Citrus Sinensis ID: 022074
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | 2.2.26 [Sep-21-2011] | |||||||
| Q40153 | 473 | LEC14B protein OS=Lithosp | N/A | no | 0.983 | 0.630 | 0.748 | 1e-133 | |
| O24467 | 475 | LEC14B homolog OS=Prunus | N/A | no | 0.993 | 0.633 | 0.716 | 1e-128 | |
| Q5E9I8 | 546 | DDB1- and CUL4-associated | yes | no | 0.798 | 0.443 | 0.522 | 5e-71 | |
| Q5R7H5 | 546 | DDB1- and CUL4-associated | yes | no | 0.844 | 0.468 | 0.5 | 6e-71 | |
| Q8TEB1 | 546 | DDB1- and CUL4-associated | yes | no | 0.844 | 0.468 | 0.5 | 6e-71 | |
| Q5M9G8 | 549 | DDB1- and CUL4-associated | yes | no | 0.798 | 0.440 | 0.522 | 1e-70 | |
| Q91VU6 | 549 | DDB1- and CUL4-associated | yes | no | 0.798 | 0.440 | 0.522 | 3e-70 | |
| P90794 | 571 | DDB1- and CUL4-associated | yes | no | 0.808 | 0.429 | 0.465 | 2e-54 | |
| A8XEN7 | 554 | DDB1- and CUL4-associated | N/A | no | 0.900 | 0.492 | 0.419 | 2e-53 | |
| Q96DI7 | 357 | U5 small nuclear ribonucl | no | no | 0.739 | 0.627 | 0.305 | 3e-19 |
| >sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 223/298 (74%), Positives = 257/298 (86%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
++PI HIV GS ES ANVT+IHDGLDFS+ DDGGYSFG+FS+KFSTDGRE+VAG+SD
Sbjct: 176 LTPIAHIVKFGSAATESHANVTDIHDGLDFSSNDDGGYSFGVFSIKFSTDGREIVAGTSD 235
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
+ I VYDLEA++LSLRI AH SDVN+VCF DESGHLIYSGSDDNLCKVWDRRC N KGKP
Sbjct: 236 ESICVYDLEADRLSLRISAHESDVNSVCFADESGHLIYSGSDDNLCKVWDRRCFNAKGKP 295
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AG+LMGHLEGITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSNA + R+ EWDYRWM
Sbjct: 296 AGILMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNAGGTIQSRNSEWDYRWM 355
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
+YP +ARDLKHP D S ATYKGHSVL TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV
Sbjct: 356 EYPQEARDLKHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLV 415
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 298
+G+QV+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA N +R++R
Sbjct: 416 TGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473
|
Lithospermum erythrorhizon (taxid: 34254) |
| >sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1175), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/303 (71%), Positives = 248/303 (81%), Gaps = 2/303 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
M+PIV+IV+VGS ESLANVTEIH+GLDFS D FGIFS++FSTDGRELVA S D
Sbjct: 175 MTPIVNIVNVGSSMTESLANVTEIHEGLDFSVGGDED-EFGIFSVRFSTDGRELVAASRD 233
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
IYVYDL+ANK++LRI AH+SDVNTVCF DE+GHLIYSGSDDNLCKVWDRRC N KG+P
Sbjct: 234 ASIYVYDLQANKVNLRIPAHSSDVNTVCFADETGHLIYSGSDDNLCKVWDRRCFNHKGQP 293
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AGVLMGHLEG+TFIDSRGDGRY ISNGKDQ +LWDIRKMSS A + R ++WDYRWM
Sbjct: 294 AGVLMGHLEGVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRAMYSPRLRDHDWDYRWM 353
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
+YP A+ LKHP DQS+ATY+GH VLRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV
Sbjct: 354 EYPAHAKTLKHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLV 413
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 300
+G QVA L +H PVRDCSWHP PMLVSSSWDG + RWEFPG+ + P L + R RR++
Sbjct: 414 TGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472
Query: 301 FYL 303
L
Sbjct: 473 RLL 475
|
Prunus armeniaca (taxid: 36596) |
| >sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 167/247 (67%), Gaps = 5/247 (2%)
Query: 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 99
F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H DVN V F D S +++S
Sbjct: 266 FAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADVSSQILFS 325
Query: 100 GSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
G DD +CKVWDRR + KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR
Sbjct: 326 GGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIR 385
Query: 159 KMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHF 214
+ SS ++ WDYRW P +A R LK P D S+ TY+GH VL TLIRC F
Sbjct: 386 RFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSLMTYRGHGVLHTLIRCRF 445
Query: 215 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274
SP +STGQ++IY+G V VYDL+SG V L H + VRD SWHP + +VSSSWDG
Sbjct: 446 SPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDG 505
Query: 275 DVVRWEF 281
++ W++
Sbjct: 506 NLRLWQY 512
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Bos taurus (taxid: 9913) |
| >sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 132/264 (50%), Positives = 173/264 (65%), Gaps = 8/264 (3%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP++STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
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May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Pongo abelii (taxid: 9601) |
| >sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 132/264 (50%), Positives = 173/264 (65%), Gaps = 8/264 (3%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRPDE---RRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP++STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
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May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Homo sapiens (taxid: 9606) |
| >sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 166/247 (67%), Gaps = 5/247 (2%)
Query: 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 99
F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H DVN V F D S +++S
Sbjct: 266 FAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFS 325
Query: 100 GSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
G DD +CKVWDRR + KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR
Sbjct: 326 GGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIR 385
Query: 159 KMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHF 214
+ SS + L WDYRW P +A + LK P D S+ TY+GH VL TLIRC F
Sbjct: 386 RFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKLPGDSSLMTYRGHGVLHTLIRCRF 445
Query: 215 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274
SP +STGQ++IY+G V VYDL+SG V L H + VRD SWHP + +VSSSWDG
Sbjct: 446 SPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDG 505
Query: 275 DVVRWEF 281
+ W++
Sbjct: 506 SLRLWQY 512
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Rattus norvegicus (taxid: 10116) |
| >sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/247 (52%), Positives = 166/247 (67%), Gaps = 5/247 (2%)
Query: 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 99
F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H DVN V F D S +++S
Sbjct: 266 FAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHEDDVNAVAFADISSQILFS 325
Query: 100 GSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
G DD +CKVWDRR + KP G L GH +GITFIDS+GD RYLISN KDQ IKLWDIR
Sbjct: 326 GGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKLWDIR 385
Query: 159 KMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSVLRTLIRCHF 214
+ SS + L WDYRW P A + LK P D S+ TY+GH VL TLIRC F
Sbjct: 386 RFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSLMTYRGHGVLHTLIRCRF 445
Query: 215 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274
SP +STGQ++IY+G V VYDL+SG V L H + VRD SWHP + +VSSSWDG
Sbjct: 446 SPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDG 505
Query: 275 DVVRWEF 281
++ W++
Sbjct: 506 NLRLWQY 512
|
May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex. Mus musculus (taxid: 10090) |
| >sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/258 (46%), Positives = 157/258 (60%), Gaps = 13/258 (5%)
Query: 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 99
+F +KFS ++V G+S I+V+D+E + I+ AH DVN+VCF D +LIYS
Sbjct: 270 AVFCVKFSDSSEQIVCGTSQYSIHVFDVEQRRRIRTIVNAHEDDVNSVCFADLGSNLIYS 329
Query: 100 GSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158
DD L KVWD+R + +P GV GH +G+T +DSR D RYL+SN KDQ IK+WD+R
Sbjct: 330 AGDDGLVKVWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKVWDLR 389
Query: 159 K---MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCH 213
K MS + +S WDYRW PP L P D SV T +GHSVL TL+R +
Sbjct: 390 KFSNMSGVEATRACVQSQHWDYRWQPAPP---GLCQPVAGDTSVMTLRGHSVLHTLVRAN 446
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
FSP STG++YIYTG V VYD++SG LK HT+ VR+C WHP++ +VSS+WD
Sbjct: 447 FSP-ESTGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWD 505
Query: 274 G--DVVRWEFPGNGEAAP 289
G V W+ G AP
Sbjct: 506 GVTTVWTWDERQEGVIAP 523
|
Involved in regulation of lifespan. Caenorhabditis elegans (taxid: 6239) |
| >sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 162/286 (56%), Gaps = 13/286 (4%)
Query: 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 72
G ME N +D+ +F ++FS D ++V G+S+ I+V+D+E +
Sbjct: 221 GRMEQEDNQNITWFPIDWHGEHAVQNQCAVFCVRFSDDSEQIVCGTSEYSIHVFDVEQRR 280
Query: 73 LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGHLEG 130
I+ AH DVN+VCF D +LIYS DD L KVWD+R + P GV GH +G
Sbjct: 281 RIRTIVNAHEDDVNSVCFADYGSNLIYSAGDDGLVKVWDKRAWSDGDVIPVGVFAGHRDG 340
Query: 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQAR 187
+T++DSR D RYL+SN KDQ IK+WD+RK S + +S WDYRW PP
Sbjct: 341 VTYVDSRQDERYLLSNSKDQTIKVWDLRKFSCQGGVEATRACVQSQHWDYRWQPAPP--- 397
Query: 188 DLKHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 245
L P D SV T +GHSVL TL+R FSP +TG+++IYTG + VYD+V+G
Sbjct: 398 GLCQPVQGDTSVMTLRGHSVLHTLVRAKFSP-ENTGRRFIYTGCARGEIVVYDIVTGTVS 456
Query: 246 AALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 289
LK H + VR+C WHP + +VS+SWDG V W+ G AP
Sbjct: 457 RRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVWTWDERAEGVIAP 502
|
Involved in regulation of lifespan. Caenorhabditis briggsae (taxid: 6238) |
| >sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 31/255 (12%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+S + L ++TDG L + S+D + V+D E + R+ HTS VN+ L
Sbjct: 107 GHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQL 166
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMG----HLEGITFIDSRGDGRYLISNGKDQAI 152
+ +GSDD K+WD R K A + + +TF D+ +IS G D I
Sbjct: 167 VCTGSDDGTVKLWDIR------KKAAIQTFQNTYQVLAVTFNDTSDQ---IISGGIDNDI 217
Query: 153 KLWDIRK------MSSNASCNLGFR-SYEWDY---RWMDYPPQARDLK--HPCDQSVATY 200
K+WD+R+ M +A G S E Y MD + D++ P ++ V +
Sbjct: 218 KVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIF 277
Query: 201 KG--HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 258
+G H+ + L+RC +SP G K I GS D VYV+D S + L H + +
Sbjct: 278 QGNVHNFEKNLLRCSWSP---DGSK-IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEV 333
Query: 259 SWHPSQPMLVSSSWD 273
++HP +P+++S+S D
Sbjct: 334 AFHPDEPIIISASSD 348
|
Component of the U5 small nuclear ribonucleoprotein (snRNP) complex. The U5 snRNP is part of the spliceosome, a multiprotein complex that catalyzes the removal of introns from pre-messenger RNAs. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| 224128636 | 488 | predicted protein [Populus trichocarpa] | 0.990 | 0.614 | 0.843 | 1e-149 | |
| 296086665 | 365 | unnamed protein product [Vitis vinifera] | 0.980 | 0.813 | 0.836 | 1e-149 | |
| 225436851 | 486 | PREDICTED: LEC14B homolog [Vitis vinifer | 0.980 | 0.611 | 0.836 | 1e-148 | |
| 357442621 | 495 | LEC14B protein [Medicago truncatula] gi| | 0.996 | 0.610 | 0.802 | 1e-145 | |
| 358248886 | 493 | uncharacterized protein LOC100815163 [Gl | 0.996 | 0.612 | 0.801 | 1e-144 | |
| 3924603 | 555 | putative WD-repeat protein [Arabidopsis | 0.993 | 0.542 | 0.792 | 1e-140 | |
| 22328262 | 493 | transducin/WD40 domain-containing protei | 0.993 | 0.610 | 0.792 | 1e-140 | |
| 297809835 | 493 | transducin family protein [Arabidopsis l | 0.993 | 0.610 | 0.792 | 1e-140 | |
| 449462296 | 488 | PREDICTED: LEC14B homolog [Cucumis sativ | 0.996 | 0.618 | 0.784 | 1e-138 | |
| 449491526 | 488 | PREDICTED: LOW QUALITY PROTEIN: LEC14B h | 0.996 | 0.618 | 0.781 | 1e-137 |
| >gi|224128636|ref|XP_002320381.1| predicted protein [Populus trichocarpa] gi|222861154|gb|EEE98696.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/301 (84%), Positives = 269/301 (89%), Gaps = 1/301 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIVD GS ESLANVTE HDGLDFS+ D GGYSFGIFS+KFSTDGRELVAGS+D
Sbjct: 188 MSPIVHIVDAGSAETESLANVTEFHDGLDFSSGD-GGYSFGIFSVKFSTDGRELVAGSND 246
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLE NKLSLRILAHTSDVNTVCF DESGHLI+SGSDDNLCKVWDRRC KGKP
Sbjct: 247 DSIYVYDLEQNKLSLRILAHTSDVNTVCFADESGHLIFSGSDDNLCKVWDRRCFIAKGKP 306
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AGVL GHLEGITFIDS GDGRY ISNGKDQ IKLWDIRKM+ NA+ G R+YEWDYRWM
Sbjct: 307 AGVLTGHLEGITFIDSHGDGRYFISNGKDQTIKLWDIRKMAPNATSYSGLRNYEWDYRWM 366
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYP +ARDLKHPCDQSVATYKGHSVLRTLIRC+FSPVYSTGQKYIYTGSHDSCVY+YDLV
Sbjct: 367 DYPYEARDLKHPCDQSVATYKGHSVLRTLIRCYFSPVYSTGQKYIYTGSHDSCVYIYDLV 426
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 300
+GE V+ L++H SPVRDCSWHP PMLVSSSWDGDVV+WEFPGNGEA P KKRIRRRQ
Sbjct: 427 TGELVSLLQHHKSPVRDCSWHPYYPMLVSSSWDGDVVKWEFPGNGEAPVPSTKKRIRRRQ 486
Query: 301 F 301
F
Sbjct: 487 F 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086665|emb|CBI32300.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/299 (83%), Positives = 276/299 (92%), Gaps = 2/299 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIV++GS ESLAN+TEIHDGLDFSAADD GYSFGIFS+KFSTDGRELVAGSSD
Sbjct: 67 MSPIVHIVNIGSAATESLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGRELVAGSSD 126
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEANKLSLRILAHTSDVNTVCF DESGHLIYSGSDD+LCKVWDRRC KGKP
Sbjct: 127 DSIYVYDLEANKLSLRILAHTSDVNTVCFADESGHLIYSGSDDSLCKVWDRRCFISKGKP 186
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AGVLMGHLEGITFIDSRGDGR+LISN KDQ+IKLWDIRKMSSNA+C GFR+YEWDYRWM
Sbjct: 187 AGVLMGHLEGITFIDSRGDGRHLISNSKDQSIKLWDIRKMSSNATCTPGFRNYEWDYRWM 246
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYP QAR+LKHPCDQS++TYKGHSVLRTLIRC+FSP YSTGQKYIY+GS DSC+Y+YDL+
Sbjct: 247 DYPTQARELKHPCDQSLSTYKGHSVLRTLIRCYFSPSYSTGQKYIYSGSSDSCIYIYDLL 306
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
+G QVA L++H S VRDC+WHP+ P+LVSSSWDGD+V+WEFPGNGE PPL KKRIRR+
Sbjct: 307 TGAQVATLEHHKSVVRDCNWHPNYPILVSSSWDGDIVKWEFPGNGE--PPLIKKRIRRK 363
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436851|ref|XP_002271734.1| PREDICTED: LEC14B homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/299 (83%), Positives = 276/299 (92%), Gaps = 2/299 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIV++GS ESLAN+TEIHDGLDFSAADD GYSFGIFS+KFSTDGRELVAGSSD
Sbjct: 188 MSPIVHIVNIGSAATESLANITEIHDGLDFSAADDEGYSFGIFSVKFSTDGRELVAGSSD 247
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEANKLSLRILAHTSDVNTVCF DESGHLIYSGSDD+LCKVWDRRC KGKP
Sbjct: 248 DSIYVYDLEANKLSLRILAHTSDVNTVCFADESGHLIYSGSDDSLCKVWDRRCFISKGKP 307
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AGVLMGHLEGITFIDSRGDGR+LISN KDQ+IKLWDIRKMSSNA+C GFR+YEWDYRWM
Sbjct: 308 AGVLMGHLEGITFIDSRGDGRHLISNSKDQSIKLWDIRKMSSNATCTPGFRNYEWDYRWM 367
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYP QAR+LKHPCDQS++TYKGHSVLRTLIRC+FSP YSTGQKYIY+GS DSC+Y+YDL+
Sbjct: 368 DYPTQARELKHPCDQSLSTYKGHSVLRTLIRCYFSPSYSTGQKYIYSGSSDSCIYIYDLL 427
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
+G QVA L++H S VRDC+WHP+ P+LVSSSWDGD+V+WEFPGNGE PPL KKRIRR+
Sbjct: 428 TGAQVATLEHHKSVVRDCNWHPNYPILVSSSWDGDIVKWEFPGNGE--PPLIKKRIRRK 484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442621|ref|XP_003591588.1| LEC14B protein [Medicago truncatula] gi|355480636|gb|AES61839.1| LEC14B protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/304 (80%), Positives = 268/304 (88%), Gaps = 2/304 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIV+VGS ESLANVTEIHDGLDFS+ DDGGYSFGIFSLKFSTDG+ELVAG+S
Sbjct: 188 MSPIVHIVNVGSSETESLANVTEIHDGLDFSSNDDGGYSFGIFSLKFSTDGKELVAGTSG 247
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLE NK+SLRILAHT+DVNTVCF DE+GHLIYSGSDD+ CKVWDRRCLN K KP
Sbjct: 248 DSIYVYDLETNKVSLRILAHTADVNTVCFADETGHLIYSGSDDSFCKVWDRRCLNAKDKP 307
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN--LGFRSYEWDYR 178
AGVLMGHLEGITFIDSRGDGRY ISNGKDQ IKLWDIRKMSSN + N G+RS+EWDYR
Sbjct: 308 AGVLMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNRVRGYRSFEWDYR 367
Query: 179 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238
WMDYPPQA+DL HPCDQSVATY+GHSVLRTL+RC FSP +STGQKYIYTGSH++CVYVYD
Sbjct: 368 WMDYPPQAKDLNHPCDQSVATYRGHSVLRTLVRCFFSPAFSTGQKYIYTGSHNACVYVYD 427
Query: 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 298
LVSG QVA LK+H SPVRDCSWHP PMLVSSSWDGDVV+W+ G+ + A KKR+ +
Sbjct: 428 LVSGAQVATLKHHKSPVRDCSWHPFHPMLVSSSWDGDVVKWQSAGSSDMAASSVKKRVNK 487
Query: 299 RQFY 302
R FY
Sbjct: 488 RHFY 491
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248886|ref|NP_001239957.1| uncharacterized protein LOC100815163 [Glycine max] gi|255636711|gb|ACU18691.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/302 (80%), Positives = 263/302 (87%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIV+ GS ESLANVTEIHDGLDFS+ DDGGYSFGIF +KFS DG+ELVAGSS
Sbjct: 188 MSPIVHIVNAGSAETESLANVTEIHDGLDFSSNDDGGYSFGIFCVKFSKDGKELVAGSSG 247
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEANKLSLRILAHT DVNTVCF DE+ HLIYSGSDD+ CKVWDRRCL KGKP
Sbjct: 248 DSIYVYDLEANKLSLRILAHTCDVNTVCFADETSHLIYSGSDDSFCKVWDRRCLIAKGKP 307
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AGVLMGHLEGITFID+RGDGRY ISNGKDQ IKLWDIRKMSSN + N G+RSYEWDYRWM
Sbjct: 308 AGVLMGHLEGITFIDTRGDGRYFISNGKDQTIKLWDIRKMSSNVTSNPGYRSYEWDYRWM 367
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYPPQA+DL HPCDQSVATY+GHSVLRTLIRC+FSP +STGQKYIYTGSH++CVY+YDLV
Sbjct: 368 DYPPQAKDLTHPCDQSVATYRGHSVLRTLIRCYFSPAFSTGQKYIYTGSHNACVYIYDLV 427
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 300
SG QVA LK+H SPVRDCSWHP LVSSSWDGDVV+WEF G+G+ KKR+ R
Sbjct: 428 SGAQVATLKHHKSPVRDCSWHPFHTTLVSSSWDGDVVKWEFAGSGDTPGSSTKKRVWTRH 487
Query: 301 FY 302
FY
Sbjct: 488 FY 489
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3924603|gb|AAC79104.1| putative WD-repeat protein [Arabidopsis thaliana] gi|7269787|emb|CAB77787.1| putative WD-repeat protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/303 (79%), Positives = 272/303 (89%), Gaps = 2/303 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGSSD
Sbjct: 253 MSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSD 312
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC + KP
Sbjct: 313 DSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKP 372
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRW 179
AGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A R+YEWDYRW
Sbjct: 373 AGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRW 432
Query: 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239
MDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS VY+YDL
Sbjct: 433 MDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDL 492
Query: 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
VSG++VA LK+H+SPVRDC+WHP P L+SSSWDGD+V+WEFPG+GE AP ++KKR+RRR
Sbjct: 493 VSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKKRVRRR 551
Query: 300 QFY 302
FY
Sbjct: 552 HFY 554
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328262|ref|NP_192211.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|334186335|ref|NP_001190666.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|20466538|gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] gi|23198298|gb|AAN15676.1| putative WD-repeat protein [Arabidopsis thaliana] gi|332656861|gb|AEE82261.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656862|gb|AEE82262.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/303 (79%), Positives = 272/303 (89%), Gaps = 2/303 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGSSD
Sbjct: 191 MSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSD 250
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC + KP
Sbjct: 251 DSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKP 310
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRW 179
AGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A R+YEWDYRW
Sbjct: 311 AGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRW 370
Query: 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239
MDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS VY+YDL
Sbjct: 371 MDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDL 430
Query: 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
VSG++VA LK+H+SPVRDC+WHP P L+SSSWDGD+V+WEFPG+GE AP ++KKR+RRR
Sbjct: 431 VSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKKRVRRR 489
Query: 300 QFY 302
FY
Sbjct: 490 HFY 492
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809835|ref|XP_002872801.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318638|gb|EFH49060.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/303 (79%), Positives = 272/303 (89%), Gaps = 2/303 (0%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIVDVGSGT ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGR++VAGSSD
Sbjct: 191 MSPIVHIVDVGSGTTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGRDIVAGSSD 250
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC + KP
Sbjct: 251 DSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKP 310
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRW 179
AGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A R+YEWDYRW
Sbjct: 311 AGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRW 370
Query: 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239
MDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS VY+YDL
Sbjct: 371 MDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDL 430
Query: 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
VSG++VA LK+H+SPVRDC+WHP P L+SSSWDGD+V+WEFPG+GE AP ++KKR+RRR
Sbjct: 431 VSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGE-APIMSKKRVRRR 489
Query: 300 QFY 302
FY
Sbjct: 490 HFY 492
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462296|ref|XP_004148877.1| PREDICTED: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/302 (78%), Positives = 262/302 (86%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPI+HIV+V S ESLANVTEIH+GLDF A DG SFGIFS+KFSTDGRELVAGSSD
Sbjct: 187 MSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELVAGSSD 246
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD CKVWDRRC KGK
Sbjct: 247 DSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFISKGKA 306
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AG+L GH+EGITFIDSRGDGRYLISNGKDQ IKLWDIRKMS+NA+ R+Y+WDYRWM
Sbjct: 307 AGILEGHVEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRWM 366
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYPP A++L HP D+S+ATYKGHSVLRTLIRC+FSP YSTGQKYIYTGSH+SCVY+YDL+
Sbjct: 367 DYPPHAKNLMHPRDRSLATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVYIYDLL 426
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 300
+G VA LK+H SPVRDCSWHP PMLVSSSWDGDVV+WEFPG+GEA P NKKR+RRR
Sbjct: 427 TGVLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKRVRRRH 486
Query: 301 FY 302
FY
Sbjct: 487 FY 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491526|ref|XP_004158926.1| PREDICTED: LOW QUALITY PROTEIN: LEC14B homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/302 (78%), Positives = 261/302 (86%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPI+HIV+V S ESLANVTEIH+GLDF A DG SFGIFS+KFSTDGRELVAGSSD
Sbjct: 187 MSPIIHIVNVTSAETESLANVTEIHEGLDFCAHGDGRDSFGIFSVKFSTDGRELVAGSSD 246
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLE NKLSLRILAH SDVNTVCF DE+GHL+YSGSDD CKVWDRRC KGK
Sbjct: 247 DSIYVYDLETNKLSLRILAHRSDVNTVCFADETGHLVYSGSDDTFCKVWDRRCFISKGKA 306
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180
AG+L GH+EGITFIDSRGDGRYLISNGKDQ IKLWDIRKMS+NA+ R+Y+WDYR M
Sbjct: 307 AGILEGHVEGITFIDSRGDGRYLISNGKDQTIKLWDIRKMSNNATHYNRPRNYDWDYRXM 366
Query: 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
DYPP A++L HP D+S+ATYKGHSVLRTLIRC+FSP YSTGQKYIYTGSH+SCVY+YDL+
Sbjct: 367 DYPPHAKNLMHPRDRSLATYKGHSVLRTLIRCYFSPEYSTGQKYIYTGSHNSCVYIYDLL 426
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 300
+G VA LK+H SPVRDCSWHP PMLVSSSWDGDVV+WEFPG+GEA P NKKR+RRR
Sbjct: 427 TGVLVATLKHHKSPVRDCSWHPQYPMLVSSSWDGDVVKWEFPGSGEAPTPPNKKRVRRRH 486
Query: 301 FY 302
FY
Sbjct: 487 FY 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 303 | ||||||
| TAIR|locus:2139335 | 493 | AT4G03020 "AT4G03020" [Arabido | 0.993 | 0.610 | 0.792 | 4.2e-134 | |
| UNIPROTKB|F1SGL8 | 546 | DCAF11 "Uncharacterized protei | 0.844 | 0.468 | 0.507 | 1.8e-69 | |
| UNIPROTKB|Q8TEB1 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.844 | 0.468 | 0.503 | 2.1e-68 | |
| UNIPROTKB|Q5R7H5 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.844 | 0.468 | 0.503 | 2.1e-68 | |
| UNIPROTKB|Q5E9I8 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.844 | 0.468 | 0.503 | 2.7e-68 | |
| UNIPROTKB|F1MVT2 | 546 | DCAF11 "DDB1- and CUL4-associa | 0.844 | 0.468 | 0.503 | 3.5e-68 | |
| ZFIN|ZDB-GENE-050809-116 | 541 | dcaf11 "ddb1 and cul4 associat | 0.854 | 0.478 | 0.516 | 3.5e-68 | |
| RGD|1311288 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.844 | 0.466 | 0.503 | 4.4e-68 | |
| MGI|MGI:90168 | 549 | Dcaf11 "DDB1 and CUL4 associat | 0.844 | 0.466 | 0.503 | 9.2e-68 | |
| ASPGD|ASPL0000074293 | 660 | AN4800 [Emericella nidulans (t | 0.666 | 0.306 | 0.533 | 1.3e-61 |
| TAIR|locus:2139335 AT4G03020 "AT4G03020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1314 (467.6 bits), Expect = 4.2e-134, P = 4.2e-134
Identities = 240/303 (79%), Positives = 272/303 (89%)
Query: 1 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 60
MSPIVHIVDVGSG+ ES ANVTEIHDGLDFS+ +DGGYSFGIFS+KFSTDGRE+VAGSSD
Sbjct: 191 MSPIVHIVDVGSGSTESHANVTEIHDGLDFSSDEDGGYSFGIFSVKFSTDGREVVAGSSD 250
Query: 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120
D IYVYDLEAN++SLR +AHTSDVNTVCF DESG+LI SGSDDNLCKVWDRRC + KP
Sbjct: 251 DSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWDRRCFIGRDKP 310
Query: 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG-FRSYEWDYRW 179
AGVL+GHLEG+TFIDSRGDGRY ISNGKDQ IKLWDIRKMSS+A R+YEWDYRW
Sbjct: 311 AGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKLWDIRKMSSSAPARHEVLRNYEWDYRW 370
Query: 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239
MDYP +ARDLKHP DQSV+TYKGHSVLRTLIRC+FSP +STGQKYIYTGS+DS VY+YDL
Sbjct: 371 MDYPTEARDLKHPLDQSVSTYKGHSVLRTLIRCYFSPAHSTGQKYIYTGSNDSSVYIYDL 430
Query: 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRR 299
VSG++VA LK+H+SPVRDC+WHP P L+SSSWDGD+V+WEFPG+GEA P ++KKR+RRR
Sbjct: 431 VSGDKVAVLKHHSSPVRDCNWHPYYPTLISSSWDGDLVKWEFPGSGEA-PIMSKKRVRRR 489
Query: 300 QFY 302
FY
Sbjct: 490 HFY 492
|
|
| UNIPROTKB|F1SGL8 DCAF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 134/264 (50%), Positives = 173/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD + F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRPVER---RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADMSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ +WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQDWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP YSTGQ+YIY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPTYSTGQQYIYSGCSTGKVVVYDLLSGHIVKKLTSHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
|
| UNIPROTKB|Q8TEB1 DCAF11 "DDB1- and CUL4-associated factor 11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 133/264 (50%), Positives = 174/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP++STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
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| UNIPROTKB|Q5R7H5 DCAF11 "DDB1- and CUL4-associated factor 11" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 133/264 (50%), Positives = 174/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP++STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
|
| UNIPROTKB|Q5E9I8 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 133/264 (50%), Positives = 173/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP +STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
|
| UNIPROTKB|F1MVT2 DCAF11 "DDB1- and CUL4-associated factor 11" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 133/264 (50%), Positives = 173/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADVSSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRS---YEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS ++ WDYRW P +A R LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP +STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTTHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
|
| ZFIN|ZDB-GENE-050809-116 dcaf11 "ddb1 and cul4 associated factor 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 138/267 (51%), Positives = 171/267 (64%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
E H LD + D+ F +FSL STDG+E++ G++D C+YV+D E NK +L+I AH
Sbjct: 256 ETHTALDLNP-DER--RFCVFSLAASTDGKEILGGANDGCLYVFDREQNKRTLKIDAHED 312
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S L++SGSDD LCKVWDRR L + +P G L GH +GITFI S+GD R
Sbjct: 313 DVNAVAFADSSSQLLFSGSDDALCKVWDRRTLREDRPQPVGHLAGHRDGITFIHSKGDAR 372
Query: 142 YLISNGKDQAIKLWDIRKMSSN---ASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWD+RK S A+ L WDYRW P +A + K D SV
Sbjct: 373 YLISNSKDQTIKLWDVRKFSPKEGLAASRLAVTQQNWDYRWQQVPQRALKRHKLTGDTSV 432
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP +STGQK+IYTG + +YD+++G V L H + VRD
