Citrus Sinensis ID: 022069

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MEEEQEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV
Secondary Structure (PSIPRED)
cHHHHHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEEccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHEEEEEHHHHHHEEHHHEHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccEEEEccccccccccccccccccEEEcEccccccccccccccccEEEEEEEcccccccEEEccccccHHHHHHHHHHHHHccccHcHHHHccccccc
Coil and Loop (DISEMBL)
MEEEQEAlnidacegmdvvfencgsssrffspiVFLDAIWNMAFVVVSVIVLFStlkekpatplrvWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVnglspsqtSLSVVKRLGAMNTMISSIWWVIGFYWIVVGgqalvrdsprlYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATrqgasaddirnLPKYRYRLASHLrasnnsekqdvfgtetemsnsnstdelalhpedsdcciclsqyvdgaelytlpcnhhfhcgciskwlrinatcplckynirrgdtlv
Flexible Loop (DISEMBL)
MEEEQEAlnidacegMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVvnglspsqTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRqgasaddirnlPKYRYRLAshlrasnnsekqdVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCplckynirrgdtlv
Low Complexity Region (SEG)
MEEEQEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVcifffaifccipiVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV
Disordered region (IsUnstruct)
********NIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLA************************************SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR******
Disordered Region (DISOPRED)
***************************RFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYR*************************VKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATR*****************************************************EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR******
Disordered Region (DISEMBL)
MEEEQEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDV***************LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV
Disordered Region (DISPRO)
****QEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNY****************TSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLA***************GTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEEQEALNIDACEGMDVVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.874	0.679	0.463	4e-65
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.891	0.752	0.432	6e-64
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.904	0.671	0.438	2e-62
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.887	0.706	0.458	6e-55
Q5SSZ7	913	E3 ubiquitin-protein liga	yes	no	0.155	0.051	0.531	4e-11
Q9M2S6	273	E3 ubiquitin-protein liga	no	no	0.310	0.344	0.339	4e-11
Q4KLR8	784	E3 ubiquitin-protein liga	N/A	no	0.155	0.059	0.553	2e-10
Q9ULT6	936	E3 ubiquitin-protein liga	yes	no	0.148	0.048	0.511	6e-10
Q9WTV7	600	E3 ubiquitin-protein liga	no	no	0.138	0.07	0.452	2e-09
Q7T037	757	E3 ubiquitin-protein liga	N/A	no	0.138	0.055	0.452	2e-09

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  248 bits (633), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 132/285 (46%), Positives = 180/285 (63%), Gaps = 20/285 (7%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           +  P+VFLD +WN+AFV + V VL  +  EKP  PLRVWV GY +QC+LH+  V  EYRR
Sbjct: 105 YSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRR 164

Query: 89  KNYCGHRVALVVNGLSPSQTSLSV--------------VKRLGAMNTMISSIWWVIGFYW 134
           +    H      +GL+ S +   V               K L + NTM S IWW+IGFYW
Sbjct: 165 RRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYW 224

Query: 135 IVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP-IVALVYAVAT 193
           +  GGQ L  DSP+LYW+ ++FL FDV FV+FC+ + C+   A+ CC+P I+A++YAVA 
Sbjct: 225 VSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD 284

Query: 194 RQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCC 253
           ++GAS +DI  +PK+R+    ++   +   +    G  TE   ++S  E +L PED++CC
Sbjct: 285 QEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTE-CGTDSPIERSLSPEDAECC 339

Query: 254 ICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298
           ICL +Y DG EL  LPCNHHFHC CI KWL IN+ CPLCK+NI +
Sbjct: 340 ICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILK 384

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  244 bits (623), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 124/287 (43%), Positives = 173/287 (60%), Gaps = 17/287 (5%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           +  P+V  D +WN A V+ S ++L  T++E+P  P+RVW+  Y LQC  HV  V+ EY R
Sbjct: 73  YSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR 132

Query: 89  KNYCGHRVAL-------------VVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWI 135
           +N       L                    + T+ S VKR  ++NT+IS IWW+IGFYW+
Sbjct: 133 RNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWV 192

Query: 136 VVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP-IVALVYAVATR 194
           V GG  L+ ++P LYW++V+FLA DV F +FC+ + C+   A+ CC+P I+AL+YAVA  
Sbjct: 193 VEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGT 252

Query: 195 QGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCI 254
           +G S  ++  LP Y+++ A H    N +    +      ++      E  L  ED+DCCI
Sbjct: 253 EGVSEAELGVLPLYKFK-AFHSNEKNITGPGKM--VPIPINGLCLATERTLLAEDADCCI 309

Query: 255 CLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
           CLS Y DGAEL+ LPCNHHFH  CI KWL++ ATCPLCKYNI +G T
Sbjct: 310 CLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 135/308 (43%), Positives = 175/308 (56%), Gaps = 34/308 (11%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYR- 87
           +  P+V LD +WN+AFV V+  +L  + KE P  PLRVW+ GYALQC LH+  V  EYR 
Sbjct: 96  YSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRR 155

Query: 88  -----------------------------RKNYCGHRVALVVNGLSPSQ---TSLSVVKR 115
                                         +   G R    V  LS       S SV K 
Sbjct: 156 RNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKH 215

Query: 116 LGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFF 175
           L + NTM S IWW+IGFYW+  GGQ L ++SPR+YW+++VFL FDV FV+FC+ + C+  
Sbjct: 216 LESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIG 275

Query: 176 FAIFCCIP-IVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEM 234
            A+ CC+P I+A++YAVA ++GAS +DI  L K+++R         N E Q         
Sbjct: 276 IAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTE 335

Query: 235 SNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294
             ++S  E  L  ED++CCICLS Y DG EL  LPC HHFHC C+ KWL INATCPLCKY
Sbjct: 336 CGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKY 395

Query: 295 NIRRGDTL 302
           NI +   L
Sbjct: 396 NILKSSNL 403

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  214 bits (545), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 178/303 (58%), Gaps = 34/303 (11%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           +  P+V LD +WN+AFVVV+  VL  +  E P  PLRVW+ GY LQC +H+  V  EYRR
Sbjct: 70  YSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRR 129

Query: 89  KNYCGHRVALVV---------------NGLSPSQTSL--------------SVVKRLGAM 119
           +N    R                     GL  S+ S               S  K L + 
Sbjct: 130 RNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDERYLELGQLENENNSFAKHLESA 189

Query: 120 NTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIF 179
           NTMIS IWWVIGFYW+  GGQ L + SP+LYW+ +VFL FDV FV+FC+ + C+   A+ 
Sbjct: 190 NTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVC 249

Query: 180 CCIP-IVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQ---DVFGTETEMS 235
           CC+P I+A++YAVA ++GAS +DI  L K+++R           E+Q   D  G  TE  
Sbjct: 250 CCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTE-C 308

Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
            ++S  E AL  ED++CCICLS Y D  EL  LPC HHFHCGC+ KWL INATCPLCKYN
Sbjct: 309 GTDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYN 368

Query: 296 IRR 298
           I +
Sbjct: 369 ILK 371

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           SDC ICL +Y+DG EL  +PC H FH  C+  WL  + TCP C++NI
Sbjct: 288 SDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 334

Mus musculus (taxid: 10090)

>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 198 SADDIRNLPKYRYRLAS-------HLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDS 250
           S ++I  LP ++Y++           +AS +S  + +  +  E S   + DEL       
Sbjct: 158 SEEEINALPVHKYKVLDPENGCSLAKQASTSSSAEKMLDSANE-SKKGTEDELT------ 210

Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG 299
            C +CL Q   G  + TLPC H FH GCI  WLR   TCP+CK+    G
Sbjct: 211 -CSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFRAHSG 258

E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 32/47 (68%)

Query: 250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           SDC ICL +Y+DG EL  +PC H FH  C+  WL  N TCP C++NI
Sbjct: 200 SDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCPHCRHNI 246

E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination and subsequent degradation of Wnt receptor complex components.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1 SV=3

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           C ICL +Y+DG EL  +PC H FH  C+  WL  + TCP C++NI
Sbjct: 293 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCRHNI 337

Homo sapiens (taxid: 9606)

>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           C +C+++Y +G +L  LPC+H +H  CI +WL  N+TCP+C+
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587

E3 ubiquitin-protein ligase. Acts as a negative coregulator for LIM homeodomain transcription factors by mediating the ubiquitination and subsequent degradation of LIM cofactors LDB1 and LDB2 and by mediating the recruitment the SIN3a/histone deacetylase corepressor complex. Ubiquitination and degradation of LIM cofactors LDB1 and LDB2 allows DNA-bound LIM homeodomain transcription factors to interact with other protein partners such as RLIM. Plays a role in telomere length-mediated growth suppression by mediating the ubiquitination and degradation of TERF1. Acts as an activator of random inactivation of X chromosome in the embryo, a stochastic process in which one X chromosome is inactivated to minimize sex-related dosage differences of X-encoded genes in somatic cells of female placental mammals.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           C +C+++Y +G +L  LPC+H +H  CI +WL  N+TCP+C+
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
225440256	331	PREDICTED: E3 ubiquitin-protein ligase A	0.861	0.788	0.629	8e-99
449437970	336	PREDICTED: E3 ubiquitin protein ligase R	0.897	0.809	0.624	2e-98
449516611	264	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.867	0.996	0.639	2e-97
356570399	327	PREDICTED: E3 ubiquitin protein ligase R	0.854	0.792	0.590	2e-91
297741734	241	unnamed protein product [Vitis vinifera]	0.795	1.0	0.623	7e-91
356504625	325	PREDICTED: E3 ubiquitin protein ligase R	0.854	0.796	0.571	5e-88
357509161	297	E3 ubiquitin-protein ligase [Medicago tr	0.854	0.872	0.579	1e-85
148908123	373	unknown [Picea sitchensis]	0.891	0.723	0.488	7e-81
148910158	373	unknown [Picea sitchensis]	0.891	0.723	0.484	1e-80
449453127	347	PREDICTED: E3 ubiquitin protein ligase R	0.927	0.809	0.541	2e-80

>gi|225440256|ref|XP_002283980.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Vitis vinifera]

 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 173/275 (62%), Positives = 212/275 (77%), Gaps = 14/275 (5%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           F  PIV LD IWN+AFV VS++VL ST +E+P+ PLRVW+ GYALQC LHVGFV F++RR
Sbjct: 71  FSKPIVVLDVIWNLAFVSVSMVVLLSTFQERPSRPLRVWIFGYALQCLLHVGFVCFQFRR 130

Query: 89  KNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPR 148
           +N    R +             S+VKRL +MNTM SS+WWV GF WI+ GGQ L++DSPR
Sbjct: 131 RNGNEDRHS-------------SIVKRLESMNTMFSSVWWVFGFCWILAGGQVLMQDSPR 177

Query: 149 LYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKY 208
           LYW+ VVFLAFDV F++FCIGM CIFFFA+FCCIP+ A+ YA+  R+GAS DDIR LP+Y
Sbjct: 178 LYWLAVVFLAFDVFFMMFCIGMACIFFFALFCCIPLAAIAYAMKIREGASEDDIRLLPRY 237

Query: 209 RYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTL 268
           R+  AS +R  ++ +KQ       E+ +S+S  +LALHPEDS+CCICLS+YVDGAELY L
Sbjct: 238 RFCDASLVRKVDDDKKQ-ALEAAVELGSSSSISDLALHPEDSECCICLSRYVDGAELYIL 296

Query: 269 PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           PCNHHFHCGCIS+WLRINATCPLCK+NI RGD LV
Sbjct: 297 PCNHHFHCGCISRWLRINATCPLCKFNILRGDMLV 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437970|ref|XP_004136763.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 178/285 (62%), Positives = 222/285 (77%), Gaps = 13/285 (4%)

Query: 19  VFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLH 78
           + ENC  S     PI+ LD +WN+AFV+VSV+VLFST +E+P+TPLR+W+SGY LQC LH
Sbjct: 65  IRENCSYSM----PILVLDVVWNLAFVLVSVVVLFSTFRERPSTPLRLWISGYGLQCLLH 120

Query: 79  VGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVG 138
           VGFVFFEY+R        ++  +G        S++KRL +MNTM SS+WWV GFYWIV+G
Sbjct: 121 VGFVFFEYQR--------SMAHHGFEDRTAHRSIMKRLESMNTMTSSVWWVFGFYWIVMG 172

Query: 139 GQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGAS 198
           GQAL++DSPRLYW+TVVFLAFD+ F++FCIGM C+ FF++ CCIPIVA  YA+ TR+GAS
Sbjct: 173 GQALLQDSPRLYWLTVVFLAFDLFFILFCIGMACVIFFSLCCCIPIVAFAYAMTTREGAS 232

Query: 199 ADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQ 258
            +DIR LPKY +R A  L   N  ++++  G+  E+ NS+   ELALHPEDS+CCICLS+
Sbjct: 233 EEDIRTLPKYTFRQAV-LGTFNLGKEREPIGSTVELDNSHRIKELALHPEDSECCICLSR 291

Query: 259 YVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           Y DG ELYTLPCNHHFHCGCI+KWLRINATCPLCK NIR+GDTLV
Sbjct: 292 YEDGTELYTLPCNHHFHCGCIAKWLRINATCPLCKSNIRQGDTLV 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516611|ref|XP_004165340.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 174/272 (63%), Positives = 217/272 (79%), Gaps = 9/272 (3%)

Query: 32  PIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNY 91
           PI+ LD +WN+AFV+VSV+VLFST +E+P+TPLR+W+SGY LQC LHVGFVFFEY+R   
Sbjct: 2   PILVLDVVWNLAFVLVSVVVLFSTFRERPSTPLRLWISGYGLQCLLHVGFVFFEYQR--- 58

Query: 92  CGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYW 151
                ++  +G        S++KRL +MNTM SS+WWV GFYWIV+GGQAL++DSPRLYW
Sbjct: 59  -----SMAHHGFEDRTAHRSIMKRLESMNTMTSSVWWVFGFYWIVMGGQALLQDSPRLYW 113

Query: 152 VTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYR 211
           +TVVFLAFD+ F++FCIGM C+ FF++ CCIPIVA  YA+ TR+GAS +DIR LPKY +R
Sbjct: 114 LTVVFLAFDLFFILFCIGMACVXFFSLCCCIPIVAFAYAMTTREGASEEDIRTLPKYTFR 173

Query: 212 LASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCN 271
            A  L   N  ++++  G+  E+ NS+   ELALHPEDS+CCICLS+Y DG ELYTLPCN
Sbjct: 174 QAV-LGTFNLGKEREPIGSTVELDNSHRIKELALHPEDSECCICLSRYEDGTELYTLPCN 232

Query: 272 HHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           HHFHCGCI+KWLRINATCPLCK NIR+GDTLV
Sbjct: 233 HHFHCGCIAKWLRINATCPLCKSNIRQGDTLV 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570399|ref|XP_003553376.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/271 (59%), Positives = 203/271 (74%), Gaps = 12/271 (4%)

Query: 33  IVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYC 92
           ++ LD +WN+AFVV +  VL STL+E+PATPLR+W+ GYA +C LH+ FV+FE+R +   
Sbjct: 69  VLVLDMVWNLAFVVAAAGVLLSTLRERPATPLRLWLCGYAFECVLHMAFVYFEFRTRI-- 126

Query: 93  GHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWV 152
                      S S T+ S+VK+L  MNT+ SS+WWV GFYWIVVGGQAL+ DSP LYW+
Sbjct: 127 ---------RDSFSHTTYSIVKKLEPMNTLASSVWWVFGFYWIVVGGQALLEDSPHLYWL 177

Query: 153 TVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRL 212
           TVVFLAFDV F+IFCIGM CI FFA+FC IPI+AL YA+  R+GAS +DIR+LP YR+ L
Sbjct: 178 TVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDIRSLPMYRFSL 237

Query: 213 ASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNH 272
           ++ L   ++++KQ V     +  N +   EL+LHP+DS+CCICL  YV+G ELY LPC H
Sbjct: 238 SNSLVMVDDNKKQLV-KVRVDSCNGSHMSELSLHPDDSECCICLCPYVEGEELYRLPCTH 296

Query: 273 HFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           HFHCGCIS+WLR  ATCPLCK+NI RGDTLV
Sbjct: 297 HFHCGCISRWLRTKATCPLCKFNILRGDTLV 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741734|emb|CBI32866.3| unnamed protein product [Vitis vinifera]

 Score =  339 bits (870), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/255 (62%), Positives = 197/255 (77%), Gaps = 14/255 (5%)

Query: 49  VIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQT 108
           ++VL ST +E+P+ PLRVW+ GYALQC LHVGFV F++RR+N    R +           
Sbjct: 1   MVVLLSTFQERPSRPLRVWIFGYALQCLLHVGFVCFQFRRRNGNEDRHS----------- 49

Query: 109 SLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCI 168
             S+VKRL +MNTM SS+WWV GF WI+ GGQ L++DSPRLYW+ VVFLAFDV F++FCI
Sbjct: 50  --SIVKRLESMNTMFSSVWWVFGFCWILAGGQVLMQDSPRLYWLAVVFLAFDVFFMMFCI 107

Query: 169 GMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVF 228
           GM CIFFFA+FCCIP+ A+ YA+  R+GAS DDIR LP+YR+  AS +R  ++ +KQ   
Sbjct: 108 GMACIFFFALFCCIPLAAIAYAMKIREGASEDDIRLLPRYRFCDASLVRKVDDDKKQ-AL 166

Query: 229 GTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINAT 288
               E+ +S+S  +LALHPEDS+CCICLS+YVDGAELY LPCNHHFHCGCIS+WLRINAT
Sbjct: 167 EAAVELGSSSSISDLALHPEDSECCICLSRYVDGAELYILPCNHHFHCGCISRWLRINAT 226

Query: 289 CPLCKYNIRRGDTLV 303
           CPLCK+NI RGD LV
Sbjct: 227 CPLCKFNILRGDMLV 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504625|ref|XP_003521096.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Glycine max]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 155/271 (57%), Positives = 202/271 (74%), Gaps = 12/271 (4%)

Query: 33  IVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYC 92
           ++ LD +WN+AFVVV+  VL STL+E+P+TPLR+W+ GYA +C LH+ FV+FE+R     
Sbjct: 67  VLVLDMVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVYFEFRT---- 122

Query: 93  GHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWV 152
           G R +        S T+ S+VK+L  MNT+ SS+WW+ GFYWIVVG QAL+ DSPRLYW+
Sbjct: 123 GIRDSF-------SHTAYSIVKKLEPMNTLASSVWWIFGFYWIVVGDQALLEDSPRLYWL 175

Query: 153 TVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRL 212
           TVVFLAFDV F+IFCIGM CI FFA+FC IPI+AL YA+  R+GAS +DI +LP YR+  
Sbjct: 176 TVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYAMRIREGASEEDILSLPMYRFSQ 235

Query: 213 ASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNH 272
           ++ L   ++++KQ + G   +  N +    L+LHP+DS+CCICL  YV+GAELY LPC H
Sbjct: 236 SNSLVMVDDNKKQLIKG-RVDSCNGSHMSALSLHPDDSECCICLCPYVEGAELYRLPCTH 294

Query: 273 HFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           HFHC CI +WL+  ATCPLCK+NI RGDTLV
Sbjct: 295 HFHCECIGRWLQTKATCPLCKFNILRGDTLV 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509161|ref|XP_003624869.1| E3 ubiquitin-protein ligase [Medicago truncatula] gi|355499884|gb|AES81087.1| E3 ubiquitin-protein ligase [Medicago truncatula]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/271 (57%), Positives = 196/271 (72%), Gaps = 12/271 (4%)

Query: 33  IVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRRKNYC 92
           ++ +D +WN+AFVVV+  V+ ST  E+P+TPLR+W+ GYA +C LHV FVF E+R     
Sbjct: 39  VLVVDMVWNLAFVVVAAAVILSTFNERPSTPLRLWLCGYAFECLLHVAFVFSEFR----- 93

Query: 93  GHRVALVVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWV 152
                 V    S S T  S+ K+L  MNT+ SS+WWV GFYWIVVGGQ L+ DSPRLYW+
Sbjct: 94  ------VTTRDSFSHTPYSIAKKLEPMNTLASSVWWVFGFYWIVVGGQPLLEDSPRLYWL 147

