probs=27.5
Q ss_pred ceEEEECC--ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA--GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa--G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.||++||= .++-.++...++.- | .++++..+.+
T Consensus 4 ~ki~~vGD~~nnV~~Sli~~~~~~-g-----~~i~~~~P~~ 38 (161)
T d1vlva2 4 VKVVFMGDTRNNVATSLMIACAKM-G-----MNFVACGPEE 38 (161)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHT-T-----CEEEEESCGG
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc-C-----CEEEEecchh
Confidence 69999994 57889999888886 8 8999888764
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.64 E-value=0.27 Score=41.53 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=32.5
Q ss_pred ceEEEE--CCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VI--GaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|+|++| |++-+|.++|..|++..| ..|++.+|+++++++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g-----~~Vi~~~r~~~~~~~ 43 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFS-----GDVVLTARDVTRGQA 43 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSS-----SEEEEEESSHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCC-----CEEEEEECCHHHHHH
Confidence 789888 668899999999997415 799999999987764
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.58 E-value=0.31 Score=42.03 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+.+.|.|+ +-+|.++|..|++. | .+|.+.+|+++++++
T Consensus 13 KvalITGas~GIG~aia~~la~~-G-----a~Vvi~~r~~~~l~~ 51 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLEL-G-----SNVVIASRKLERLKS 51 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56778887 66999999999999 9 899999999887764
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=87.55 E-value=0.15 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G 67 (303)
|||.|.|+ |.+|+.++..|.+. |
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~-g 24 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPV-G 24 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTT-S
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-C
Confidence 89999998 99999999999988 7
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.50 E-value=0.78 Score=35.62 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=31.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... |. ..|+.+++++++++.
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~-g~----~~vv~~~~~~~k~~~ 72 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVM-TP----ATVIALDVKEEKLKL 72 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CC----CEEEEEESSHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhh-cC----cccccccchhHHHHH
Confidence 6799999999999988877666 61 467888998876653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=87.16 E-value=0.24 Score=42.47 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.=|.|||+|.-|...|..+++. | .+|.++++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~-G-----~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDA-G-----AKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 3499999999999999999999 9 8999999865
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.08 E-value=0.34 Score=41.02 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=30.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+||.|.|+ |.+|+.++..|.++ | ++|+.++|...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~-g-----~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK-G-----YRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECCCC
Confidence 58999998 99999999999999 8 99999998764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=86.69 E-value=0.3 Score=42.46 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=31.7
Q ss_pred CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 39 ~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
.+...-=+.|||+|.-|+.+|..|+++ | .+|.++.+.
T Consensus 3 ~~~~~~dvIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG 39 (370)
T d3coxa1 3 ADGDRVPALVIGSGYGGAVAALRLTQA-G-----IPTQIVEMG 39 (370)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSS
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 444445689999999999999999999 9 899999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=86.64 E-value=2.3 Score=35.52 Aligned_cols=89 Identities=13% Similarity=0.055 Sum_probs=59.0
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhhhhhHHHHHhhhhhHHHHhhhhcccchhhhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 121 (303)
..++|.=+|||.-. ++..+++. | .+|+.+|.+++.++..+++. + .| ++
T Consensus 120 ~g~~VLDiGcGsG~--l~i~aa~~-g-----~~V~gvDis~~av~~A~~na-----~----------~n-----~~---- 167 (254)
T d2nxca1 120 PGDKVLDLGTGSGV--LAIAAEKL-G-----GKALGVDIDPMVLPQAEANA-----K----------RN-----GV---- 167 (254)
T ss_dssp TTCEEEEETCTTSH--HHHHHHHT-T-----CEEEEEESCGGGHHHHHHHH-----H----------HT-----TC----
T ss_pred ccCEEEEcccchhH--HHHHHHhc-C-----CEEEEEECChHHHHHHHHHH-----H----------Hc-----CC----
Confidence 34789999999743 44556776 7 78999999998876543210 0 01 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCchhHHHHHHHHHHHhhc
Q 022050 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKE 186 (303)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d~~~a~--~~aDlVIiaVp~~~~~~vl~~l~~~l~~ 186 (303)
..-....|..+.. ...|+|+..+....+.++++++.+.++|
T Consensus 168 ------------------------~~~~~~~d~~~~~~~~~fD~V~ani~~~~l~~l~~~~~~~Lkp 210 (254)
T d2nxca1 168 ------------------------RPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVP 210 (254)
T ss_dssp ------------------------CCEEEESCHHHHGGGCCEEEEEEECCHHHHHHHHHHHHHHEEE
T ss_pred ------------------------ceeEEeccccccccccccchhhhccccccHHHHHHHHHHhcCC
Confidence 0011223443332 4689999888888888999999999998
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.33 Score=41.58 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=30.6
Q ss_pred ceE-EEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCch
Q 022050 44 LRI-VGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (303)
Q Consensus 44 ~kI-~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (303)
+|| .|.|+ |.+|+.++..|.++ | ++|+.++|....