Sbjct: 433 MTYRGHGVLHTLIRCRFSPEFSTGQKFIYTGCSTGKIVIYDVLTGSVVCKLSNHDACVRD 492
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEFPGN 284
SWHP +VSSSWDG + WE N
Sbjct: 493 VSWHPYNNNMVSSSWDGAIRLWEHTQN 519
|
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| RGD|1311288 Dcaf11 "DDB1 and CUL4 associated factor 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 133/264 (50%), Positives = 172/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS + L WDYRW P +A + LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKKAWKKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP +STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG + W++
Sbjct: 489 VSWHPFEEKIVSSSWDGSLRLWQY 512
|
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| MGI|MGI:90168 Dcaf11 "DDB1 and CUL4 associated factor 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 133/264 (50%), Positives = 172/264 (65%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 82
+ H LD D+ F +FS+ S+DGRE++ G++D C+YV+D E N+ +L+I +H
Sbjct: 252 DTHTALDLRP-DER--RFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRTLQIESHED 308
Query: 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGR 141
DVN V F D S +++SG DD +CKVWDRR + KP G L GH +GITFIDS+GD R
Sbjct: 309 DVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDAR 368
Query: 142 YLISNGKDQAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSV 197
YLISN KDQ IKLWDIR+ SS + L WDYRW P A + LK P D S+
Sbjct: 369 YLISNSKDQTIKLWDIRRFSSREGMEASRLAATQQNWDYRWQQVPKIAWKKLKLPGDSSL 428
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
TY+GH VL TLIRC FSP +STGQ++IY+G V VYDL+SG V L H + VRD
Sbjct: 429 MTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRD 488
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
SWHP + +VSSSWDG++ W++
Sbjct: 489 VSWHPFEEKIVSSSWDGNLRLWQY 512
|
|
| ASPGD|ASPL0000074293 AN4800 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 111/208 (53%), Positives = 147/208 (70%)
Query: 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG- 94
G F ++S++FS DGRE+VAG+ D + VYDLE + LRI H DVN VCFGD+S
Sbjct: 332 GRDGFAVWSVRFSGDGREIVAGTGDHSVIVYDLETRQSVLRIRNHEDDVNAVCFGDKSSP 391
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154
H++YSGSDD+ +VWDRR + G+ AGV +GH EG+T++DS+GDGRY++SN KDQ +KL
Sbjct: 392 HILYSGSDDSTVRVWDRRSM-ADGREAGVFVGHTEGLTYVDSKGDGRYVLSNSKDQTMKL 450
Query: 155 WDIRKMSSNASCN-LGFRSYE--WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211
WD+RKM S A + L SY +DYR+ +P HP D SV T++GHSVLRTLIR
Sbjct: 451 WDLRKMMSTAKFDTLEPTSYGTGFDYRFDPFPSDFY-YPHPHDCSVVTFRGHSVLRTLIR 509
Query: 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDL 239
CHFSP S+ +Y+Y+GS D VYV++L
Sbjct: 510 CHFSPPGSSDSRYVYSGSEDGKVYVWNL 537
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O24467 | LE14B_PRUAR | No assigned EC number | 0.7161 | 0.9933 | 0.6336 | N/A | no |
| Q40153 | LE14B_LITER | No assigned EC number | 0.7483 | 0.9834 | 0.6300 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00140822 | hypothetical protein (488 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_XIV000147 | hypothetical protein (451 aa) | • | 0.493 | |||||||
 | gw1.IX.47.1 | hypothetical protein (385 aa) | • | 0.476 | |||||||
 | eugene3.00140830 | hypothetical protein (166 aa) | • | 0.462 | |||||||
 | gw1.VIII.402.1 | hypothetical protein (356 aa) | • | 0.453 | |||||||
 | gw1.XII.1370.1 | hypothetical protein (314 aa) | • | 0.452 | |||||||
 | gw1.VI.132.1 | hypothetical protein (322 aa) | • | 0.449 | |||||||
 | eugene3.00160385 | hypothetical protein (218 aa) | • | 0.445 | |||||||
 | eugene3.00030383 | hypothetical protein (239 aa) | • | 0.445 | |||||||
 | fgenesh4_pm.C_LG_XV000453 | hypothetical protein (244 aa) | • | 0.430 | |||||||
 | estExt_Genewise1_v1.C_LG_X6506 | hypothetical protein (370 aa) | • | 0.420 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 303 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-30 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-29 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-23 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-17 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-32
Identities = 67/246 (27%), Positives = 105/246 (42%), Gaps = 47/246 (19%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV-CFGDESGH 95
G++ G+ + FS DG+ L GS D I V+DLE +L + HT V V D G
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD--GT 64
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
+ SGS D ++WD G+ L GH ++ + DGR L S+ +D+ IK+W
Sbjct: 65 YLASGSSDKTIRLWDLE----TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215
D+ + + T +GH+ + FS
Sbjct: 121 DVET----------------------------------GKCLTTLRGHT--DWVNSVAFS 144
Query: 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275
P ++ + S D + ++DL +G+ VA L HT V ++ P L+SSS DG
Sbjct: 145 P----DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200
Query: 276 VVRWEF 281
+ W+
Sbjct: 201 IKLWDL 206
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-30
Identities = 69/238 (28%), Positives = 96/238 (40%), Gaps = 45/238 (18%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ + S+ FS DGR L + S D I V+D+E K + HT VN+V F G
Sbjct: 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF-SPDGTF 149
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ S S D K+WD GK L GH + + DG L+S+ D IKLWD
Sbjct: 150 VASSSQDGTIKLWD----LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216
+ + + T +GH + FSP
Sbjct: 206 LST----------------------------------GKCLGTLRGHE--NGVNSVAFSP 229
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274
+ +GS D + V+DL +GE V L HT+ V +W P L S S DG
Sbjct: 230 ----DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 4e-29
Identities = 67/243 (27%), Positives = 105/243 (43%), Gaps = 45/243 (18%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ + + S DG L +GSSD I ++DLE + + HTS V++V F G +
Sbjct: 49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAF-SPDGRI 107
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ S S D KVWD GK L GH + + + DG ++ S+ +D IKLWD
Sbjct: 108 LSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216
+R VAT GH+ + FSP
Sbjct: 164 LRTGKC----------------------------------VATLTGHT--GEVNSVAFSP 187
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
G+K + + S D + ++DL +G+ + L+ H + V ++ P +L S S DG +
Sbjct: 188 ---DGEKLL-SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243
Query: 277 VRW 279
W
Sbjct: 244 RVW 246
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-23
Identities = 51/204 (25%), Positives = 78/204 (38%), Gaps = 45/204 (22%)
Query: 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132
L + HT V V F G L+ +GS D KVWD G+ L GH +
Sbjct: 1 LRRTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVR 55
Query: 133 FIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192
+ + DG YL S D+ I+LWD+
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLET--------------------------------- 82
Query: 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252
+ V T GH+ + FSP + + + S D + V+D+ +G+ + L+ HT
Sbjct: 83 -GECVRTLTGHT--SYVSSVAFSP----DGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135
Query: 253 SPVRDCSWHPSQPMLVSSSWDGDV 276
V ++ P + SSS DG +
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTI 159
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-21
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 47/198 (23%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+ S+ FS DG + + S D I ++DL K + HT +VN+V F + L+ S S
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL-SSS 196
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161
D K+WD GK G L GH G+ + DG L S +D I++WD+R
Sbjct: 197 SDGTIKLWDLS----TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-- 250
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC-HFSPVYST 220
+ V T GH+ + +SP
Sbjct: 251 --------------------------------GECVQTLSGHT---NSVTSLAWSPDG-- 273
Query: 221 GQKYIYTGSHDSCVYVYD 238
K + +GS D + ++D
Sbjct: 274 --KRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.7 bits (226), Expect = 8e-21
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 20/277 (7%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AH 80
+ D S+ G+ I S+ FS DG L++GSSD I ++DL+ + ++ L H
Sbjct: 49 SLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH 108
Query: 81 TSDVNTVCFGDESGHLIYS--GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138
S V+ + G+ I S D K+WD L+ GK L GH E +T +
Sbjct: 109 DSSVSKLALSSPDGNSILLASSSLDGTVKLWD---LSTPGKLIRTLEGHSESVTSLAFSP 165
Query: 139 DGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK--HPCDQ 195
DG+ L S D IKLWD+R ++ + + + P L D
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHTDPVSSLAFSPDGGLLIASGSSDG 221
Query: 196 SVATYKGHS--VLRTLIRCHFSPV---YSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALK 249
++ + + +LR+ + H V +S + +GS D + ++DL S + L
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS 281
Query: 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 286
H+S V ++ P +L S S DG V W+
Sbjct: 282 GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.3 bits (212), Expect = 6e-19
Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 13/255 (5%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95
G++ + SL FS DG L+A S D I ++DL KL L+ SD F G
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF-SPDGS 254
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
L+ SGS D ++WD L L GH + + DG+ L S D ++LW
Sbjct: 255 LLASGSSDGTIRLWD---LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSVLRTLIRCH 213
D+ + +L + +E + + P L D ++ + +
Sbjct: 312 DLE--TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG 369
Query: 214 FSPVYST----GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVS 269
S V S + + +GS D V ++DL +G + L HTS V + P L S
Sbjct: 370 HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLAS 429
Query: 270 SSWDGDVVRWEFPGN 284
S D + W+ +
Sbjct: 430 GSSDNTIRLWDLKTS 444
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.1 bits (201), Expect = 2e-17
Identities = 73/253 (28%), Positives = 107/253 (42%), Gaps = 22/253 (8%)
Query: 42 IFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 100
+ SL FS DG+ L +GSS D I ++DL K + HT V+++ F + G LI SG
Sbjct: 158 VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217
Query: 101 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160
S D ++WD + L GH + + S DG L S D I+LWD+R
Sbjct: 218 SSDGTIRLWDLSTGKLL---RSTLSGHSDSVVSSFSP-DGSLLASGSSDGTIRLWDLRSS 273
Query: 161 SS----NASCNLGFRSYEWDYRW-------MDYPPQARDLKHPCDQSVATYKGHSVLRTL 209
SS + + S + D + DL+ S T KGH +
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE--GPV 331
Query: 210 IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVS 269
FSP G + GS D + ++DL +G+ + S V S+ P ++ S
Sbjct: 332 SSLSFSP---DGSLLVSGGSDDGTIRLWDLRTGKPL-KTLEGHSNVLSVSFSPDGRVVSS 387
Query: 270 SSWDGDVVRWEFP 282
S DG V W+
Sbjct: 388 GSTDGTVRLWDLS 400
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-15
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 42/162 (25%)
Query: 122 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181
L GH G+T + DG+ L + D IK+WD+
Sbjct: 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLET---------------------- 40
Query: 182 YPPQARDLKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240
+ + T KGH+ +R + Y+ +GS D + ++DL
Sbjct: 41 ------------GELLRTLKGHTGPVRDVAASADG-------TYLASGSSDKTIRLWDLE 81
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
+GE V L HTS V ++ P +L SSS D + W+
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 9e-11
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 196 SVATYKGHSVLRTLIRC-HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
T KGH + C FSP K + TGS D + V+DL +GE + LK HT P
Sbjct: 1 LRRTLKGH---TGGVTCVAFSPD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTGP 53
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRW 279
VRD + L S S D + W
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLW 78
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.2 bits (139), Expect = 1e-09
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEA 70
SG+ + + ++ G S+ G+ + SL FS DG LV+G SDD I ++DL
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT 360
Query: 71 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130
K + H++ V +V F G ++ SGS D ++WD G L GH
Sbjct: 361 GKPLKTLEGHSN-VLSVSF-SPDGRVVSSGSTDGTVRLWDLS----TGSLLRNLDGHTSR 414
Query: 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRK 159
+T +D DG+ L S D I+LWD++
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-06
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
SGE + LK HT PV ++ P L S S DG + W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-05
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
G+ + LK HT PV ++ P +L S S DG V W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 18/146 (12%)
Query: 8 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-------FSTD-GRELVAGSS 59
+D S LA+ ++ DG + + G S G K F ++ GR L GS+
Sbjct: 581 IDYSSADPTLLASGSD--DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSA 638
Query: 60 DDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118
D +Y YDL KL L ++ H+ V+ V F D S + S S DN K+WD +++ G
Sbjct: 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS--TLVSSSTDNTLKLWDLS-MSISG 695
Query: 119 ---KPAGVLMGHLEGITFID-SRGDG 140
P MGH F+ S DG
Sbjct: 696 INETPLHSFMGHTNVKNFVGLSVSDG 721
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 7e-05
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110
HT V +V F G+L+ SGSDD +VWD
Sbjct: 9 GHTGPVTSVAF-SPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 39/234 (16%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
++S+ +S+ L+A SDD +S+ + +++ V F ESG + GS
Sbjct: 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637
Query: 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161
D+ +D R + P ++GH + ++++ D L+S+ D +KLWD+
Sbjct: 638 ADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI 693
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG 221
S + + + ++ GH+ ++ + S
Sbjct: 694 SGIN----------------------------ETPLHSFMGHTNVKNFVG------LSVS 719
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSSSWDG 274
YI TGS + V+VY V + K+ T PV + + S W G
Sbjct: 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 3e-04
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110
HT V +V F G + SGSDD K+WD
Sbjct: 10 GHTGPVTSVAF-SPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.002
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
G+ L GH +T + DG+YL S D IKLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 58/276 (21%), Positives = 96/276 (34%), Gaps = 65/276 (23%)
Query: 42 IFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDES 93
I + F+ D ++L S D I + + L+ I HT V V F +
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137
Query: 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153
+++ S D + VWD +GK V+ H + IT ++ DG L + KD+ +
Sbjct: 138 MNVLASAGADMVVNVWDVE----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLN 193
Query: 154 LWDIRK------MSSNASC---------------NLGFRSYE------WDYRWMDYPPQA 186
+ D R + ++AS LG + WD R M P
Sbjct: 194 IIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253
Query: 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQV 245
DL DQS A F P + +Y GS + + ++L++
Sbjct: 254 VDL----DQSSAL--------------FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295
Query: 246 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
Y + P + + + W D + E
Sbjct: 296 FCSSYSSV-------EPHKGLCMMPKWSLDTRKCEI 324
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (80), Expect = 0.003
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
GK L GH +T + DG L S D +++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.94 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.92 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.92 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| PTZ00420 | 568 | coronin; Provisional | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.88 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.86 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.84 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.83 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.82 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.77 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.77 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.75 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.75 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.74 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.74 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.74 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.72 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.72 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.72 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.72 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.71 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.68 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.68 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.68 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.68 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.68 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.63 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.62 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.62 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.61 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.6 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.6 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.6 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.58 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.57 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.57 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.56 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.56 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.55 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.55 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.53 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.52 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.51 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.49 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.48 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.48 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.47 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.47 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.43 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.43 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.42 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.4 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.4 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.38 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.37 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.36 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.36 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.35 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.32 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.32 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.31 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.28 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.27 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.27 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.24 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.22 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.2 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.2 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.18 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.18 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.15 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.14 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.13 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.12 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.11 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.1 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.09 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.09 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.05 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.04 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.96 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.9 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.9 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.9 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.88 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.84 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.82 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.81 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.8 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.77 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.74 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.73 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.71 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.62 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.61 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.6 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.6 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.6 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.57 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.57 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.51 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.48 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.47 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.38 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.36 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.34 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.32 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.3 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.15 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.13 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.1 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.06 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.04 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.02 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.97 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.97 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.92 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.9 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.89 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.89 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.88 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.86 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.86 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.85 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.83 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.82 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.77 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.76 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.76 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.75 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.74 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.71 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.66 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.59 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.57 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.47 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.42 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.34 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.18 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.11 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.01 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.92 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.87 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.69 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.67 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.65 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.46 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.42 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.42 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.35 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.32 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.32 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.26 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.24 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.19 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.15 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.09 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.04 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.93 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.91 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.89 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.85 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 95.71 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.71 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.56 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.07 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.9 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.87 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.79 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.4 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.1 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.87 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.87 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.59 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.37 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.36 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.12 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.11 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 92.85 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.65 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.6 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 92.57 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.14 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.83 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 91.81 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.33 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 91.07 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.52 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 90.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.26 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.26 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 90.19 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.93 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 89.73 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 88.79 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 88.72 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 88.06 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.71 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 87.63 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 87.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 86.73 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 85.81 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 84.98 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 84.55 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 84.48 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 84.23 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.64 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 83.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 83.37 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 83.2 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.12 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.86 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 82.63 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 82.49 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 82.41 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 81.42 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 81.09 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 80.03 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=253.97 Aligned_cols=256 Identities=21% Similarity=0.364 Sum_probs=186.4
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEecccCCeEEEEEccC--
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGDE-- 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~-- 92 (303)
|....+|+.-+-... -.--||...|.|++|+|||+.||+|+.||+|++||.++|+.. ..+.+|...|++++|.|-
T Consensus 136 D~TvR~WD~~TeTp~--~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl 213 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPL--FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHL 213 (480)
T ss_pred CceEEeeccCCCCcc--eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeeccccc
Confidence 445566665222211 133699999999999999999999999999999999998765 457899999999999642
Q ss_pred --CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc-cC
Q 022074 93 --SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN-LG 169 (303)
Q Consensus 93 --~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~ 169 (303)
...+|+++++||+|+|||+. .+.....+.||..+|+|+.+..+| +|++|+.|++|++|+........... +.