Query: 153 TVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVATRQGASADDIRNLPKYRYRL 212
           TVVFLAFDV F+IFCIGM CI FFA+FC IPI+AL YA+  R+GAS DDI +LP YR+  
Sbjct: 148 TVVFLAFDVFFIIFCIGMACIVFFALFCIIPIIALAYALRIREGASEDDISSLPMYRFSQ 207

Query: 213 ASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNH 272
           ++ +   ++++KQ V   +    N +   EL+LHP+DS+CCICL  YVDG ELY LPC H
Sbjct: 208 SNVMVMVDDNKKQHV-KAKIGSYNPSHISELSLHPDDSECCICLCPYVDGTELYRLPCTH 266

Query: 273 HFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           HFHC CIS+WLR  ATCPLCKYNIRR DTLV
Sbjct: 267 HFHCACISRWLRTKATCPLCKYNIRRADTLV 297

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148908123|gb|ABR17177.1| unknown [Picea sitchensis]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 146/299 (48%), Positives = 194/299 (64%), Gaps = 29/299 (9%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           +  P+V LD +WN++FVVVSV++L STL+E+P TPLRVW++GYALQC LH+ +V +EY R
Sbjct: 70  YSKPVVMLDLLWNLSFVVVSVVILTSTLEERPTTPLRVWIAGYALQCLLHMIYVAYEYTR 129

Query: 89  KN-------------------------YCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMI 123
           +N                           G        G   ++   S+ KRL ++NTM 
Sbjct: 130 RNRQRSPSVGSAGGSESASSAGEQVNSQVGRAPQEAETGRQETEERSSIAKRLESVNTMF 189

Query: 124 SSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP 183
           S  WW++GFYW++ GG++L  D+PRLYW+ +VFLAFDV FV FC  + C+   A+ CC+P
Sbjct: 190 SFFWWIVGFYWLLAGGKSLAEDAPRLYWLCIVFLAFDVFFVAFCAAVACMIGIAVCCCLP 249

Query: 184 -IVALVYAVATRQGASADDIRNLPKYRY-RLASHLRASNNSEKQDVFGTETEMSNSNSTD 241
            I+A++YAVA + GAS  +I  LPKYR+ R+    +  NNSEK   +G    +    ST 
Sbjct: 250 CIIAILYAVANQDGASETEINLLPKYRFCRIGPSEK--NNSEKSPSYGGVMTLICGESTS 307

Query: 242 ELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
           E  L  ED++CCICLS Y DG ELY LPCNHHFHCGCI+KWLRINATCPLCKYN+ + D
Sbjct: 308 ERVLGAEDAECCICLSAYEDGVELYELPCNHHFHCGCIAKWLRINATCPLCKYNVVKND 366

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148910158|gb|ABR18161.1| unknown [Picea sitchensis]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 194/299 (64%), Gaps = 29/299 (9%)

Query: 29  FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
           +  P+V LD +WN++FVVVSV++L STL+E+P TP+RVW++GYALQC LH+ +V +EY R
Sbjct: 70  YSKPVVMLDLLWNLSFVVVSVVILTSTLEERPTTPMRVWIAGYALQCLLHMIYVAYEYTR 129

Query: 89  KN-------------------------YCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMI 123
           +N                           G        G   ++   S+ KRL ++NTM 
Sbjct: 130 RNRQRSPSVGSAGGSESASSAGEQVNSQVGRAPQEAETGRQETEERSSIAKRLESVNTMF 189

Query: 124 SSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIP 183
           S  WW++GFYW++ GG++L  D+PRLYW+ +VFLAFDV FV FC  + C+   A+ CC+P
Sbjct: 190 SFFWWIVGFYWLLAGGKSLAEDAPRLYWLCIVFLAFDVFFVAFCAAVACMIGIAVCCCLP 249

Query: 184 -IVALVYAVATRQGASADDIRNLPKYRY-RLASHLRASNNSEKQDVFGTETEMSNSNSTD 241
            I+A++YAVA + GAS  +I  LPKYR+ R+    +  NNSEK   +G    +    ST 
Sbjct: 250 CIIAILYAVANQDGASETEINLLPKYRFCRIGPSEK--NNSEKSPSYGGVMTLICGESTS 307

Query: 242 ELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
           E  L  ED++CCICLS Y DG ELY LPCNHHFHCGCI+KWLRINATCPLCKYN+ + D
Sbjct: 308 ERVLGAEDAECCICLSAYEDGVELYELPCNHHFHCGCIAKWLRINATCPLCKYNVVKND 366

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453127|ref|XP_004144310.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus] gi|449488257|ref|XP_004157983.1| PREDICTED: E3 ubiquitin protein ligase RIE1-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/290 (54%), Positives = 198/290 (68%), Gaps = 9/290 (3%)

Query: 18  VVFENCGSSSRFFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFL 77
           V+F N GSS  F  PI+ LD  WN+ FV +SVIVL  + +EKP  PLR W+SGYA+QC  
Sbjct: 63  VLFRN-GSS--FIKPILVLDLFWNLFFVFLSVIVLVLSAEEKPTAPLRFWLSGYAVQCLF 119

Query: 78  HVGFVFFEYRRKNYCGHRVALVVNG----LSPSQTSLSVVKRLGAMNTMISSIWWVIGFY 133
           HV FVF  Y R++   +R+     G    L  S   + V+KRL A+NTM++ IWWV GFY
Sbjct: 120 HVFFVFVAYLRRS-SRYRLGFENRGAQDELRLSHNRIRVMKRLEALNTMVAYIWWVFGFY 178

Query: 134 WIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVCIFFFAIFCCIPIVALVYAVAT 193
           WIV+GGQAL+  SPRLYW+ VVFLAFDV F+IFC GM  + FFA+ C IP +A  Y +  
Sbjct: 179 WIVMGGQALLEGSPRLYWLAVVFLAFDVFFIIFCTGMAFVGFFAVCCIIPFLAYGYTMNF 238

Query: 194 RQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCC 253
            +GAS D+IR LPKYR+   + L + +N +KQ+V G   E   +  T E  L+ EDS CC
Sbjct: 239 LEGASEDEIRALPKYRFHQDNPLESFDNDKKQEV-GMTLEPGYNGHTTEHTLNAEDSACC 297

Query: 254 ICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           ICL+QYV G +L  LPCNHHFH  CI KWLRINATCPLCK++I +GD+LV
Sbjct: 298 ICLAQYVHGVQLCMLPCNHHFHTRCIVKWLRINATCPLCKFSIGQGDSLV 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.636	0.473	0.489	8.7e-67
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.610	0.485	0.505	2.3e-64
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.874	0.772	0.454	4.7e-64
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.867	0.674	0.452	2e-63
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.660	0.527	0.399	7.8e-58
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.891	0.752	0.411	1.2e-56
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.518	0.385	0.35	6.5e-29
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.534	0.357	0.314	1.9e-28
TAIR|locus:2161740	343	AT5G55970 [Arabidopsis thalian	0.848	0.749	0.252	3.9e-21
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.194	0.176	0.423	1.4e-20

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 96/196 (48%), Positives = 123/196 (62%)

Query:   109 SLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCI 168
             S SV K L + NTM S IWW+IGFYW+  GGQ L ++SPR+YW+++VFL FDV FV+FC+
Sbjct:   209 SSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCV 268

Query:   169 GMVXXXXXXXXXXXX-XVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDV 227
              +               +A++YAVA ++GAS +DI  L K+++R         N E Q  
Sbjct:   269 ALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGT 328

Query:   228 F-GTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN 286
               G  TE   ++S  E  L  ED++CCICLS Y DG EL  LPC HHFHC C+ KWL IN
Sbjct:   329 TEGIMTECG-TDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYIN 387

Query:   287 ATCPLCKYNIRRGDTL 302
             ATCPLCKYNI +   L
Sbjct:   388 ATCPLCKYNILKSSNL 403

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
 Identities = 96/190 (50%), Positives = 120/190 (63%)

Query:   111 SVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGM 170
             S  K L + NTMIS IWWVIGFYW+  GGQ L + SP+LYW+ +VFL FDV FV+FC+ +
Sbjct:   181 SFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVAL 240

Query:   171 VXXXXXXXXXXXX-XVALVYAVATRQGASADDIRNLPKYRYRLASHLRASNNSEKQ---D 226
                            +A++YAVA ++GAS +DI  L K+++R           E+Q   D
Sbjct:   241 ACVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGD 300

Query:   227 VFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN 286
               G  TE   ++S  E AL  ED++CCICLS Y D  EL  LPC HHFHCGC+ KWL IN
Sbjct:   301 SGGVMTECG-TDSPVEHALPHEDAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYIN 359

Query:   287 ATCPLCKYNI 296
             ATCPLCKYNI
Sbjct:   360 ATCPLCKYNI 369

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 129/284 (45%), Positives = 180/284 (63%)

Query:    29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
             +  P+V LD +WN AFV+V++++L    +EKP  P+R+W+ GYA+QC +HV  V+ E+R+
Sbjct:    64 YSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEFRK 123

Query:    89 KNYCGH----RVALVVNGLSPSQTS----LSVVKRLGAMNTMISSIWWVIGFYWIVVGGQ 140
             +N          A   N  S  + +    LS  K   +MNT+IS +WW++GFYW+V GG 
Sbjct:   124 RNARSRPGDLEAAQATNQDSEDEDNDERFLST-KTCESMNTIISFVWWIVGFYWLVSGGD 182

Query:   141 ALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXX-XVALVYAVATRQGASA 199
              L++++  LYW+T VFLAFDV F IFC+ +               +AL+YAVA ++GAS 
Sbjct:   183 ILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASE 242

Query:   200 DDIRNLPKYRYRLASHLRASNNSEKQDVFGTE---TEMSNSNSTDELALHPEDSDCCICL 256
              D+  LPKYR+    H    NN EKQ   G +    + ++ N  +E  L PED+DCCICL
Sbjct:   243 ADLSILPKYRF----H--TMNNDEKQSDGGGKMIPVDAASENLGNERVLLPEDADCCICL 296

Query:   257 SQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
             S Y DGAEL +LPCNHHFH  CI KWL++NATCPLCK+NI +G+
Sbjct:   297 SSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNILKGN 340

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 128/283 (45%), Positives = 172/283 (60%)

Query:    29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
             +  P+VFLD +WN+AFV + V VL  +  EKP  PLRVWV GY +QC+LH+  V  EYRR
Sbjct:   105 YSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRR 164

Query:    89 KNYCGHRVALVVNGL--SPSQTSLSVV------------KRLGAMNTMISSIWWVIGFYW 134
             +    H      +GL  S SQ  +S+             K L + NTM S IWW+IGFYW
Sbjct:   165 RRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWWIIGFYW 224

Query:   135 IVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXX-XVALVYAVAT 193
             +  GGQ L  DSP+LYW+ ++FL FDV FV+FC+ +               +A++YAVA 
Sbjct:   225 VSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAILYAVAD 284

Query:   194 RQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCC 253
             ++GAS +DI  +PK+R+    ++   +   +    G  TE   ++S  E +L PED++CC
Sbjct:   285 QEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECG-TDSPIERSLSPEDAECC 339

Query:   254 ICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
             ICL +Y DG EL  LPCNHHFHC CI KWL IN+ CPLCK+NI
Sbjct:   340 ICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 81/203 (39%), Positives = 117/203 (57%)

Query:   100 VNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAF 159
             +N         S  K L + NTM S +WW+IGFYW+    +AL + SP+LYW+ V FLAF
Sbjct:   171 INNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAF 230

Query:   160 DVSFVIFCIGMVXXXXXXXXXXXX-XVALVYAVATRQGASADDIRNLPKYRYRLASHLRA 218
             DV FV+ C+ +               +A++YA+A ++GA  ++I  L K+++    +   
Sbjct:   231 DVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEK 290

Query:   219 SNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGC 278
              N   ++   G  T +   + T+ + L  ED++C ICL  Y DG EL  LPC HHFH  C
Sbjct:   291 VNGEIRETQGGIMTGLDTESQTERMLLS-EDAECSICLCAYEDGVELRELPCRHHFHSLC 349

Query:   279 ISKWLRINATCPLCKYNI-RRGD 300
             + KWLRINATCPLCK+NI + G+
Sbjct:   350 VDKWLRINATCPLCKFNILKNGE 372

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 118/287 (41%), Positives = 164/287 (57%)

Query:    29 FFSPIVFLDAIWNMAFVVVSVIVLFSTLKEKPATPLRVWVSGYALQCFLHVGFVFFEYRR 88
             +  P+V  D +WN A V+ S ++L  T++E+P  P+RVW+  Y LQC  HV  V+ EY R
Sbjct:    73 YSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWR 132

Query:    89 KNYCGHRVAL-------------VVNGLSPSQTSLSVVKRLGAMNTMISSIWWVIGFYWI 135
             +N       L                    + T+ S VKR  ++NT+IS IWW+IGFYW+
Sbjct:   133 RNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWV 192

Query:   136 VVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXX-XVALVYAVATR 194
             V GG  L+ ++P LYW++V+FLA DV F +FC+ +               +AL+YAVA  
Sbjct:   193 VEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAVAGT 252

Query:   195 QGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCI 254
             +G S  ++  LP Y+++ A H    N +    +      ++      E  L  ED+DCCI
Sbjct:   253 EGVSEAELGVLPLYKFK-AFHSNEKNITGPGKM--VPIPINGLCLATERTLLAEDADCCI 309

Query:   255 CLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
             CLS Y DGAEL+ LPCNHHFH  CI KWL++ ATCPLCKYNI +G T
Sbjct:   310 CLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNILKGTT 356

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 6.5e-29, Sum P(2) = 6.5e-29
 Identities = 63/180 (35%), Positives = 90/180 (50%)

Query:   125 SIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXXX 184
             ++W+V+G  WI  GG +   DSP+LY + + FL F       CIG               
Sbjct:   235 AVWFVVGNVWIF-GGHSSPSDSPKLYRLCIAFLTFS------CIGYAMPFILCATICCCL 287

Query:   185 VALVYAVATRQ------GASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETE--MSN 236
               L+  +  R+      GA+A+ I  LP YR++  S     N+ E    F  E E     
Sbjct:   288 PCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSR----NDLE----FSEEGEGGFLL 339

Query:   237 SNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
               S  +  +  ED+ CCICL++Y D  ++  LPC+H FH  C+ KWL+INATCPLCK  +
Sbjct:   340 LGSQKKRLISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCKNEV 399

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
 Identities = 56/178 (31%), Positives = 94/178 (52%)

Query:   125 SIWWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXXX 184
             ++W+V+G  WI  GG +   ++P LY + +VFL F       CIG               
Sbjct:   240 AVWFVVGNVWIF-GGHSSAAEAPNLYRLCLVFLTFS------CIGYAMPFILCTTICCCL 292

Query:   185 VALVYAVATRQ------GASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSN 238
               ++  +  R+      GA+ + I  LP ++++L    ++ +N +      +E  +  + 
Sbjct:   293 PCIISILGYREDLTQPRGATPESINALPTHKFKLK---KSRSNGDDNGSSTSEGGVVAAG 349

Query:   239 STDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
             + +E A+  ED+ CCICL++Y +  EL  LPC+H FH  C+ KWL+INA+CPLCK  +
Sbjct:   350 TDNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEV 407

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2161740 AT5G55970 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 74/293 (25%), Positives = 133/293 (45%)

Query:    20 FENCGSSSRFFSPIVFLDAIWNMAFVV---VSVIVLFSTL----KEKPATPLRVWVSGYA 72
             ++N   S    +P  F  + W M+ ++   V + V+  TL    +E+P  P+R+W++GY 
Sbjct:    73 YQNGSRSDLGSNP--FNSSTWMMSELIALLVQLTVITFTLAISKEERPIWPVRLWITGYD 130

Query:    73 LQCFLHVGFVFFEYRRKNYCGHRVALVVNGLSPSQTSLSVVKRLGAMNTMISS------I 126
             + C L++  ++  YR+ +        V+  +   Q      +    MN   +S      I
Sbjct:   131 VGCLLNLMLLYGRYRQLDI-NQGNGFVLGDVEQQQRGREETRSSHLMNKCRTSLELFFAI 189

Query:   127 WWVIGFYWIVVGGQALVRDSPRLYWVTVVFLAFDVSFVIFCIGMVXXXXXXXXXXXXXVA 186
             W+VIG  W+          +P+L+ + V  LA++     F   +              + 
Sbjct:   190 WFVIGNVWVFDSRFGSFHHAPKLHVLCVSLLAWNAICYSFPFLLFLFLCCLVPLISSLLG 249

Query:   187 LVYAVATRQGASADD-IRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELAL 245
                 + +   A++DD I +LP ++++                     + S S+S  + A 
Sbjct:   250 YNMNMGSSDRAASDDQISSLPSWKFK-------------------RIDDSASDSDSDSAT 290

Query:   246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298
               +D +CCICL++Y D  E+  LPC+H FH  C+ +WLRI + CPLCK ++ R
Sbjct:   291 VTDDPECCICLAKYKDKEEVRKLPCSHKFHSKCVDQWLRIISCCPLCKQDLPR 343

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 25/59 (42%), Positives = 39/59 (66%)

Query:   238 NSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
             + T + +    D +CCICL++Y +  E+  LPC+H FH  C+ +WLRI + CPLCK ++
Sbjct:   275 DETSDSSQANNDPECCICLAKYKEKEEVRKLPCSHRFHLKCVDQWLRIISCCPLCKQDL 333

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023357001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (418 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	6e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-09
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-09
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	8e-08
smart00184	40	smart00184, RING, Ring finger	5e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	9e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	9e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	0.001

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 67.4 bits (165), Expect = 6e-15
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           +C ICL ++  G E+  LPC H FH  C+ KWLR + TCPLC+
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 50.9 bits (122), Expect = 4e-09
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYNI 296
           +C ICL ++ +   L  LPC H F   CI KWL+    TCPLC+  I
Sbjct: 1   ECPICLEEFREPVVL--LPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 51.7 bits (124), Expect = 6e-09
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 248 EDSDCCICLSQYVDGAELYTLP----------CNHHFHCGCISKWLRINATCPLCK 293
           ED  C IC + +         P          C H FH  CIS+WL+   TCPLC+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCK 293
           +C IC+S ++    L  LPC+H FH GC+ KWL   +  CP+C+
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 47.5 bits (113), Expect = 8e-08
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294
           E+ +C ICL    D   +   PC H F   CI ++L+  + CP+C+ 
Sbjct: 1   EELECPICLDLLRD--PVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 45.2 bits (107), Expect = 5e-07
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLC 292
           C ICL +Y+   +   LPC H F   CI KWL   N TCP+C
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLC 292
           C ICL +  D   +  LPC H F   CI  WL     TCPLC
Sbjct: 1   CPICLEEPKD--PVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 21/92 (22%)

Query: 212 LASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYT---- 267
            A   RA+ +        TE +++NS+ T           C IC+ +             
Sbjct: 261 HARFRRATKDLNAMYPTATEEQLTNSDRT-----------CTICMDEMFHPDHEPLPRGL 309

Query: 268 ------LPCNHHFHCGCISKWLRINATCPLCK 293
                 LPC H  H  C+  WL    TCP+C+
Sbjct: 310 DMTPKRLPCGHILHLHCLKNWLERQQTCPICR 341

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 270 CNHHFHCGCISKWLRINATCPLCK 293
           CNH FH  CI +WL     CPL +
Sbjct: 54  CNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)

Query: 248 EDSDCCICLSQYVDGAELYT-----LP-CNHHFHCGCISKWLRINATCPLCK 293
           +D +C IC+ +  D  E+       L  CNH F   CI  W +   TCP+C+
Sbjct: 173 KDKECAICMEKVYD-KEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 224  KQDVFGTETEMSNSNS--TDELALHPEDSD--------CCICLSQYVDGAELYTLP---- 269
            K  +   + EM   N    D L L  ++ D        C IC S  V      +LP    
Sbjct: 1434 KSWINLRQNEMIKKNGSFMDLLGLWKKNIDEKFSGHEECAICYS--VLDMVDRSLPSKRC 1491