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~-g-----~~V~~i~r~~~~ 37 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK-G-----YEVHGIVRRSSS 37 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC-c-----CEEEEEECCCcc
Confidence 589 68888 99999999999999 9 999999997643
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=86.44 E-value=0.33 Score=42.48 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeE-EEEec
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLI-RIWRR 80 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V-~l~~r 80 (303)
|||.|.|+ |.+|+.++..|.++ | ++| ..+++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~-g-----~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKN-T-----QDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH-C-----SCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEEeC
Confidence 89999998 99999999999999 8 764 44554
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=86.40 E-value=0.38 Score=39.99 Aligned_cols=33 Identities=27% Similarity=0.145 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.+.|||+|.-|...|..+++. | ..|.++.+.+.
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~-G-----~kv~vve~~~~ 76 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAM-G-----GRQLIVDRWPF 76 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCc
Confidence 399999999999999999998 8 88999988653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.37 E-value=0.28 Score=39.75 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
=|.|||+|.-|..-|..+++. | .+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~-G-----~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKF-D-----KKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGG-C-----CCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 378999999999999999999 9 8999998654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.35 E-value=0.51 Score=37.25 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=31.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|+|+|+|.+|...+..+... |. ..|++.++++++++.
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~-Ga----~~Vi~~d~~~~r~~~ 68 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIA-GA----SRIIAIDINGEKFPK 68 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEECSCGGGHHH
T ss_pred CEEEEECCChHHHHHHHHHHHh-CC----ceeeeeccchHHHHH
Confidence 6899999999999988877766 71 478889999887653
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.25 E-value=0.4 Score=39.54 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=30.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
++|.|.|+ |.+|.++|..|+++ | .+|.+.++++.
T Consensus 3 K~vlITGas~GIG~a~a~~l~~~-G-----~~V~~~~~~~~ 37 (236)
T d1dhra_ 3 RRVLVYGGRGALGSRCVQAFRAR-N-----WWVASIDVVEN 37 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 78999999 77999999999999 9 89999988764
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.24 E-value=0.89 Score=36.13 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=28.6
Q ss_pred ceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
++|+|||.+. +|..+|..|++. | ..|++++...
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~-g-----atVt~~~~~t 73 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHSKT 73 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTTC
T ss_pred ceEEEEecCCccchHHHHHHHhc-c-----CceEEEeccc
Confidence 8999999966 899999999998 8 7898877654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=86.17 E-value=0.27 Score=43.16 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.|||+|.-|+.+|..|+++ | .+|.++.+..
T Consensus 5 ~IIVGsG~aG~v~A~rLae~-g-----~~VlvLEaG~ 35 (360)
T d1kdga1 5 YIIVGAGPGGIIAADRLSEA-G-----KKVLLLERGG 35 (360)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred EEEECcCHHHHHHHHHHhhC-C-----CeEEEEEccC
Confidence 68999999999999999999 8 8999998764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=86.14 E-value=0.36 Score=40.13 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=31.1
Q ss_pred ceE-EEECC-ChHHHHHHHHHHHhcCCC--CCCeeEEEEecCCchhhhh
Q 022050 44 LRI-VGVGA-GAWGSVFTAMLQDSYGYL--RDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 44 ~kI-~VIGa-G~mG~aiA~~La~~~G~~--~~~~~V~l~~r~~~~~~~~ 88 (303)
++| .|-|+ +-+|.++|..|++. |.- .....|.+++|+++.++++
T Consensus 1 K~VvlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~~~l~~~ 48 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKI 48 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCHHHHHHH
Confidence 455 45587 66999999999999 820 0001389999998877653
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.86 E-value=0.99 Score=31.01 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=30.8
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.++|.|.|+ |.+|+...+.+... | .+|+...+++++.+.