T Consensus 214 ~p~~r~las~skDg~vrIWd~~----~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHa 288 (480)
T KOG0271|consen 214 VPPCRRLASSSKDGSVRIWDTK----LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHA 288 (480)
T ss_pred CCCccceecccCCCCEEEEEcc----CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccc
Confidence 24589999999999999975 334566788999999999998766 89999999999999865421110000 00
Q ss_pred c------cceeeeceeeeCCCCCc-------------------------cccCCCC-------------CcceEEecccc
Q 022074 170 F------RSYEWDYRWMDYPPQAR-------------------------DLKHPCD-------------QSVATYKGHSV 205 (303)
Q Consensus 170 ~------~~~~~~~~~~~~~~~~~-------------------------~~~~~~~-------------~~~~~~~~~~~ 205 (303)
. .+.++..+.-.|.+... .+...++ +++..+.||+.
T Consensus 289 hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~ 368 (480)
T KOG0271|consen 289 HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA 368 (480)
T ss_pred hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh
Confidence 0 00011111111111111 1111111 11222333332
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+. ....||||++++|+|+-|+.|++||-++|+.+..|.+|-++|..++||.|.++|+|+|.|.+|++|++...
T Consensus 369 lV------n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 369 LV------NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred he------eeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 21 23458999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=259.64 Aligned_cols=229 Identities=25% Similarity=0.382 Sum_probs=196.2
Q ss_pred eEEEEE----ccCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe
Q 022074 4 IVHIVD----VGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 78 (303)
Q Consensus 4 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~ 78 (303)
..||++ +-+++-|.++-+|.. .+.. -++..||...|..++|+|+|++|+++|.|.+-||||+.++.+.....
T Consensus 224 ~fhP~~~~~~lat~s~Dgtvklw~~---~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 224 VFHPVDSDLNLATASADGTVKLWKL---SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred EEccCCCccceeeeccCCceeeecc---CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc
Confidence 357774 667888888888876 3322 34558999999999999999999999999999999999999888888
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
+|..+|.+++|++ ++.+++||+.|..-|+||+| +++.+-.+.||...|..++|+|+|-.++|||.|++++|||+|
T Consensus 301 GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR----tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 301 GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR----TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred ccccccceeEecC-CCceeeccCccchhheeecc----cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9999999999965 68999999999999999998 455667789999999999999999999999999999999999
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVY 237 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iw 237 (303)
...+ +.++.+|..+..-++ |+| .|.+|+|++.|++++||
T Consensus 376 ~r~~----------------------------------ly~ipAH~nlVS~Vk------~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 376 MRSE----------------------------------LYTIPAHSNLVSQVK------YSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred cccc----------------------------------ceecccccchhhheE------ecccCCeEEEEcccCcceeee
Confidence 6432 223333433322222 444 68999999999999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 238 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 238 d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
..++.++++.+.+|++.|.+++.+||+.+++|++.|+++++|.
T Consensus 416 s~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=273.38 Aligned_cols=206 Identities=25% Similarity=0.425 Sum_probs=185.4
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+.||+.||+.++|+|+.++|+++|.|++||||.+.+........+|..+|..+.|+ +.+.+|+|||.|++.++|...
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d-- 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTD-- 523 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEec-CCceEEEecCCCceeeeeecc--
Confidence 46999999999999999999999999999999999998887888999999999997 569999999999999999865
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
...|.+.+.||...|.|+.|+|+.+|++|||.|++||+||....
T Consensus 524 --~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------------------------------- 567 (707)
T KOG0263|consen 524 --HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------------------------------- 567 (707)
T ss_pred --cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC----------------------------------
Confidence 35678899999999999999999999999999999999998642
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+..+.||...... ..|||+|++|++|++||.|.+||+.+++.+..+.+|++.|.++.||.+|..||++|.|+
T Consensus 568 ~~VRiF~GH~~~V~a------l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn 641 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTA------LAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN 641 (707)
T ss_pred cEEEEecCCCCceEE------EEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC
Confidence 235566777644433 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCCC
Q 022074 275 DVVRWEFPGNG 285 (303)
Q Consensus 275 ~i~~Wd~~~~~ 285 (303)
++++||+....
T Consensus 642 sV~lWD~~~~~ 652 (707)
T KOG0263|consen 642 SVRLWDLTKVI 652 (707)
T ss_pred eEEEEEchhhc
Confidence 99999986543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=231.83 Aligned_cols=264 Identities=22% Similarity=0.347 Sum_probs=196.6
Q ss_pred ceEEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecc
Q 022074 3 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAH 80 (303)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h 80 (303)
|-.++|+.-+|+.|+.|..|+.++|.=.-++- =-+.-|..+...|+++.|+++++-. |||||+.++. ....+.+|
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEecc
Confidence 55689999999999999999999998221111 1123499999999999999998775 9999998875 45678899
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
+..|..+.|. .+++.+.||++||++|+||+|... ......|..+|+.+..+|+...|++|..+|.|++||++..
T Consensus 83 ~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~-----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 83 TKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS-----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred CCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc-----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 9999999995 568999999999999999998422 2234468899999999999999999999999999999853
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCC------------------CcceEEecccceeeeEEEeeeeeeeCCC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD------------------QSVATYKGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
... +.+ .+...-.++.+...+++..+..... .++..++.|. ..+.+|. +|||+
T Consensus 157 ~c~--~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~--~~il~C~----lSPd~ 227 (311)
T KOG0315|consen 157 SCT--HEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN--GHILRCL----LSPDV 227 (311)
T ss_pred ccc--ccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc--ceEEEEE----ECCCC
Confidence 211 111 0011111222223333332221111 0111122222 1233443 67899
Q ss_pred eEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 223 KYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++||++|.|.+++||+.++. +....+++|+.++++++||.|++||+||+.|+..++|+++..
T Consensus 228 k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 228 KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC
Confidence 99999999999999999987 556678999999999999999999999999999999998754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=249.24 Aligned_cols=204 Identities=25% Similarity=0.367 Sum_probs=179.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
|=+.||..+.|++|++.|+|||++|.++||+.++.....++.+|+..|.++.|+|. ++..++||+.||+|++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~--- 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS--- 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC---
Confidence 56678999999999999999999999999999999888999999999999999987 47789999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...++..+.||...|..++|+|+|++|+|++.|.+-|+||++.......
T Consensus 250 -~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~------------------------------ 298 (459)
T KOG0272|consen 250 -QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL------------------------------ 298 (459)
T ss_pred -CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh------------------------------
Confidence 3367888999999999999999999999999999999999975332111
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..||. +..++.+|.+||.+++|||.|..-+|||+++|.++..+.+|..+|.+|+|||+|-.|||||.|++
T Consensus 299 ----QEGHs------~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 299 ----QEGHS------KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ----hcccc------cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 11222 11234457789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
+++||+..-
T Consensus 369 ~kVWDLR~r 377 (459)
T KOG0272|consen 369 CKVWDLRMR 377 (459)
T ss_pred EEEeeeccc
Confidence 999998743
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=235.37 Aligned_cols=228 Identities=26% Similarity=0.407 Sum_probs=190.4
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-----CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCe
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 84 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v 84 (303)
|-||+|+..|.+|+--+|.+. .--..||+-.|.+++|.| ..++++++|.||+|+|||+..++.+..+.+|+..|
T Consensus 172 iASG~~dg~I~lwdpktg~~~-g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQI-GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred hhccccCCeEEEecCCCCCcc-cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 679999999999998777655 445589999999999986 57789999999999999999999998999999999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccc-----------------------------cC-------------------
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCL-----------------------------NV------------------- 116 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~-----------------------------~~------------------- 116 (303)
+|++|.- ..++.|||.|++|++|+...+ ..
T Consensus 251 TCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 9999953 358999999999999974210 00
Q ss_pred ---------------------------CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 117 ---------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 117 ---------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
..+++....||..-|+.+.|+||+.++++++.|++||+||.+..+
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk-------- 400 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK-------- 400 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcc--------
Confidence 011333456899999999999999999999999999999987533
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.+.++.||-...+ ...++.|.++|++|+.|.++++||+++.++...+.
T Consensus 401 --------------------------~lasfRGHv~~VY------qvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 401 --------------------------FLASFRGHVAAVY------QVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred --------------------------hhhhhhhccceeE------EEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 2344444432221 22367789999999999999999999999888999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+|.+.|.+++|+|||..+++|+.|..+++|.
T Consensus 449 Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 449 GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=222.21 Aligned_cols=227 Identities=23% Similarity=0.348 Sum_probs=188.3
Q ss_pred cCchhhcccccc-ccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 11 GSGTMESLANVT-EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
|+..+|+.-.+. +--+|...-.-...||+..+.|+.|.+| ..|+++|.|.+.-+||+++++....+.+|.+.|-++.+
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 666677665555 1112222223345899999999999985 56999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
.|.+++.|+||+-|++.+|||.|. +...+.|.||...|+++.|.|+|.-|+||+.|+++|+||+|...+...++.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~----~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~- 269 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRS----GQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH- 269 (343)
T ss_pred CCCCCCeEEecccccceeeeeccC----cceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc-
Confidence 776899999999999999999983 456778999999999999999999999999999999999997543322211
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.. ......+..||..|++|.+|..|.++.+||.-.++.+..+.
T Consensus 270 ---------------------------------~~----~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 270 ---------------------------------DS----IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ---------------------------------Cc----ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence 00 00111234578889999999999999999999999999999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+|+.+|.++..+|||..|+|||+|.++++|.
T Consensus 313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=216.27 Aligned_cols=230 Identities=21% Similarity=0.293 Sum_probs=179.2
Q ss_pred EccCchhhccccccccccCcCcccc---cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 9 DVGSGTMESLANVTEIHDGLDFSAA---DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
++=+++||-.+=+|....-+..-+- -..||+.-|..+..++||++++++|+|+++|+||+.+++...++.+|...|.
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL 109 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE
Confidence 4558899988877776443222111 1259999999999999999999999999999999999988889999999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCC
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
+++|+++ +.+++||+.|.++++|+.... ......-.+|.+-|.++.|+|+ ..+|+++|.|++||+||++..+..
T Consensus 110 sva~s~d-n~qivSGSrDkTiklwnt~g~---ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 110 SVAFSTD-NRQIVSGSRDKTIKLWNTLGV---CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred EEEecCC-CceeecCCCcceeeeeeeccc---EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh
Confidence 9999764 678999999999999996421 1111111223667999999997 789999999999999999853321
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
..+-||...... ..+||||.+.++|+.||.+.+||+..++
T Consensus 186 ----------------------------------~~~~gh~~~v~t------~~vSpDGslcasGgkdg~~~LwdL~~~k 225 (315)
T KOG0279|consen 186 ----------------------------------TTFIGHSGYVNT------VTVSPDGSLCASGGKDGEAMLWDLNEGK 225 (315)
T ss_pred ----------------------------------hccccccccEEE------EEECCCCCEEecCCCCceEEEEEccCCc
Confidence 112223222211 2368999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++.+ .|..+|.+++|+|+..+|+.+- +..|++||..+.
T Consensus 226 ~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 226 NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESK 264 (315)
T ss_pred eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccch
Confidence 88887 4888999999999988777665 556999998754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=233.20 Aligned_cols=257 Identities=23% Similarity=0.377 Sum_probs=195.3
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
=|++||.++-||+.++-..- -.+..||+.+|.+++|+.+|..++++|.|+.+++||+++|+....+. -...+.|+.|+
T Consensus 231 LS~gmD~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~ 308 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFH 308 (503)
T ss_pred EecCCCceEEEEEEecCcce-ehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecC
Confidence 37899999999999873333 34668999999999999999999999999999999999998765443 33467899998
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
|++.+.|++|+.|+.|+.||+|. +..+..+..|..+|..+.|-+++.++++.+.|+++++|+.+........ .
T Consensus 309 pd~~n~fl~G~sd~ki~~wDiRs----~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i---~ 381 (503)
T KOG0282|consen 309 PDNQNIFLVGGSDKKIRQWDIRS----GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNI---A 381 (503)
T ss_pred CCCCcEEEEecCCCcEEEEeccc----hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhh---c
Confidence 87778999999999999999984 3456667789999999999999999999999999999998753221100 0
Q ss_pred cceeeeceeeeCCCCCccccCC-CCCcceE--------------EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHP-CDQSVAT--------------YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
..-......+...|..+.+... .++.+.. +.||.. ..+.....|||||++|++|+.||.+.
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v----aGys~~v~fSpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV----AGYSCQVDFSPDGRTLCSGDSDGKVN 457 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec----cCceeeEEEcCCCCeEEeecCCccEE
Confidence 0000011112222222222111 1222222 233321 22233456889999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEee
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWE 280 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd 280 (303)
+||.++-+++..+++|..++..+.|+|..+ .+||++.||.|++|+
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999875 799999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=209.70 Aligned_cols=222 Identities=23% Similarity=0.364 Sum_probs=187.8
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC------ceEEEEecccCCeE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSLRILAHTSDVN 85 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~------~~~~~~~~h~~~v~ 85 (303)
|+|-|.-.=||+-++.++.-++. -....|.+++|+|.|+.+|+|+-|+...||++.+. +...++.+|++-+.
T Consensus 72 SaSqDGklIvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylS 149 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLS 149 (343)
T ss_pred eeccCCeEEEEEcccccceeEEe--cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeE
Confidence 67777777899999999765433 33678999999999999999999999999999865 23456889999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
|+.|.+ +..++|+|.|.++.+||++ .+.....|.||.+.|.+++++| +++.+++|+.|+..+|||+|...
T Consensus 150 cC~f~d--D~~ilT~SGD~TCalWDie----~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--- 220 (343)
T KOG0286|consen 150 CCRFLD--DNHILTGSGDMTCALWDIE----TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--- 220 (343)
T ss_pred EEEEcC--CCceEecCCCceEEEEEcc----cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---
Confidence 999954 4678899999999999986 5567788999999999999999 89999999999999999998532
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
.++++.||...+..+ .|.|+|.-+++|++|+++++||++..+.
T Consensus 221 -------------------------------c~qtF~ghesDINsv------~ffP~G~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 221 -------------------------------CVQTFEGHESDINSV------RFFPSGDAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred -------------------------------eeEeecccccccceE------EEccCCCeeeecCCCceeEEEeecCCcE
Confidence 345666665544333 3667899999999999999999999888
Q ss_pred EEEeecC--CCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 245 VAALKYH--TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 245 ~~~~~~h--~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+..++.. ..+|++++||..|++|.+|..|.++.+||.