Query: 270  --CNHHFHCGCISKWLRI--NATCPLCKYNI 296
              C + FH  C+ KW      + CPLC+  I
Sbjct: 1492 ATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.76
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.59
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.39
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.38
PHA02929	238	N1R/p28-like protein; Provisional	99.35
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.34
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.23
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.14
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.09
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.05
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.04
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.04
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.96
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.95
PF14634	44	zf-RING_5: zinc-RING finger domain	98.87
PHA02926	242	zinc finger-like protein; Provisional	98.83
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.81
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.76
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.75
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.73
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.67
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.65
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.65
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.57
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.56
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.54
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.49
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.46
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.23
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.17
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.15
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.15
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.15
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.07
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.05
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.03
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.03
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.86
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.82
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.75
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.74
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.3
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.26
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.24
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.23
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.19
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.94
PHA02862	156	5L protein; Provisional	96.9
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.82
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.81
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.69
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.62
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.61
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.59
PHA02825	162	LAP/PHD finger-like protein; Provisional	96.58
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.85
COG5152	259	Uncharacterized conserved protein, contains RING a	95.79
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.79
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.79
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.76
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.76
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.66
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.63
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.29
PHA03096	284	p28-like protein; Provisional	95.12
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.02
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.97
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	94.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.93
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.79
KOG2660	331	consensus Locus-specific chromosome binding protei	94.76
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.86
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.59
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.19
KOG1940	276	consensus Zn-finger protein [General function pred	93.14
PF04641	260	Rtf2: Rtf2 RING-finger	93.03
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.01
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.8
KOG1609	323	consensus Protein involved in mRNA turnover and st	92.66
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	92.46
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.07
KOG3053	293	consensus Uncharacterized conserved protein [Funct	91.2
KOG1001	674	consensus Helicase-like transcription factor HLTF/	90.63
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	90.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.24
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	89.95
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.87
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	89.72
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.04
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.56
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	88.45
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	88.35
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	85.9
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.59
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.79
KOG0825	1134	consensus PHD Zn-finger protein [General function	83.9
KOG0298	1394	consensus DEAD box-containing helicase-like transc	82.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.7
KOG3002	299	consensus Zn finger protein [General function pred	82.66
KOG3899	381	consensus Uncharacterized conserved protein [Funct	82.07
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	81.25

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.5e-18  Score=160.42  Aligned_cols=78  Identities=35%  Similarity=0.831  Sum_probs=64.9

Q ss_pred             ccCCCCHHHHhcCCcceeccccccccCCCCccccccCCcccccCCCCcccccCCCCCCcceeecccccCCCceEEeCCCC
Q 022069          193 TRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNH  272 (303)
Q Consensus       193 ~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H  272 (303)
                      +.+++.++.++++|...|+     ...+++                         ....|+|||++|++||.+|.|||+|
T Consensus       203 ~~~r~~k~~l~~~p~~~f~-----~~~~~~-------------------------~~~~CaIClEdY~~GdklRiLPC~H  252 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFT-----KGDDED-------------------------ATDTCAICLEDYEKGDKLRILPCSH  252 (348)
T ss_pred             hhhhhHHHHHhhCCcEEec-----cccccC-------------------------CCceEEEeecccccCCeeeEecCCC
Confidence            5678899999999999999     111110                         1147999999999999999999999


Q ss_pred             ccChhhHHHHHhcCCC-CcccccCccCCC
Q 022069          273 HFHCGCISKWLRINAT-CPLCKYNIRRGD  300 (303)
Q Consensus       273 ~FH~~CI~~WL~~~~t-CPlCR~~I~~~~  300 (303)
                      .||..|||+||..+.+ ||+||+++.++.
T Consensus       253 ~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  253 KFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             chhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            9999999999988755 999999987654

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.59  E-value=2.9e-16  Score=103.97  Aligned_cols=44  Identities=45%  Similarity=1.238  Sum_probs=40.8

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK  293 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR  293 (303)
                      ++|+||++++++++.+..++|+|.||.+||.+|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999999999999999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.1e-13  Score=122.18  Aligned_cols=51  Identities=39%  Similarity=1.100  Sum_probs=47.4

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~  298 (303)
                      ..-+|+|||++|-.+|+++.|||+|.||..|+++|+. -+..||+||+++++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3478999999999999999999999999999999997 67899999999976

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.38  E-value=2.6e-13  Score=99.59  Aligned_cols=45  Identities=47%  Similarity=1.060  Sum_probs=36.9

Q ss_pred             CCcceeecccccCC----------CceEEeCCCCccChhhHHHHHhcCCCCcccc
Q 022069          249 DSDCCICLSQYVDG----------AELYTLPCNHHFHCGCISKWLRINATCPLCK  293 (303)
Q Consensus       249 d~~C~ICL~~y~~~----------~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR  293 (303)
                      +..|+||++++.+.          -.+...+|||.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            45599999999432          3456678999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.35  E-value=7.8e-13  Score=117.56  Aligned_cols=50  Identities=32%  Similarity=0.778  Sum_probs=41.7

Q ss_pred             CCCcceeecccccCCCc----eEE-eCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAE----LYT-LPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~----lr~-LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ++.+|+||++.+.+++.    +.. ++|+|.||.+||.+|++.+.+||+||.++.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            46789999999876531    234 469999999999999999999999999764

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.5e-12  Score=119.54  Aligned_cols=57  Identities=32%  Similarity=0.785  Sum_probs=47.9

Q ss_pred             cccCCCCCCcceeeccc-ccCCC---------ceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          242 ELALHPEDSDCCICLSQ-YVDGA---------ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       242 ~~~~~~ed~~C~ICL~~-y~~~~---------~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++++.+.|..|.||+++ ++.+.         ..+.|||||.||..|++.|++++++||+||.++..
T Consensus       280 ~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if  346 (491)
T COG5243         280 EEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF  346 (491)
T ss_pred             hhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence            34456788999999999 55542         34789999999999999999999999999999643

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=6.4e-12  Score=112.47  Aligned_cols=60  Identities=25%  Similarity=0.674  Sum_probs=51.7

Q ss_pred             cccccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069          240 TDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL  302 (303)
Q Consensus       240 ~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i  302 (303)
                      ..+......+..|.+||+.-++.   ..+||||+||..||..|...++.||+||....+.+.+
T Consensus       230 ~~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  230 NSLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI  289 (293)
T ss_pred             cCCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence            34445556678899999997776   8999999999999999999999999999999988765

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.14  E-value=3.7e-11  Score=102.84  Aligned_cols=53  Identities=36%  Similarity=0.739  Sum_probs=43.7

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc----------------CCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI----------------NATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~----------------~~tCPlCR~~I~~~~~  301 (303)
                      ..++.+|+||++.++++   ..++|||.||..||.+|+..                ..+||+||+++..++.
T Consensus        15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            34578899999998776   67899999999999999852                3579999999976543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=8.6e-11  Score=102.39  Aligned_cols=55  Identities=29%  Similarity=0.633  Sum_probs=46.0

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccccCccCCCCC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRGDTL  302 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~~i  302 (303)
                      ......+|.|||+.-++.   ..+.|||.||+.||.+||+.+   ..||+||..|..++++
T Consensus        43 ~~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv  100 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV  100 (230)
T ss_pred             CCCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence            344678899999997666   788899999999999999764   5689999999877654

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.05  E-value=1.4e-10  Score=75.80  Aligned_cols=44  Identities=45%  Similarity=1.110  Sum_probs=37.0

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCc
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNI  296 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I  296 (303)
                      +|+||++.+  .+.....+|+|.||.+|+++|++. +..||.||.++
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  334556669999999999999987 77899999864

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.04  E-value=1.6e-10  Score=85.95  Aligned_cols=52  Identities=35%  Similarity=0.781  Sum_probs=41.0

Q ss_pred             CCCcceeeccccc--------CCC--ceEEeCCCCccChhhHHHHHhc---CCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYV--------DGA--ELYTLPCNHHFHCGCISKWLRI---NATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~--------~~~--~lr~LpC~H~FH~~CI~~WL~~---~~tCPlCR~~I~~~  299 (303)
                      +|+.|.||...|+        +|+  .+..-.|+|.||..||.+|++.   +.+||+||++...+
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            4788999999998        233  3444459999999999999975   57899999986543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.04  E-value=7.2e-11  Score=80.18  Aligned_cols=47  Identities=36%  Similarity=0.865  Sum_probs=39.7

Q ss_pred             CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      |+..|.||++...+   ...+||||. |+.+|..+|++.+.+||+||++|.
T Consensus         1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            35689999998554   688999999 999999999999999999999875

...

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.4e-10  Score=114.21  Aligned_cols=57  Identities=35%  Similarity=0.782  Sum_probs=49.0

Q ss_pred             cccCCCCCCcceeecccccCCCc--eEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          242 ELALHPEDSDCCICLSQYVDGAE--LYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       242 ~~~~~~ed~~C~ICL~~y~~~~~--lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++.....+..|.||++++..++.  .+.|||+|.||..|+.+|+++.++||+||..+..
T Consensus       284 ~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  284 ERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             HhhhhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            33455568899999999988765  7899999999999999999999999999995543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.95  E-value=3.4e-10  Score=72.77  Aligned_cols=39  Identities=44%  Similarity=1.033  Sum_probs=33.8

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlC  292 (303)
                      |+||++.+.+  .+..++|||.|+.+|+.+|++.+.+||.|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            7899998877  46789999999999999999999999998

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.87  E-value=1.5e-09  Score=71.61  Aligned_cols=44  Identities=27%  Similarity=0.724  Sum_probs=39.5

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY  294 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~  294 (303)
                      .|.||+++|.++...+.++|||.|+.+|+.+.......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999977777899999999999999999866789999985

>PHA02926 zinc finger-like protein; Provisional

Probab=98.83  E-value=1.7e-09  Score=93.77  Aligned_cols=52  Identities=31%  Similarity=0.748  Sum_probs=38.9

Q ss_pred             CCCCCcceeecccccCC-----CceEEeC-CCCccChhhHHHHHhcC------CCCcccccCcc
Q 022069          246 HPEDSDCCICLSQYVDG-----AELYTLP-CNHHFHCGCISKWLRIN------ATCPLCKYNIR  297 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~-----~~lr~Lp-C~H~FH~~CI~~WL~~~------~tCPlCR~~I~  297 (303)
                      ..++.+|+||++..-+.     ..-..|+ |+|.||..||++|.+.+      .+||+||....
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            44568899999986332     1234554 99999999999999753      35999998653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.4e-09  Score=89.70  Aligned_cols=51  Identities=27%  Similarity=0.635  Sum_probs=44.5

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      -..|+|||+.|++... .-+.|||+|+++||+.-++....||+|++.|.+++
T Consensus       131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            3679999999988744 35789999999999999999999999999887664

>smart00504 Ubox Modified RING finger domain

Probab=98.76  E-value=7.4e-09  Score=73.34  Aligned_cols=49  Identities=27%  Similarity=0.391  Sum_probs=43.5

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..|+||.+-++++   ..+||||.|...||.+|++.+.+||.|+.++..++.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l   50 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL   50 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence            4699999999886   678999999999999999999999999999866554

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>smart00184 RING Ring finger

Probab=98.75  E-value=6.2e-09  Score=65.54  Aligned_cols=38  Identities=50%  Similarity=1.154  Sum_probs=33.0

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCccc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlC  292 (303)
                      |+||++.   ......+||+|.||..|+++|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899888   34568899999999999999998 66789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.73  E-value=3.8e-09  Score=68.45  Aligned_cols=39  Identities=46%  Similarity=1.129  Sum_probs=34.3

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHh--cCCCCccc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLR--INATCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~--~~~tCPlC  292 (303)
                      |+||++.+.++.  +.++|+|.|+.+|+.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            789999988763  5889999999999999998  55689998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.67  E-value=9.4e-09  Score=67.13  Aligned_cols=38  Identities=37%  Similarity=0.954  Sum_probs=30.3

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCccc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlC  292 (303)
                      |+||++-|.++   ..|+|||.|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999998   889999999999999999764    369988

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=6.1e-09  Score=92.35  Aligned_cols=53  Identities=40%  Similarity=0.770  Sum_probs=44.6

Q ss_pred             CCCCCcceeecccccCCC-------ceEEeCCCCccChhhHHHHH--hcCCCCcccccCccC
Q 022069          246 HPEDSDCCICLSQYVDGA-------ELYTLPCNHHFHCGCISKWL--RINATCPLCKYNIRR  298 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~-------~lr~LpC~H~FH~~CI~~WL--~~~~tCPlCR~~I~~  298 (303)
                      ..+|..|++|-..+....       +..+|.|+|.||..||+.|-  -++++||-||..+.-
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            346788999998886554       67899999999999999995  678999999987753

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.9e-08  Score=94.62  Aligned_cols=51  Identities=27%  Similarity=0.817  Sum_probs=40.7

Q ss_pred             CCCcceeecccccCC---C-----------ceEEeCCCCccChhhHHHHHh-cCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDG---A-----------ELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~---~-----------~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~  298 (303)
                      ...+|+||+.+.+-.   .           .-..+||+|+||..|+.+|+. .+-.||.||.++++
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            346799999987521   1           123579999999999999999 67799999999875

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.57  E-value=4.1e-08  Score=71.34  Aligned_cols=44  Identities=34%  Similarity=0.618  Sum_probs=32.9

Q ss_pred             eecccccCCCce--EEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          254 ICLSQYVDGAEL--YTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       254 ICL~~y~~~~~l--r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      -|-....++++.  ..=.|+|.||..||.+||+.+..||++|+...
T Consensus        36 eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          36 ECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             ccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            333333345543  33349999999999999999999999998754

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.56  E-value=4.2e-08  Score=66.19  Aligned_cols=42  Identities=31%  Similarity=0.796  Sum_probs=33.5

Q ss_pred             cceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccc
Q 022069          251 DCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCK  293 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR  293 (303)
                      .|-||++ .+++++...+||.     |.+|.+|+++|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3899999 4445555689985     999999999999554  5899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.54  E-value=4.4e-08  Score=93.31  Aligned_cols=50  Identities=26%  Similarity=0.576  Sum_probs=43.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      .....|+||++.|.+.   ..+||+|.||..||..|+.....||+||..+...
T Consensus        24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            3567899999999776   5789999999999999999888999999988654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=7.8e-08  Score=85.44  Aligned_cols=53  Identities=26%  Similarity=0.676  Sum_probs=45.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHH-HHhcCCC-CcccccCccCCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK-WLRINAT-CPLCKYNIRRGDTL  302 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~-WL~~~~t-CPlCR~~I~~~~~i  302 (303)
                      ..|..|.||++..+..   ..+||||+|+..||-. |-+++.. ||+||+.+.+++.+
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~vi  267 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVI  267 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhhh
Confidence            4578899999987765   8899999999999999 9877766 99999998877765

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.5e-08  Score=71.14  Aligned_cols=49  Identities=35%  Similarity=0.845  Sum_probs=37.1

Q ss_pred             CCcceeeccccc--------CCCceE-Ee-CCCCccChhhHHHHHhc---CCCCcccccCcc
Q 022069          249 DSDCCICLSQYV--------DGAELY-TL-PCNHHFHCGCISKWLRI---NATCPLCKYNIR  297 (303)
Q Consensus       249 d~~C~ICL~~y~--------~~~~lr-~L-pC~H~FH~~CI~~WL~~---~~tCPlCR~~I~  297 (303)
                      +..|.||...|+        ++|..- .+ .|.|.||..||.+|+..   ++.||+||+...
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            448999999987        233322 23 39999999999999965   367999998754

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.23  E-value=6.3e-07  Score=84.91  Aligned_cols=52  Identities=35%  Similarity=0.928  Sum_probs=42.8

Q ss_pred             cCCCCCCcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          244 ALHPEDSDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       244 ~~~~ed~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ....|-.+|++||+.+.+.. .++...|.|.||..|+.+|  -..+||+||.--.
T Consensus       170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            34456789999999998764 4566779999999999999  5689999998655

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.17  E-value=6.3e-07  Score=65.70  Aligned_cols=51  Identities=24%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~  301 (303)
                      +...|+|+.+-+.++   ..+|+||.|-..||.+|++. +.+||+|+.++..++.
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            456799999999997   78999999999999999998 8899999999877654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.15  E-value=4.1e-07  Score=66.13  Aligned_cols=49  Identities=33%  Similarity=0.798  Sum_probs=23.6

Q ss_pred             CCcceeecccccCCCce--EEe---CCCCccChhhHHHHHhc-----------CCCCcccccCcc
Q 022069          249 DSDCCICLSQYVDGAEL--YTL---PCNHHFHCGCISKWLRI-----------NATCPLCKYNIR  297 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~l--r~L---pC~H~FH~~CI~~WL~~-----------~~tCPlCR~~I~  297 (303)
                      +.+|.||.+...++++.  ..-   .|++.||..|+.+||+.           ..+||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            35799999987633322  222   48999999999999953           135999999874

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.15  E-value=9.7e-07  Score=57.76  Aligned_cols=38  Identities=32%  Similarity=0.770  Sum_probs=22.7

Q ss_pred             ceeecccccCC-CceEEeCCCCccChhhHHHHHhcCC----CCc
Q 022069          252 CCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINA----TCP  290 (303)
Q Consensus       252 C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~----tCP  290 (303)
                      |+||.+ |.++ ...+.|||||.|..+|++++++.+.    .||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 7554 4558899999999999999998542    576

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1e-06  Score=84.90  Aligned_cols=50  Identities=30%  Similarity=0.648  Sum_probs=41.1

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-----CCCcccccCccCCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-----ATCPLCKYNIRRGDT  301 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~~~  301 (303)
                      +..|+|||+...-.   ..+.|||+||..||-+.+...     ..||+||..|..+|.
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl  240 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL  240 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence            78899999986655   455599999999999988654     579999999887664

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.07  E-value=1e-06  Score=80.71  Aligned_cols=48  Identities=31%  Similarity=0.737  Sum_probs=43.3

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ..|-||.+-|..+   ..+||+|.||.-||+..|..+..||+|+.++.+.+
T Consensus        24 LRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   24 LRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence            4699999998887   88999999999999999999999999999876543

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.05  E-value=9.9e-07  Score=89.80  Aligned_cols=50  Identities=30%  Similarity=0.784  Sum_probs=37.4

Q ss_pred             CCCcceeeccccc-CC-C-ceEEeC-CCCccChhhHHHHHhcC--CCCcccccCcc
Q 022069          248 EDSDCCICLSQYV-DG-A-ELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~-~~-~-~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~  297 (303)
                      ...+|+||..-.. .+ . +-...| |.|-||..|+.+|++..  .+||+||.++.
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4578999987765 12 1 112333 88999999999999874  68999998875

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=4.3e-06  Score=77.55  Aligned_cols=49  Identities=33%  Similarity=0.776  Sum_probs=41.6

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++..+|.||+++-.+   ...|||+|. .|+.|-+.-.-++..||+||+++.+
T Consensus       288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            456789999998555   589999999 8999999977678899999999853

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=2.2e-06  Score=65.46  Aligned_cols=48  Identities=35%  Similarity=0.753  Sum_probs=35.7

Q ss_pred             CCcceeeccccc------------CCCce--EEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069          249 DSDCCICLSQYV------------DGAEL--YTLPCNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~------------~~~~l--r~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      -+.|+||..-+-            ..++.  .-=-|+|.||.-||.+||+++..||||.++-
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            467999875431            12232  2334999999999999999999999997764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.86  E-value=7e-06  Score=73.92  Aligned_cols=44  Identities=27%  Similarity=0.610  Sum_probs=40.0

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      ..|-||-+.+..+   .+++|||-||.-||+.-|..+..||+||.+-
T Consensus        26 lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~   69 (391)
T COG5432          26 LRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDP   69 (391)
T ss_pred             HHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccH
Confidence            4699999888876   7889999999999999999999999999864

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=6.1e-06  Score=74.84  Aligned_cols=46  Identities=30%  Similarity=0.774  Sum_probs=40.8

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY  294 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~  294 (303)
                      ..+...|+||++.|.+.   +.+||+|.|+..|+..+......||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            34667899999999998   89999999999999999886678999993

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.75  E-value=7.9e-06  Score=73.89  Aligned_cols=51  Identities=27%  Similarity=0.852  Sum_probs=43.8