T Consensus 32 ~~~vlI~gasGgVG~~aiQlak~~-G-----~~Vi~~t~s~~k~~~ 71 (77)
T d1o8ca2 32 DGEIVVTGASGGVGSTAVALLHKL-G-----YQVVAVSGRESTHEY 71 (77)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHT-T-----CCEEEEESCGGGHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHHHHc-C-----CeEEEEECCHHHHHH
Confidence 367999888 99999877765555 8 789999999887654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.84 E-value=0.47 Score=39.65 Aligned_cols=36 Identities=11% Similarity=0.199 Sum_probs=30.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (303)
+++.|-|+ +-+|.++|..|++. | .+|.+.+|+++..
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----~~V~~~~~~~~~~ 42 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFARE-G-----ALVALCDLRPEGK 42 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSTTHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHH
Confidence 56777775 88999999999999 9 8999999998754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=85.82 E-value=0.57 Score=36.50 Aligned_cols=39 Identities=13% Similarity=-0.020 Sum_probs=33.0
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|-+|...+..++.. |. ..|+..++++++.+.
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~-g~----~~Vi~~~~~~~k~~~ 68 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAA-GA----ARIIGVDINKDKFAK 68 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEECSCGGGHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHc-CC----ceEEeecCcHHHHHH
Confidence 6899999999999999988887 61 589999999987654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=85.73 E-value=0.38 Score=40.33 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=26.7
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.+.|.|+ +-||.++|..|++. | .+|.+.+|++
T Consensus 6 ~alITGas~GIG~aiA~~la~~-G-----a~V~~~~r~~ 38 (260)
T d1x1ta1 6 VAVVTGSTSGIGLGIATALAAQ-G-----ADIVLNGFGD 38 (260)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT-T-----CEEEEECCSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 4455566 66999999999999 9 8999999975
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.72 E-value=0.43 Score=39.61 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=32.7
Q ss_pred ceEEEECCC-hHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG-~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
+++.|.|++ -+|.++|..|++. | .+|.+.+|+++..++
T Consensus 8 K~~lITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~ 46 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAAD-G-----HKVAVTHRGSGAPKG 46 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSSCCCTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCcchhcC
Confidence 678888884 6999999999999 9 899999999876543
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.69 E-value=0.67 Score=40.15 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=32.1
Q ss_pred cCHHHHhc--CCCEEEEec-Cc-hhHHHHHHHHHHHhhccCCCCEEEEeeccCcc
Q 022050 152 TNLQEAVW--DADIVINGL-PS-TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (303)
Q Consensus 152 ~d~~~a~~--~aDlVIiaV-p~-~~~~~vl~~l~~~l~~~~~~~iivs~~nGi~~ 202 (303)
.++.++++ ++|++|-+. +. -..+++++.++.+.+ +.+|..++|....