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 8887632 368999999999999999999999999995
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=208.51 Aligned_cols=205 Identities=22% Similarity=0.368 Sum_probs=171.1
Q ss_pred cCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCC-----CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 34 DDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
...||+..|.+++..+. -+.+++++.|.++.+|++.. |..+..+.+|...|+.+..++ ++++++|+++|+++|
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLR 88 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEE
Confidence 45799999999999986 55788899999999998865 445678899999999999864 588999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+||+. .+++.+.|.||...|.++++++|.++++||++|+++++|++-.. |
T Consensus 89 lWDl~----~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-----c--------------------- 138 (315)
T KOG0279|consen 89 LWDLA----TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-----C--------------------- 138 (315)
T ss_pred EEEec----CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-----E---------------------
Confidence 99985 34567789999999999999999999999999999999997421 1
Q ss_pred cccCCCCCcceEEecc--cceeeeEEEeeeeeeeCC--CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 188 DLKHPCDQSVATYKGH--SVLRTLIRCHFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
..+...+ .....++ . |+|+ ..+++++|.|+++++||+.+.+....+-+|+..++.|++|||
T Consensus 139 ---------k~t~~~~~~~~WVscv--r----fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 139 ---------KYTIHEDSHREWVSCV--R----FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred ---------EEEEecCCCcCcEEEE--E----EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCC
Confidence 1111111 1111222 2 4444 789999999999999999999988899999999999999999
Q ss_pred CCeEEEEeCCCCEEEeecCCC
Q 022074 264 QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|...++|+.||++.+||+...
T Consensus 204 GslcasGgkdg~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCCceEEEEEccCC
Confidence 999999999999999999755
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=224.49 Aligned_cols=220 Identities=22% Similarity=0.391 Sum_probs=180.3
Q ss_pred ccCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
|=||.-|..|.||+. +..+ --..+||++.|.|+.|.. +.+++||.|.+|++||.+++.....+..|.+.|-.+.
T Consensus 210 iVSGlrDnTikiWD~---n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDK---NSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLR 284 (499)
T ss_pred hhcccccCceEEecc---ccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEE
Confidence 447888888888888 5443 344589999999999974 5899999999999999999999999999999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|+ ..+++|+|+|.++++||..... .......+.||..+|+.++|+ ++|+++++.|++|++|++....
T Consensus 285 f~---ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e------- 351 (499)
T KOG0281|consen 285 FS---NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE------- 351 (499)
T ss_pred Ee---CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee-------
Confidence 95 3489999999999999986432 223345678999999999984 5699999999999999986421
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
.+.++.||..-+.++ . ..++++++|++|.+|++||+..|.++..+
T Consensus 352 ---------------------------fvRtl~gHkRGIACl------Q--Yr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 352 ---------------------------FVRTLNGHKRGIACL------Q--YRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred ---------------------------eehhhhcccccceeh------h--ccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 133344443222221 1 35799999999999999999999999999
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|+.-|.++.| |.+.++||+.||+|++||+...
T Consensus 397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence 999999999999 5678999999999999998754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=236.34 Aligned_cols=200 Identities=24% Similarity=0.425 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-------------------------------eEEEEecccCCeEEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------------------------------LSLRILAHTSDVNTVC 88 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-------------------------------~~~~~~~h~~~v~~l~ 88 (303)
.++.|..|++|++.+|.|-.|..|++|.+...+ ...++.+|.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 369999999999999999999999999987421 2245789999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|+|+ .++|+++|+|++||+|.++. ......+.||..+|+.+.|+|.|-||||+|.|++.++|......
T Consensus 459 FsPd-~rfLlScSED~svRLWsl~t----~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~------- 526 (707)
T KOG0263|consen 459 FSPD-RRFLLSCSEDSSVRLWSLDT----WSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK------- 526 (707)
T ss_pred eccc-ccceeeccCCcceeeeeccc----ceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-------
Confidence 9864 78999999999999999863 34455688999999999999999999999999999999865311
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+...+.||-....+. .|+|+..|++|||.|.++|+||+.+|..+..|
T Consensus 527 ---------------------------PlRifaghlsDV~cv------~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF 573 (707)
T KOG0263|consen 527 ---------------------------PLRIFAGHLSDVDCV------SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF 573 (707)
T ss_pred ---------------------------chhhhcccccccceE------EECCcccccccCCCCceEEEEEcCCCcEEEEe
Confidence 122333333222222 37788999999999999999999999999999
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.++|++++|||+|++||||++||.|++||++..
T Consensus 574 ~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999999999999999999999999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=233.47 Aligned_cols=261 Identities=33% Similarity=0.548 Sum_probs=202.5
Q ss_pred cCchhhccccccccccCcC-cccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceEEEEecccCCeEEEE
Q 022074 11 GSGTMESLANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~~~~~~h~~~v~~l~ 88 (303)
.+++.+-++.+|..-++.. . .....||...|.+++|+|+|+++++++.|++++|||+ ..+.....+.+|...|++++
T Consensus 175 ~~~~~~~~i~~~~~~~~~~~~-~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~ 253 (456)
T KOG0266|consen 175 AAASSDGLIRIWKLEGIKSNL-LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA 253 (456)
T ss_pred EEccCCCcEEEeecccccchh-hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence 3455666677777633331 2 2334899999999999999999999999999999999 44577788899999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC--ccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN--ASC 166 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~--~~~ 166 (303)
|+++ ++++++|+.|++|++||++. ++..+.+.+|.+.|++++|++++++|++++.|+.|++||+...... ...
T Consensus 254 f~p~-g~~i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~ 328 (456)
T KOG0266|consen 254 FSPD-GNLLVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLL 328 (456)
T ss_pred ecCC-CCEEEEecCCCcEEEEeccC----CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecc
Confidence 9876 59999999999999999873 5677889999999999999999999999999999999999875511 111
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCC------------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCD------------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
.... ... ......+.++...+..... .....+.+|... ..|.+.+.++++++++++|+.|+.|
T Consensus 329 ~~~~-~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 329 SGAE-NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL---VRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred cCCC-CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc---ceeEecccccCCCCeEEEEeCCceE
Confidence 0000 000 1233344444444433222 223334444432 2566777778899999999999999
Q ss_pred EEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEe--CCCCEEEeecC
Q 022074 235 YVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 282 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s--~Dg~i~~Wd~~ 282 (303)
++||..++..+..+.+| ...+..++|+|..+++++++ .|+.+++|..+
T Consensus 404 ~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 404 YVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999989999999 89999999999999999999 78999999854
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=217.06 Aligned_cols=249 Identities=23% Similarity=0.375 Sum_probs=197.7
Q ss_pred eEEEE--EccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEecc
Q 022074 4 IVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAH 80 (303)
Q Consensus 4 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h 80 (303)
|.||. ++-++|-|+.|-||+.-+|.= .....||+.+|.+|+|+..|+++++++.|-.+++||..+. +....+.+|
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh 192 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGH 192 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCc
Confidence 44554 456777799999999866643 5577999999999999999999999999999999999773 334557789
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
+..|.+++|.|. ++.++|++.|.+|+.|+.. ++..+..+.+|.+-|..+....||..+++++.|.++++|-+...
T Consensus 193 ~h~vS~V~f~P~-gd~ilS~srD~tik~We~~----tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 193 EHGVSSVFFLPL-GDHILSCSRDNTIKAWECD----TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred ccceeeEEEEec-CCeeeecccccceeEEecc----cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 999999999765 7899999999999999975 45567789999999999999999999999999999999987543
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
. |...++..+..++...+.|....- .+....+. ...++++.+++.|++|++||+.
T Consensus 268 ~----~k~~lR~hEh~vEci~wap~~~~~------~i~~at~~---------------~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 268 Q----CKAELREHEHPVECIAWAPESSYP------SISEATGS---------------TNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred h----hhhhhhccccceEEEEecccccCc------chhhccCC---------------CCCccEEEeecccceEEEEecc
Confidence 2 223344444444433332221100 00000000 0136789999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++.++.++.+|..+|.+++|||.|+||+|+.+|+++++||++..
T Consensus 323 tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 323 TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 99999999999999999999999999999999999999998643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=214.10 Aligned_cols=203 Identities=29% Similarity=0.505 Sum_probs=176.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||...|.|+++.|-.+++++|+.|+++.|||+.+|++...+.+|-.-|..+++++- -.++++++.|++|+-||+.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe--- 223 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLE--- 223 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEech---
Confidence 699999999999999999999999999999999999999999999999999999754 4588999999999999986
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
..+.++.+.||..+|.+++..|.-..|+|||+|.++|+||+|...
T Consensus 224 -~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~---------------------------------- 268 (460)
T KOG0285|consen 224 -YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA---------------------------------- 268 (460)
T ss_pred -hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----------------------------------
Confidence 346788899999999999999988899999999999999998522
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
.+..+.||......+.| . +-...+++|+.|++|++||+..|+.+.++..|...|.+++.+|....+||+|.| +
T Consensus 269 ~V~~l~GH~~~V~~V~~--~----~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 269 SVHVLSGHTNPVASVMC--Q----PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred eEEEecCCCCcceeEEe--e----cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-c
Confidence 24456666654433322 1 223458999999999999999999999999999999999999999999999987 7
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
|+-|+++..
T Consensus 342 ik~w~~p~g 350 (460)
T KOG0285|consen 342 IKQWKLPEG 350 (460)
T ss_pred ceeccCCcc
Confidence 899998743
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=221.21 Aligned_cols=224 Identities=26% Similarity=0.425 Sum_probs=180.7
Q ss_pred EEccCchhh-ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeE
Q 022074 8 VDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 85 (303)
Q Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~ 85 (303)
|.+|+.|=+ .||+- +.-+|++ ..++|+.+|.++.|+++|.++++|+.+|.|+.|+....... .+.+ |...|.
T Consensus 111 Lltgs~SGEFtLWNg----~~fnFEt-ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk-~~~ahh~eaIR 184 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNG----TSFNFET-ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK-IIQAHHAEAIR 184 (464)
T ss_pred eEeecccccEEEecC----ceeeHHH-HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH-HhhHhhhhhhh
Confidence 456665555 34433 2224433 34899999999999999999999999999999988766543 3444 448999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+++|+| ++..|+|+|.||+|+|||.... +....+.||.-.|.+++|+|.-.+++++|.|..|++||.|...
T Consensus 185 dlafSp-nDskF~t~SdDg~ikiWdf~~~----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~---- 255 (464)
T KOG0284|consen 185 DLAFSP-NDSKFLTCSDDGTIKIWDFRMP----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---- 255 (464)
T ss_pred eeccCC-CCceeEEecCCCeEEEEeccCC----chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc----
Confidence 999987 5778999999999999997632 3455678999999999999999999999999999999988543
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~ 245 (303)
+++++.+|.... + ...|++++.+|+|+|.|..++++|+++.+.+
T Consensus 256 ------------------------------cl~tlh~HKntV--l----~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 256 ------------------------------CLATLHGHKNTV--L----AVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred ------------------------------hhhhhhhccceE--E----EEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 334444444322 2 2336678899999999999999999998999
Q ss_pred EEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeecC
Q 022074 246 AALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 246 ~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~~ 282 (303)
.++.+|+..+++++|+|-. .+|.+|+.||.+..|.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 9999999999999999965 589999999999999987
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=213.11 Aligned_cols=221 Identities=22% Similarity=0.336 Sum_probs=176.8
Q ss_pred cccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 22 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
.+||+=.-......+-|+.||+++.|+.+|.+|++++.|+++.|||..++.....+.-|..+--.+.|.. .+-|++++
T Consensus 259 ~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~ 336 (524)
T KOG0273|consen 259 ARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSS 336 (524)
T ss_pred EEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecC
Confidence 3444333333456789999999999999999999999999999999999987777777877767788953 45799999
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
.|+.++++.+. ..+|...+.||...|.++.|.|.+.+|+|++.|++++||.+......
T Consensus 337 td~~i~V~kv~----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~------------------ 394 (524)
T KOG0273|consen 337 TDGCIHVCKVG----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV------------------ 394 (524)
T ss_pred CCceEEEEEec----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch------------------
Confidence 99999999875 45688899999999999999999999999999999999986532211
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeee-----eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV-----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~ 256 (303)
..+.+|.. .+....++|. .+..+..+++++.|+++++||+..+.++..|..|+.||.
T Consensus 395 ----------------~~l~~Hsk--ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 395 ----------------HDLQAHSK--EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVY 456 (524)
T ss_pred ----------------hhhhhhcc--ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceE
Confidence 11111111 1111122221 123467799999999999999999999999999999999
Q ss_pred EEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 257 DCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 257 ~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|||+++++|+|+.||.+.+|+.+..
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccch
Confidence 9999999999999999999999997643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=203.11 Aligned_cols=233 Identities=28% Similarity=0.414 Sum_probs=177.0
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
-+|.||+.|-.|.. .|...-+-...||+.+|..+.|.+|++.++++|.|.+|+.||+++|+...++..|...|+.+...
T Consensus 63 aSgG~Dr~I~LWnv-~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~ 141 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNV-YGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPS 141 (338)
T ss_pred eecCCcceEEEEec-cccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCcc
Confidence 46788887777765 23322244557999999999999999999999999999999999999999999999999999865
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCC-------------------------------------ccceeecccccCeEE
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKG-------------------------------------KPAGVLMGHLEGITF 133 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~ 133 (303)
.-...++.|++.|++++|||.|...... ...-.+.||.+.|+.
T Consensus 142 rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~ 221 (338)
T KOG0265|consen 142 RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITG 221 (338)
T ss_pred ccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceee
Confidence 4456678899999999999987211000 011123456666666
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecc--cceeeeEE
Q 022074 134 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTLIR 211 (303)
Q Consensus 134 ~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 211 (303)
++.+++|.++++.+-|.++++||+|.. ++..+++..+.|+ .+...+++
T Consensus 222 lsls~~gs~llsnsMd~tvrvwd~rp~------------------------------~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTVRVWDVRPF------------------------------APSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred EEeccCCCccccccccceEEEEEeccc------------------------------CCCCceEEEeecchhhhhhhcce
Confidence 666666666666666666666665531 1223345555554 33345566
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
|.+ +|+++.+..|+.|+.+++||...+..++.+.+|.+.|++++|+|..++|.+++.|.+|.+
T Consensus 272 csw----sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 272 CSW----SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eec----cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 664 457888999999999999999999999999999999999999999999999999999986
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=216.77 Aligned_cols=201 Identities=21% Similarity=0.353 Sum_probs=167.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
--+.+|..+.|.|+|+.|++|+..|-+.||+..+-.....+..|+..|.++.|++ ++.+++||+.+|.|++|+..
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpn---- 168 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPN---- 168 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccc----
Confidence 3457899999999999999999999999998855544445678999999999975 58899999999999999853
Q ss_pred CCccceeecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 117 KGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 117 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...+..++.|. ++|++++|+|.+..|+|++.|++|+|||.+..++..
T Consensus 169 -mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~------------------------------- 216 (464)
T KOG0284|consen 169 -MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER------------------------------- 216 (464)
T ss_pred -hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-------------------------------
Confidence 12244455555 899999999999999999999999999987543211
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
.+.||.-..+.+ +++|...++|+||.|..|++||.++++++.++-+|+..|..+.|+|++++|+|+|.|..
T Consensus 217 ---vL~GHgwdVksv------dWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 217 ---VLRGHGWDVKSV------DWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred ---eeccCCCCccee------ccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 123333222222 35567789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCC
Q 022074 276 VVRWEFPG 283 (303)
Q Consensus 276 i~~Wd~~~ 283 (303)
++++|+..
T Consensus 288 ~kv~DiR~ 295 (464)
T KOG0284|consen 288 CKVFDIRT 295 (464)
T ss_pred EEEEehhH
Confidence 99999873
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=228.77 Aligned_cols=230 Identities=23% Similarity=0.378 Sum_probs=187.6
Q ss_pred CchhhccccccccccCcCc---ccccCCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCce-----E----EEEe
Q 022074 12 SGTMESLANVTEIHDGLDF---SAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKL-----S----LRIL 78 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~-----~----~~~~ 78 (303)
+++-|-.+-+|+. .++.. .-.-.+||+..|.+++++..+ .+++++|.|.++++|++...+. . ....
T Consensus 382 t~sKD~svilWr~-~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 382 TGSKDKSVILWRL-NNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EecCCceEEEEEe-cCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 5677778888888 22211 122238999999999998654 4899999999999999977321 1 1235
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.|+..|++++++| ++++++|||.|+++++|++. ......++.||..+|+++.|++.++.++|+|.|++|+||.+.
T Consensus 461 aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 461 AHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred hhcccccceEecC-CCceEEecccccceeeeccc----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 7999999999975 68899999999999999985 456788999999999999999999999999999999999986
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
... ++.++.||... +.++. |-.++++|++++.||.|++|+
T Consensus 536 ~fS----------------------------------ClkT~eGH~~a--Vlra~----F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 536 TFS----------------------------------CLKTFEGHTSA--VLRAS----FIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred cce----------------------------------eeeeecCccce--eEeee----eeeCCcEEEeccCCCcEEEEe
Confidence 421 35566777532 33333 445789999999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
+++.+++.++.+|++.||+++-+|...+++||+.||.|.+|.-.+..++
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~ 624 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQ 624 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHHHH
Confidence 9999999999999999999999999999999999999999985544333
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=209.36 Aligned_cols=264 Identities=23% Similarity=0.324 Sum_probs=193.6
Q ss_pred cCchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEE
Q 022074 11 GSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC 88 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~ 88 (303)
.+||.|..+-+|++..-.++. --..-||..+|.-+.||||.+++++|+.|..+++||+.+|.....+. +|...+.+++
T Consensus 240 AsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~ 319 (519)
T KOG0293|consen 240 ASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCA 319 (519)
T ss_pred eeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeE
Confidence 578889999999997777643 22335999999999999999999999999999999999998654433 2346788999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
|.| ++..+++|+.|+++..||+.. .......+-. -.|..++..+||+++++...|..+++++..........+
T Consensus 320 W~p-Dg~~~V~Gs~dr~i~~wdlDg-----n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis 393 (519)
T KOG0293|consen 320 WCP-DGFRFVTGSPDRTIIMWDLDG-----NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS 393 (519)
T ss_pred Ecc-CCceeEecCCCCcEEEecCCc-----chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc
Confidence 976 588999999999999999752 2233333433 348899999999999999999999999875432211111
Q ss_pred cCccceeeec------eeeeCCCCCccccCCCC-CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 168 LGFRSYEWDY------RWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 168 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
.......+.+ ......++...+....+ ..+..+.||..-..+++.+|.- .+.+++++|++|+.|+||+-.
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg---~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG---GNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC---CCcceEEecCCCceEEEEEcc
Confidence 1000001110 01111122222221112 2345567777666677766543 355899999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
+|+++.++.+|...|++|+|+|..+ ++||||+||+|++|.+..
T Consensus 471 sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 471 SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999876 899999999999998753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=198.79 Aligned_cols=237 Identities=23% Similarity=0.313 Sum_probs=182.2
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-EEEEecccCC
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 83 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~~h~~~ 83 (303)
|++.+-|-.+.-.++....+...++.--....||+..|+.+.|+|+|..+++|+.|..|.||++..... ...+.+|.+.
T Consensus 13 v~~a~~~~~q~s~~~~~~~rts~l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA 92 (338)
T KOG0265|consen 13 VYPAKRGRSQISALALGKQRTSSLQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA 92 (338)
T ss_pred eEecccccccchhhhhcccccccccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce
Confidence 445555544444555444444444332333479999999999999999999999999999999765432 3457799999
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~ 162 (303)
|..+.|+. +++.++|++.|.+|+.||.+ +++.+..+.+|..-|+++....-|.. +.|++.|+++|+||+|+...
T Consensus 93 VM~l~~~~-d~s~i~S~gtDk~v~~wD~~----tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~ 167 (338)
T KOG0265|consen 93 VMELHGMR-DGSHILSCGTDKTVRGWDAE----TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA 167 (338)
T ss_pred eEeeeecc-CCCEEEEecCCceEEEEecc----cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence 99999975 57899999999999999976 56677788899999999886655655 56788999999999996432
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
...... . + .+. ...|..++..+.+|+-|+.|++||++..
T Consensus 168 ~~t~~~-------------------------k-----y-------qlt----Av~f~d~s~qv~sggIdn~ikvWd~r~~ 206 (338)
T KOG0265|consen 168 IKTFEN-------------------------K-----Y-------QLT----AVGFKDTSDQVISGGIDNDIKVWDLRKN 206 (338)
T ss_pred hhcccc-------------------------c-----e-------eEE----EEEecccccceeeccccCceeeeccccC
Confidence 211100 0 0 000 1113345677899999999999999999
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
+.+..+++|.++|+.+..||+|.++.|-++|+++++||++.-+.+
T Consensus 207 d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 207 DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 999999999999999999999999999999999999998754433
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=202.01 Aligned_cols=237 Identities=20% Similarity=0.324 Sum_probs=181.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||..+|++..++.+....++++.|-+.+|||.-+|.... ...|+.-|.+++|+ .+.+.|++|+.+.-+|+||+.
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelh-sf~hkhivk~~af~-~ds~~lltgg~ekllrvfdln--- 130 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-SFEHKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLN--- 130 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-hhhhhheeeeEEec-ccchhhhccchHHHhhhhhcc---
Confidence 3999999999999999999999999999999999998765 34688899999996 567899999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
....+...+.+|..+|..+-|...++.|++++.|++||+||.|......+..+... +..+++.+++..+......