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHh-----------------------cCCCCcccccCccCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-----------------------INATCPLCKYNIRRG  299 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-----------------------~~~tCPlCR~~I~~~  299 (303)
                      ...|.|||-.|.+++....++|.|.||..|+.+.|.                       ..+.||+||..|..+
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            356999999999999999999999999999998872                       124699999988654

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.74  E-value=9.4e-06  Score=81.48  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=43.9

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      ..|++||..+.++.....-+|+|.||..||+.|-+.-.+||+||....+-
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            45999999998887777788999999999999999999999999876543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=9.9e-06  Score=54.78  Aligned_cols=47  Identities=26%  Similarity=0.699  Sum_probs=34.0

Q ss_pred             CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHh-cCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLR-INATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~-~~~tCPlCR~~I~  297 (303)
                      .+++|.||.+.-.+.   ....|||+ .+-+|-.+-.+ .+..||+||++|.
T Consensus         6 ~~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    6 WSDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            347899997764332   44569998 66777655444 7899999999874

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=4e-05  Score=71.94  Aligned_cols=50  Identities=34%  Similarity=0.881  Sum_probs=39.2

Q ss_pred             CCCCcceeecccccCCC----ceEEeC-CCCccChhhHHHHH--hc-----CCCCcccccCc
Q 022069          247 PEDSDCCICLSQYVDGA----ELYTLP-CNHHFHCGCISKWL--RI-----NATCPLCKYNI  296 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CI~~WL--~~-----~~tCPlCR~~I  296 (303)
                      ..+.+|.||++...+..    ..+.|| |.|.|+..||++|-  ++     +..||.||...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            46788999999876543    134557 99999999999998  33     46899999764

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=2.6e-05  Score=72.18  Aligned_cols=49  Identities=37%  Similarity=0.629  Sum_probs=40.8

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhc-CCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI-NATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  299 (303)
                      .+..|+|||+-+..-   +..+ |.|-|+.+||.+-++. +.+||.||+.+..+
T Consensus        42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            456799999987765   6666 9999999999999865 68999999987654

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.26  E-value=0.00018  Score=76.45  Aligned_cols=54  Identities=31%  Similarity=0.718  Sum_probs=45.0

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----------CCCcccccCccC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----------ATCPLCKYNIRR  298 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----------~tCPlCR~~I~~  298 (303)
                      ....|+.|-||+.+--...+..+|.|+|+||..|.++-|.+.          -+||+|+.+|.+
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            444577899999988777888999999999999999887653          369999998753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.24  E-value=7.6e-05  Score=69.87  Aligned_cols=45  Identities=33%  Similarity=0.721  Sum_probs=38.2

Q ss_pred             CcceeecccccC-CCceEEeCCCCccChhhHHHHHhcC--CCCccccc
Q 022069          250 SDCCICLSQYVD-GAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKY  294 (303)
Q Consensus       250 ~~C~ICL~~y~~-~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~  294 (303)
                      -.|..|-+.|-. ++.+-.|||.|+||..|+.+.|.+|  .+||-||+
T Consensus       366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            459999998854 4567889999999999999999877  47999983

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.23  E-value=9.9e-05  Score=69.27  Aligned_cols=51  Identities=25%  Similarity=0.779  Sum_probs=42.0

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcccccCccCCCCCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCKYNIRRGDTLV  303 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~~i~  303 (303)
                      ..|.||-+.   +..++.=||||..|..|+..|-..  .++||.||.+|...+.++
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi  422 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI  422 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence            459999664   556789999999999999999844  579999999998776553

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00017  Score=69.01  Aligned_cols=49  Identities=27%  Similarity=0.775  Sum_probs=43.4

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ..+.+|+||...+.+.   ..+||||.|+..||++-+..+..||+||.++.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence            5678899998888877   677999999999999999989999999998764

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.19  E-value=0.00011  Score=51.87  Aligned_cols=47  Identities=26%  Similarity=0.623  Sum_probs=23.8

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      -.|++|.+-+.++  +....|.|.|++.||..-+.  ..||+|+.+--..|
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD   54 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD   54 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence            4599999887765  44556999999999988443  56999998875554

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.94  E-value=0.00034  Score=56.66  Aligned_cols=36  Identities=19%  Similarity=0.546  Sum_probs=31.6

Q ss_pred             CCcceeecccccCCCceEEeCCC------CccChhhHHHHHh
Q 022069          249 DSDCCICLSQYVDGAELYTLPCN------HHFHCGCISKWLR  284 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~------H~FH~~CI~~WL~  284 (303)
                      ..+|+||++...+++.+..++|+      |+||.+|+.+|-+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            46899999999997778888887      9999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA02862 5L protein; Provisional

Probab=96.90  E-value=0.00069  Score=55.29  Aligned_cols=44  Identities=25%  Similarity=0.622  Sum_probs=33.9

Q ss_pred             CCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhc--CCCCcccccCc
Q 022069          249 DSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRI--NATCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~--~~tCPlCR~~I  296 (303)
                      ++.|=||.++.+++    .-||+     ..-|.+|+.+|++.  +..||+||.+.
T Consensus         2 ~diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          2 SDICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CCEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            35799999985443    35654     67899999999965  46899999865

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.82  E-value=0.00064  Score=65.50  Aligned_cols=54  Identities=28%  Similarity=0.679  Sum_probs=44.8

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..++..|++|.....++-..  +.|||.|+..|+.+|+..+..||.|+.++...+.
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~--~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQT--TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccCCCCC--CCCCCcccccccchhhccCcCCcccccccchhhc
Confidence            34667899999999887222  5899999999999999999999999988765543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.81  E-value=0.00059  Score=45.52  Aligned_cols=40  Identities=33%  Similarity=0.900  Sum_probs=27.8

Q ss_pred             ceeecccccCCCceEEeCCC-----CccChhhHHHHHhc--CCCCccc
Q 022069          252 CCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRI--NATCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~--~~tCPlC  292 (303)
                      |-||+++-++++ ....||+     ..-|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            678999877765 3467864     47899999999964  5679988

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0016  Score=56.97  Aligned_cols=54  Identities=26%  Similarity=0.571  Sum_probs=43.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--------CCCCcccccCccCCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--------NATCPLCKYNIRRGDTL  302 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--------~~tCPlCR~~I~~~~~i  302 (303)
                      .+..|..|-...+.+|.+ .|-|-|.||.+|+++|-..        .-.||-|..+|.+.-.+
T Consensus        49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl  110 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL  110 (299)
T ss_pred             CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence            456799999999998765 6889999999999999743        23699999998775443

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.62  E-value=0.00074  Score=46.94  Aligned_cols=41  Identities=24%  Similarity=0.587  Sum_probs=29.0

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcc
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPL  291 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPl  291 (303)
                      ...|+|.+..++++  ++...|+|.|-++.|.++++.  ...||.
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            46799999998876  777789999999999999944  457998

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.00053  Score=69.47  Aligned_cols=50  Identities=22%  Similarity=0.581  Sum_probs=40.6

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT  301 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~  301 (303)
                      --.|+.|-....+.   ....|+|.||.+||.+-+.. ...||.|.++....|.
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv  693 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV  693 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence            35799998665553   45569999999999999865 4689999999988875

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.00078  Score=55.94  Aligned_cols=39  Identities=28%  Similarity=0.615  Sum_probs=34.1

Q ss_pred             CcccccCCCCCCcceeecccccCCCceEEeCCCCccChh
Q 022069          239 STDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCG  277 (303)
Q Consensus       239 ~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~  277 (303)
                      ++.+..+..+..||.|||++++.++.+..|||--+||+.
T Consensus       167 sYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK~  205 (205)
T KOG0801|consen  167 SYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHKQ  205 (205)
T ss_pred             ccccchhcccCCcEEEEhhhccCCCceeccceEEEeecC
Confidence            455667777889999999999999999999999999973

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=96.58  E-value=0.002  Score=53.60  Aligned_cols=47  Identities=30%  Similarity=0.668  Sum_probs=34.5

Q ss_pred             CCCCCcceeecccccCCCceEEeCCC--C---ccChhhHHHHHhc--CCCCcccccCc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCN--H---HFHCGCISKWLRI--NATCPLCKYNI  296 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I  296 (303)
                      +..+.+|=||.++..+  .  .-||.  .   .-|.+|+++|+..  +.+||+|+++.
T Consensus         5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y   58 (162)
T PHA02825          5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPY   58 (162)
T ss_pred             CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeE
Confidence            3456789999988542  2  24754  4   5699999999965  45799998865

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.0042  Score=58.93  Aligned_cols=47  Identities=32%  Similarity=0.736  Sum_probs=38.0

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--------CCCccccc
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--------ATCPLCKY  294 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--------~tCPlCR~  294 (303)
                      .-.+|+||+++..-.+-...|||+|+|++.|....+.+.        -.||-++-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            346799999987666788999999999999999998543        35887653

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.79  E-value=0.0031  Score=54.19  Aligned_cols=44  Identities=23%  Similarity=0.491  Sum_probs=38.9

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      ..|.||-.+|+.+   ..+.|||+|+..|..+=++...+|-.|-+..
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            4799999999997   6788999999999999888899999996643

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.79  E-value=0.0038  Score=41.65  Aligned_cols=45  Identities=20%  Similarity=0.528  Sum_probs=21.6

Q ss_pred             ceeecccccCCC-ceEEeCCCCccChhhHHHHHh-cCCCCcccccCc
Q 022069          252 CCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLR-INATCPLCKYNI  296 (303)
Q Consensus       252 C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I  296 (303)
                      |++|.++....+ ...--+|++..+..|...-++ .+..||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            678888883332 333344889999999888775 478999999863

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.79  E-value=0.0047  Score=63.28  Aligned_cols=50  Identities=34%  Similarity=0.815  Sum_probs=38.6

Q ss_pred             CCCCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcC-------CCCccccc
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRIN-------ATCPLCKY  294 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~-------~tCPlCR~  294 (303)
                      +.....+|.||.+.+..-+.+=-- .|-|+||..||.+|.+..       =.||-|+.
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            344557899999998877665333 399999999999998652       15999984

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.013  Score=52.98  Aligned_cols=53  Identities=25%  Similarity=0.446  Sum_probs=39.9

Q ss_pred             ccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcccccCcc
Q 022069          243 LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKYNIR  297 (303)
Q Consensus       243 ~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~~I~  297 (303)
                      ++....+.+|++|-+.=..  +....||+|+||-.||..=....  -+||.|-.++.
T Consensus       233 ss~~t~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  233 SSTGTSDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cccccCCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3445578899999776332  34566799999999999976543  58999988775

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.76  E-value=0.0041  Score=48.29  Aligned_cols=35  Identities=26%  Similarity=0.710  Sum_probs=29.0

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHH
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK  281 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~  281 (303)
                      -.++..|++|-..+.+ ......||||.||..|+++
T Consensus        75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIKR  109 (109)
T ss_pred             ECCCCCccCcCCcCCC-ceEEEeCCCeEEecccccC
Confidence            3456779999999877 5678899999999999763

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.0098  Score=52.81  Aligned_cols=55  Identities=15%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRGDTL  302 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i  302 (303)
                      ....|++|.+.+.+...+..|. |||+|..+|+++.++.-..||+|-.++.++|.|
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            5577999999999988887775 999999999999999999999999999888765

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.0099  Score=55.60  Aligned_cols=46  Identities=28%  Similarity=0.673  Sum_probs=33.9

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      .+....|.||+++..+   ...+||||+-+  |..-- +...+||+||..|.
T Consensus       302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            3445679999998666   48899999955  65543 34556999998774

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.00094  Score=62.69  Aligned_cols=50  Identities=24%  Similarity=0.628  Sum_probs=45.1

Q ss_pred             CCcceeecccccCC-CceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          249 DSDCCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       249 d~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ...|+||...|... +.+..+-|||.+|.+|+.+||.....||.|++.+..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence            35699999999887 788899999999999999999999999999998764

>PHA03096 p28-like protein; Provisional

Probab=95.12  E-value=0.0097  Score=54.77  Aligned_cols=44  Identities=27%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CcceeecccccCCC----ceEEeC-CCCccChhhHHHHHhcC---CCCcccc
Q 022069          250 SDCCICLSQYVDGA----ELYTLP-CNHHFHCGCISKWLRIN---ATCPLCK  293 (303)
Q Consensus       250 ~~C~ICL~~y~~~~----~lr~Lp-C~H~FH~~CI~~WL~~~---~tCPlCR  293 (303)
                      .+|.||++...+..    .-..|+ |.|.|+..|++.|...+   .+||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            67999999876532    335688 99999999999998543   3455554

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.02  E-value=0.013  Score=40.07  Aligned_cols=46  Identities=26%  Similarity=0.546  Sum_probs=34.7

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      .|..|...   +..-..+||+|.-...|.+.+  +-+-||+|-+++..++.
T Consensus         9 ~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~   54 (55)
T PF14447_consen    9 PCVFCGFV---GTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP   54 (55)
T ss_pred             eEEEcccc---ccccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence            45555444   333478999999999997764  66789999999887763

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.97  E-value=0.0096  Score=58.13  Aligned_cols=48  Identities=27%  Similarity=0.680  Sum_probs=37.8

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHh-----cCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-----INATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-----~~~tCPlCR~~I~~  298 (303)
                      +..+|.+|-+.-++.   .+..|.|.||.-||.+...     .+-+||.|...+.-
T Consensus       535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            456799998875544   7888999999999998873     35799999876643

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.0086  Score=54.53  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=40.1

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ..|-||...|.++   ..+.|+|.|+..|--+=++....|++|-+++-
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccc
Confidence            4599999999998   78889999999999998898999999987653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.93  E-value=0.017  Score=54.79  Aligned_cols=32  Identities=41%  Similarity=0.975  Sum_probs=25.9

Q ss_pred             ceEEeCCCCccChhhHHHHHhc--CCCCcccccC
Q 022069          264 ELYTLPCNHHFHCGCISKWLRI--NATCPLCKYN  295 (303)
Q Consensus       264 ~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~  295 (303)
                      .+..+.|||.|-.+||++||.+  +..||.|+..
T Consensus        21 r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen   21 RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            4556779999999999999953  3579999754

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.79  E-value=0.018  Score=53.73  Aligned_cols=48  Identities=31%  Similarity=0.622  Sum_probs=41.4

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      .||..|+||...   +..-...||+|.=+..||.+-+-+++.|=.||+.+.
T Consensus       420 sEd~lCpICyA~---pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecc---cchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            578889999655   444478899999999999999999999999999775

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.76  E-value=0.008  Score=55.55  Aligned_cols=51  Identities=29%  Similarity=0.639  Sum_probs=40.9

Q ss_pred             CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      .+...+|.+|-.-+-+.   ...+ |-|-||+.||.+.|..+.+||.|...|-+.
T Consensus        12 ~n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            34567899997776665   3334 999999999999999999999998776543

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.86  E-value=0.073  Score=44.40  Aligned_cols=37  Identities=24%  Similarity=0.589  Sum_probs=24.3

Q ss_pred             CCCcceeecccccCCCce---------EEeCCC-CccChhhHHHHHh
Q 022069          248 EDSDCCICLSQYVDGAEL---------YTLPCN-HHFHCGCISKWLR  284 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~l---------r~LpC~-H~FH~~CI~~WL~  284 (303)
                      ||..|+|||+-=.+...+         |-.-|+ -.=|..|+|+.-+
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            578899999875554222         122254 3468999999764

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.59  E-value=0.036  Score=50.58  Aligned_cols=45  Identities=27%  Similarity=0.648  Sum_probs=35.0

Q ss_pred             CcceeecccccCCCceEEeC-CCCccChhhHHHHH-hcCCCCccc-ccCcc
Q 022069          250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL-RINATCPLC-KYNIR  297 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL-~~~~tCPlC-R~~I~  297 (303)
                      ..|+.|-.-..+.   ..+| |+|.|+.+||..-| .....||.| |++++
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            5699988776665   5667 89999999999876 455789999 54554

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.19  E-value=0.14  Score=47.78  Aligned_cols=48  Identities=27%  Similarity=0.682  Sum_probs=36.3

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHH--HhcCCCCcccccCc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKW--LRINATCPLCKYNI  296 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~W--L~~~~tCPlCR~~I  296 (303)
                      .++...|.||-....-   ...+||+|..+--|--+-  |..+..||+||..-
T Consensus        58 DEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          58 DEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3445569999877544   378999999998897653  46678999999853

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=93.14  E-value=0.047  Score=49.89  Aligned_cols=45  Identities=27%  Similarity=0.594  Sum_probs=38.6

Q ss_pred             CcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCccccc
Q 022069          250 SDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKY  294 (303)
Q Consensus       250 ~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~  294 (303)
                      ..|+||.+.+.+.. .+..++|||.-|..|..+-...+-+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            34999998876654 4578999999999999999888899999987

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.03  E-value=0.094  Score=47.76  Aligned_cols=55  Identities=16%  Similarity=0.396  Sum_probs=44.1

Q ss_pred             CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL  302 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i  302 (303)
                      .....|+|...++........+ ||||+|-..++++- +....||+|-.+....|.|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEE
Confidence            3456799999999666655555 79999999999996 3456899999998877765

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.23  Score=46.14  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=38.4

Q ss_pred             CCCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCc
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      ..++...|++|+..-.++   ..+. =|-+||-.||-+.++....||+=-.+.
T Consensus       296 l~~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  296 LPPDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CCCccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            445667899999986665   3444 489999999999999999999865443

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.80  E-value=0.016  Score=52.77  Aligned_cols=43  Identities=28%  Similarity=0.649  Sum_probs=32.2

Q ss_pred             CCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      +..|+||++.   +-+...|+|||. =+.+|-.+    -+.||+||+-|.+
T Consensus       300 ~~LC~ICmDa---P~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDA---PRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcC---CcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence            6779999887   455689999998 35556544    2489999987654

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=92.66  E-value=0.094  Score=48.58  Aligned_cols=49  Identities=31%  Similarity=0.668  Sum_probs=37.9

Q ss_pred             CCcceeecccccCCCc-eEEeCCC-----CccChhhHHHHHh--cCCCCcccccCcc
Q 022069          249 DSDCCICLSQYVDGAE-LYTLPCN-----HHFHCGCISKWLR--INATCPLCKYNIR  297 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~-lr~LpC~-----H~FH~~CI~~WL~--~~~tCPlCR~~I~  297 (303)
                      +..|-||..+.++... ..+.||.     +..|..|+++|+.  .+.+|..|+....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~  134 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI  134 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence            5789999998765432 4677875     7789999999997  5568999987554

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.46  E-value=0.089  Score=46.30  Aligned_cols=40  Identities=28%  Similarity=0.620  Sum_probs=29.8

Q ss_pred             ceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          252 CCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      |-.|-++   +..+..+||.|+ ++..|=+.    -.+||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            8788554   666899999987 77778554    3569999987543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=0.094  Score=44.48  Aligned_cols=47  Identities=34%  Similarity=0.815  Sum_probs=31.9

Q ss_pred             cceeecccccCCC----ceEEeCCCCccChhhHHHHHhcC-----------CCCcccccCcc
Q 022069          251 DCCICLSQYVDGA----ELYTLPCNHHFHCGCISKWLRIN-----------ATCPLCKYNIR  297 (303)
Q Consensus       251 ~C~ICL~~y~~~~----~lr~LpC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~  297 (303)
                      .|.||..---+|.    ..--..||.-||.-|+..||+.-           ..||.|..+|.
T Consensus       167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            4666654322322    12235699999999999999631           46999988874

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.20  E-value=0.11  Score=46.54  Aligned_cols=48  Identities=27%  Similarity=0.791  Sum_probs=33.2

Q ss_pred             CCcceeecccccCCCce-EEeCC-----CCccChhhHHHHHhcCC--------CCcccccCc
Q 022069          249 DSDCCICLSQYVDGAEL-YTLPC-----NHHFHCGCISKWLRINA--------TCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~l-r~LpC-----~H~FH~~CI~~WL~~~~--------tCPlCR~~I  296 (303)
                      +..|-||+..=+|+..- =.=||     .|.-|..|+.+|+..+.        +||-|+++.
T Consensus        20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            34466999885554221 13355     39999999999995432        599998764

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=90.63  E-value=0.064  Score=55.16  Aligned_cols=47  Identities=30%  Similarity=0.740  Sum_probs=37.9

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhc--CCCCcccccCccCCC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCKYNIRRGD  300 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--~~tCPlCR~~I~~~~  300 (303)
                      ..|.||++    .+.....+|+|.|+.+|+.+-+..  ++.||+||..+..++
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999    445678999999999999988754  356999998775543

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.56  E-value=0.18  Score=51.84  Aligned_cols=53  Identities=25%  Similarity=0.743  Sum_probs=39.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~  300 (303)
                      ++++.|-||..+=.+++++ -=||+     ...|.+|+.+|+.-.  ..|-+|++++.-++
T Consensus        10 ~d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~   69 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD   69 (1175)
T ss_pred             ccchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence            3567899999987666654 34543     568999999999654  46999999876544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.24  E-value=0.15  Score=52.77  Aligned_cols=42  Identities=24%  Similarity=0.629  Sum_probs=33.7

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      ..|..|-...+-+  ..-..|+|.||..|+.   +....||-|+.+.
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            5799998876654  5566799999999999   5667899998743

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=89.95  E-value=0.098  Score=34.07  Aligned_cols=41  Identities=29%  Similarity=0.719  Sum_probs=20.3

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHhcCC--CCccc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA--TCPLC  292 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~--tCPlC  292 (303)
                      |.+|-+-...|+.-..-.|+=.+|..|++.+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            334444444442221223888899999999997765  79987

; PDB: 3NW0_A 2CT0_A.