T Consensus 96 ~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~----~PIIFaLSNPt~~ 146 (294)
T d1pj3a1 96 DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINE----RPVIFALSNPTAQ 146 (294)
T ss_dssp SSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCS----SCEEEECCSSGGG
T ss_pred hHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCC----CcEEEEccCCCCc
Confidence 46777765 667666654 33 357889998887654 4788888887654
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.69 E-value=0.26 Score=40.95 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=33.1
Q ss_pred CceEEEECC-ChHHHHHHHHHH---HhcCCCCCCeeEEEEecCCchhhhh
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQ---DSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La---~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
|++|.|-|+ +-+|.++|..|+ +. | +.|++.+|+++.++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~-g-----~~V~~~~r~~~~~~~~ 45 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQP-P-----QHLFTTCRNREQAKEL 45 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSC-C-----SEEEEEESCTTSCHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHH
Confidence 567999998 779999999886 45 6 7999999999887653
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=85.67 E-value=0.41 Score=38.00 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|.|||+|.-|..-|..+++. | .+|.++++.+
T Consensus 6 viIIGgGpAGl~aA~~aar~-G-----~~V~viE~~~ 36 (229)
T d3lada1 6 VIVIGAGPGGYVAAIKSAQL-G-----LKTALIEKYK 36 (229)
T ss_dssp EEEECCSHHHHHHHHHHHHH-T-----CCEEEEECCB
T ss_pred EEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 89999999999999999999 8 8999998754
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=85.62 E-value=0.42 Score=41.82 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=28.2
Q ss_pred CceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 43 ~~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
.|||.|.|+ |.+|+.++..|.++.| ++|+++|+
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~-----~~V~~~D~ 35 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTN-----HSVVIVDS 35 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-----CEEEEEEC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCC-----CEEEEEec
Confidence 489999998 9999999999986425 89999984
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.59 E-value=0.39 Score=39.88 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=28.5
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 46 I~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+.|||+|.-|...|..+++. | ..|.+++++.
T Consensus 4 viVIG~G~aG~~aA~~aa~~-G-----~~V~liE~~~ 34 (259)
T d1onfa1 4 LIVIGGGSGGMAAARRAARH-N-----AKVALVEKSR 34 (259)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 78999999999999999999 9 8999999753
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=85.58 E-value=0.4 Score=40.46 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=27.6
Q ss_pred eEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 022050 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (303)
Q Consensus 45 kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r 80 (303)
||.|.|+ |.+|+.++..|.++ | ++|+.+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~-g-----~~V~~id~ 32 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ-G-----IDLIVFDN 32 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEEC
T ss_pred EEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEEC
Confidence 7999988 99999999999999 8 89999875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.41 E-value=2.4 Score=36.18 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=39.2
Q ss_pred cccCcceeccCCchhhhhhHHHHHhcc-CCCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 12 LSSNGLIHHTNGSLEERLDELRRLMGK-AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|--||.+.=|. .-|-.-.|+.-..++ .-..++||.|||.|..|.+ ..+.+..+ ...|++++.+++.++.
T Consensus 50 L~LDg~~q~~e-~de~~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~--r~~l~~~~----~~~i~~VEiD~~Vi~~ 119 (290)
T d1xj5a_ 50 LVLDGVIQLTE-RDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVL--REVARHAS----IEQIDMCEIDKMVVDV 119 (290)
T ss_dssp EEETTEEEEET-TTHHHHHHHHHHHHHTTSSCCCEEEEETCSSSHHH--HHHTTCTT----CCEEEEEESCHHHHHH
T ss_pred EEECCeEeeec-cchhHHHHHHhhHHHhhCCCCcceEEecCCchHHH--HHHHhccc----ceeeEEecCCHHHHHH
Confidence 33355544332 224445564432222 2245689999999976554 34443312 1479999999987654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.38 E-value=1.2 Score=38.69 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred ccccCcceeccCCchhhhhhHHHHHhccC-CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 11 SLSSNGLIHHTNGSLEERLDELRRLMGKA-EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.|--||-+..|... |-+-.|+.--.++. -..++||.|||.|.-|.+ ..+.+..+ ...|++++.+++.++.
T Consensus 75 ~L~LDg~~q~~e~d-e~~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~--rellk~~~----v~~v~~VEID~~Vv~~ 145 (312)
T d2b2ca1 75 VLVLDGIVQATERD-EFSYQEMLAHLPMFAHPDPKRVLIIGGGDGGIL--REVLKHES----VEKVTMCEIDEMVIDV 145 (312)
T ss_dssp EEEETTEEEEESSS-SSHHHHHHHHHHHHHSSSCCEEEEESCTTSHHH--HHHTTCTT----CCEEEEECSCHHHHHH
T ss_pred EEEECCceeeeccc-HHHHHHHhhhHHHhcCCCCCeEEEeCCCchHHH--HHHHHcCC----cceEEEEcccHHHHHH
Confidence 45556777665432 33445655322221 234689999999975544 34444312 1479999999987653
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=85.37 E-value=0.73 Score=36.57 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=28.1
Q ss_pred CceEEEECCCh-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 43 ~~kI~VIGaG~-mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
-++|+|||-+. +|..+|..|.+. | ..|++++..