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEEecCc
Confidence 23345567889999999999999999999999999999999998765544332211 1122333333333322222
Q ss_pred cceEEecccce-ee---eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEE
Q 022074 196 SVATYKGHSVL-RT---LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 196 ~~~~~~~~~~~-~~---~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~ 270 (303)
.+.-++...+- .+ +..-..+...+|+...+++|++|..++.||..+++.+..+ ++|.+||.++.|||||...|+|
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred eeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 22222222110 00 0001112345677889999999999999999999998886 8999999999999999999999
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
|+||+|++|..-
T Consensus 286 SEDGTirlWQt~ 297 (334)
T KOG0278|consen 286 SEDGTIRLWQTT 297 (334)
T ss_pred CCCceEEEEEec
Confidence 999999999864
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=217.74 Aligned_cols=203 Identities=31% Similarity=0.505 Sum_probs=170.8
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
|..+|.++.|+++|+.+++++.|+.+++|++.+.. +...+.+|...|+.++|++ +++++++++.|+++++||+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~--- 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK--- 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc---
Confidence 37899999999999999999999999999997776 5556678999999999975 57899999999999999973
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.......++.+|...|++++|+++++++++|+.|++||+||++...
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~---------------------------------- 279 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE---------------------------------- 279 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe----------------------------------
Confidence 2345677889999999999999999999999999999999987522
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCC--CeEEEEECCCCCeEEEEe
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTS--PVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~--~I~~v~~sp~~~~las~s 271 (303)
.+..+.+|..... ...|++++.+|++++.|+.|++||+.+++ .+..+..+.. +++.+.|+|++.+++++.
T Consensus 280 ~~~~l~~hs~~is------~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 280 CVRKLKGHSDGIS------GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred EEEeeeccCCceE------EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 2233444442221 12477899999999999999999999998 4566766655 499999999999999999
Q ss_pred CCCCEEEeecCCC
Q 022074 272 WDGDVVRWEFPGN 284 (303)
Q Consensus 272 ~Dg~i~~Wd~~~~ 284 (303)
.|+.+++||+...
T Consensus 354 ~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 354 LDRTLKLWDLRSG 366 (456)
T ss_pred CCCeEEEEEccCC
Confidence 9999999998743
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=188.73 Aligned_cols=207 Identities=20% Similarity=0.343 Sum_probs=168.9
Q ss_pred CCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCc-eEEE--E-ecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 35 DGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-LSLR--I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~-~~~~--~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
..||..++..++|+|- |..|++||.|..||+|++..+. ...+ + .+|+..|..++|+| .+++|++||.|.++.||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIW 88 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEEe
Confidence 3799999999999998 8899999999999999998432 2222 1 26899999999964 68999999999999999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.....+ -+....+.||...|.+++|+++|++|||+++|++|=+|....... +
T Consensus 89 ~k~~~e--fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE------------f-------------- 140 (312)
T KOG0645|consen 89 KKEDGE--FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE------------F-------------- 140 (312)
T ss_pred ecCCCc--eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc------------E--------------
Confidence 754222 234667889999999999999999999999999999998763221 1
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC---CeEEEEeecCCCCeEEEEECCCCCe
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---GEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~---~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
.++..+++|....+... ++|...+|++++.|.+|++|+-.. -+++.++.+|+..|++++|+|.|..
T Consensus 141 -----ec~aVL~~HtqDVK~V~------WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~r 209 (312)
T KOG0645|consen 141 -----ECIAVLQEHTQDVKHVI------WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSR 209 (312)
T ss_pred -----EEEeeeccccccccEEE------EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCce
Confidence 13455666665444433 456678999999999999998762 2578899999999999999999999
Q ss_pred EEEEeCCCCEEEeec
Q 022074 267 LVSSSWDGDVVRWEF 281 (303)
Q Consensus 267 las~s~Dg~i~~Wd~ 281 (303)
|++++.|+++++|..
T Consensus 210 l~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 210 LVSCSDDGTVSIWRL 224 (312)
T ss_pred EEEecCCcceEeeee
Confidence 999999999999983
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=213.48 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=157.6
Q ss_pred CCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCc-------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 35 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
..||+.+|.+++|+| +++.|++|+.|++|+|||+.++. ....+.+|...|.+++|+|..+++|++++.|++|
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 469999999999999 88999999999999999997653 3456788999999999987656799999999999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
++||++ .+.....+.+|.+.|.+++|++++.+|++++.|++|++||++....
T Consensus 151 rIWDl~----tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~------------------------ 202 (493)
T PTZ00421 151 NVWDVE----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI------------------------ 202 (493)
T ss_pred EEEECC----CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE------------------------
Confidence 999986 3345566788999999999999999999999999999999985321
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe----CCCeEEEEECCCCeE-EEEeecC-CCCeEEEEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS----HDSCVYVYDLVSGEQ-VAALKYH-TSPVRDCSW 260 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~----~dg~i~iwd~~~~~~-~~~~~~h-~~~I~~v~~ 260 (303)
+..+.+|.... ..++. +.+++..+++++ .|+.|++||+++.+. +.....+ ...+....|
T Consensus 203 ----------v~tl~~H~~~~-~~~~~----w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~ 267 (493)
T PTZ00421 203 ----------VSSVEAHASAK-SQRCL----WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF 267 (493)
T ss_pred ----------EEEEecCCCCc-ceEEE----EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE
Confidence 11122221100 01122 334444555543 589999999987653 4433333 345667789
Q ss_pred CCCCCeEEEEe-CCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s-~Dg~i~~Wd~~~~ 284 (303)
++++++|++++ .|++|++||+...
T Consensus 268 d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 268 DEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 99999988887 5999999998743
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=214.44 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=168.3
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++||-..+.+++++|||+.+++|+.||.|+|||...+-...++..|+..|+.+.|+ ..++.++|++.||+||.||+.-.
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeeccc
Confidence 47999999999999999999999999999999999998888999999999999996 56889999999999999996310
Q ss_pred ----------------------------------------cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 115 ----------------------------------------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 115 ----------------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
-++++....+.||.++|.+++|++++..|++++.|++||+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 0123344567899999999999999999999999999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
||+-.... .+.++.- ..-.....|+|+|+.+|++..||.|
T Consensus 505 W~if~s~~---------------------------------~vEtl~i-------~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 505 WDIFSSSG---------------------------------TVETLEI-------RSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred EEeeccCc---------------------------------eeeeEee-------ccceeEEEEcCCCCeEEEEEecceE
Confidence 99732110 0011100 0001123478899999999999999
Q ss_pred EEEECCCCeEEEEeec--------------------CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 235 YVYDLVSGEQVAALKY--------------------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~--------------------h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+||.+.+..+..+++ ...+.+.+++|+||..+++||+...|.+++++.
T Consensus 545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 9999987765544432 235799999999999999999999999999863
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=211.85 Aligned_cols=236 Identities=14% Similarity=0.178 Sum_probs=167.6
Q ss_pred EEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCc--------eEEE
Q 022074 6 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK--------LSLR 76 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~--------~~~~ 76 (303)
.+.+++.|.+...+.+|..-+. .......||..+|.+++|+|+ ++.|++|+.|++|+|||+.++. ....
T Consensus 43 ~~w~~~gGG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 43 VPWEVEGGGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred EEEEcCCCCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 3555666666666666654322 212334799999999999996 7899999999999999998642 1234
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
+.+|...|.+++|+|....+|++++.|++|++||++.. .....+ .|...|.+++|+++|.+|++++.|+.|++||
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg----~~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE----KRAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC----cEEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEE
Confidence 67899999999998765556789999999999998632 222233 2567899999999999999999999999999
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC----
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---- 232 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---- 232 (303)
+|.... +..+.+|..... .++.+...|++++.+++++|.|+
T Consensus 196 ~Rsg~~----------------------------------i~tl~gH~g~~~-s~~v~~~~fs~d~~~IlTtG~d~~~~R 240 (568)
T PTZ00420 196 PRKQEI----------------------------------ASSFHIHDGGKN-TKNIWIDGLGGDDNYILSTGFSKNNMR 240 (568)
T ss_pred CCCCcE----------------------------------EEEEecccCCce-eEEEEeeeEcCCCCEEEEEEcCCCCcc
Confidence 985321 112223321111 11112223567788889887764
Q ss_pred eEEEEECCC-CeEEEEeec--CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 233 CVYVYDLVS-GEQVAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 233 ~i~iwd~~~-~~~~~~~~~--h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|+|||+++ .+.+..+.. +.+.+.-...++++.++++|+.|++|++|++..
T Consensus 241 ~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 241 EMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 799999985 455555433 334444555566789999999999999999854
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=215.74 Aligned_cols=223 Identities=22% Similarity=0.316 Sum_probs=182.9
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.+...||+-.|.+++-..+|..|++||.|.++++|.++.+.. .....+|+..|.+++.+......|+++|.|++++
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 335689999999999667889999999999999999855542 2345689999999999776788999999999999
Q ss_pred EEcCccccCCCccce-----eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 108 VWDRRCLNVKGKPAG-----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 108 lWd~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
+|++..-..+..+.. ....|...|++++++|++.+++|||.|++.+||++...
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---------------------- 495 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---------------------- 495 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc----------------------
Confidence 999863111111111 12358888999999999999999999999999998521
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+...++.||. +..|+..|++..+.++|+|.|++|+||.+.++.++++|++|+..|..+.|-.
T Consensus 496 ------------~l~~vLsGH~------RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~ 557 (775)
T KOG0319|consen 496 ------------RLLGVLSGHT------RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR 557 (775)
T ss_pred ------------eEEEEeeCCc------cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee
Confidence 1244666765 3445667888899999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCEEEeecCCCCccCCCCcccc
Q 022074 263 SQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKR 295 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~~ 295 (303)
++.+|+|++.||.+++|+++.+ ++...++.++
T Consensus 558 ~~~qliS~~adGliKlWnikt~-eC~~tlD~H~ 589 (775)
T KOG0319|consen 558 NGKQLISAGADGLIKLWNIKTN-ECEMTLDAHN 589 (775)
T ss_pred CCcEEEeccCCCcEEEEeccch-hhhhhhhhcc
Confidence 9999999999999999999765 6666666553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=225.40 Aligned_cols=231 Identities=22% Similarity=0.362 Sum_probs=178.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
+.++++|..+.||++-+|... ....+|+.+|.+++|+| ++..|++|+.|++|++||+.++.....+..+ ..+.++.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQ 624 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEE
Confidence 446778888999988655432 23478999999999996 7899999999999999999988776666544 6789999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|.+++++.|++|+.|++|++||++.. ..+...+.+|...|.++.|. ++.+|++++.|++|++||++......
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~---~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~---- 696 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNP---KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI---- 696 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCC---CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc----
Confidence 97777899999999999999998632 22455677899999999996 67899999999999999986421000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
....+..+.+|...... ..+++++.+|++|+.|+.|++|+......+..+
T Consensus 697 ------------------------~~~~l~~~~gh~~~i~~------v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 697 ------------------------NETPLHSFMGHTNVKNF------VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred ------------------------CCcceEEEcCCCCCeeE------EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 01123344555432221 236678899999999999999998765433221
Q ss_pred -------------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 249 -------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 249 -------------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
..|...|.+++|+|++++|++|+.||+|++|++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234567999999999999999999999999985
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=191.90 Aligned_cols=237 Identities=22% Similarity=0.323 Sum_probs=178.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC-CcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.+|..+|.+++.+ |.++++||.|.+|+|||++.......+..|.+.++++.|.++. .+.|++|+.||.|.+|+...
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~- 116 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS- 116 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-
Confidence 6899999999987 7899999999999999999988888888999999999996653 34788999999999999763
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+.+|...|+.++++|.+.+.++.|.|+.+|+|||-..+..+.+++..... .+.+.+.+..+.....
T Consensus 117 ---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-----~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 117 ---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-----LVSWSPQGDHFVVSGR 188 (362)
T ss_pred ---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-----eeEEcCCCCEEEEEec
Confidence 34567788999999999999999999999999999999998765544443321110 1223333332222222
Q ss_pred CcceEEeccc--cee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE--CCCCCeE
Q 022074 195 QSVATYKGHS--VLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW--HPSQPML 267 (303)
Q Consensus 195 ~~~~~~~~~~--~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~--sp~~~~l 267 (303)
+.+..++-.. ... .-.+.+.. .| -++.+|++|+.|+.|++||......+..+.+|+.+|.++.+ .|.+.+|
T Consensus 189 ~~i~i~q~d~A~v~~~i~~~~r~l~~-~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIENPKRILCA-TF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred cEEEEEecccHhHhhhhhccccceee-ee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 2222222111 000 00011111 11 25678999999999999999998899999999999999995 5678899
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
+|+|.||.|++||+....
T Consensus 267 vTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMET 284 (362)
T ss_pred EEeccCceEEEEEccccc
Confidence 999999999999998663
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=185.58 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=162.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCe
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 131 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v 131 (303)
-+|+++|.|-+||+|.+.+|....++...+..|+.+...|+ .+.|++++ ...||+||+++.++ .|+..+.+|...|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~-~qhvRlyD~~S~np--~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAAAG-NQHVRLYDLNSNNP--NPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhhcc-CCeeEEEEccCCCC--CceeEEeccCCce
Confidence 47999999999999999999988777777789999999764 55666555 56899999986543 4788999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee-eCCCCCccccCCCCCcceEEecccc--eee
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM-DYPPQARDLKHPCDQSVATYKGHSV--LRT 208 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 208 (303)
+++.|..+|+.++|||.||++||||+|.+...-.+... ..+..+ ..|.++..+......-+..++-... ...
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-----spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-----SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-----CCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 99999999999999999999999999974332211111 011111 1122222222222222333321110 000
Q ss_pred e----EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe------EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 209 L----IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 209 ~----~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~------~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
. .....+....+||++++.+...|.+++|++-+.+ ++..+++|++-|..+-+|||+++||++|.|.++++
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 0 0111223356899999999999999999987653 45567899999999999999999999999999999
Q ss_pred eecCCC
Q 022074 279 WEFPGN 284 (303)
Q Consensus 279 Wd~~~~ 284 (303)
|+....
T Consensus 242 wn~~~~ 247 (311)
T KOG0315|consen 242 WNTDDF 247 (311)
T ss_pred EecCCc
Confidence 998765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=194.40 Aligned_cols=200 Identities=26% Similarity=0.375 Sum_probs=173.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||+..|.++.|-|.|.++++++.|.+|+.||..++-...++.+|..-|..+..+ .++.++++++.|.+|++|-..
T Consensus 190 ~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~-~DGti~As~s~dqtl~vW~~~--- 265 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN-QDGTIIASCSNDQTLRVWVVA--- 265 (406)
T ss_pred cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec-CCeeEEEecCCCceEEEEEec---
Confidence 5999999999999999999999999999999999999999999999999999986 568999999999999999864
Q ss_pred CCCccceeecccccCeEEEEeCCC---------------CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGD---------------GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~---------------~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+......+.+|...|.+++|.|. +.++.+++.|++||+||+...
T Consensus 266 -t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-------------------- 324 (406)
T KOG0295|consen 266 -TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-------------------- 324 (406)
T ss_pred -cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--------------------
Confidence 22234456778888888877432 358999999999999998532
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
.++.++.||.... ....|+|.|+||+++.+|+++++||++++++++.++.|+.-+++++|
T Consensus 325 --------------~cL~tL~ghdnwV------r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 325 --------------MCLFTLVGHDNWV------RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred --------------eEEEEEeccccee------eeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 2455666665432 23458899999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCCEEEee
Q 022074 261 HPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd 280 (303)
+.+.++++||+-|.++++|.
T Consensus 385 h~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 385 HKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCCCceEEeccccceeeeee
Confidence 99999999999999999997
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=199.06 Aligned_cols=262 Identities=23% Similarity=0.328 Sum_probs=196.9
Q ss_pred CchhhccccccccccCc-----CcccccC-CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCe
Q 022074 12 SGTMESLANVTEIHDGL-----DFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDV 84 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v 84 (303)
+||-|..|.||.-.+|+ +.+++|. -=|+.+|.|++||.|.+.+++|+.||.|++|.+.+|+...++. +|+.+|
T Consensus 230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGv 309 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGV 309 (508)
T ss_pred eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCe
Confidence 67889999999999997 4445453 3678899999999999999999999999999999998777766 799999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+|+.|+. ++..+++++.|.++|+--++ .++....+.||+.-|+-..|.++|+.+++++.|++|++|+.....+..
T Consensus 310 t~l~FSr-D~SqiLS~sfD~tvRiHGlK----SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~ 384 (508)
T KOG0275|consen 310 TCLSFSR-DNSQILSASFDQTVRIHGLK----SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS 384 (508)
T ss_pred eEEEEcc-CcchhhcccccceEEEeccc----cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhh
Confidence 9999975 46688899999999998775 455677889999999999999999999999999999999987654433
Q ss_pred ccccCccceeeeceeee-CCCCCccccCC-CCCcc--eEEecccceeee----EE-EeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 165 SCNLGFRSYEWDYRWMD-YPPQARDLKHP-CDQSV--ATYKGHSVLRTL----IR-CHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~----~~-~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
.+.-. +-+..+.... +|-+...+..+ ..+.+ ..++|....... .. ...+...||.|.++.+.++|+.++
T Consensus 385 Tfk~~--~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlY 462 (508)
T KOG0275|consen 385 TFKPL--GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLY 462 (508)
T ss_pred hccCC--CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEE
Confidence 32211 1111111111 12111111111 11111 122221110000 00 011233578899999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+...+|++..++..|+..+-.++-+|..+.|||=++||.+++|.
T Consensus 463 CF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 463 CFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999999999999999999999996
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=191.56 Aligned_cols=259 Identities=19% Similarity=0.267 Sum_probs=187.6
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
.|.=|-++.||++.+|.. +-...||+-.|.++.||.+|.+||+|+.+|.|+||+..++.....+...-..+.=+.|+|
T Consensus 81 TGGgDD~AflW~~~~ge~--~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp 158 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGEF--AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP 158 (399)
T ss_pred ecCCCceEEEEEccCCcc--eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc
Confidence 344568999999999883 335599999999999999999999999999999999999988877765556677778876
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc---
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL--- 168 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~--- 168 (303)
-+..|+.|+.||.+-+|.+. +......+.||..++++=.|.|+|+.++++..|++|++||+....+....+.
T Consensus 159 -~a~illAG~~DGsvWmw~ip----~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 159 -RAHILLAGSTDGSVWMWQIP----SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred -cccEEEeecCCCcEEEEECC----CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 68899999999999999874 2245678999999999999999999999999999999999875322111110
Q ss_pred -Cccceeee------------------------ceeeeCC--CC--------------------CccccCC-CCCcceEE
Q 022074 169 -GFRSYEWD------------------------YRWMDYP--PQ--------------------ARDLKHP-CDQSVATY 200 (303)
Q Consensus 169 -~~~~~~~~------------------------~~~~~~~--~~--------------------~~~~~~~-~~~~~~~~ 200 (303)
........ +.....+ |. .+..+.. .+..+..+
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEE
Confidence 00000000 0000000 00 0000000 01111111
Q ss_pred eccc-cee-------eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC
Q 022074 201 KGHS-VLR-------TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 201 ~~~~-~~~-------~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
+-.. ..+ .+.++. |-+ ..+|++++.+|.|+.||.++|+++.++.+|..+|.+++.+|++++++|+|.
T Consensus 314 D~a~~~~R~~c~he~~V~~l~----w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 314 DLAASTLRHICEHEDGVTKLK----WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ecccchhheeccCCCceEEEE----EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 1100 000 011111 223 468999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecC
Q 022074 273 DGDVVRWEFP 282 (303)
Q Consensus 273 Dg~i~~Wd~~ 282 (303)
|++.++|+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999975
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=188.51 Aligned_cols=202 Identities=22% Similarity=0.381 Sum_probs=160.4
Q ss_pred cceEEEEEcCC-CCEEEEeeCCCeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 40 FGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 40 ~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.+++.++|+++ .+.+++++.||+++|||+... ..+..++.|...|.++-|++.....++++|+|++|+|||.. .
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~----r 136 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN----R 136 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC----C
Confidence 46999999975 568999999999999997543 34456788999999999988878889999999999999953 3
Q ss_pred CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
...+.++.||...|....|+| ..+++++++.|+++++||+|..-. .
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~------------------------------ 183 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---F------------------------------ 183 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---e------------------------------
Confidence 345678999999999999988 578999999999999999875311 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEeCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDG 274 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg 274 (303)
..+..|.. .++.|-++- .+...|+||+.|+.|++||+++.+ ++.++.+|.-.|..++|||.. .+|||++.|.
T Consensus 184 -~~i~ah~~--Eil~cdw~k---y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 184 -MSIEAHNS--EILCCDWSK---YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred -eEEEeccc--eeEeecccc---cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 00111211 122232221 245789999999999999998754 588899999999999999986 5899999999
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++||....
T Consensus 258 T~riw~~~~~ 267 (311)
T KOG0277|consen 258 TVRIWDPERQ 267 (311)
T ss_pred eEEecccccc
Confidence 9999998644
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-27 Score=188.74 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=167.0
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.-|+..|+++.|++ +++.++++|+|++|+||+....+.+.++.+|...|....|+|..+++|+++|.|+++++||++..
T Consensus 101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 47999999999997 56678899999999999999998888999999999999999988999999999999999998743
Q ss_pred cCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
++..- +..|...+.+++|+. +.+.++||+.|+.||.||+|..+.