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.87  E-value=0.14  Score=53.21  Aligned_cols=35  Identities=26%  Similarity=0.702  Sum_probs=28.6

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHH
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL  283 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL  283 (303)
                      .+..|.+|...+... +-..-||||.||.+|+.+=.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            456799998887654 56789999999999998765

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.72  E-value=0.18  Score=50.88  Aligned_cols=51  Identities=31%  Similarity=0.832  Sum_probs=41.9

Q ss_pred             cCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          244 ALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       244 ~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ........|.||+.+.    ..|..+|.   |..|+.+|+..+..||+|+..+..++.
T Consensus       474 ~l~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  474 QLREPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF  524 (543)
T ss_pred             hhhcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence            3444567799999987    45788899   999999999999999999887766553

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.04  E-value=0.43  Score=45.39  Aligned_cols=28  Identities=25%  Similarity=0.852  Sum_probs=21.7

Q ss_pred             CCCccChhhHHHHHhc-------------CCCCcccccCcc
Q 022069          270 CNHHFHCGCISKWLRI-------------NATCPLCKYNIR  297 (303)
Q Consensus       270 C~H~FH~~CI~~WL~~-------------~~tCPlCR~~I~  297 (303)
                      |.-+.|.+|+.+|+-.             +.+||+||+...
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            5577889999999832             357999999754

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=0.15  Score=46.91  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=32.2

Q ss_pred             ccCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          243 LALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       243 ~~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      +.+.+..-.|--|=-.  -.---|..||+|+||.+|-+.  ..-..||+|-..|.
T Consensus        84 k~l~p~VHfCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   84 KQLGPRVHFCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             cccCcceEeecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence            3333334445556322  222348899999999999654  33568999976554

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=88.45  E-value=0.55  Score=32.10  Aligned_cols=44  Identities=27%  Similarity=0.723  Sum_probs=34.4

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcc--cccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPL--CKYN  295 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPl--CR~~  295 (303)
                      +...|.+|-+.+.+++.+..-| |+-.+|.+|-++    ...|-.  |.++
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            3456999999999888888998 999999999554    455654  5443

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.35  E-value=0.17  Score=33.45  Aligned_cols=33  Identities=21%  Similarity=0.617  Sum_probs=23.6

Q ss_pred             EeCCC-CccChhhHHHHHhcCCCCcccccCccCC
Q 022069          267 TLPCN-HHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       267 ~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      ...|+ |..+..|+..-+.+...||+|+.+++.+
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            45686 9999999999999999999999988753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=85.90  E-value=0.18  Score=51.39  Aligned_cols=49  Identities=31%  Similarity=0.653  Sum_probs=40.4

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~  299 (303)
                      ...+|.||+..|.++   ..+.|.|.|...|+..-+...   ..||+|+..+.+.
T Consensus        20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            457899999999887   677899999999988876443   4799999877654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.59  E-value=0.52  Score=43.98  Aligned_cols=52  Identities=19%  Similarity=0.535  Sum_probs=36.2

Q ss_pred             CCCcceeecccccCCCc-eEEeCCCCccChhhHHHHH-hcCCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~  299 (303)
                      |++-|+.|+++++-.|. ..-.|||-..|.-|-..-- ..|.+||-||+...++
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            44559999999875543 4567799777777754432 2468999999865443

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.79  E-value=0.22  Score=50.00  Aligned_cols=43  Identities=35%  Similarity=0.664  Sum_probs=33.6

Q ss_pred             CcceeecccccCCC-ceEEeCCCCccChhhHHHHHhcCCCCcccccC
Q 022069          250 SDCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRINATCPLCKYN  295 (303)
Q Consensus       250 ~~C~ICL~~y~~~~-~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~  295 (303)
                      ..|.||+..|.... +.+-|-|||.-+..|+..-  .|++|| |+++
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D   55 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD   55 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence            56889999887654 3356669999999999874  578999 7664

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=83.90  E-value=0.81  Score=47.19  Aligned_cols=52  Identities=10%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             CCCCCcceeecccccCC-CceEEeC---CCCccChhhHHHHHhc------CCCCcccccCcc
Q 022069          246 HPEDSDCCICLSQYVDG-AELYTLP---CNHHFHCGCISKWLRI------NATCPLCKYNIR  297 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~-~~lr~Lp---C~H~FH~~CI~~WL~~------~~tCPlCR~~I~  297 (303)
                      ..+...|.+|..++.++ +..-.+|   |+|.|+..||..|..+      +-.||+|...+.
T Consensus        93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            34455677777777663 3345666   9999999999999943      457999988764

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=82.82  E-value=0.32  Score=52.52  Aligned_cols=46  Identities=30%  Similarity=0.619  Sum_probs=38.6

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCc
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I  296 (303)
                      ...|.||++...+.  -....|||-+++.|...|++.+..||.|+...
T Consensus      1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence            45799999988732  15677999999999999999999999998543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.70  E-value=0.83  Score=46.91  Aligned_cols=39  Identities=31%  Similarity=0.796  Sum_probs=28.6

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcc
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPL  291 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPl  291 (303)
                      |.||--... +.-.....|+|+-|..|...|+++...||.
T Consensus      1031 C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence            666543322 223345679999999999999999999984

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=82.66  E-value=0.9  Score=42.23  Aligned_cols=46  Identities=20%  Similarity=0.565  Sum_probs=35.2

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      .+-.+|+||...+..+  +.+-+=||.-+..|=.   +.+..||.||.++.
T Consensus        46 ~~lleCPvC~~~l~~P--i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP--IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCccc--ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence            3457899999999886  3333336888888865   46789999999886

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.07  E-value=0.58  Score=42.81  Aligned_cols=28  Identities=29%  Similarity=0.743  Sum_probs=22.2

Q ss_pred             CCCccChhhHHHHH-------------hcCCCCcccccCcc
Q 022069          270 CNHHFHCGCISKWL-------------RINATCPLCKYNIR  297 (303)
Q Consensus       270 C~H~FH~~CI~~WL-------------~~~~tCPlCR~~I~  297 (303)
                      |.-..+.+|+.+|+             +.+.+||.||++..
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc  365 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC  365 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence            56778889999987             23578999999764

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=81.25  E-value=0.61  Score=41.52  Aligned_cols=47  Identities=30%  Similarity=0.747  Sum_probs=36.1

Q ss_pred             CCCcceeeccc-ccCCC-ceEEeC-CCCccChhhHHHHHhcC-CCCc--cccc
Q 022069          248 EDSDCCICLSQ-YVDGA-ELYTLP-CNHHFHCGCISKWLRIN-ATCP--LCKY  294 (303)
Q Consensus       248 ed~~C~ICL~~-y~~~~-~lr~Lp-C~H~FH~~CI~~WL~~~-~tCP--lCR~  294 (303)
                      +|..|++|-.+ |-+++ .+..-| |-|..|..|+++-+... +.||  -|-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            56789999877 44443 455567 99999999999999764 6899  7744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		5e-08
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		5e-07
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-06
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		8e-06
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		8e-05

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           C IC S+YV G     LPC+H+FH  C+S WL+ + TCP+C+
Sbjct: 43  CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           E + C +C+  +     L  LPCNH FH  C+ KWL+ N TCP+C+
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           C ICLS   +G ++  LPC H FH  C+ +WL  N  CP+C+ +I
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLC 292
           +S    EL LH     C +CL  +    EL   PC H FH  C+ KWL +   CPLC
Sbjct: 5   SSGKVKELNLH---ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT 301
           +C +C   Y  G  +  LPCNH FH  CI  WL  + +CP+C+ ++   +T
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296
           +C +CL++  DG E   LP C H FH  C+  WL  ++TCPLC+  +
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
           +S S+  +    ++ +CCIC+    DG     LPC H F   CI KW   +  CP+C+  
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57
Query: 296 I 296
           +
Sbjct: 58  M 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-24
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	8e-24
2ect_A	78	Ring finger protein 126; metal binding protein, st	4e-21
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	5e-20
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-20
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	1e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-13
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	3e-11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	3e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-11
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-11
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	9e-11
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	7e-10
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	9e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	8e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	2e-07
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	3e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-06
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	7e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	8e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	9e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-04
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	5e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	6e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	6e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 95.5 bits (238), Expect = 2e-25
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 30/101 (29%)

Query: 197 ASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICL 256
            S+     LP YR+   +H                                E + C +C+
Sbjct: 1   GSSGSSGQLPSYRFNPNNH------------------------------QSEQTLCVVCM 30

Query: 257 SQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297
             +     L  LPCNH FH  C+ KWL+ N TCP+C+ +  
Sbjct: 31  CDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 92.1 bits (229), Expect = 4e-24
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
           +S S+ ++        C +CL  +    EL   PC H FH  C+ KWL +   CPLC   
Sbjct: 2   SSGSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMP 61

Query: 296 IRRGDTL 302
           + +   L
Sbjct: 62  VLQLAQL 68

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 91.3 bits (227), Expect = 8e-24
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 241 DELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297
           +E      +  C ICLS   +G ++  LPC H FH  C+ +WL  N  CP+C+ +I 
Sbjct: 6   EEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 84.4 bits (209), Expect = 4e-21
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 235 SNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294
           S S+ T+E        +C +C   Y  G  +  LPCNH FH  CI  WL  + +CP+C+ 
Sbjct: 3   SGSSGTEEHV--GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRK 60

Query: 295 NIRRGDT 301
           ++   +T
Sbjct: 61  SLTGQNT 67

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 82.0 bits (203), Expect = 5e-20
 Identities = 22/57 (38%), Positives = 34/57 (59%)

Query: 240 TDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           T++     ++  C IC S+YV G     LPC+H+FH  C+S WL+ + TCP+C+   
Sbjct: 31  TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.9 bits (200), Expect = 6e-20
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYN 295
           +S S+  +    ++ +CCIC+    DG     LPC H F   CI KW   +  CP+C+  
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57

Query: 296 IRRGDT 301
           +   + 
Sbjct: 58  MTGANE 63

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 78.4 bits (194), Expect = 4e-19
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296
           +  +C +CL++  DG E   LP C H FH  C+  WL  ++TCPLC+  +
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297
               C ICL    + +    LPC H F   CI++W+R N TCPLCK  + 
Sbjct: 4   VAERCPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 249 DSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWLRINATCPLCKYNI 296
            S C ICL        +   LPC H  H  C  + L+    CPLC    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 236 NSNSTDELALHPEDSDCCICLSQYVD----GAELYTLPCNHHFHCGCISKWLRINATCPL 291
           +S S+           C IC+  Y +    G  + +  C H F   C+   L+   TCP 
Sbjct: 2   SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT 61

Query: 292 CKYNI 296
           C+  I
Sbjct: 62  CRKKI 66

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 62.6 bits (151), Expect = 3e-11
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 16/78 (20%)

Query: 235 SNSNSTDELALHPEDSDCCICLSQYVDGAEL-----YTLPCNHHFHCGCISKWLR----- 284
             S+         E+  C IC +  +DG E+         C    H  C+ +W +     
Sbjct: 294 DWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDG 353

Query: 285 ------INATCPLCKYNI 296
                     CP CK  +
Sbjct: 354 KTFLEVSFGQCPFCKAKL 371

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 252 CCICLSQYVD----GAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
           C IC+  Y +    G  + +  C H F   C+   L+   TCP C+  I    
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 57.1 bits (138), Expect = 3e-11
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 248 EDSDCCICLSQYVDGAE----LYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
               C IC+  Y +  +    + +  C H F   C+   L+   TCP C+  I    
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 56.4 bits (136), Expect = 7e-11
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 235 SNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKY 294
            +S S+   A      +C ICL   V      +LPC H F   C+     +   C LC+ 
Sbjct: 1   GSSGSSGNTAPSLTVPECAICLQTCVHPV---SLPCKHVFCYLCVKGASWLGKRCALCRQ 57

Query: 295 NI 296
            I
Sbjct: 58  EI 59

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 58.1 bits (140), Expect = 9e-11
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 201 DIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYV 260
             ++           L  +   +++     E  +S+ N   E      +  C IC   ++
Sbjct: 21  SKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLE-----NELQCIICSEYFI 75

Query: 261 DGAELYTLPCNHHFHC-GCISKWLRINATCPLCKYNIRR 298
           +     TL C H F C  CI++W++    CP+C+ +I+ 
Sbjct: 76  EAV---TLNCAHSF-CSYCINEWMKRKIECPICRKDIKS 110

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 55.3 bits (133), Expect = 2e-10
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLC 292
                C  C ++      +     CNH FH  C+S W++ N  CPLC
Sbjct: 24  QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 53.7 bits (129), Expect = 7e-10
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCK 293
           +S S+           C IC   + +        C H+F   C  +  R    C +C 
Sbjct: 2   SSGSSGGSEEEEIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 237 SNSTDELALHPED-SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCK 293
           S+ +     +P+    C IC S  + G    T  C    H  C++K+ +      CP C 
Sbjct: 2   SSGSSGRETYPDAVKICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCN 59

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302
           C IC    +D        C H F   CI +    +  CP C   + +   L
Sbjct: 18  CSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 51.8 bits (123), Expect = 9e-09
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 15/60 (25%)

Query: 248 EDSDCCICLSQYV---------------DGAELYTLPCNHHFHCGCISKWLRINATCPLC 292
              +C IC +  +               +   +    CNH FH  CIS+WL+    CPL 
Sbjct: 47  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 22/77 (28%)

Query: 246 HPEDSDCCICLSQYVDGAELYT---------------LPCNHHFHCGCISKWLR-----I 285
              + DC IC+ +    +                     C+H FH  C+           
Sbjct: 22  VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG 81

Query: 286 NATCPLCK--YNIRRGD 300
           +  CP CK  Y  + G 
Sbjct: 82  SLQCPSCKTIYGEKTGT 98

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLC 292
                +C    +             CNH FH  CIS+WL+    CPL 
Sbjct: 48  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 95

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 225 QDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR 284
           +       +++         +      C IC     D       PC H     C++ W  
Sbjct: 308 EPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK---IEPCGHLMCTSCLTSWQE 364

Query: 285 I-NATCPLCKYNIRRGDTLV 303
                CP C+  I+  + +V
Sbjct: 365 SEGQGCPFCRCEIKGTEPIV 384

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 241 DELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCK 293
             +    E   C IC+ +  D        C+      CI +WL    A CP C+
Sbjct: 14  QSVESIAEVFRCFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCR 65

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL 302
           C +C   ++D      + C H F   CI ++L  +  CP+C   + +   L
Sbjct: 18  CVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPL 66

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 219 SNNSEKQDVFGTETEMSNSNSTDELALHP--EDSDCCICLSQYVDGAELYTLPCNHHFHC 276
           SN     +V  +  +   S S  +L L    E   C  C           T  C H+   
Sbjct: 20  SNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPI---TTVCQHNVCK 76

Query: 277 GCISKWLRINA-TCPLCKYNIRRGDTL 302
            C+ +  R    +CP C+Y++ R   +
Sbjct: 77  DCLDRSFRAQVFSCPACRYDLGRSYAM 103

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 248 EDSDCCICLSQYVDGAELY----TLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298
               C IC+  Y +  +      +  C H F   C+   L+   TCP C+  I  
Sbjct: 6   GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 237 SNSTDELALHPEDSDCC-ICLSQYVDGAELYTLPCN-----HHFHCGCISKWL--RINAT 288
           S+ +   ++ P   D C IC  +  D + L T PC+     H  H  C+ +W+       
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRC 60

Query: 289 CPLCKY 294
           C LCKY
Sbjct: 61  CELCKY 66

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.9 bits (111), Expect = 8e-07
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRRGDTL 302
           +   C  C           T  C H+    C+ +  +    +CP C++++ +   +
Sbjct: 77  QSFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM 129

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCK 293
            +  C IC+   V+     TLPCNH     C    + + +  CP C+
Sbjct: 14  SECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCR 57

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
           C IC   +     +    C+H++   CI K+L     CP C   +   D
Sbjct: 25  CGICFEYFNIAMII--PQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHC-GCISKWLRINATCPLCKYNIRR 298
               C +C  +  DG  +      H   C  C  +  +  A+CP+CK  I+ 
Sbjct: 6   LLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 4/57 (7%)

Query: 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDTL 302
            +   C  C              C H F   C++  L   +  C  C+ +I +    
Sbjct: 13  EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD 300
           C  C +   +   L    C H F   C+S    I   CP+C       D
Sbjct: 25  CSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCYTPAWIQD 69

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---RINATCPLCKYNIRRGD 300
           +  +C ICL    +     +  C+H F   C+ K L   +  + CPLCK +I +  
Sbjct: 20  KILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---RINATCPLCKYNIRRGD 300
           E+  C ICL          T+ C H+F   CI++          CPLCK ++R+  
Sbjct: 19  EEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--NATCPLCK 293
            C IC S  + G    T  C    H  C++K+ +      CP C 
Sbjct: 182 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCN 224

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 239 STDELALH-PEDSD----CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLC 292
           ST  LA+  P        C IC     D        C H F   CI + L++  + CP C
Sbjct: 8   STKLLAVDFPAHFVKSISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSC 64

Query: 293 KYNIRRGD 300
           +Y     D
Sbjct: 65  RYPCFPTD 72

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDTL 302
           C ICL    +   + T  C H F   CI   LR  N  CP C+  +    +L
Sbjct: 57  CPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHC-GCISKWLRINATCPLCKYNIRR 298
               C IC  +  +G  +      H   C  C  K  + N  CP+C+  I+ 
Sbjct: 7   AIEPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN------ATCPLCKYNIRRGD 300
           E+  C ICL    +     +  CNH F   CI+     N        CP+C+     G+
Sbjct: 18  EEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 237 SNSTDELALHPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI--NATCPLCK 293
           S S+ E    P++  C IC     D      +P C + +   CI   L      TCP C 
Sbjct: 3   SGSSGEDDPIPDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCH 59

Query: 294 YNIRRGDTL 302
            N    D L
Sbjct: 60  QNDVSPDAL 68

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 13/61 (21%)

Query: 247 PEDSDCC-ICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRI--NATCPLCK--YNI 296
            ED   C IC  +   G E +   C       + H  C+S WL I  N  C +C   YN 
Sbjct: 3   DEDVPVCWICNEE--LGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

Query: 297 R 297
           R
Sbjct: 60  R 60

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 248 EDSDCCICLS-QYVD-GAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRGD 300
           +D  C  C + +Y +   +L    C H     C+     R    CP C   +R+ +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 234 MSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKW---LRINATCP 290
             +S + + L     ++ C +CL    +      + C H+F   CI++W   L  +  CP
Sbjct: 3   SGSSGALENLQ---VEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCP 56