T Consensus 37 GK~v~VIGrS~~VG~Pla~lL~~~-g-----atVt~~h~~ 70 (166)
T d1b0aa1 37 GLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHRF 70 (166)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECSS
T ss_pred cceEEEEeccccccHHHHHHHHHh-h-----ccccccccc
Confidence 48999999977 999999999998 7 788877654
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.34 E-value=0.33 Score=43.26 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.7
Q ss_pred eEEEECCChHHHHHHHHHHH------hcCCCCCCeeEEEEecCCc
Q 022050 45 RIVGVGAGAWGSVFTAMLQD------SYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 45 kI~VIGaG~mG~aiA~~La~------~~G~~~~~~~V~l~~r~~~ 83 (303)
=|.|||+|.-|++.|..||+ + | .+|.++++..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~-G-----l~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEK-D-----LRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTC-C-----CCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcC-C-----CEEEEEcCCCC
Confidence 49999999999999999997 6 7 89999999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.04 E-value=0.53 Score=37.89 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=29.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+|.+|...+..+... |. ..|++.++++++++.
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~-ga----~~Vi~~d~~~~rl~~ 65 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLL-GA----AVVIVGDLNPARLAH 65 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESCHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhh-cc----cceeeecccchhhHh
Confidence 6899999999997766665554 51 478899999887654
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.93 E-value=2.2 Score=33.80 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=28.3
Q ss_pred ceEEEECC--ChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGA--GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGa--G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
.||++||= -++..+++..++.- | .++++..+..
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~-G-----~~l~l~~P~~ 40 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKL-G-----MDVRIAAPKA 40 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHT-T-----CEEEEECCGG
T ss_pred CEEEEEcCCcchHHHHHHHHHHHc-C-----CEEEEEccHH
Confidence 78999994 48999999999887 8 8999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=84.86 E-value=1 Score=34.65 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=31.8
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.+|.|+|+ |.+|...+..+... |. ..|+++++++++.+.
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~-g~----~~V~~~~~~~~~~~~ 68 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAV-SG----ATIIGVDVREEAVEA 68 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH-TC----CEEEEEESSHHHHHH
T ss_pred CEEEEEeccccceeeeeeccccc-cc----ccccccccchhhHHH
Confidence 68999995 99999988888777 72 589999999876653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.78 E-value=0.49 Score=40.21 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=30.3
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++.|.|| |.+|+.++..|.++ | ++|+.++|...
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~-g-----~~V~~~~r~~~ 36 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGK-G-----YEVHGLIRRSS 36 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHC-c-----CEEEEEECCCc
Confidence 67888898 99999999999999 9 99999998643
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.40 E-value=0.34 Score=35.10 Aligned_cols=33 Identities=12% Similarity=-0.011 Sum_probs=26.4
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
+||+|||+|+=|.-+|..|+.. + ..|++..|..