T Consensus 181 ---gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~------------------------------- 225 (311)
T KOG0277|consen 181 ---GKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT------------------------------- 225 (311)
T ss_pred ---CceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc-------------------------------
Confidence 34343 567888899999886 556789999999999999997532
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEe
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSS 271 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s 271 (303)
.+..+.||....- +..++|- ...+||+++.|-+++|||...++ .+.+.+.|+.-+..++||+.. .++|+.+
T Consensus 226 --pl~eL~gh~~AVR--kvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 226 --PLFELNGHGLAVR--KVKFSPH---HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred --cceeecCCceEEE--EEecCcc---hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 2445556654322 2233331 24679999999999999998654 356678899999999999964 5899999
Q ss_pred CCCCEEEeec
Q 022074 272 WDGDVVRWEF 281 (303)
Q Consensus 272 ~Dg~i~~Wd~ 281 (303)
.|..+.+|+.
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=206.56 Aligned_cols=201 Identities=23% Similarity=0.519 Sum_probs=164.9
Q ss_pred cceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
++|.+++|+..|++|+.|+. -|.+-||+.....-+.+.++|...+++++++| +++++++|+.||.|++||.. .+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~----Sg 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQ----SG 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEecc----Cc
Confidence 46999999999999999875 48999999999888888899999999999975 58999999999999999964 44
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....+|..|+.+|+.+.|...++.+++.+-||+||.||+.+-.. ++.+. .| . .+
T Consensus 383 fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-------fRTft-------~P-~----------p~- 436 (893)
T KOG0291|consen 383 FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-------FRTFT-------SP-E----------PI- 436 (893)
T ss_pred eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-------eeeec-------CC-C----------ce-
Confidence 55678999999999999999999999999999999999864221 11100 00 0 00
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
.. .+....|.|.++..|+.|. .|++|+.++|+++-.+++|++||.+++|+|++..|||+|+|.+++
T Consensus 437 ----------Qf---scvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVR 503 (893)
T KOG0291|consen 437 ----------QF---SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVR 503 (893)
T ss_pred ----------ee---eEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEE
Confidence 00 0111235577777777665 599999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
+||+-..
T Consensus 504 iW~if~s 510 (893)
T KOG0291|consen 504 IWDIFSS 510 (893)
T ss_pred EEEeecc
Confidence 9997544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=183.66 Aligned_cols=238 Identities=20% Similarity=0.242 Sum_probs=178.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|..+|.++.|+.||++.++++.|.+|+||+...+.++++..+|...|..++.+.+ +..|++|+.|..|.+||..
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~--- 89 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVN--- 89 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcc---
Confidence 477889999999999999999999999999999999999999999999999988654 5678899999999999985
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC-ccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA-RDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 194 (303)
+++..+.+.+|...|+.+.|+.+...+++|+.|.++|+||-|.........+..... .+. ...... ..+....+
T Consensus 90 -TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D--~V~--Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 90 -TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD--GVS--SIDVAEHEIVAGSVD 164 (307)
T ss_pred -cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC--cee--EEEecccEEEeeccC
Confidence 667888999999999999999999999999999999999998654322221110000 000 000000 11111122
Q ss_pred CcceEEecccc---eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC--CeEEEEECCCCCeEEE
Q 022074 195 QSVATYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVS 269 (303)
Q Consensus 195 ~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~--~I~~v~~sp~~~~las 269 (303)
..+.+++-... ..+.-.-..+..|+++++.++.++.|+++++.|-++|++++.+++|.. .=.+++++.....+++
T Consensus 165 GtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred CcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 22222221100 000000012345889999999999999999999999999999999975 3457788888889999
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
||+||.+.+||+-
T Consensus 245 gSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 245 GSEDGKVYFWDLV 257 (307)
T ss_pred ccCCceEEEEEec
Confidence 9999999999975
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=212.18 Aligned_cols=229 Identities=23% Similarity=0.326 Sum_probs=178.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|++||..+.|+|++..+++|+.|-+|++|+.++.+...++.+|.+-|..+.|++. -.+++|+|.|.+||+|+..
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwq---- 123 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQ---- 123 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEecc----
Confidence 79999999999999999999999999999999999998999999999999999876 4589999999999999974
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC-
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ- 195 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 195 (303)
....+.++.||..-|.|..|+|...+++|+|-|.+||+||+..++....... +.+-..+. .+....+....+.
T Consensus 124 sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg---~~e~~~~~---~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG---SLEDQMRG---QQGNSDLFGQTDAV 197 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC---Cchhhhhc---cccchhhcCCcCee
Confidence 4566888999999999999999888999999999999999875433221111 11100000 0000111111111
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
....+.||.. .....+|+|.-.++++|+.|..|++|....-+ ++-+..+|..+|.++-|+|....++|.|+|
T Consensus 198 VK~VLEGHDR------GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED 271 (1202)
T KOG0292|consen 198 VKHVLEGHDR------GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED 271 (1202)
T ss_pred eeeeeccccc------ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC
Confidence 1233455542 22334577777899999999999999985433 355667999999999999999999999999
Q ss_pred CCEEEeecC
Q 022074 274 GDVVRWEFP 282 (303)
Q Consensus 274 g~i~~Wd~~ 282 (303)
++|++||..
T Consensus 272 ksirVwDm~ 280 (1202)
T KOG0292|consen 272 KSIRVWDMT 280 (1202)
T ss_pred ccEEEEecc
Confidence 999999974
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=193.81 Aligned_cols=250 Identities=22% Similarity=0.324 Sum_probs=176.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.-|.-=|+|+.|+|||+++++.+.||++.+||-+++.....+. +|++.|.++.|+|+ .+.|+|++.|.++++||..
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD-s~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD-STQFLTVSADKTIKIWDVS 265 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC-CceEEEecCCceEEEEEee
Confidence 4677789999999999999999999999999999999888877 89999999999764 7899999999999999964
Q ss_pred cccC---------------------------------------CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 113 CLNV---------------------------------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 113 ~~~~---------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.... ...+...+.||..+|+++..++++.+|++|+.||.|.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 2111 0123445679999999999999999999999999999
Q ss_pred EEEcccccCCccc-----c----------cCccceeee--ceee-------------eCCCCCccccCCCC---------
Q 022074 154 LWDIRKMSSNASC-----N----------LGFRSYEWD--YRWM-------------DYPPQARDLKHPCD--------- 194 (303)
Q Consensus 154 lWdl~~~~~~~~~-----~----------~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~--------- 194 (303)
-||.......... + .......|+ ++.. +++.+.+.+....+
T Consensus 346 ~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 346 SWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACI 425 (603)
T ss_pred EEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEec
Confidence 9998764321100 0 001111122 0111 11111111111111
Q ss_pred CcceEEecccceeee-EEEe-eeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 195 QSVATYKGHSVLRTL-IRCH-FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~-~~~~-~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
..+..++........ +... ...+++|+++++|.|++|+.+++|.+..++. ...+..|.++|++++||||+.+||++
T Consensus 426 ~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 426 SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred CcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence 111111111111110 0111 1234789999999999999999999975442 33456799999999999999999999
Q ss_pred eCCCCEEEeecCCCCc
Q 022074 271 SWDGDVVRWEFPGNGE 286 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~~~ 286 (303)
+..+.+.+||++...+
T Consensus 506 Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 506 DASRKVVLYDVASREV 521 (603)
T ss_pred ccCCcEEEEEcccCce
Confidence 9999999999886544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=205.88 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=169.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.||.++.|-+..+++++|+.|..||||+..++..+..+.+|.+-+.+++.+|.. .+++|+|.|-+|++||.. ....
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we---~~wa 131 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWE---NEWA 131 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeecc---Ccee
Confidence 479999999999999999999999999999999999999999999999998754 488899999999999974 3445
Q ss_pred cceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 120 PAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....+.||..-|..++|+| |.+.+++++-|++|++|.+....++ .
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----------------------------------f 177 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----------------------------------F 177 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----------------------------------e
Confidence 5678999999999999998 4578999999999999998653332 2
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
+++||..-..++.... -.|..+|++|+.|.+|+|||..+..++.++++|...|..+.|+|.-++++|||+||++++
T Consensus 178 Tl~gHekGVN~Vdyy~----~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvri 253 (794)
T KOG0276|consen 178 TLEGHEKGVNCVDYYT----GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRI 253 (794)
T ss_pred eeeccccCcceEEecc----CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEE
Confidence 3344432222222111 134569999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 022074 279 WEFP 282 (303)
Q Consensus 279 Wd~~ 282 (303)
|.-.
T Consensus 254 Whs~ 257 (794)
T KOG0276|consen 254 WNSK 257 (794)
T ss_pred ecCc
Confidence 9843
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-26 Score=180.63 Aligned_cols=250 Identities=23% Similarity=0.379 Sum_probs=187.9
Q ss_pred ccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 19 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+..|.-++|-=. -.+.||...|..++.+.|...+++|+.|..|.+||+.+|+...++.+|.+.|+.++|+ +....++
T Consensus 41 vrLWNp~rg~li--ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN-eesSVv~ 117 (307)
T KOG0316|consen 41 VRLWNPLRGALI--KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN-EESSVVA 117 (307)
T ss_pred EEeeccccccee--eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEec-CcceEEE
Confidence 344545444322 3568999999999999999999999999999999999999999999999999999996 5678999
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc-cCccceeeec
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN-LGFRSYEWDY 177 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~~~~~~~~~ 177 (303)
||+.|.++++||-|+. ..+|++.+....+.|.++.+. ++.|++|+.||++|.||+|.......+. .+..+..+..
T Consensus 118 SgsfD~s~r~wDCRS~--s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 118 SGSFDSSVRLWDCRSR--SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSK 193 (307)
T ss_pred eccccceeEEEEcccC--CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecC
Confidence 9999999999998754 446788888888999999874 5689999999999999999764432211 0011111110
Q ss_pred e-ee----eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 178 R-WM----DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 178 ~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
. .+ ......+.+--.....+..++||....+-..|.+.. ....+++|++||.+++||+.....+..+..|.
T Consensus 194 d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q----sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 194 DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ----SDTHVFSGSEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc----cceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence 0 00 000111111112233466788898888777777654 35679999999999999999999998898888
Q ss_pred CC-eEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 253 SP-VRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 253 ~~-I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.. |.+++++|.-.-|.++.. +....|.
T Consensus 270 ~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 270 TVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ceeEEeeecccCccceeEecC-Cceecee
Confidence 87 999999999887777764 4555665
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=186.03 Aligned_cols=256 Identities=28% Similarity=0.410 Sum_probs=187.0
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 93 (303)
+.+..+.+|+.-++... ....+|..++.++.|+++++.+++++.||.|++||+.+++....+..|...+.++.|.++
T Consensus 28 ~~~g~i~i~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~- 104 (289)
T cd00200 28 SGDGTIKVWDLETGELL--RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD- 104 (289)
T ss_pred ecCcEEEEEEeeCCCcE--EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-
Confidence 34677888887555422 234688999999999999999999999999999999988777778889889999999764
Q ss_pred CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
++++++++.|+.+++||++ ..+....+..|...+.++.+++++.++++++.|+.+++||++.......... .
T Consensus 105 ~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----~ 176 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVE----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----H 176 (289)
T ss_pred CCEEEEecCCCeEEEEECC----CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----C
Confidence 6788888889999999975 2344556667888999999999988888888899999999975433222111 1
Q ss_pred eeeceeeeCCCCCccccC-CCCCcceEEecccc-eeeeE----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE
Q 022074 174 EWDYRWMDYPPQARDLKH-PCDQSVATYKGHSV-LRTLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~ 247 (303)
...+..+.+.+....+.. ..+..+..++-... ..... .......+++++.++++++.||.|++||..+++.+..
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 111222333333322211 11223333322110 00000 0112344677888888888899999999999888888
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+..|..+|.+++|+|++++|++++.|+.+++|+
T Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 889999999999999999999999999999996
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=180.44 Aligned_cols=273 Identities=18% Similarity=0.237 Sum_probs=186.0
Q ss_pred EEEE---EccCchhhccccccccccCcCcc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEE
Q 022074 5 VHIV---DVGSGTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRI 77 (303)
Q Consensus 5 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~ 77 (303)
.||. ++-+++-|-.+.+|+.--|.... ..-+.||+..|.+++|+|.|++|+++|.|.++.||.-..+. ....+
T Consensus 22 whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 22 WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee
Confidence 4555 67778888888888875444443 23335999999999999999999999999999999776554 34568
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+|...|.+++|+ .++++|++++.|++|-+|..... .+-.....++.|.-.|..+.|+|...+|+++|.|.+|++|+-
T Consensus 102 EGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~ded-dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 102 EGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDED-DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred eccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCC-CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEee
Confidence 8999999999996 56999999999999999987521 223456678999999999999999899999999999999975
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEecccceee-eEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRT-LIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
... ....+...+...+.++-...|.+.+..+.... +..+..+.....+.. ..+-.+...+. ...+++++.|+.|+
T Consensus 180 ~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~ 256 (312)
T KOG0645|consen 180 EDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIR 256 (312)
T ss_pred cCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEE
Confidence 421 11111000111111222234444443333222 222222221110000 00111111122 34689999999999
Q ss_pred EEECCCC------eEE-EEeecCCCCeEEEEECCC-CCeEEEEeCCCCEEEeecC
Q 022074 236 VYDLVSG------EQV-AALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 236 iwd~~~~------~~~-~~~~~h~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~ 282 (303)
++..... +.+ +.-..|...|++++|+|. .+.|++++.||.+++|.+.
T Consensus 257 lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 257 LFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9976532 111 123478899999999996 6799999999999999874
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=182.99 Aligned_cols=234 Identities=24% Similarity=0.334 Sum_probs=173.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
-+..||.+.|.+++|+.+|..+++|+.|+++++|+++...... ...+|.+.|..++|.|+++++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3557999999999999999999999999999999998875443 34679999999999999999999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc--eeeece----eeeCC-
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS--YEWDYR----WMDYP- 183 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~--~~~~~~----~~~~~- 183 (303)
.+.. ++........+.+ .+.++|+|++++.++.|..|.+.|.|..+........+.. ..|... .+...
T Consensus 94 ~r~~----k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 94 IRSG----KCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred eccC----cEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 8733 3333333333444 4568999999999999999999999874432221111111 111100 00000
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
.....+..+....+.+++.|... ++...|+|+|++||+|+.|..+.+||+...-++..+.-+.-||..+.||.|
T Consensus 169 G~v~ILsypsLkpv~si~AH~sn------CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSN------CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ceEEEEeccccccccccccCCcc------eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 01122333344455556655521 223458899999999999999999999887778888889999999999999
Q ss_pred CCeEEEEeCCCCEE
Q 022074 264 QPMLVSSSWDGDVV 277 (303)
Q Consensus 264 ~~~las~s~Dg~i~ 277 (303)
|++||+||+|.-|-
T Consensus 243 g~~lASaSEDh~ID 256 (313)
T KOG1407|consen 243 GRMLASASEDHFID 256 (313)
T ss_pred cceeeccCccceEE
Confidence 99999999998774
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=194.82 Aligned_cols=236 Identities=22% Similarity=0.344 Sum_probs=180.2
Q ss_pred EEEccCchhhccccccccccCcCcc-c-----c--cCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCce----
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFS-A-----A--DDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL---- 73 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~--~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~---- 73 (303)
|.+|..++...-+-|++...=..-. + + ...||+..=++++|++... .+++|+.|++|.+||+.....
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 3456666666666666654322111 1 1 2258998788899998644 799999999999999976543
Q ss_pred ---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCC
Q 022074 74 ---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKD 149 (303)
Q Consensus 74 ---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D 149 (303)
...+.+|...|+.++|++...++|++++.|+.+.|||+|.. +.++.....+|...|++++|+|- +..|||||.|
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 23467899999999999888889999999999999999962 44566677889999999999984 5668999999
Q ss_pred CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe
Q 022074 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 150 ~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~ 229 (303)
++|+|||+|.+.. ++.++.+|.. .+....|+|. ....||+.+
T Consensus 295 ~tV~LwDlRnL~~---------------------------------~lh~~e~H~d--ev~~V~WSPh---~etvLASSg 336 (422)
T KOG0264|consen 295 KTVALWDLRNLNK---------------------------------PLHTFEGHED--EVFQVEWSPH---NETVLASSG 336 (422)
T ss_pred CcEEEeechhccc---------------------------------CceeccCCCc--ceEEEEeCCC---CCceeEecc
Confidence 9999999997643 1223333332 2333344442 356899999
Q ss_pred CCCeEEEEECCCC--------------eEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSG--------------EQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~--------------~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~ 282 (303)
.|+.+.+||+..- +++....+|+..|.+++|+|..+ .++|+++|+.+++|+..
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999998531 34567789999999999999998 58999999999999976
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=184.75 Aligned_cols=231 Identities=21% Similarity=0.360 Sum_probs=163.4
Q ss_pred CCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCC-CceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 35 DGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA-NKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.+..+..|.+|+|||. ...+++||+||+||+|++.. |... +....|.++|.+++|+ ++++.+++|+.|+++++||+
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-cCCceEEeeccCCceEEEEc
Confidence 3555666999999995 44566899999999999987 3433 3456799999999996 56788999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCC--EEEEEeCCCcEEEEEcccccCCcccccCccceeeecee----------
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW---------- 179 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~---------- 179 (303)
.+. +...+..|.++|..+.|-+... .|+|||.|++||.||+|...+.....+..+.+..+...
T Consensus 102 ~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred cCC-----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 632 3445667999999888866554 79999999999999999876666665555554433210
Q ss_pred ------eeCCCC-CccccCCC---CCcceE-----------Eecc----------cceeeeEEEeee-------------
Q 022074 180 ------MDYPPQ-ARDLKHPC---DQSVAT-----------YKGH----------SVLRTLIRCHFS------------- 215 (303)
Q Consensus 180 ------~~~~~~-~~~~~~~~---~~~~~~-----------~~~~----------~~~~~~~~~~~~------------- 215 (303)
+.-++. -+.+..+- -++++. ..|. .......+||.+
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 001111 00000000 001111 1110 011123455552
Q ss_pred eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
..|+|....|+|+|.||++.+||-..+.++++.+.|..||++++|+.+|.++|-+-
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 34777778899999999999999999999999999999999999999999888664
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=190.19 Aligned_cols=248 Identities=21% Similarity=0.258 Sum_probs=168.9
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC--CcEEEEecCCCeEEEEcC
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~lWd~ 111 (303)
..--|...|.++... +++|++|++||++|+||... +...++.+|.+.+..++|..++ ...|++++.|.++++|..
T Consensus 100 ~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 100 QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred ccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 334677788888777 78999999999999999854 4567889999999999884332 346999999999999987
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc--CCccccc------------Ccc------
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS--SNASCNL------------GFR------ 171 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~--~~~~~~~------------~~~------ 171 (303)
............-.||..+|-+++..+++..+++|+.|..+++|+..... .....+. ..+
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 53322222223334999999999999999999999999999999932211 0000000 000
Q ss_pred -ceeeeceeeeCCCCCccccCCCCCcceEEecccc----eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---
Q 022074 172 -SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV----LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--- 243 (303)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--- 243 (303)
.+...+....+++....+....+-.+..++-... ..+.-+..++..+++...+|++|+.|..|++||.+++.
T Consensus 257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 0001111122222222222222222333321110 11111233445577888999999999999999998774
Q ss_pred EEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
....|.+|+..|.++.|||... +|+|++.|+++++||+...
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 2457789999999999999875 6999999999999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=214.77 Aligned_cols=226 Identities=17% Similarity=0.261 Sum_probs=171.1
Q ss_pred Cchhhcccccccccc----CcCcc-cccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 12 SGTMESLANVTEIHD----GLDFS-AADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
+|+.|..+.||+.-. +.... +.....+...|.+++|++ ++.+|++++.||+|+|||+.+++....+.+|.+.|.
T Consensus 500 tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~ 579 (793)
T PLN00181 500 TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579 (793)
T ss_pred EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE
Confidence 456677888887522 11110 111123446799999997 478999999999999999999988888889999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeC-CCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR-GDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+++|++.++++|+||+.|++|++||++. ......+..+ ..+.++.+. +++.+|++|+.|+.|++||++....
T Consensus 580 ~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~----~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-- 652 (793)
T PLN00181 580 SIDYSSADPTLLASGSDDGSVKLWSINQ----GVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-- 652 (793)
T ss_pred EEEEcCCCCCEEEEEcCCCEEEEEECCC----CcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--
Confidence 9999876788999999999999999863 2334444433 568888884 5789999999999999999874221
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC--
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-- 242 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-- 242 (303)
.+..+.+|......+ .|. ++.++++++.|++|++||+..+
T Consensus 653 -------------------------------~~~~~~~h~~~V~~v------~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 653 -------------------------------PLCTMIGHSKTVSYV------RFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred -------------------------------cceEecCCCCCEEEE------EEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 011222232211111 233 4678999999999999999743
Q ss_pred ----eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 243 ----EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 243 ----~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.+..+.+|...++.++|+|++++|++|+.|+.+++|+..