Query: 291 LC 292
           +C
Sbjct: 57  VC 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.73
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.7
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.61
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.61
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.6
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.6
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.54
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.52
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.49
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.49
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.47
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.47
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.47
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.47
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.45
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.43
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.43
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.41
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.4
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.38
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.37
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.36
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.36
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.34
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.28
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.26
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.26
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.25
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.25
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.24
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.24
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.24
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.23
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.22
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.22
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.2
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.19
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.18
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.14
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.13
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.03
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.03
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.02
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.0
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.97
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.96
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.95
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.95
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.95
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.94
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.89
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.88
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.88
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.85
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.84
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.83
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.78
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.73
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.67
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.66
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.56
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.49
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.49
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.38
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.33
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.23
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.85
3nw0_A	238	Non-structural maintenance of chromosomes element	97.77
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.01
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.92
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.24
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	92.05
1we9_A	64	PHD finger family protein; structural genomics, PH	91.57
2l43_A	88	N-teminal domain from histone H3.3, linker, PHD1 f	89.83
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	89.55
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	89.09
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.24
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	87.64
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	87.35
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	86.72
2e6r_A	92	Jumonji/ARID domain-containing protein 1D; PHD dom	86.53
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	86.51
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	85.91
1wem_A	76	Death associated transcription factor 1; structura	85.06
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	83.68
2kgg_A	52	Histone demethylase jarid1A; PHD finger, histone m	83.53
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	83.35
2vpb_A	65	Hpygo1, pygopus homolog 1; gene regulation, WNT si	82.96
1wee_A	72	PHD finger family protein; structural genomics, PH	82.03
1weu_A	91	Inhibitor of growth family, member 4; structural g	81.47
2lv9_A	98	Histone-lysine N-methyltransferase MLL5; zinc fing	80.69
1wen_A	71	Inhibitor of growth family, member 4; ING1-like pr	80.23

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=130.38  Aligned_cols=78  Identities=33%  Similarity=0.660  Sum_probs=66.1

Q ss_pred             hccCCCCHHHHhcCCcceeccccccccCCCCccccccCCcccccCCCCcccccCCCCCCcceeecccccCCCceEEeCCC
Q 022069          192 ATRQGASADDIRNLPKYRYRLASHLRASNNSEKQDVFGTETEMSNSNSTDELALHPEDSDCCICLSQYVDGAELYTLPCN  271 (303)
Q Consensus       192 ~~~~g~s~~~i~~Lp~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ed~~C~ICL~~y~~~~~lr~LpC~  271 (303)
                      ...+|++++.+++||...+....                             ....++.+|+||+++|.+++.++.+||+
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~-----------------------------~~~~~~~~C~IC~~~~~~~~~~~~l~C~   62 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDH-----------------------------GAVGQEMCCPICCSEYVKGDVATELPCH   62 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTC-----------------------------SSSSSCSEETTTTEECCTTCEEEEETTT
T ss_pred             cCCCCCCHHHHHhCCCeeecccc-----------------------------cccCCCCCCcccChhhcCCCcEEecCCC
Confidence            45689999999999988876110                             0123567899999999999999999999


Q ss_pred             CccChhhHHHHHhcCCCCcccccCccC
Q 022069          272 HHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       272 H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      |.||..||++|++.+.+||+||+++..
T Consensus        63 H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           63 HYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             EEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             ChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=5.3e-18  Score=124.00  Aligned_cols=53  Identities=38%  Similarity=0.986  Sum_probs=49.4

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ++.+|+||+++|.+++.++.+||+|.||..||++|++.+.+||+||+++.+.+
T Consensus        22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~   74 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS   74 (75)
T ss_dssp             SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred             CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence            56789999999999999999999999999999999999999999999988754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.9e-16  Score=113.06  Aligned_cols=56  Identities=32%  Similarity=0.772  Sum_probs=50.2

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..++.+|+||++.|.+++.++.+||+|.||..||++|++.+.+||+||+++..-..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            34567899999999999999999999999999999999999999999999876443

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.61  E-value=2.7e-16  Score=107.72  Aligned_cols=50  Identities=40%  Similarity=1.061  Sum_probs=46.6

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ++.+|+||+++|.+++..+.+| |+|.||.+||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            5678999999999999999998 9999999999999999999999999864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.60  E-value=4.7e-16  Score=114.33  Aligned_cols=56  Identities=34%  Similarity=0.853  Sum_probs=50.9

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+++...+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            34567899999999999999999999999999999999999999999999987654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.60  E-value=5.8e-16  Score=111.12  Aligned_cols=54  Identities=37%  Similarity=0.933  Sum_probs=48.9

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      ..++.+|+||++.|.+++.++.+||+|.||..||.+|++.+.+||+||+++...
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            345678999999999988999999999999999999999999999999988653

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-15  Score=113.07  Aligned_cols=52  Identities=37%  Similarity=0.780  Sum_probs=42.3

Q ss_pred             CCCcceeecccccC-----------CCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVD-----------GAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~-----------~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      ++.+|+||++++++           ++.++.+| |+|.||.+||++|++.+.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            45667777777754           45566776 999999999999999999999999987643

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.52  E-value=6e-15  Score=100.84  Aligned_cols=50  Identities=32%  Similarity=0.646  Sum_probs=44.4

Q ss_pred             CCCcceeecccccCC-CceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDG-AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~-~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ++.+|+||++++.++ +..+.+||+|.||.+||++|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            567899999999664 45788999999999999999999999999999875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.49  E-value=6.8e-15  Score=105.86  Aligned_cols=56  Identities=25%  Similarity=0.580  Sum_probs=48.6

Q ss_pred             CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..++.+|+||++.+.+.    +....++|||.||..||++|++.+.+||+||+++..++.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   66 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence            34677899999999763    566889999999999999999999999999999987664

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-14  Score=103.61  Aligned_cols=53  Identities=26%  Similarity=0.633  Sum_probs=46.1

Q ss_pred             CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ..++.+|+||++.|.+.    +.+..++|+|.||..||++|++.+.+||+||+++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34677899999999764    445789999999999999999999999999998865

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.47  E-value=2.5e-14  Score=112.68  Aligned_cols=52  Identities=25%  Similarity=0.514  Sum_probs=43.3

Q ss_pred             CCCcceeecccccCCC---------------ceEEeCCCCccChhhHHHHH-----hcCCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGA---------------ELYTLPCNHHFHCGCISKWL-----RINATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~---------------~lr~LpC~H~FH~~CI~~WL-----~~~~tCPlCR~~I~~~  299 (303)
                      .+.+|+||+++|.++.               .++.+||+|.||..||++|+     +.+.+||+||+.+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            4568999999997653               34588999999999999999     4577999999987543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.47  E-value=2.4e-14  Score=111.58  Aligned_cols=50  Identities=34%  Similarity=0.715  Sum_probs=43.8

Q ss_pred             CCCcceeecccccCC---------------CceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDG---------------AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~---------------~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ++..|+||++.|++.               ..++.+||+|.||..||++||+.+.+||+||++..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            567899999999865               13678899999999999999999999999999853

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.2e-14  Score=105.27  Aligned_cols=54  Identities=30%  Similarity=0.741  Sum_probs=45.7

Q ss_pred             CCCCCcceeecccccCCCceEEeCCC-----CccChhhHHHHHhcC--CCCcccccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCN-----HHFHCGCISKWLRIN--ATCPLCKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~-----H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~  300 (303)
                      ..++.+|.||+++|++++.+ .+||+     |.||.+||++|++.+  .+||+||+++..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            34567899999999888776 69996     999999999999876  49999999986544

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.47  E-value=1.3e-14  Score=102.16  Aligned_cols=54  Identities=26%  Similarity=0.592  Sum_probs=47.5

Q ss_pred             CCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          248 EDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ++.+|+||++.+.+.    +....++|||.||.+|+.+|++.+.+||+||+++..++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   59 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   59 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence            567899999999763    456889999999999999999999999999999987664

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.7e-14  Score=102.56  Aligned_cols=51  Identities=33%  Similarity=0.998  Sum_probs=45.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      .++.+|+||++.+.+    ..+||+|.||..||.+|++.+.+||+||+++...+.
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            456789999999877    789999999999999999999999999999987654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.7e-14  Score=103.09  Aligned_cols=50  Identities=30%  Similarity=0.680  Sum_probs=44.3

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      .++.+|+||++.+.+.   ..+||+|.||..||++|++.+.+||+||+++..+
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            4567899999998765   7789999999999999999999999999998654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-13  Score=99.99  Aligned_cols=53  Identities=26%  Similarity=0.599  Sum_probs=46.0

Q ss_pred             CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDTL  302 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i  302 (303)
                      .++..|+||++.+.+.   ..+ +|+|.||..||.+|++.+.+||+||+++..++.+
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           13 TPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             CCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            4567899999999875   454 9999999999999999999999999999877654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.41  E-value=1.2e-13  Score=98.47  Aligned_cols=50  Identities=40%  Similarity=0.877  Sum_probs=43.7

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      .++.+|+||++.+.++  ...+||||.||..|+.+|++.+.+||+||+++..
T Consensus         3 ~~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            3 TVAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            3567899999998753  5789999999999999999999999999998753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-13  Score=99.16  Aligned_cols=54  Identities=31%  Similarity=0.623  Sum_probs=45.7

Q ss_pred             CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC--CCCcccccCccCCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIRRGDTL  302 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~~~i  302 (303)
                      ..++..|+||++.+.+.   ..+| |+|.||..||.+|++.+  .+||+||+++...+.+
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL   68 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred             CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence            34567899999999876   6799 99999999999999876  6899999987765544

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.4e-13  Score=100.86  Aligned_cols=55  Identities=25%  Similarity=0.541  Sum_probs=47.2

Q ss_pred             CCCCCcceeecccccCCCc-eEEeCCCCccChhhHHHHHhcC---CCCcccccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~  300 (303)
                      ..++.+|+||++.|.+++. .+.+||||.||..|+.+|++.+   .+||+||+++..++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            3456789999999998764 6889999999999999999876   79999999886654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=3.3e-13  Score=95.80  Aligned_cols=52  Identities=19%  Similarity=0.478  Sum_probs=44.7

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHH-hcCCCCcccccCccCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL-RINATCPLCKYNIRRGDT  301 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL-~~~~tCPlCR~~I~~~~~  301 (303)
                      .++..|+||++.+.+.   ..++|||.||..||.+|+ +.+.+||+||+++..++.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            4567899999999876   347999999999999999 456799999999987764

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.36  E-value=6.7e-14  Score=110.75  Aligned_cols=50  Identities=34%  Similarity=0.712  Sum_probs=1.2

Q ss_pred             CCCcceeecccccCC-------------C--ceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDG-------------A--ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~-------------~--~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      +++.|+||+++|++.             +  .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            567899999999762             2  2344689999999999999999999999999854

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=5.5e-13  Score=96.34  Aligned_cols=53  Identities=32%  Similarity=0.621  Sum_probs=45.0

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlCR~~I~~~~~  301 (303)
                      ..++..|+||++.+.+.   ..+||||.||..||.+|++   .+.+||+||+++..++.
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            34677899999998864   6779999999999999997   45689999999987653

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=5.9e-13  Score=98.39  Aligned_cols=49  Identities=20%  Similarity=0.489  Sum_probs=43.3

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ..++..|+||++.+.+.   ..+||+|.||..||.+|++.+.+||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34567899999999775   57999999999999999999999999999875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=4.3e-12  Score=93.92  Aligned_cols=52  Identities=29%  Similarity=0.646  Sum_probs=45.1

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc------CCCCcccccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI------NATCPLCKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~~  300 (303)
                      ..++.+|+||++.+.+.   ..+||+|.||..|+.+|++.      +..||+||+++..++
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN   73 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred             CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence            34567899999999876   57899999999999999987      678999999987654

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.26  E-value=1.4e-12  Score=104.69  Aligned_cols=54  Identities=26%  Similarity=0.619  Sum_probs=47.4

Q ss_pred             CCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      .++.+|+||++.|.++    +....++|||.||.+||++|++.+.+||+||+++..++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            4567899999999764    56689999999999999999999999999999987654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.26  E-value=9.1e-13  Score=107.38  Aligned_cols=48  Identities=31%  Similarity=0.950  Sum_probs=42.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++..|+||++.|.++   ..+||||.||..||.+|++.+.+||+||+++..
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            345799999999775   789999999999999999999999999999864

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=4.5e-12  Score=92.01  Aligned_cols=50  Identities=26%  Similarity=0.597  Sum_probs=42.5

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPlCR~~I~~~  299 (303)
                      ...+|+||.+.+..++..  ..|+|.||..||++||+.+  .+||+||++...+
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            457899999999877433  3799999999999999987  8999999987644

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5e-12  Score=93.59  Aligned_cols=53  Identities=25%  Similarity=0.659  Sum_probs=45.3

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc------CCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI------NATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~------~~tCPlCR~~I~~~~~  301 (303)
                      ..++.+|+||++.+.+.   ..+||+|.||..|+.+|++.      +.+||+||..+..++.
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~   74 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI   74 (85)
T ss_dssp             CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred             ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence            34567899999999876   56799999999999999987      7899999999876543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.24  E-value=3.3e-12  Score=93.48  Aligned_cols=51  Identities=25%  Similarity=0.476  Sum_probs=44.9

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  300 (303)
                      +++..|+||++.+.++   ..+||||.||..||.+|++. +.+||+||+++..++
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~   57 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence            4677899999999876   67899999999999999987 789999999987654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=8.1e-12  Score=87.66  Aligned_cols=44  Identities=34%  Similarity=0.656  Sum_probs=38.3

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh---cCCCCccc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR---INATCPLC  292 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~---~~~tCPlC  292 (303)
                      ..++..|+||++.+.+.   ..+||||.||..||.+|++   .+.+||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34677899999999876   6789999999999999998   45689998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.24  E-value=1.3e-12  Score=95.81  Aligned_cols=51  Identities=25%  Similarity=0.612  Sum_probs=43.9

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-------CCCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-------NATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-------~~tCPlCR~~I~~~~  300 (303)
                      .++.+|+||++.|.+.   ..+||||.||..||.+|++.       +.+||+||.++..++
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            4577899999999876   45899999999999999987       678999999987643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.23  E-value=1.2e-12  Score=100.75  Aligned_cols=50  Identities=28%  Similarity=0.681  Sum_probs=43.7

Q ss_pred             CCCcceeecccccCCCceEE-eCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYT-LPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~-LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~  300 (303)
                      ++..|+||++.+.+.   .. ++|||.||..||.+|++.+ .+||+||+++..++
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            567899999999864   55 8999999999999999887 69999999987654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.22  E-value=5.4e-12  Score=89.19  Aligned_cols=54  Identities=20%  Similarity=0.522  Sum_probs=44.0

Q ss_pred             CCCcceeecc-cccCCCce-EEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069          248 EDSDCCICLS-QYVDGAEL-YTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~-~y~~~~~l-r~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~  301 (303)
                      ++..|+||++ .+.++... ..++|||.||..||++|+.. +.+||+||+++.+++.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   58 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence            4578999999 77776543 46899999999999999754 4689999999987654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=6.4e-12  Score=86.45  Aligned_cols=44  Identities=27%  Similarity=0.871  Sum_probs=37.6

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHH---hcCCCCccc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---RINATCPLC  292 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL---~~~~tCPlC  292 (303)
                      ..++..|+||++.+.+.   ..+||+|.||..||.+|+   +.+.+||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999999886   568999999999999995   456799998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.20  E-value=4.7e-12  Score=101.49  Aligned_cols=56  Identities=25%  Similarity=0.578  Sum_probs=48.2

Q ss_pred             CCCCCcceeecccccCC----CceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDG----AELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~----~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      .+++.+|+||++.+++.    .....++|||.||..||++|++.+.+||+||+++.+++.
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~  128 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY  128 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence            34667899999999763    445788999999999999999999999999999987653

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.19  E-value=3.9e-12  Score=97.57  Aligned_cols=50  Identities=26%  Similarity=0.675  Sum_probs=43.3

Q ss_pred             CCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ++..|+||++.|.++   ..+ ||||.||..||.+|++.+.+||+||+++..++
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   71 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD   71 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence            457899999999874   455 89999999999999999999999999887543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=92.26  Aligned_cols=50  Identities=30%  Similarity=0.622  Sum_probs=42.9

Q ss_pred             CCCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC--CCCcccccCccC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN--ATCPLCKYNIRR  298 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~--~tCPlCR~~I~~  298 (303)
                      ..++..|+||++.|.++   ..+| |||.||..||.+|++.+  .+||+||.++..
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   62 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred             CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence            34678899999999876   6899 99999999999999754  589999999743

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.14  E-value=1.5e-11  Score=95.84  Aligned_cols=50  Identities=24%  Similarity=0.703  Sum_probs=43.2

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~  299 (303)
                      ++..|+||++.+.+.  +..+||||.||..||.+|++.+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            567899999999764  33349999999999999999999999999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.13  E-value=1.3e-11  Score=98.49  Aligned_cols=48  Identities=27%  Similarity=0.707  Sum_probs=42.2

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~  298 (303)
                      ++..|+||++.+.++   ..+||||.||..||.+|++.+. +||+||+++..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            456799999999875   6789999999999999998554 99999999876

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.09  E-value=3.7e-11  Score=93.79  Aligned_cols=51  Identities=31%  Similarity=0.637  Sum_probs=43.1

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC---CCcccccCccCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA---TCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~---tCPlCR~~I~~~~~  301 (303)
                      ++..|+||++.+.+.   ..+||||.||..||.+|++.+.   +||+||.++..++.
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            346799999999876   4589999999999999998764   89999999876553

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.06  E-value=3.7e-11  Score=95.12  Aligned_cols=51  Identities=27%  Similarity=0.579  Sum_probs=44.0

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~~  300 (303)
                      .++..|+||++.+.++   ..+||||.||..||.+|++.+. +||+||.++..++
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence            3567899999999876   6789999999999999998765 9999999987654

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.05  E-value=4.9e-11  Score=99.87  Aligned_cols=50  Identities=32%  Similarity=0.650  Sum_probs=42.2

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  299 (303)
                      ++..|+||++.|.+.  +..+||||.||..||++|++. +.+||+||.++...
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            456899999999874  444599999999999999987 78999999998543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.03  E-value=3.8e-11  Score=94.62  Aligned_cols=50  Identities=30%  Similarity=0.651  Sum_probs=43.5

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  300 (303)
                      ++..|+||++.+.++   ..+||||.||..||.+|++. +.+||+||+++..++
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            356799999998775   56899999999999999987 789999999987654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.03  E-value=2.3e-11  Score=95.79  Aligned_cols=48  Identities=29%  Similarity=0.749  Sum_probs=42.0

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~  297 (303)
                      .++..|+||++.+.+.   ..+||||.||..||.+|++. +.+||+||+++.
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3467899999999876   67899999999999999976 678999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.02  E-value=7.4e-11  Score=97.47  Aligned_cols=49  Identities=18%  Similarity=0.542  Sum_probs=43.0

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~~  299 (303)
                      ++..|+||++.+.++   ..+||||.||..||.+|++.+. +||+||.++...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            456899999999876   5689999999999999998764 899999998876

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.00  E-value=2.2e-10  Score=84.16  Aligned_cols=54  Identities=15%  Similarity=0.359  Sum_probs=42.1

Q ss_pred             CCCCcceeecccccCCCceEEe--CCCCccChhhHHHHHh-cCCCCcccccCccCCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTL--PCNHHFHCGCISKWLR-INATCPLCKYNIRRGDT  301 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~~  301 (303)
                      .++.+|+||++.+...+. +.+  +|||.||..|+.++.+ .+..||.||+++..++.
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            467789999998864332 344  5999999999999874 35789999999876543

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.97  E-value=1.2e-10  Score=82.29  Aligned_cols=47  Identities=26%  Similarity=0.558  Sum_probs=40.1

Q ss_pred             CCCcceeecccccCCCceEEe--CCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTL--PCNHH-FHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ++.+|.||++...+.   ..+  ||||. |+.+|+.+|.+.+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            456799999986554   444  99999 799999999999999999999885

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=1.4e-10  Score=79.64  Aligned_cols=47  Identities=26%  Similarity=0.564  Sum_probs=40.2

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ++..|+||++.|.+.   +.|||+|.||..|+.+|   +.+||+||+++...+
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence            567799999999876   67999999999999884   678999999986543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.95  E-value=2.1e-10  Score=107.84  Aligned_cols=50  Identities=26%  Similarity=0.696  Sum_probs=43.5