T Consensus 33 K~VlVVG~g~Sa~dia~~l~~~-a-----k~v~~~~~r~ 65 (107)
T d2gv8a2 33 ESVLVVGGASSANDLVRHLTPV-A-----KHPIYQSLLG 65 (107)
T ss_dssp CCEEEECSSHHHHHHHHHHTTT-S-----CSSEEEECTT
T ss_pred CeEEEECCCCCHHHHHHHHHHh-c-----CEEEEEEecC
Confidence 8899999999999999999886 5 4555554444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=84.23 E-value=0.38 Score=37.26 Aligned_cols=39 Identities=15% Similarity=0.002 Sum_probs=32.5
Q ss_pred CceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhhh
Q 022050 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRAT 89 (303)
Q Consensus 43 ~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~~ 89 (303)
..||..+|||.- ..+..||+. | ++|+.+|.+++.++..+
T Consensus 21 ~~rvLd~GCG~G--~~a~~la~~-G-----~~V~gvD~S~~~i~~a~ 59 (201)
T d1pjza_ 21 GARVLVPLCGKS--QDMSWLSGQ-G-----YHVVGAELSEAAVERYF 59 (201)
T ss_dssp TCEEEETTTCCS--HHHHHHHHH-C-----CEEEEEEECHHHHHHHH
T ss_pred CCEEEEecCcCC--HHHHHHHHc-C-----CceEeecccHHHHHHHH
Confidence 479999999974 467789999 9 89999999998876543
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.77 E-value=0.65 Score=33.11 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=27.9
Q ss_pred ceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 44 ~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
|||.|||.|.=-.+||..|.++ . ++++++--|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s-~-----~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQ-G-----YEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHT-T-----CEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CeEEEecCCc
Confidence 8999999999999999999987 6 7777764343
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=83.48 E-value=3.2 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=28.8
Q ss_pred ceEEEECCC--hHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAG--AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG--~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
.||+++|=| ++..+++..++.- | .+++++.+.+-
T Consensus 6 l~i~~vGD~~nnv~~Sli~~~~~~-g-----~~l~~~~P~~~ 41 (183)
T d1duvg2 6 MTLVYAGDARNNMGNSMLEAAALT-G-----LDLRLVAPQAC 41 (183)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHH-C-----CEEEEECCGGG
T ss_pred CEEEEEcCCccHHHHHHHHHHHHc-C-----CEEEEEechHh
Confidence 799999955 7999999999887 8 89999988653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.36 E-value=1.4 Score=37.68 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=40.8
Q ss_pred cccCcceeccCCchhhhhhHHHHHhccC-CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 12 LSSNGLIHHTNGSLEERLDELRRLMGKA-EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
|.-+|.+.-|.. -|-.-.|+.--.++. -..++||.|||.|.-+.+ ..+.+..+ ..+|++++.+++.++.
T Consensus 48 L~lDg~~q~~~~-de~~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~--~~~l~~~~----~~~v~~vEiD~~Vv~~ 117 (285)
T d2o07a1 48 LVLDGVIQCTER-DEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVL--REVVKHPS----VESVVQCEIDEDVIQV 117 (285)
T ss_dssp EEETTEEEEETT-THHHHHHHHHHHHHTTSSSCCEEEEEECTTSHHH--HHHTTCTT----CCEEEEEESCHHHHHH
T ss_pred EEECCcEEEecC-CHHHHHHHhccHhhhhCcCcCeEEEeCCCchHHH--HHHHHcCC----cceeeeccCCHHHHHH
Confidence 455566655542 344455555322222 235689999999975443 44443212 1589999999987653
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=83.28 E-value=1 Score=37.30 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCC
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~ 82 (303)
...||.|+|||+-|..+|..+.+. |. .+++++|+.-
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~-~~----~~i~~~D~~G 60 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRKG 60 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHh-cc----cceEeeccee
Confidence 348999999999999999999887 73 6899999874
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=82.80 E-value=0.44 Score=40.18 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=30.3
Q ss_pred ceEEEECCC---hHHHHHHHHHHHhcCCCCCCeeEEEEecCCc
Q 022050 44 LRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (303)
Q Consensus 44 ~kI~VIGaG---~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~ 83 (303)
+++.|.|++ -+|.++|..|++. | .+|.+.+|++.
T Consensus 9 K~alVTGass~~GIG~aiA~~la~~-G-----a~Vvi~~~~~~ 45 (297)
T d1d7oa_ 9 KRAFIAGIADDNGYGWAVAKSLAAA-G-----AEILVGTWVPA 45 (297)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHT-T-----CEEEEEEEHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHHC-C-----CEEEEEeCchh
Confidence 789999986 4999999999999 9 89999998764
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=82.49 E-value=1.5 Score=37.29 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred ccccCcceeccCCchhhhhhHHHHHhccC-CCCCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 11 SLSSNGLIHHTNGSLEERLDELRRLMGKA-EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
.|--||-+..|.. .|-.-.|+.-..++. -..+++|.|||.|.-+.+ ..+.+..+ ...|++++.+++.++.