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 5677889999999999999999999999999999999964
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=184.38 Aligned_cols=239 Identities=25% Similarity=0.408 Sum_probs=178.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|+.+|.+++|+|+++.+++++.||.+++|++.++.....+..|...+..+.|.++ ++.+++++.|+.|++||...
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~-- 82 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLET-- 82 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCc--
Confidence 489999999999999999999999999999999988877778889889989999754 57899999999999999752
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-C
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (303)
......+..|...+.++.+.+++.++++++.|+.+++||++......... .....+..+.+.+....+.... +
T Consensus 83 --~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 83 --GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred --ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcCC
Confidence 23455667888899999999998888888889999999997432221111 0111122233333333332222 3
Q ss_pred CcceEEecccc-eeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEE
Q 022074 195 QSVATYKGHSV-LRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 195 ~~~~~~~~~~~-~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las 269 (303)
..+..++.... ...... ......++++++.+++++.|+.|++||..+++.+..+..|..++.+++|+|++.++++
T Consensus 157 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 157 GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 33333322110 000111 1123446788888999999999999999998888888889999999999999999999
Q ss_pred EeCCCCEEEeecCC
Q 022074 270 SSWDGDVVRWEFPG 283 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~ 283 (303)
++.|+.+++|++..
T Consensus 237 ~~~~~~i~i~~~~~ 250 (289)
T cd00200 237 GSEDGTIRVWDLRT 250 (289)
T ss_pred EcCCCcEEEEEcCC
Confidence 98899999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=194.05 Aligned_cols=236 Identities=22% Similarity=0.390 Sum_probs=178.9
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCc--eEE------------EEecccCCeEEEEEccCCCcEEEEe
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANK--LSL------------RILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~--~~~------------~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
-+|+.+|.+++|+|-.. .+++|+.|-+.|+|++.... ... +-...+..|++++|+. +++.|++|
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~-~G~~LatG 253 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN-DGTLLATG 253 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC-CCCeEEEe
Confidence 35999999999999666 89999999999999997511 100 1112346899999975 58999999
Q ss_pred cCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 101 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 101 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+.||.+|+|+. .+..+..+..|.++|.++.++..|+||++++.|+++.+||...........+.... ..++.|+
T Consensus 254 ~~~G~~riw~~-----~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~ 327 (524)
T KOG0273|consen 254 SEDGEARIWNK-----DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQ 327 (524)
T ss_pred ecCcEEEEEec-----CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC-ccceEEe
Confidence 99999999995 45567788889999999999999999999999999999998654322222211111 1222222
Q ss_pred eC------CCC--CccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 181 DY------PPQ--ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 181 ~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
.. .++ ..-.+...++++.++.||......++ |.|.+++|++++.|++++||..........+.+|+
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk------~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs 401 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK------WNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS 401 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE------ECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc
Confidence 21 111 11123344667778888876554443 56779999999999999999998888888899999
Q ss_pred CCeEEEEECCCCC---------eEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPSQP---------MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~~~---------~las~s~Dg~i~~Wd~~~~ 284 (303)
..|..+.|||+++ .+++++.|+++++||+...
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 9999999999864 8999999999999998643
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=178.50 Aligned_cols=236 Identities=21% Similarity=0.314 Sum_probs=176.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC--CCeEEEEcCcccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLN 115 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~ 115 (303)
....|.++.|+++|..+++++.|.+++|||..+++....+..++.+|..++|.+... .++.++. |.+||+-++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~--- 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLH--- 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCc-eEEEccCCCCCceEEEEee---
Confidence 456799999999999999999999999999999999988888888999999976544 4444544 8899988864
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.++.++.|.||...|+.+..+|-+..+++++.|++||+||+|..++..-.....+. ..++.|++-.++..+..
T Consensus 89 -dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p------i~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 89 -DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP------IAAFDPEGLIFALANGS 161 (311)
T ss_pred -cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc------ceeECCCCcEEEEecCC
Confidence 45678899999999999999999999999999999999999965443322221111 12233333333222222
Q ss_pred -cceEE-----ecccceeeeE----EEee-eeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe---EEEEEC
Q 022074 196 -SVATY-----KGHSVLRTLI----RCHF-SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV---RDCSWH 261 (303)
Q Consensus 196 -~~~~~-----~~~~~~~~~~----~~~~-~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I---~~v~~s 261 (303)
.+..+ +...+....+ .+.+ ...|||+|++++.....+.+++.|.-.|..+..+..+...- .+..|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 22211 1111111111 1111 23589999999999999999999999999988888775433 688999
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
||++++.+++.||+|.+|++...
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC
Confidence 99999999999999999998644
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-25 Score=185.63 Aligned_cols=255 Identities=16% Similarity=0.261 Sum_probs=192.0
Q ss_pred cCchhhccccccccccCc-CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 11 GSGTMESLANVTEIHDGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
-+|+||-.|.||++-+|. +. ..+||-.-|..+++|+--.++.+++.|+.|+-||+...+.+..+.+|-..|.|+..
T Consensus 167 ~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~l 243 (460)
T KOG0285|consen 167 ATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDL 243 (460)
T ss_pred EecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEec
Confidence 368899999999998887 44 56899999999999999999999999999999999999988888999999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+| .-++++||+.|.++|+||.| +...+..+.||...|..+.+.+-+.+++||+-|++||+||++..+.-.....
T Consensus 244 hP-Tldvl~t~grDst~RvWDiR----tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~- 317 (460)
T KOG0285|consen 244 HP-TLDVLVTGGRDSTIRVWDIR----TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH- 317 (460)
T ss_pred cc-cceeEEecCCcceEEEeeec----ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-
Confidence 75 46799999999999999998 3445778999999999999988888999999999999999986543211111
Q ss_pred ccceeeeceeeeCCCCCcccc-----------CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 170 FRSYEWDYRWMDYPPQARDLK-----------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
..-.++.+...|....+. .+...-+..+.+|..+...+. .. +..++++|++.|.+.+||
T Consensus 318 ---hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~------~n-sD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 318 ---HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLS------VN-SDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred ---ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeee------ec-cCceEEEcCCceEEEEEe
Confidence 011112222222222121 122222333445543332221 12 235789999999999999
Q ss_pred CCCCeEEEEe---e-----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 239 LVSGEQVAAL---K-----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 239 ~~~~~~~~~~---~-----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++|-....+ . ..+..|.+.+|...+..|+||..|.+|++|.-...
T Consensus 388 wksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 388 WKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 9988533222 1 12457999999999999999999999999986544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=192.87 Aligned_cols=193 Identities=24% Similarity=0.440 Sum_probs=158.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
-+|+|+.+. .+.+++|..|++|+|||.++-.....+.+|++.|-|+.|. ..+++|||.|.+|++||.. +++
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~----tge 268 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVN----TGE 268 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEecc----CCc
Confidence 379999987 3469999999999999999888778899999999999993 4599999999999999975 667
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
+..++.+|.++|..+.|+. .+++|++.|+++.+||+...... . ....
T Consensus 269 ~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t------------------------------~rrV 315 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-T------------------------------LRRV 315 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-H------------------------------HHHH
Confidence 7888889999999998864 49999999999999998643210 0 1112
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+.||...... . ..+.+|+++++.|.+|++|++.+++.+.++.+|+..|.++.+ .+++++|||.|.+|++|
T Consensus 316 LvGHrAaVNv------V--dfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlw 385 (499)
T KOG0281|consen 316 LVGHRAAVNV------V--DFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 385 (499)
T ss_pred Hhhhhhheee------e--ccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEE
Confidence 2333211111 1 125679999999999999999999999999999999998877 78999999999999999
Q ss_pred ecCCC
Q 022074 280 EFPGN 284 (303)
Q Consensus 280 d~~~~ 284 (303)
|+...
T Consensus 386 di~~G 390 (499)
T KOG0281|consen 386 DIECG 390 (499)
T ss_pred ecccc
Confidence 98754
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=190.25 Aligned_cols=263 Identities=24% Similarity=0.341 Sum_probs=182.4
Q ss_pred EEEEEccCc-------hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE
Q 022074 5 VHIVDVGSG-------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 5 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
||.+--+.+ -||..|.+|+...++-.--....|-.++|.++.|.++++.+++++.|+.+++|++...++..++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL 257 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh
Confidence 455555544 5889999999977772213455788889999999999999999999999999999999998999
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+|++.|+++.|.. ....+++|+.|.++++||+....... ..+ ....+..+..+ ...+++|-.|++||+||.
T Consensus 258 sGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~k---t~l--~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 258 SGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSK---TVL--PGSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred cccccceeeehhhc-cccceeeccccchhhhhhhhhhheec---ccc--ccccccceEec--ceeeeecccccceEEEec
Confidence 99999999999953 34458999999999999985211111 112 22333344333 446889999999999999
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccc-cCCCCCcceEEeccccee------eeEEEe--e-eeeeeCCCeEEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHSVLR------TLIRCH--F-SPVYSTGQKYIYT 227 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~--~-~~~~s~~~~~lat 227 (303)
|..........+.+.. .+........+ ....+..+..++.....+ ...++. + ..+|||++.|+|+
T Consensus 330 Rs~~~~~sv~~gg~vt-----Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 330 RSADKTRSVPLGGRVT-----SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred cCCceeeEeecCccee-----eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence 8765443333221111 11111111111 111122222222211100 001111 1 2458999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCCC--eEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 228 GSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~h~~~--I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
||.||.|+||++.++++.+.++....+ |++++|+|.|..|++++-++.+.+|.
T Consensus 405 GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 405 GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999998888755544 99999999999999999999999994
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=201.12 Aligned_cols=237 Identities=21% Similarity=0.284 Sum_probs=160.3
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC--------------------------------Cc------------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--------------------------------NK------------ 72 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~--------------------------------~~------------ 72 (303)
+|+.+|.++.||+||++||+||.|+.|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 9999999999999999999999999999997755 00
Q ss_pred ----------------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEe
Q 022074 73 ----------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDS 136 (303)
Q Consensus 73 ----------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~ 136 (303)
....+.+|.+.|-.+.|+ + .++|+|++.|.|||||.+.. ....++| .|.+-|+|++|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-K-n~fLLSSSMDKTVRLWh~~~----~~CL~~F-~HndfVTcVaF 417 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-K-NNFLLSSSMDKTVRLWHPGR----KECLKVF-SHNDFVTCVAF 417 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccc-c-CCeeEeccccccEEeecCCC----cceeeEE-ecCCeeEEEEe
Confidence 112357899999999996 3 46899999999999999752 2345555 59999999999
Q ss_pred CC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc-ceEEe--cccceee-eEE
Q 022074 137 RG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS-VATYK--GHSVLRT-LIR 211 (303)
Q Consensus 137 ~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-~~~ 211 (303)
+| |++||++|+-|+.||||++....... ...+..-+..+.|.|+++.....+-.. +..+. +..+... .+.
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~-----W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVD-----WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEe-----ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 98 78999999999999999875422100 000000112233444444332221111 00000 0000000 000
Q ss_pred --------Ee--eeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 212 --------CH--FSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 212 --------~~--~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
+. ....|.| +...++..+.|..|||+|.++.+++..|+++.. .=....|+.||++|+++++|..+++
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 00 0011222 223467778999999999988888888886542 3457789999999999999999999
Q ss_pred eecCCCC
Q 022074 279 WEFPGNG 285 (303)
Q Consensus 279 Wd~~~~~ 285 (303)
|+.+...
T Consensus 573 W~~~~~~ 579 (712)
T KOG0283|consen 573 WKNDSFN 579 (712)
T ss_pred EeCCCCc
Confidence 9986543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=192.99 Aligned_cols=266 Identities=21% Similarity=0.280 Sum_probs=191.7
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVN 85 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~ 85 (303)
.|-||+|.-=|||+- .+|. -....+.+ +..|.++.|+++|.+|++|..+|.|.|||..+.+....+.. |...|-
T Consensus 190 ~laValg~~vylW~~---~s~~-v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg 264 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSA---SSGS-VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG 264 (484)
T ss_pred eEEEEecceEEEEec---CCCc-eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE
Confidence 467788877777732 1222 00111112 56699999999999999999999999999998877777777 999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+++|+ ...+.+|+.|+.|..+|++.... ....+.+|...|..+.+++++.++++||.|+.+.|||.........
T Consensus 265 ~laW~---~~~lssGsr~~~I~~~dvR~~~~---~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 265 SLAWN---SSVLSSGSRDGKILNHDVRISQH---VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred EEecc---CceEEEecCCCcEEEEEEecchh---hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence 99996 56899999999999999985432 2224778999999999999999999999999999999854322221
Q ss_pred cccCccceeeeceeeeCCCCCccccCC----CCCcceEEecccc--eeee--EEEeeeeeeeCCCeEEEE--EeCCCeEE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHP----CDQSVATYKGHSV--LRTL--IRCHFSPVYSTGQKYIYT--GSHDSCVY 235 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~--~~~~~~~~~s~~~~~lat--g~~dg~i~ 235 (303)
+..+..+++.+.++|....+... .++.+.-++-... +..+ -....+..+++..+.|++ |..+..|.
T Consensus 339 ----~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 339 ----FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred ----EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 22333445556665544333221 1233333221111 0000 001223456666655555 45788999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
||+..+.+++..+.+|..+|..+++||||..+++|+.|.++++|++-...+.
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERPK 466 (484)
T ss_pred EEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCCc
Confidence 9999999999999999999999999999999999999999999998765333
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-24 Score=185.03 Aligned_cols=239 Identities=21% Similarity=0.354 Sum_probs=183.2
Q ss_pred CchhhccccccccccCcCc---cc-----------ccCC--CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE
Q 022074 12 SGTMESLANVTEIHDGLDF---SA-----------ADDG--GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~---~~-----------~~~~--~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~ 75 (303)
+++-++.|.=|.+.+|++- ++ .-+. +|..-+.+++.|+||++|++|+.|..|.||+..+...+.
T Consensus 159 sask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~ 238 (479)
T KOG0299|consen 159 SASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK 238 (479)
T ss_pred ecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh
Confidence 5666777877888888732 11 1122 899999999999999999999999999999999999888
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
.+.+|-+.|.+++| ....+.+++++.|++|++|++.. ...+.++.||.+.|..++...-++.+-.|+.|+++++|
T Consensus 239 ~~~ghr~~V~~L~f-r~gt~~lys~s~Drsvkvw~~~~----~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAF-RKGTSELYSASADRSVKVWSIDQ----LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccccccceeeeee-ecCccceeeeecCCceEEEehhH----hHHHHHHhCCccceeeechhcccceEEeccccceeEEE
Confidence 88999999999999 45677899999999999999752 33466788999999999887777766677799999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
++.... .+ .+.++.....++. |- +...+++|+.+|.|.
T Consensus 314 Ki~ees-----ql------------------------------ifrg~~~sidcv~------~I-n~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 314 KIPEES-----QL------------------------------IFRGGEGSIDCVA------FI-NDEHFVSGSDNGSIA 351 (479)
T ss_pred eccccc-----ee------------------------------eeeCCCCCeeeEE------Ee-cccceeeccCCceEE
Confidence 983211 00 1111110011111 11 345799999999999
Q ss_pred EEECCCCeEEEEee-cC-----------CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCCCcccccc
Q 022074 236 VYDLVSGEQVAALK-YH-----------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR 297 (303)
Q Consensus 236 iwd~~~~~~~~~~~-~h-----------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~~~~ 297 (303)
+|++-+.+++.+.. .| ..+|++++..|...++|||+.+|.+++|.+..+.-+..+++...++
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc
Confidence 99998888776653 23 1289999999999999999999999999998776666666554443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=181.98 Aligned_cols=231 Identities=20% Similarity=0.330 Sum_probs=180.3
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
|+-||-|--- +-+|.+-=+|..- + +-.||...|++++|-|.-. ++++||.|++|.+|+-+.-+....+..|...|+
T Consensus 118 I~avGEGrer-fg~~F~~DSG~Sv-G-ei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 118 IAAVGEGRER-FGHVFLWDSGNSV-G-EITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEEecCccc-eeEEEEecCCCcc-c-eeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 3444444322 4455544444433 2 2279999999999998755 699999999999998888777777888999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec---ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
++.|+|+ +++|+|++.||++.+||.+ ++...+.+. +|.++|.+++|+||+..++|++.|+++||||+...+.
T Consensus 195 ~VRysPD-G~~Fat~gsDgki~iyDGk----tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 195 CVRYSPD-GSRFATAGSDGKIYIYDGK----TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eEEECCC-CCeEEEecCCccEEEEcCC----CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 9999865 8999999999999999976 444455555 7999999999999999999999999999999875432
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
......+ .......+.|.+. ...|++-+.+|+|.+++....
T Consensus 270 v~t~~~~---------------------------------~~v~dqqvG~lWq------kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 270 VSTWPMG---------------------------------STVEDQQVGCLWQ------KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred EEEeecC---------------------------------CchhceEEEEEEe------CCeEEEEEcCcEEEEecccCC
Confidence 2111000 0011112333332 457999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+..+.+|...|++++.+|++.+|.||+.||.|.-|+....
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 999999999999999999999999999999999999997543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.8e-24 Score=180.55 Aligned_cols=228 Identities=23% Similarity=0.326 Sum_probs=173.4
Q ss_pred cCchhhccccccccccCcCcccccC--CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-----------------
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADD--GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----------------- 71 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----------------- 71 (303)
=+|+||-++-.|.+=.|..--.... .||+.+|-+++-.++|..+++||+|.++.||+..+.
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 3678888888887744432211111 499999999999999999999999999999983221
Q ss_pred --------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE
Q 022074 72 --------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL 143 (303)
Q Consensus 72 --------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 143 (303)
.....+.+|.++|.++.|.+ ...+.|+++|.+|+.||+... ..+..+. -..++.+++.++..++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg----~~~~~~~-~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETG----GLKSTLT-TNKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecc----cceeeee-cCcceeEeeccccccee
Confidence 02235679999999999954 678899999999999998632 2222222 23568899999999999
Q ss_pred EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 144 ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
++|+.|+.+|+||.|.... .-....+.||......+. ++| .+..
T Consensus 316 ~~gssdr~irl~DPR~~~g-------------------------------s~v~~s~~gH~nwVssvk--wsp---~~~~ 359 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-------------------------------SVVSQSLIGHKNWVSSVK--WSP---TNEF 359 (423)
T ss_pred eecCCCCceeecCCCCCCC-------------------------------ceeEEeeecchhhhhhee--cCC---CCce
Confidence 9999999999999885321 012345566665433222 232 2456
Q ss_pred EEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 224 YIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+|++|+.|+++++||+++-+ .++.+.+|.+.|.++.|+. +..++|||.|++|+++.-.
T Consensus 360 ~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 360 QLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 79999999999999999887 7999999999999999965 5689999999999998743
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-25 Score=192.63 Aligned_cols=239 Identities=19% Similarity=0.351 Sum_probs=170.3
Q ss_pred CCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCC-CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 35 DGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..||+-+|.++.|.| .+..|++++.|+.|+||++-. +..+.++.+|..+|..++|+ +++..|+|++.|+++++||++
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~lKlwDtE 288 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN-NCGTSFLSASFDRFLKLWDTE 288 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhcc-ccCCeeeeeecceeeeeeccc
Confidence 369999999999999 899999999999999999977 66777899999999999996 568899999999999999975
Q ss_pred cccCCCccceeecccccC-eEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 113 CLNVKGKPAGVLMGHLEG-ITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~-v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
+++....+ |.+. +.++.+.|++ +.+++|+.|+.|+.||+|..+....+...... +....+-+......
T Consensus 289 ----TG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~----i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 289 ----TGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA----ILDITFVDEGRRFI 358 (503)
T ss_pred ----cceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh----eeeeEEccCCceEe
Confidence 44444444 5554 6788999988 88999999999999999975432222111111 11112222222222
Q ss_pred C-CCCCcceEEecccc--eeeeE--EEeeee--eeeCCCeEEEEEeCCCeEEEEECCCC---eEEEEeecCC--CCeEEE
Q 022074 191 H-PCDQSVATYKGHSV--LRTLI--RCHFSP--VYSTGQKYIYTGSHDSCVYVYDLVSG---EQVAALKYHT--SPVRDC 258 (303)
Q Consensus 191 ~-~~~~~~~~~~~~~~--~~~~~--~~~~~~--~~s~~~~~latg~~dg~i~iwd~~~~---~~~~~~~~h~--~~I~~v 258 (303)
. ..+..+..+.-... +..+. ..|..| ..+|++.++++-+.|.+|.++.+... .+.+.+++|. +.-..|
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v 438 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQV 438 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeE
Confidence 2 22223333322111 11110 112222 24688999999999999999987543 2345678886 456678
Q ss_pred EECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 259 SWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 259 ~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|||||++|++|+.||.+.+||..+.
T Consensus 439 ~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 439 DFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred EEcCCCCeEEeecCCccEEEeechhh
Confidence 99999999999999999999998754
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=186.68 Aligned_cols=200 Identities=23% Similarity=0.397 Sum_probs=159.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|.-.|++++|..||+.+++|...|.|+|||.++......+.+|..+|..+.|++.+++.|++|+.|+.+++||+..