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHh-cCCCCcccccCccCCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR-INATCPLCKYNIRRGDT  301 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~-~~~tCPlCR~~I~~~~~  301 (303)
                      ..+|+||++.+.+   ...+||||.||..|+.+|++ .+.+||+||+++...+.
T Consensus       332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred             CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence            4689999999865   47899999999999999998 78899999999876543

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.95  E-value=6.8e-10  Score=85.09  Aligned_cols=53  Identities=15%  Similarity=0.108  Sum_probs=47.4

Q ss_pred             CCCCCcceeecccccCCCceEEeCCC-CccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCN-HHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      .+++..|+||++-+.++   ..+||| |.|+..||.+|++.+.+||+||.++..++.
T Consensus        19 ~p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L   72 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             CcHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence            45678899999999987   789999 999999999999989999999999876654

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.95  E-value=3.7e-10  Score=84.28  Aligned_cols=52  Identities=15%  Similarity=0.139  Sum_probs=46.6

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      .+++..|+||++-+.++   ..+||||.|...||.+|++.+.+||.||.++..++
T Consensus        11 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   62 (85)
T 2kr4_A           11 APDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM   62 (85)
T ss_dssp             CCTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CchheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence            35678899999999987   78999999999999999998999999999887654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.94  E-value=5.3e-10  Score=86.03  Aligned_cols=54  Identities=15%  Similarity=0.117  Sum_probs=47.9

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..+++..|+||++-+.++   ..+||||.|+..||.+|+..+.+||.||.++..++.
T Consensus        25 ~~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L   78 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML   78 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred             cCcHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence            345778899999999987   789999999999999999989999999999877653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.89  E-value=3.1e-10  Score=92.71  Aligned_cols=50  Identities=16%  Similarity=0.374  Sum_probs=42.8

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC-CCcccccCccC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA-TCPLCKYNIRR  298 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~-tCPlCR~~I~~  298 (303)
                      ..++..|+||++.+.++   ..++|||.||..||.+|++.+. +||+||.++..
T Consensus        28 l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            34567899999999887   6689999999999999998665 89999998643

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.88  E-value=3.4e-10  Score=79.60  Aligned_cols=47  Identities=26%  Similarity=0.562  Sum_probs=39.8

Q ss_pred             CCCcceeecccccCCCceEEe--CCCCc-cChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTL--PCNHH-FHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~L--pC~H~-FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      .+.+|.||++...+.   ..+  ||||. |+.+|+.+|.+.+..||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            356799999976553   344  99998 999999999988899999999985

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.88  E-value=3.6e-10  Score=89.28  Aligned_cols=49  Identities=24%  Similarity=0.538  Sum_probs=42.2

Q ss_pred             CCCCcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      .++..|+||++.|.+.   ..+ ||||.||..||.+|++  ..||+||.++...+
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~   69 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD   69 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred             hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence            3567899999999876   566 8999999999999988  88999999986544

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.85  E-value=1.3e-10  Score=84.43  Aligned_cols=44  Identities=27%  Similarity=0.596  Sum_probs=38.3

Q ss_pred             CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++..|+||++.+.+.   ..+||||. |+..|+.+|    .+||+||+++..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            456899999987664   78899999 999999999    899999998864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.84  E-value=1.4e-09  Score=75.70  Aligned_cols=47  Identities=32%  Similarity=0.753  Sum_probs=37.5

Q ss_pred             CCCcceeecccccCCCceEEeCCC--C---ccChhhHHHHHhc--CCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCN--H---HFHCGCISKWLRI--NATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~--H---~FH~~CI~~WL~~--~~tCPlCR~~I~  297 (303)
                      +...|.||+++.  ++++ .+||.  |   .||.+|+++|++.  +.+||+||++..
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            557899999983  3344 68965  4   9999999999965  679999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.83  E-value=5.2e-10  Score=102.62  Aligned_cols=51  Identities=29%  Similarity=0.793  Sum_probs=40.8

Q ss_pred             CCCCcceeecccccCCCceE-----EeCCCCccChhhHHHHHhcC-----------CCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELY-----TLPCNHHFHCGCISKWLRIN-----------ATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr-----~LpC~H~FH~~CI~~WL~~~-----------~tCPlCR~~I~  297 (303)
                      ....+|+||++.+.++.++-     ..+|+|.||..|+.+||+..           .+||.||++|.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            45678999999998844332     24699999999999999753           47999999875

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=5.6e-09  Score=74.49  Aligned_cols=47  Identities=28%  Similarity=0.764  Sum_probs=38.8

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ...++..|.||++...+   ...+||+|. |+..|+.+    ...||+||++|..
T Consensus        11 ~~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             SCCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            34457789999987654   588999999 99999984    5799999998864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.73  E-value=2.4e-09  Score=89.83  Aligned_cols=51  Identities=27%  Similarity=0.570  Sum_probs=43.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~  300 (303)
                      .++..|+||++.+.++   ..++|||.|+..||.+|++.+ .+||+||.++..++
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   67 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ   67 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence            4567899999999876   668999999999999999765 49999999987654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=1.9e-09  Score=78.27  Aligned_cols=46  Identities=26%  Similarity=0.572  Sum_probs=37.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ++.+|+||++.+.+.   ..+||||. |+..|+.+    ...||+||+++...-
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence            456799999987664   67899999 99999965    478999999987643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.67  E-value=8.2e-09  Score=92.63  Aligned_cols=53  Identities=11%  Similarity=0.070  Sum_probs=45.3

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD  300 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~  300 (303)
                      ..+++..|+||++-+.++   ..+||||.|+..||.+|++.+ .+||+||.++..++
T Consensus       204 ~~~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~  257 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ  257 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CCCcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence            345678899999999987   789999999999999999864 45999999987554

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=5.2e-09  Score=79.40  Aligned_cols=50  Identities=22%  Similarity=0.460  Sum_probs=41.6

Q ss_pred             CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcC------CCCcc--cccC-ccCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRIN------ATCPL--CKYN-IRRG  299 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~------~tCPl--CR~~-I~~~  299 (303)
                      .++..|+||++-|.++   ..+| |||.|+..||.+|++.+      .+||+  |+.. +..+
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence            4667899999999986   6786 99999999999999764      48999  9866 5443

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.56  E-value=1e-08  Score=77.68  Aligned_cols=51  Identities=22%  Similarity=0.590  Sum_probs=41.7

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc--------CCCCcc--cccC--ccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--------NATCPL--CKYN--IRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~--------~~tCPl--CR~~--I~~  298 (303)
                      +..+|+||++++.+++.++..+|+|.|+.+|+.++++.        ..+||.  ||..  +.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~   66 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE   66 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence            45689999999987766666689999999999999964        237999  9987  543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.49  E-value=1.6e-08  Score=74.18  Aligned_cols=44  Identities=23%  Similarity=0.685  Sum_probs=36.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      ++..|.||++...+   ...+||||. |+..|+.+|    ..||+||+++..
T Consensus        17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            34679999988655   478999999 999999987    499999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.49  E-value=4.1e-08  Score=83.02  Aligned_cols=52  Identities=12%  Similarity=0.093  Sum_probs=44.8

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~  300 (303)
                      .+++..|+||++-+.++   ..+||||.|...||.+|+..+ .+||.||.++...+
T Consensus       103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~  155 (179)
T 2f42_A          103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ  155 (179)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence            45678899999999986   778999999999999999874 47999999887654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.38  E-value=6.2e-08  Score=67.51  Aligned_cols=49  Identities=8%  Similarity=0.073  Sum_probs=43.6

Q ss_pred             CcceeecccccCCCceEEe-CCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          250 SDCCICLSQYVDGAELYTL-PCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~L-pC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..|+||++-+++.   ..+ +|||.|-..||.+|++.+.+||+++.++..++.
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L   53 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   53 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence            5699999999976   667 899999999999999999999999999877664

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.33  E-value=8.7e-08  Score=89.24  Aligned_cols=45  Identities=27%  Similarity=0.708  Sum_probs=39.1

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCc-cChhhHHHHHhcCCCCcccccCccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHH-FHCGCISKWLRINATCPLCKYNIRR  298 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~-FH~~CI~~WL~~~~tCPlCR~~I~~  298 (303)
                      .++..|+||++.+.+.   ..+||||. ||..|+.+|    ..||+||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4567899999998764   77899999 999999998    789999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.23  E-value=3.6e-07  Score=81.23  Aligned_cols=53  Identities=26%  Similarity=0.460  Sum_probs=43.6

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--CCCcc--cccCccCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--ATCPL--CKYNIRRGD  300 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--~tCPl--CR~~I~~~~  300 (303)
                      ...+..|+||++.|.++  ++.+.|||.|+..||.+|++.+  .+||.  ||+.+..++
T Consensus       178 ~~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d  234 (267)
T 3htk_C          178 GKIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD  234 (267)
T ss_dssp             SBCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred             CceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence            34567899999999776  5556899999999999999765  47999  999876554

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.85  E-value=6.4e-06  Score=62.21  Aligned_cols=45  Identities=24%  Similarity=0.505  Sum_probs=35.4

Q ss_pred             ceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccC
Q 022069          252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRR  298 (303)
Q Consensus       252 C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~  298 (303)
                      |.+|--.+.  ...|..||+|+|+.+|+..|.++ ..+||.|+.++..
T Consensus         4 C~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            555544433  34699999999999999999854 6899999998853

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.77  E-value=1.8e-05  Score=69.89  Aligned_cols=49  Identities=29%  Similarity=0.637  Sum_probs=40.7

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCC--CCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINA--TCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~--tCPlCR~~I~~~  299 (303)
                      ...+|.||-+-...+   ...+ |+|.||..|+++|++.+.  +||.|+.+...+
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            467899999998877   3444 999999999999998754  999999987654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.92  E-value=0.017  Score=40.35  Aligned_cols=47  Identities=19%  Similarity=0.393  Sum_probs=33.8

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI  296 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I  296 (303)
                      ..+..|.||-+   .++.+.--.|...||..|++..+....    .||.|++.-
T Consensus        10 ~~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           10 APGARCGVCGD---GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CTTCCCTTTSC---CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCcCCCCC---CCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            34577999964   244443334999999999998886543    699997654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.24  E-value=0.019  Score=43.00  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHH-HH
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISK-WL  283 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~-WL  283 (303)
                      ++..|.||.++|..+....-++|+|.|+..|+.. |-
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4577999998765554556699999999999998 54

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=92.05  E-value=0.11  Score=37.64  Aligned_cols=38  Identities=21%  Similarity=0.473  Sum_probs=25.2

Q ss_pred             cCCCCCCcceeecccccCCCceEEeCCCCccChhhHHHH
Q 022069          244 ALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKW  282 (303)
Q Consensus       244 ~~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~W  282 (303)
                      .....|..|.||- .+..++....=-|+-+||..|+++-
T Consensus        10 e~~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           10 EPVVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCCCCCcccCccc-cccccceeccccccccccHhhcccc
Confidence            3445778899983 3444432222227899999999995

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=91.57  E-value=0.052  Score=37.28  Aligned_cols=49  Identities=20%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYN  295 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~  295 (303)
                      .++..|++|-..|.++.....-. |...||..|+.--..     ..-.||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            35677999999987655444444 999999999875432     23469999754

>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}

Probab=89.83  E-value=0.1  Score=38.39  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             CCCCCCcceeecccc-cCCCceEEeC-CCCccChhhHHHHHh--cCCCCcccccCccC
Q 022069          245 LHPEDSDCCICLSQY-VDGAELYTLP-CNHHFHCGCISKWLR--INATCPLCKYNIRR  298 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y-~~~~~lr~Lp-C~H~FH~~CI~~WL~--~~~tCPlCR~~I~~  298 (303)
                      ...++..|.||...- .+++.+..-. |.-.||..|+..=+.  ..=.||.|+.....
T Consensus        21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~   78 (88)
T 2l43_A           21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR   78 (88)
T ss_dssp             CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred             cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence            345678899998764 2333444444 889999999985321  12259999765443

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=89.55  E-value=0.12  Score=33.69  Aligned_cols=44  Identities=27%  Similarity=0.521  Sum_probs=29.6

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKY  294 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~  294 (303)
                      .|.+|...-++++.+.--.|...||..|++.=+...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            588887765444444444499999999997544332    24999965

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=89.09  E-value=0.07  Score=37.87  Aligned_cols=51  Identities=20%  Similarity=0.423  Sum_probs=34.7

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhc----CCCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRI----NATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~----~~tCPlCR~~I~~~  299 (303)
                      ++..|.+|-.... ++.+..-. |...||..|+..-...    .-.||.|+..+.+.
T Consensus        17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred             CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence            3455999987764 33333443 9999999999865432    23599998876554

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.24  E-value=0.17  Score=34.39  Aligned_cols=46  Identities=20%  Similarity=0.544  Sum_probs=31.7

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYN  295 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~  295 (303)
                      .++..|.+|-..   ++.+.--.|...||..|++.=+...    =.||.|++.
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            356779999763   4333333488999999999755332    259999753

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=87.64  E-value=0.12  Score=35.28  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=33.1

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~  299 (303)
                      ++..|.+|-..   ++.+.-=.|...||..|++.=+...    =.||.|+....++
T Consensus         8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k~   60 (61)
T 1mm2_A            8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG   60 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred             CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhcC
Confidence            45679999752   4333333488999999998655432    2599998765554

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=87.35  E-value=0.048  Score=37.05  Aligned_cols=51  Identities=22%  Similarity=0.574  Sum_probs=34.9

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCccCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~~~  301 (303)
                      ++..|.+|-..   ++.+.--.|...||..|++.=+...    =.||.|+....+++.
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~~~   58 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKKEE   58 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHTTT
T ss_pred             CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhchhc
Confidence            46779999864   4444434499999999999655432    259999776655443

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.72  E-value=0.083  Score=35.32  Aligned_cols=45  Identities=24%  Similarity=0.628  Sum_probs=30.9

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKY  294 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~  294 (303)
                      .++..|.+|-..   ++.+.--.|...||..|++.=+....    .||.|++
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            356779999864   44443344999999999986554322    4988864

>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.53  E-value=0.089  Score=39.08  Aligned_cols=50  Identities=22%  Similarity=0.430  Sum_probs=33.1

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKY  294 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~  294 (303)
                      ...++..|.||-..-.+++.+..=.|...||..|++.=+....    .||.|+.
T Consensus        12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~   65 (92)
T 2e6r_A           12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL   65 (92)
T ss_dssp             CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred             hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence            3345677999988754433333334999999999985443322    4999965

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=86.51  E-value=0.57  Score=33.43  Aligned_cols=47  Identities=21%  Similarity=0.445  Sum_probs=31.4

Q ss_pred             CcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccCc
Q 022069          250 SDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYNI  296 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I  296 (303)
                      ..-+||-..++++.....-. |...||..|+.-=-.     ..-.||.|+..-
T Consensus        12 ~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           12 PVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             ccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            33449999886444444444 999999999963221     234699998653

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=85.91  E-value=0.21  Score=38.09  Aligned_cols=38  Identities=18%  Similarity=0.488  Sum_probs=28.0

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHh
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLR  284 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~  284 (303)
                      .++..|.+|-+.-+.++.+.--.|...||..|++..+.
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~   42 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT   42 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence            46778999987743333355556999999999988764

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=85.06  E-value=0.3  Score=34.64  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHH---------hcCCCCcccccCccC
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---------RINATCPLCKYNIRR  298 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL---------~~~~tCPlCR~~I~~  298 (303)
                      .-+||-..+..+..+..-.|...||..|+.--.         ..+-.||.|+..-.+
T Consensus        17 ~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p   73 (76)
T 1wem_A           17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CEEECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence            444898887654444444599999999985321         235679999765443

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=83.68  E-value=0.22  Score=34.43  Aligned_cols=47  Identities=26%  Similarity=0.591  Sum_probs=32.0

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI  296 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I  296 (303)
                      .++..|.+|-..   ++.+..=.|...||..|++.=+....    .||.|+..-
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~   56 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT   56 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence            356789999863   43333334999999999986544322    599996643

>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*

Probab=83.53  E-value=0.33  Score=31.80  Aligned_cols=43  Identities=19%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             cceeecccccCCCceEEe--CCCCccChhhHHHHH----hcCCCCcccc
Q 022069          251 DCCICLSQYVDGAELYTL--PCNHHFHCGCISKWL----RINATCPLCK  293 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~WL----~~~~tCPlCR  293 (303)
                      .|++|...|.+++....-  .|...||..|+.---    ..+-.||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            478999998766544443  488899999986422    2456799885

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=83.35  E-value=0.63  Score=34.16  Aligned_cols=48  Identities=23%  Similarity=0.481  Sum_probs=33.1

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI  296 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I  296 (303)
                      ..++..|.+|-..   ++.+..-.|.-.||..|+++=+....    .||.|+..-
T Consensus        22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            4456789999864   44343334889999999987554422    599997643

>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*

Probab=82.96  E-value=0.62  Score=32.09  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=26.2

Q ss_pred             CCCCCcceeecccccCCCceEEe--CCCCccChhhHHH
Q 022069          246 HPEDSDCCICLSQYVDGAELYTL--PCNHHFHCGCISK  281 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~L--pC~H~FH~~CI~~  281 (303)
                      ++....|++|...|.+++....-  .|.-.||..|+.-
T Consensus         5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl   42 (65)
T 2vpb_A            5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM   42 (65)
T ss_dssp             ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred             CCCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence            34566799999999877665554  5999999999853

>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=82.03  E-value=0.21  Score=35.11  Aligned_cols=49  Identities=22%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             CCcceeecccccCCCceEEeC-CCCccChhhHHHHH----hcCCCCcccccCccC
Q 022069          249 DSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWL----RINATCPLCKYNIRR  298 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL----~~~~tCPlCR~~I~~  298 (303)
                      ...| ||-..+.+++....-. |...||..|+.---    ..+-.||.|+..-.+
T Consensus        16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p   69 (72)
T 1wee_A           16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP   69 (72)
T ss_dssp             EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred             ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence            3457 7988876665444444 99999999987532    123469999765433

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.47  E-value=1  Score=33.25  Aligned_cols=47  Identities=23%  Similarity=0.583  Sum_probs=28.7

Q ss_pred             CCcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCcccccCccC
Q 022069          249 DSDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKYNIRR  298 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~~I~~  298 (303)
                      +...+||-.... ++.+..=.  |. ..||..|+.  |...    -.||.|+..-.+
T Consensus        35 e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~k   88 (91)
T 1weu_A           35 EPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP   88 (91)
T ss_dssp             CCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCSS
T ss_pred             CCcEEECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCCc
Confidence            344449987653 43332223  54 689999997  4332    359999876544

>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}

Probab=80.69  E-value=0.41  Score=35.80  Aligned_cols=43  Identities=23%  Similarity=0.393  Sum_probs=29.4

Q ss_pred             cceeecccccCCCceEEeCCCCccChhhHHHHHhc---CCCCccccc
Q 022069          251 DCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI---NATCPLCKY  294 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~---~~tCPlCR~  294 (303)
                      .| ||-...+++..+..=.|.-.||..|+..=...   .-.||.|+.
T Consensus        30 rC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~   75 (98)
T 2lv9_A           30 RC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP   75 (98)
T ss_dssp             CC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred             Ee-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence            35 89887766654444459999999998753221   136999974

>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A

Probab=80.23  E-value=0.95  Score=31.71  Aligned_cols=46  Identities=24%  Similarity=0.562  Sum_probs=27.6

Q ss_pred             CCcceeecccccCCCceEEeC--CC-CccChhhHHHHHhcC----CCCcccccCccC
Q 022069          249 DSDCCICLSQYVDGAELYTLP--CN-HHFHCGCISKWLRIN----ATCPLCKYNIRR  298 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~Lp--C~-H~FH~~CI~~WL~~~----~tCPlCR~~I~~  298 (303)
                      +.-| ||-.... ++.+..=.  |. ..||..|+.  |...    -.||.|+..-.+
T Consensus        16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~k   68 (71)
T 1wen_A           16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESGP   68 (71)
T ss_dssp             CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSSS
T ss_pred             CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccccc
Confidence            3445 8977643 43222222  55 689999998  4332    259999875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	9e-09
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-08
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	8e-07
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	1e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	4e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	6e-04
d1wewa_	78	g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 69.1 bits (169), Expect = 4e-16
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNI 296
           +  +C +CL++  DG E   LP C H FH  C+  WL  ++TCPLC+  +
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 59.2 bits (143), Expect = 2e-12
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRR 298
           C ICL    + +    LPC H F   CI++W+R N TCPLCK  +  
Sbjct: 8   CPICLEDPSNYS--MALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGDTLV 303
           C IC     D   +   PC H     C++ W       CP C+  I+  + +V
Sbjct: 26  CKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 15/61 (24%)