T Consensus 44 ~L~LDg~~q~~~~-de~~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~--~~~l~~~~----~~~i~~VEID~~Vi~~ 114 (274)
T d1iy9a_ 44 MLFLDGMVMTSEK-DEFVYHEMVAHVPLFTHPNPEHVLVVGGGDGGVI--REILKHPS----VKKATLVDIDGKVIEY 114 (274)
T ss_dssp EEEETTEEEEETT-THHHHHHHHHHHHHHHSSSCCEEEEESCTTCHHH--HHHTTCTT----CSEEEEEESCHHHHHH
T ss_pred EEEECCceeeecC-chhhchhhhccchhhccCCcceEEecCCCCcHHH--HHHHhcCC----cceEEEecCCHHHHHH
Confidence 4555676665543 244445555322222 234689999999975443 33433212 1589999999987653
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=82.31 E-value=0.2 Score=42.85 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.9
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G 67 (303)
|||.|.|+ |.+|+.++..|.++ |
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~-g 24 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAG-A 24 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-S
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C
Confidence 89999998 99999999999998 8
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.94 E-value=0.61 Score=38.58 Aligned_cols=40 Identities=18% Similarity=0.008 Sum_probs=31.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (303)
++|.|-|+ +-+|.++|..|++. |. ...|.+.+|+++++++
T Consensus 4 KtilITGassGIG~a~a~~la~~-G~---~~~Vi~~~R~~~~~~~ 44 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKD-KN---IRHIIATARDVEKATE 44 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTC-TT---CCEEEEEESSGGGCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CC---CCEEEEEeCCHHHHHH
Confidence 67888888 78999999999998 81 0268888999877654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.33 E-value=0.6 Score=36.42 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=29.5
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (303)
.+|.|.|+ |.+|...++.+... | ..|+...+++++.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~-g-----~~vi~~~~~~~~~~ 64 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMI-G-----ARIYTTAGSDAKRE 64 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHH-T-----CEEEEEESSHHHHH
T ss_pred CEEEEECCCCCcccccchhhccc-c-----ccceeeeccccccc
Confidence 68999886 99999987777666 7 78888888876554
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.76 E-value=0.86 Score=39.10 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=27.7
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~r~ 81 (303)
+.|.|.|+ |.+|+.++..|.++ | ++|+++++-
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~-g-----~~V~~~d~~ 34 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIEN-G-----YDCVVADNL 34 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-c-----CeEEEEECC
Confidence 34778887 99999999999999 8 899999863
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.44 E-value=3.7 Score=32.89 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCceEEEECCChHHHHHHHHHHHhcCCCCCCeeEEEEecCCchhhhh
Q 022050 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (303)
Q Consensus 42 ~~~kI~VIGaG~mG~aiA~~La~~~G~~~~~~~V~l~~r~~~~~~~~ 88 (303)
..+||.=||||. | .++..|++. | .+|+.+|.+++.++.+
T Consensus 41 ~~~~iLDiGcGt-G-~~~~~l~~~-~-----~~v~gvD~s~~mi~~a 79 (251)
T d1wzna1 41 EVRRVLDLACGT-G-IPTLELAER-G-----YEVVGLDLHEEMLRVA 79 (251)
T ss_dssp CCCEEEEETCTT-C-HHHHHHHHT-T-----CEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCC-C-ccchhhccc-c-----eEEEEEeecccccccc
Confidence 346899999997 3 445678888 8 7899999998776643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.31 E-value=0.65 Score=38.72 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.6
Q ss_pred ceEEEECC-ChHHHHHHHHHHHhcCCCCCCeeEEEEe-cCCchhhh
Q 022050 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR-RPGRSVDR 87 (303)
Q Consensus 44 ~kI~VIGa-G~mG~aiA~~La~~~G~~~~~~~V~l~~-r~~~~~~~ 87 (303)
+.+.|.|+ +-+|.++|..|++. | ++|++.+ ++++.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~Vvi~~~~~~~~~~~ 46 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRR-G-----ASVVVNYGSSSKAAEE 46 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEcCCChHHHHH
Confidence 46677777 66999999999999 9 8998854 45444443
|