Query: 248 EDSDCCICLSQYVDGA---------------ELYTLPCNHHFHCGCISKWLRINATCPLC 292
              +C IC +  +D                  +    CNH FH  CIS+WL+    CPL 
Sbjct: 20  VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 79

Query: 293 K 293
            
Sbjct: 80  N 80

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 9e-09
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 252 CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR 297
           C  C ++         LPC H    GC+         CP+C+    
Sbjct: 9   CQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWP 48

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-08
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 248 EDSDCCICLSQYVDGAELYTL--PCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGD 300
           +D  C  C +       L  +   C H     C+          CP C   +R+ +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (105), Expect = 2e-07
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 251 DCCICLSQYVDGA-ELYTLPCNHHFHCGCISKWLRI-NATCPLCK 293
           +C +C+          +   C +     C  +     N  CP C+
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWL---RINATCPLCKYNIRRGD 300
           +  +C ICL    +     +  C+H F   C+ K L   +  + CPLCK +I +  
Sbjct: 20  KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 8e-07
 Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 22/77 (28%)

Query: 246 HPEDSDCCICLSQYVDGAELYT---------------LPCNHHFHCGCISKWLR-----I 285
              + DC IC+ +    +                     C+H FH  C+           
Sbjct: 22  VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG 81

Query: 286 NATCPLCK--YNIRRGD 300
           +  CP CK  Y  + G 
Sbjct: 82  SLQCPSCKTIYGEKTGT 98

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 248 EDSDCCICLSQYVDGAEL--YTLPCNHHFHCGCISKWLRIN--ATCPLCK--YNIR 297
           +   C IC  +  +             + H  C+S WL I+    C +C   YN R
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNTR 60

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 239 STDELAL-HPEDSD----CCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLC 292
           ST  LA+  P        C IC     D        C H F   CI + L++  + CP C
Sbjct: 8   STKLLAVDFPAHFVKSISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSC 64

Query: 293 KYNIRRGD 300
           +Y     D
Sbjct: 65  RYPCFPTD 72

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 4e-06
 Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 8/55 (14%)

Query: 248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI--------NATCPLCKY 294
             S C +CL +Y          C   F   C+ +++ +          +CP    
Sbjct: 4   GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC 58

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 237 SNSTDELALHPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNI 296
           ++S   L    +   C  C +   +   L    C H F   C+S  +     CP+C    
Sbjct: 10  AHSRAALDRLEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCI--GTGCPVCYTPA 65

Query: 297 RRGD 300
              D
Sbjct: 66  WIQD 69

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 11/57 (19%), Positives = 13/57 (22%), Gaps = 3/57 (5%)

Query: 247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDTLV 303
           PE   C I L    D      +     +    I KWL                  L 
Sbjct: 6   PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 236 NSNSTDELALHPEDSDCCICLSQYVDGAELYT--LPCNHHFHCGCI 279
           +S S+ E    PE    C+C +     + +      C+   H GC+
Sbjct: 2   SSGSSGEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCV 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.75
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.54
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.52
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.5
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.48
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.46
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.46
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.29
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.23
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.18
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.18
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.17
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.01
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.97
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.96
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.82
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.46
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	94.08
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	93.69
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	90.79
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	90.26
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	89.67
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	89.55
d1wesa_	71	PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu	89.29
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	84.42
d1weea_	72	PHD finger protein At1g33420 {Thale cress (Arabido	84.32
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	83.77
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	83.01

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.75  E-value=2.7e-19  Score=121.58  Aligned_cols=51  Identities=39%  Similarity=1.036  Sum_probs=46.9

Q ss_pred             CCCCcceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      +++.+|+||+++|++++.++.+| |+|.||.+||++|++++.+||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            35678999999999999999886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.54  E-value=1.4e-15  Score=107.51  Aligned_cols=47  Identities=43%  Similarity=0.947  Sum_probs=42.1

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      ..+|+||++.+.++  .+.+||||.||.+||.+|++.+.+||+||+++.
T Consensus         5 ~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            45699999998754  678999999999999999999999999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.1e-16  Score=102.93  Aligned_cols=49  Identities=16%  Similarity=0.435  Sum_probs=41.9

Q ss_pred             cceeecccccCCCc-eEEeCCCCccChhhHHHHHhc-CCCCcccccCccCC
Q 022069          251 DCCICLSQYVDGAE-LYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRG  299 (303)
Q Consensus       251 ~C~ICL~~y~~~~~-lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~  299 (303)
                      +|+||+++|++++. ++.++|||.||.+|+++|++. +.+||+||+++.++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            79999999987765 455689999999999999986 56799999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.1e-15  Score=109.88  Aligned_cols=50  Identities=34%  Similarity=0.715  Sum_probs=42.4

Q ss_pred             CCCcceeecccccCCC---------------ceEEeCCCCccChhhHHHHHhcCCCCcccccCcc
Q 022069          248 EDSDCCICLSQYVDGA---------------ELYTLPCNHHFHCGCISKWLRINATCPLCKYNIR  297 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~---------------~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~  297 (303)
                      .+.+|+||++++.+..               .+..+||+|.||..||++||+.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3456999998886532               3678899999999999999999999999999865

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=9.5e-15  Score=102.18  Aligned_cols=53  Identities=21%  Similarity=0.526  Sum_probs=43.4

Q ss_pred             CCCcceeecccccCC--CceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069          248 EDSDCCICLSQYVDG--AELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD  300 (303)
Q Consensus       248 ed~~C~ICL~~y~~~--~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  300 (303)
                      ++.+|+||++++..+  ..+..+||||.||.+||.+|++. +.+||+||+++.+.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            567899999986433  24567789999999999999965 568999999997765

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.3e-14  Score=112.61  Aligned_cols=53  Identities=25%  Similarity=0.470  Sum_probs=42.4

Q ss_pred             CCCCcceeecccccC---------------CCceEEeCCCCccChhhHHHHHhcC-----CCCcccccCccCC
Q 022069          247 PEDSDCCICLSQYVD---------------GAELYTLPCNHHFHCGCISKWLRIN-----ATCPLCKYNIRRG  299 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~---------------~~~lr~LpC~H~FH~~CI~~WL~~~-----~tCPlCR~~I~~~  299 (303)
                      ..+.+|+||++++.+               ...++.++|+|.||.+||++|++.+     .+||+||+.+..+
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            356789999999854               2346778899999999999999753     4899999987554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-14  Score=104.85  Aligned_cols=52  Identities=25%  Similarity=0.692  Sum_probs=44.4

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDTL  302 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~i  302 (303)
                      +...|+||++.+.+   .+.+||||.||.+||++|++. +.+||+||++|...+.+
T Consensus        22 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          22 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             CTTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            34579999988765   488999999999999999975 57899999999887765

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.9e-13  Score=92.54  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             cceeecccccCCCceEEeC-CCCccChhhHHHHHhcCCCCcccccCccCCCCC
Q 022069          251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLRINATCPLCKYNIRRGDTL  302 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~i  302 (303)
                      .|+||++.++++   ..+| |||.||.+||.+|++.+.+||+||+++..+|.+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhce
Confidence            599999999876   5665 999999999999999999999999999887653

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.9e-13  Score=89.60  Aligned_cols=46  Identities=26%  Similarity=0.564  Sum_probs=39.8

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGD  300 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~  300 (303)
                      ..+|+||++.|.+.   +.+||||.||..||++|   +.+||+||+++..+.
T Consensus         6 ~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            35899999999876   67899999999999876   678999999997654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=2.9e-12  Score=94.01  Aligned_cols=50  Identities=30%  Similarity=0.634  Sum_probs=42.9

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGDT  301 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~~  301 (303)
                      ...|+||++.+.+.   ..+||||.|+..||.+|++. +.+||.||.++.+.+.
T Consensus        23 ~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l   73 (86)
T d1rmda2          23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence            35799999998775   78999999999999999975 4689999999876654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.18  E-value=4e-12  Score=87.04  Aligned_cols=48  Identities=25%  Similarity=0.600  Sum_probs=38.1

Q ss_pred             CCCCcceeecccccCCCceEEeCC-----CCccChhhHHHHHh--cCCCCcccccCcc
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPC-----NHHFHCGCISKWLR--INATCPLCKYNIR  297 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC-----~H~FH~~CI~~WL~--~~~tCPlCR~~I~  297 (303)
                      ++...|.||+++++++   ...||     +|.||..||.+|++  .+.+||+||++..
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3567899999998765   33444     59999999999995  4568999999864

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5e-12  Score=96.04  Aligned_cols=49  Identities=33%  Similarity=0.674  Sum_probs=41.7

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC---CCCcccccCccCCC
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN---ATCPLCKYNIRRGD  300 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~---~tCPlCR~~I~~~~  300 (303)
                      ..+|+||++.+.++   ..+||||.||..||.+|++.+   ..||+||.++..++
T Consensus        21 ~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            35799999999876   568999999999999999765   48999999987654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.5e-11  Score=91.04  Aligned_cols=50  Identities=22%  Similarity=0.477  Sum_probs=41.0

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      +...|+||++.|.++  +...+|||.||..||.+|+.  ..||.||.++...+.
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l   70 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL   70 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred             hcCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchhhC
Confidence            456799999999876  43457999999999999984  469999998876553

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.97  E-value=1.5e-10  Score=83.24  Aligned_cols=53  Identities=25%  Similarity=0.444  Sum_probs=46.0

Q ss_pred             CCCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC-CCCcccccCccCCCC
Q 022069          246 HPEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN-ATCPLCKYNIRRGDT  301 (303)
Q Consensus       246 ~~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~-~tCPlCR~~I~~~~~  301 (303)
                      .+++..|+||++-+.+.   ..++|||.|+..||.+|++.+ .+||.|+.++..++.
T Consensus         5 iP~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l   58 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL   58 (78)
T ss_dssp             CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred             CCccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccc
Confidence            45778899999999887   678999999999999999875 579999999887654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.3e-10  Score=83.92  Aligned_cols=51  Identities=12%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             CCCCcceeecccccCCCceEEeCCCCccChhhHHHHHhc-CCCCcccccCccCCC
Q 022069          247 PEDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRI-NATCPLCKYNIRRGD  300 (303)
Q Consensus       247 ~ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~-~~tCPlCR~~I~~~~  300 (303)
                      +++..|+||++-+.++   ..+||||.|+..||.+|+.. +.+||.||.++..++
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            5778899999999887   67999999999999999975 568999999987654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.7e-09  Score=81.01  Aligned_cols=54  Identities=15%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             CCCCCCcceeecccccCCCceEEeCCC-CccChhhHHHHHhcCCCCcccccCccCCCC
Q 022069          245 LHPEDSDCCICLSQYVDGAELYTLPCN-HHFHCGCISKWLRINATCPLCKYNIRRGDT  301 (303)
Q Consensus       245 ~~~ed~~C~ICL~~y~~~~~lr~LpC~-H~FH~~CI~~WL~~~~tCPlCR~~I~~~~~  301 (303)
                      ..+++..|+||.+-+.++   ..+||+ |.|...||.+|++.+.+||+||.++..++.
T Consensus        18 ~~P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             CCcHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            356789999999999998   789966 479999999999999999999999887654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2e-08  Score=74.19  Aligned_cols=46  Identities=22%  Similarity=0.533  Sum_probs=37.5

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC--------CCCcccc
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN--------ATCPLCK  293 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~--------~tCPlCR  293 (303)
                      ...+|+||++++..++..+.++|+|.||.+|+.+|++.+        -+||.|+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            346799999999877777777899999999999999532        2599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.0074  Score=38.11  Aligned_cols=45  Identities=27%  Similarity=0.546  Sum_probs=31.1

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKY  294 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~  294 (303)
                      +.|.||-..-++++.+.-=.|...||..|++.-+....    .||.||.
T Consensus         1 a~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           1 ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            45888876654443333334999999999998765433    5999975

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.69  E-value=0.0056  Score=40.63  Aligned_cols=51  Identities=20%  Similarity=0.427  Sum_probs=36.4

Q ss_pred             CCCcceeecccccCCCceEEeC-CCCccChhhHHHHHh-----cCCCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR-----INATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~-----~~~tCPlCR~~I~~  298 (303)
                      .+..|.+|...+++++....-. |+..||..|++.=..     .+-.||.|+..-.+
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            4567999999888877655555 999999999964211     12369999765433

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.79  E-value=0.13  Score=35.17  Aligned_cols=48  Identities=21%  Similarity=0.410  Sum_probs=33.6

Q ss_pred             CCcceeecccccCCCceEEeC-CCCccChhhHHH--H-Hhc--CCCCcccccCc
Q 022069          249 DSDCCICLSQYVDGAELYTLP-CNHHFHCGCISK--W-LRI--NATCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~--W-L~~--~~tCPlCR~~I  296 (303)
                      ...++||-..+++++....-. |.-.||..|+..  . ...  +-.||.|+..-
T Consensus        11 ~pv~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CCeEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            456779998887666555555 999999999852  1 121  24799998753

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.057  Score=36.21  Aligned_cols=45  Identities=24%  Similarity=0.510  Sum_probs=29.9

Q ss_pred             CCcceeecccccCCCceEEeCCCCccChhhHHHHHhcCC----CCcccccCc
Q 022069          249 DSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRINA----TCPLCKYNI  296 (303)
Q Consensus       249 d~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~~----tCPlCR~~I  296 (303)
                      ...|.+|-.   .++.+.-=.|...||..|++..+....    .||.|+..-
T Consensus         7 c~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            345666643   344443334999999999998775443    499997643

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.035  Score=36.23  Aligned_cols=49  Identities=24%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             CCCcceeecccccCCCceEEeCCCCccChhhHHHHHhcC----CCCcccccCccCC
Q 022069          248 EDSDCCICLSQYVDGAELYTLPCNHHFHCGCISKWLRIN----ATCPLCKYNIRRG  299 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~~WL~~~----~tCPlCR~~I~~~  299 (303)
                      ++..|.+|.+   .++.+.-=.|.-.||..|++.-+...    =.||.|+..-.++
T Consensus         8 ~~~~C~~C~~---~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~~kg   60 (61)
T d1mm2a_           8 HMEFCRVCKD---GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG   60 (61)
T ss_dssp             SCSSCTTTCC---CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCTT
T ss_pred             CcCCCcCCCC---CCeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcccCC
Confidence            3446888864   34433333488999999998766432    2599998765543

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.075  Score=36.58  Aligned_cols=36  Identities=25%  Similarity=0.660  Sum_probs=27.0

Q ss_pred             ccCCCCCCcceeecccccCCCceEEeC---CCCccChhhHHHH
Q 022069          243 LALHPEDSDCCICLSQYVDGAELYTLP---CNHHFHCGCISKW  282 (303)
Q Consensus       243 ~~~~~ed~~C~ICL~~y~~~~~lr~Lp---C~H~FH~~CI~~W  282 (303)
                      +.....|..|.|| .-+..++   .+|   |+-+||..|+++-
T Consensus         9 re~v~~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_           9 REPVVNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCCCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             ccCCCcCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence            3345577889999 6676663   346   6799999999996

>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.073  Score=35.86  Aligned_cols=48  Identities=25%  Similarity=0.587  Sum_probs=28.0

Q ss_pred             CCCcceeecccccCCCceEEe--CCC-CccChhhHHHHHhcC----CCCcccccCccC
Q 022069          248 EDSDCCICLSQYVDGAELYTL--PCN-HHFHCGCISKWLRIN----ATCPLCKYNIRR  298 (303)
Q Consensus       248 ed~~C~ICL~~y~~~~~lr~L--pC~-H~FH~~CI~~WL~~~----~tCPlCR~~I~~  298 (303)
                      ++..++||..... ++.+..-  .|. ..||..|+.  +...    =.||.||..=.+
T Consensus        14 ~e~~~CiC~~~~~-~~~i~c~~~~C~~~wfH~~Cvg--l~~~p~~~w~C~~C~~~~gp   68 (71)
T d1wesa_          14 NEPTYCLCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDSGP   68 (71)
T ss_dssp             SSCCCSTTCCCCC-SSEECCSCTTCSCCCEETTTTT--CSSCCSSCCCCTTTSSCCSC
T ss_pred             CCCCEEEeCCCCC-CCEEEEECCCCCCcCccCccCC--CCcCCCCcEECcCCccccCc
Confidence            3445669987643 3322222  143 579999985  3332    259999875443

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.42  E-value=0.35  Score=32.70  Aligned_cols=47  Identities=17%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             cceeecccccCCCceEEe---CCCCccChhhHHH----HHh-----cCCCCcccccCccC
Q 022069          251 DCCICLSQYVDGAELYTL---PCNHHFHCGCISK----WLR-----INATCPLCKYNIRR  298 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~L---pC~H~FH~~CI~~----WL~-----~~~tCPlCR~~I~~  298 (303)
                      ..+||-...+++..+ ..   .|...||..|+.-    .-.     .+-.||.|+..-.+
T Consensus        17 ~~C~C~~~~~~~~~i-~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~~p   75 (78)
T d1wewa_          17 VRCVCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP   75 (78)
T ss_dssp             CCCSSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred             cEeECCCccCCCcEE-EEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcCCC
Confidence            344999887665444 45   4999999999842    101     12469999765444

>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At1g33420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.32  E-value=0.073  Score=35.74  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=30.6

Q ss_pred             cceeecccccCCCceEEeC-CCCccChhhHHHHHh----cCCCCcccccCc
Q 022069          251 DCCICLSQYVDGAELYTLP-CNHHFHCGCISKWLR----INATCPLCKYNI  296 (303)
Q Consensus       251 ~C~ICL~~y~~~~~lr~Lp-C~H~FH~~CI~~WL~----~~~tCPlCR~~I  296 (303)
                      .| ||-..+++++.+..-. |...||..|+..=..    ..-.||.|+..-
T Consensus        18 ~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~~   67 (72)
T d1weea_          18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS   67 (72)
T ss_dssp             CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred             Ee-eCCCCcCCCCeEEEeCCCCCcCchhhcCCccccCCCCcEECcCCcCcC
Confidence            35 8888777776555544 999999999864211    223699997643

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.77  E-value=0.41  Score=31.97  Aligned_cols=48  Identities=23%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             CcceeecccccCCCceEEeCCCCccChhhHH----HH--H---hcCCCCcccccCccC
Q 022069          250 SDCCICLSQYVDGAELYTLPCNHHFHCGCIS----KW--L---RINATCPLCKYNIRR  298 (303)
Q Consensus       250 ~~C~ICL~~y~~~~~lr~LpC~H~FH~~CI~----~W--L---~~~~tCPlCR~~I~~  298 (303)
                      ..| ||-..+.++..+.-=.|.-.||..|+.    .-  .   ..+-.||.|+..-.+
T Consensus        17 ~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~p   73 (76)
T d1wema_          17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcCCC
Confidence            335 898776655443333499999999983    11  1   224589999765433

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.01  E-value=0.066  Score=37.42  Aligned_cols=47  Identities=21%  Similarity=0.485  Sum_probs=30.5

Q ss_pred             CCcceeecccccC-CCceEEeC-CCCccChhhHHHHHh-----c---CCCCcccccC
Q 022069          249 DSDCCICLSQYVD-GAELYTLP-CNHHFHCGCISKWLR-----I---NATCPLCKYN  295 (303)
Q Consensus       249 d~~C~ICL~~y~~-~~~lr~Lp-C~H~FH~~CI~~WL~-----~---~~tCPlCR~~  295 (303)
                      +..|.||.....+ +..+..-. |+..||..|++..+.     .   .=.||.|+..
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~   72 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ   72 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCch
Confidence            3569999865433 33444444 999999999875431     1   2359999654