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~--- 142 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST--- 142 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---
Confidence 44556999999999999999999999999998776666668899999999999988889999999999999999862
Q ss_pred CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
......+.+|++.|.+.+++|. ++.++|||.||.||+||+|....
T Consensus 143 -a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------------------------------- 188 (487)
T KOG0310|consen 143 -AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------------------------------- 188 (487)
T ss_pred -cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---------------------------------
Confidence 2335578899999999999885 56789999999999999986421
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.+++....+..+ .+-|.|+.+|+++. ..+++||+.+| +++..+..|...|+|+.+..++..|+|||-|+
T Consensus 189 ~v~elnhg~pVe~v-------l~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 189 RVVELNHGCPVESV-------LALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred eeEEecCCCceeeE-------EEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 11111111111111 13356788888864 46999999865 55666666999999999999999999999999
Q ss_pred CEEEeec
Q 022074 275 DVVRWEF 281 (303)
Q Consensus 275 ~i~~Wd~ 281 (303)
.+++||.
T Consensus 261 ~VKVfd~ 267 (487)
T KOG0310|consen 261 HVKVFDT 267 (487)
T ss_pred ceEEEEc
Confidence 9999983
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=172.34 Aligned_cols=238 Identities=16% Similarity=0.346 Sum_probs=170.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|+.+|++++.+|+.+.+++|+.|...+||+..++....++.+|++.|.++.|+. ++.+|+||+.+|.|++|+..
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s--- 136 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS--- 136 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc---
Confidence 59999999999999999999999999999999999998889999999999999976 48899999999999999965
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-C
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 194 (303)
++.....+.+..+.+.++.|+|.++.|+.|+.||.+-+|.+..... ++. +.........-.+.|.++.+.... +
T Consensus 137 -tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 137 -TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKV-MSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred -cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce---eeE-ecCCCCCcccccccCCCceEEEEecC
Confidence 3333444545667799999999999999999999999999865211 110 111111111122334444433222 2
Q ss_pred CcceEEe---cccceeee------EEEe-------------------------------eee------------------
Q 022074 195 QSVATYK---GHSVLRTL------IRCH-------------------------------FSP------------------ 216 (303)
Q Consensus 195 ~~~~~~~---~~~~~~~~------~~~~-------------------------------~~~------------------ 216 (303)
..+..++ ++...+.. ..|. +.+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 2333332 22222111 1100 000
Q ss_pred -eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 217 -VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 217 -~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++..-.+.|+|+.||+|.|||+....+.. .-.|+.+|..+.|-+ ..+|++++.||+++.||....
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 011222578899999999999997765443 446899999999998 889999999999999998754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=176.46 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=163.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC------------C------ceEEEEecccCCeEEEEEccCCCcEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------------N------KLSLRILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~------------~------~~~~~~~~h~~~v~~l~~~~~~~~~l 97 (303)
+-|+.++.+.+|++||..+++||.|..|+|+|++. + ..+.++..|.+.|+++.|+| ..+.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~IL 187 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETIL 187 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheE
Confidence 47889999999999999999999999999999872 1 12345667899999999976 47899
Q ss_pred EEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
++|+.|++|++||..-.. ..+..+.+ .....|.+++|+|.|.+++.|..--++|+||+..-.+..+++
T Consensus 188 iS~srD~tvKlFDfsK~s-aKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan---------- 255 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKTS-AKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN---------- 255 (430)
T ss_pred EeccCCCeEEEEecccHH-HHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC----------
Confidence 999999999999974111 11222233 345689999999999999999999999999986422111100
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCC-CCe
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT-SPV 255 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~-~~I 255 (303)
| . ++|.... ....||+.+++-+||+.||.|++||-.++.++.++. .|. ..|
T Consensus 256 ------P--------d-------~qht~ai------~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 256 ------P--------D-------DQHTGAI------TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred ------c--------c-------cccccce------eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence 0 0 1111111 123367889999999999999999998888887774 564 589
Q ss_pred EEEEECCCCCeEEEEeCCCCEEEeecCCCCc
Q 022074 256 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~ 286 (303)
.+..|+.++++++|.+.|..+++|++...++
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999999999999999987754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=189.12 Aligned_cols=186 Identities=17% Similarity=0.248 Sum_probs=145.1
Q ss_pred eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC----CccceeecccccCeE
Q 022074 57 GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK----GKPAGVLMGHLEGIT 132 (303)
Q Consensus 57 gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~----~~~~~~~~~h~~~v~ 132 (303)
|+.++.|+||+.........+.+|.+.|.+++|+|..+++|+||+.|++|++||+...... ..+...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 6678899999987776677788999999999998766789999999999999998632110 123446788999999
Q ss_pred EEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 133 FIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 133 ~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
++.|+|++.. |++++.|++|++||++..... ..+..+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~----------------------------------~~i~~~~------- 168 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA----------------------------------FQINMPK------- 168 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEE----------------------------------EEEecCC-------
Confidence 9999998876 579999999999999753211 0011000
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-----EEEECCCCCeEEEEeCCC----CEEEeecC
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-----DCSWHPSQPMLVSSSWDG----DVVRWEFP 282 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~-----~v~~sp~~~~las~s~Dg----~i~~Wd~~ 282 (303)
...+..|+++|++|++++.|+.|+|||+++++.+..+.+|.+.+. ...|++++.+|+|++.|+ ++++||+.
T Consensus 169 ~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence 012334778999999999999999999999999989999987643 345678999999988774 79999987
Q ss_pred C
Q 022074 283 G 283 (303)
Q Consensus 283 ~ 283 (303)
.
T Consensus 249 ~ 249 (568)
T PTZ00420 249 N 249 (568)
T ss_pred C
Confidence 4
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-24 Score=171.18 Aligned_cols=224 Identities=20% Similarity=0.268 Sum_probs=161.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEEEE-ccCCCcEEEEecCCCeEEEE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCF-GDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~-~~~~~~~l~s~s~dg~v~lW 109 (303)
.+++|+.-|..+...--|++|++++.|++|+||+..... +..++.+|.++|..++| +|+.++.|+|++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 348899999998888889999999999999999997653 56678999999999999 55679999999999999999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
.-. +........+..|..+|+++++.|. |-.|++++.||.|.+.+.+..- ....+.........+....+.|...
T Consensus 86 ke~--~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g-~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 86 KEE--NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG-GWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred ecC--CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC-CccchhhhhccccccceeeecCcCC
Confidence 843 1233344566789999999998875 5778999999999999877531 0000000011111111111111100
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCC-
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQ- 264 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~- 264 (303)
. ..+-.+. + ...-+.|++||.|..|+||+..+++ +..+|++|.+.|.+++|.|.-
T Consensus 163 ~---------g~~~~~~-----------~--~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 163 P---------GSLVDQG-----------P--AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG 220 (299)
T ss_pred C---------ccccccC-----------c--ccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC
Confidence 0 0000000 0 0012569999999999999998763 345689999999999999974
Q ss_pred ---CeEEEEeCCCCEEEeecC
Q 022074 265 ---PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ---~~las~s~Dg~i~~Wd~~ 282 (303)
.+|||+|+||++.+|...
T Consensus 221 l~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCceeeEEecCCCcEEEEEec
Confidence 389999999999999965
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=193.58 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=180.3
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+-|.-+++|+.-+|+.. .....||..+|.++.+..-+..+++|+.|.++++||..+|+....+.+|..-|.++...
T Consensus 223 ~~s~~~tl~~~~~~~~~~i-~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~- 300 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLI-LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID- 300 (537)
T ss_pred ecCCCceeEEeecccceEE-EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-
Confidence 5666777799999888755 33357999999999999878899999999999999999999999999999999998764
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+..+++|+.|.+|++|++. ++.....+.+|.++|.++... +.++++|+.|++|++||.+..
T Consensus 301 --~~~~~sgs~D~tVkVW~v~----n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------- 361 (537)
T KOG0274|consen 301 --PFLLVSGSRDNTVKVWDVT----NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------- 361 (537)
T ss_pred --CceEeeccCCceEEEEecc----CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc-----------
Confidence 4578889999999999975 445566677799999999886 779999999999999998632
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCC-eEEEEee
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSG-EQVAALK 249 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~-~~~~~~~ 249 (303)
.++.++.||....+.+. .++ ..+++|+.|++|++||+.+. +++.++.
T Consensus 362 -----------------------~cl~sl~gH~~~V~sl~--------~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~ 410 (537)
T KOG0274|consen 362 -----------------------KCLKSLSGHTGRVYSLI--------VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ 410 (537)
T ss_pred -----------------------eeeeeecCCcceEEEEE--------ecCcceEEeeeeccceEeecCCchhhhhhhhc
Confidence 24556677765443321 234 78999999999999999999 8899999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+|..-+.++.+ .+++|++++.|++|++||...
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeeccc
Confidence 99988865554 678999999999999999753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=168.93 Aligned_cols=252 Identities=21% Similarity=0.372 Sum_probs=183.0
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCc
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~--Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 95 (303)
.+.+-+..+|++.- ..+-++.++..+.|......++.++. |.+||..++.+.+-+..+.+|...|+.++.+|. ++
T Consensus 37 sl~LYd~~~g~~~~--ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~-~d 113 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVK--TINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPK-DD 113 (311)
T ss_pred eEEEEEcCCCceee--EeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCC-CC
Confidence 44566666666442 12567778999999988888888887 889999999999988889999999999999875 58
Q ss_pred EEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc-cee
Q 022074 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR-SYE 174 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~-~~~ 174 (303)
.|+|++.|++||+||+|..+ ..+.+ +...-..+++.|+|-++|.+.....|+|||+|............. ...
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~----cqg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~ 187 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKK----CQGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDE 187 (311)
T ss_pred eEEecccCCeEEeeEecCCC----CceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCc
Confidence 99999999999999998432 22233 333344567899999999888877999999998643222211111 112
Q ss_pred eeceeeeCCCCCccccCCCCCc-c---eEEecc--------cceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQS-V---ATYKGH--------SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~--------~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
-++..++++++++.+...+... + ..++|. .... .......|+||++++++|+.||+|++|+++++
T Consensus 188 ~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~---~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 188 AEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG---NLPLSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred cceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC---CcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 2234567788877665443221 1 222222 1110 01123458899999999999999999999999
Q ss_pred eEEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 243 EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 243 ~~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+++..+.+ +..++.++.|+|.-.+++|++ .++.+|=...
T Consensus 265 ~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 265 KKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred cEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 99999887 789999999999999999996 5788887543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=186.25 Aligned_cols=204 Identities=17% Similarity=0.260 Sum_probs=154.1
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-------------EEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-------------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.|.....++++..+++++.+..+..|+...+... ..+.+|.+.|.+++|+|.++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4555666677777777777777777876554322 136689999999999875678999999999999
Q ss_pred EEcCccccC---CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 108 VWDRRCLNV---KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 108 lWd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
+||+..... ...+...+.+|...|.++.|+|++ ++|++++.|++|++||++....
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--------------------- 160 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--------------------- 160 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE---------------------
Confidence 999853211 123456788999999999999975 6899999999999999864211
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-eEEEEECC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP-VRDCSWHP 262 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~-I~~v~~sp 262 (303)
+..+.+|.... .+..|++++.+|++++.|+.|++||+++++.+..+.+|... +..+.|++
T Consensus 161 -------------~~~l~~h~~~V------~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~ 221 (493)
T PTZ00421 161 -------------VEVIKCHSDQI------TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK 221 (493)
T ss_pred -------------EEEEcCCCCce------EEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC
Confidence 11222222111 12346788999999999999999999999998888889764 45788999
Q ss_pred CCCeEEEEe----CCCCEEEeecCCC
Q 022074 263 SQPMLVSSS----WDGDVVRWEFPGN 284 (303)
Q Consensus 263 ~~~~las~s----~Dg~i~~Wd~~~~ 284 (303)
++..+++++ .|+++++||+...
T Consensus 222 ~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 222 RKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 988877765 4799999998643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=180.50 Aligned_cols=221 Identities=22% Similarity=0.304 Sum_probs=170.9
Q ss_pred cccccccccCcCcccccCCCcc--cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCc
Q 022074 18 LANVTEIHDGLDFSAADDGGYS--FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 95 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 95 (303)
+++||+++.-.++. .-.. .+|.++.-+|+|.+++.|+-.|.+++|.+.+|.+...+.+|-..|+|+.|+ +++.
T Consensus 62 ~l~vw~i~k~~~~~----q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs 136 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV----QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGS 136 (476)
T ss_pred cccccccCchhhhh----hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCc
Confidence 67999996555442 1122 359999999999999999899999999999999988889999999999996 5689
Q ss_pred EEEEecCCCeEEEEcCcc-----ccCCCccceeecccccCeEEEEeCC--CCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 96 LIYSGSDDNLCKVWDRRC-----LNVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
+|+||++||.|.+|.+.. ......+...+..|.-+|+.+.+.. ...+++|+|.|+++|+||+.......+..+
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f 216 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF 216 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence 999999999999997631 1123457788999999999887654 346899999999999999976432211111
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC------
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG------ 242 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~------ 242 (303)
|.. +. +....|..+.+..|+++|.|.+.++.+-
T Consensus 217 --------------p~s-----------------------i~----av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 217 --------------PSS-----------------------IK----AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred --------------CCc-----------------------ce----eEEEcccccEEEecCCcceEEeeehhcCCccccc
Confidence 000 00 0113455778889999999999886432
Q ss_pred ----------eEEEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 243 ----------EQVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 243 ----------~~~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.....+.+|++ +|++++.|-||.+|++|+.||++.+||+.+.
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 23456678988 9999999999999999999999999998654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=167.19 Aligned_cols=211 Identities=21% Similarity=0.202 Sum_probs=152.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
+-..||+.|+..|.|+.+|..|.+++.|.++.||-..+|...-++.+|.+.|.++... .+.+.++||+.|.+++|||..
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcC
Confidence 4558999999999999999999999999999999888888888999999999999984 457789999999999999975
Q ss_pred cccCC-------------------------------------------------CccceeecccccCeEEEEeCCCCCEE
Q 022074 113 CLNVK-------------------------------------------------GKPAGVLMGHLEGITFIDSRGDGRYL 143 (303)
Q Consensus 113 ~~~~~-------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l 143 (303)
.+.+. ..|...+..+...++..-|.+.+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 32110 01112223344566677788889999
Q ss_pred EEEeCCCcEEEEEcccccCC-cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC
Q 022074 144 ISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
++|..||.|..||.+..... .+... +.-.+. ...++++.
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~----h~~~In------------------------------------d~q~s~d~ 202 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEE----HSSKIN------------------------------------DLQFSRDR 202 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhh----hccccc------------------------------------cccccCCc
Confidence 99999999999998863211 11000 000001 11233444
Q ss_pred eEEEEEeCCCeEEEEECCCC-------------------------------------------------------eEEEE
Q 022074 223 KYIYTGSHDSCVYVYDLVSG-------------------------------------------------------EQVAA 247 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~-------------------------------------------------------~~~~~ 247 (303)
.+++|++.|.+.++||..+. +++..
T Consensus 203 T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr 282 (327)
T KOG0643|consen 203 TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR 282 (327)
T ss_pred ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence 44444444444444443321 24455
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|-+||++++|||+|+-.+||++||.+++--+..+
T Consensus 283 vkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 283 VKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 6779999999999999999999999999999887654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=173.87 Aligned_cols=234 Identities=24% Similarity=0.413 Sum_probs=190.9
Q ss_pred EccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEE------CCCCc----------
Q 022074 9 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD------LEANK---------- 72 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd------~~~~~---------- 72 (303)
++|.||-|+.+-+|-+-.|.=.- .+.||.+.|.+|.|++.+..++++|.|++..||. ++...
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~--~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE 239 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLA--TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEE 239 (481)
T ss_pred ceeecccccceeEEeecccccee--eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhh
Confidence 68999999999999997777553 6799999999999999999999999999999996 22100
Q ss_pred ------------------------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 73 ------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 73 ------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
....+.+|...|.+..|. ..++.++++++|.+..+||.+ ++.+...+.||.
T Consensus 240 ~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVE----tge~v~~LtGHd 314 (481)
T KOG0300|consen 240 EEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVE----TGEVVNILTGHD 314 (481)
T ss_pred hhcccccccccccccccCCceeeeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeec----cCceeccccCcc
Confidence 124567788888888885 468899999999999999986 566778899999
Q ss_pred cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceee
Q 022074 129 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 208 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (303)
...+.++.+|..++.+|++.|.+.|+||.|.. -..+..|+||....+
T Consensus 315 ~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---------------------------------I~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 315 SELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---------------------------------IQSVAVFQGHTDTVT 361 (481)
T ss_pred hhccccccCCcceEEEEeccCceeEeccchhh---------------------------------cceeeeeccccccee
Confidence 99999989999999999999999999998731 113556777764433
Q ss_pred eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 209 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 209 ~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
. .+|..+. .+++|+.|.+|++||++++. .+.++. ...+++.++.+..++.+|---+++.+++||+.+.+-+
T Consensus 362 S------~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 362 S------VVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred E------EEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 2 2355544 48999999999999998764 577775 4578999999999999999999999999999887654
Q ss_pred CCC
Q 022074 288 APP 290 (303)
Q Consensus 288 ~~~ 290 (303)
+-|
T Consensus 434 RlP 436 (481)
T KOG0300|consen 434 RLP 436 (481)
T ss_pred cCC
Confidence 333
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=193.59 Aligned_cols=198 Identities=24% Similarity=0.393 Sum_probs=169.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.+|..++|+|...+++++--.|.|++||-+.+.+..++..|+++|..++|+|. ..+|+||+.|-.|++|+.+ +.+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecc----cce
Confidence 46899999999999999999999999999999999999999999999999765 5699999999999999975 334
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
..-++.||.+-|..+.|++.-..|+|+|.|.+||||+... ..+++.
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs----------------------------------r~~iav 130 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS----------------------------------RKCIAV 130 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC----------------------------------CceEEE
Confidence 4557889999999999999999999999999999999753 235778
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC--------C-------------------e--EEEEeec
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--------G-------------------E--QVAALKY 250 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~--------~-------------------~--~~~~~~~ 250 (303)
++||.....+ ..|+|...++++||-|.+||+||+.- + . .-..+++
T Consensus 131 ltGHnHYVMc------AqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 131 LTGHNHYVMC------AQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred EecCceEEEe------eccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 8888754433 34667778999999999999999742 1 0 1134679
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|...|+-++|+|+-++++||++|+.+++|...
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn 236 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN 236 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEec
Confidence 99999999999999999999999999999864
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-23 Score=185.98 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=171.9
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
.|.||.-|.|+..-. .++ .....||+..|.|++..-++. +++||+|.|+++|.. ++....+.+|...|.+++.-|
T Consensus 76 ~g~~D~~i~v~~~~~-~~P-~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQ-AEP-LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred eecccceEEEEecCC-CCc-hhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecC
Confidence 478898898887722 222 234479999999999887776 999999999999955 666667899999999998866
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
++ .++||+.|.+|++|.. ++...+|.||.+.|..+++-+++ .|++++.||.||+|++..
T Consensus 151 e~--~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------------ 209 (745)
T KOG0301|consen 151 EN--TYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------------ 209 (745)
T ss_pred CC--cEEeccCcceeeeccC------CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------------
Confidence 53 7889999999999973 35677899999999999987765 599999999999999842
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 251 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h 251 (303)
..+..+.||....+.+. ...+++.++++|+|++++||+.. +++..+...
T Consensus 210 -----------------------e~l~~~~ghtn~vYsis------~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP 258 (745)
T KOG0301|consen 210 -----------------------EVLLEMHGHTNFVYSIS------MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP 258 (745)
T ss_pred -----------------------ceeeeeeccceEEEEEE------ecCCCCeEEEecCCceEEEeecC--ceEEEEecC
Confidence 12445555654443332 23457889999999999999976 667777766
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
...||++.+-++|. +++|+.||.+++|.....|.+
T Consensus 259 ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 259 TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred ccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 67899999999888 566777999999998755444
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=183.31 Aligned_cols=205 Identities=21% Similarity=0.332 Sum_probs=175.5
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|+-.|.++.|+|...+++++-.+|.|.||+-++...+..+...+-+|.+..|-. -.+++++|+.|..||+|+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnyn---- 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYN---- 85 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecc----
Confidence 3677899999999999999999999999999999998888887788899888854 35799999999999999974
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+...+..|..|.+-+.+++.+|..++++|+|.|.+|++||-... | .+
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------------w-------------------a~ 132 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------------W-------------------AC 132 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--------------e-------------------ee
Confidence 45567789999999999999999999999999999999997531 1 13
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC--CeEEEEeCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ--PMLVSSSWDG 274 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~--~~las~s~Dg 274 (303)
..++.||.. .++...+.| .|...+|+++-|++|++|.+.+..+..++++|+..|+++.|-+.| ++|+||++|.
T Consensus 133 ~qtfeGH~H--yVMqv~fnP---kD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 133 EQTFEGHEH--YVMQVAFNP---KDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred eeEEcCcce--EEEEEEecC---CCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 456777763 345555555 366789999999999999999988899999999999999998754 7999999999
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++||.+..
T Consensus 208 tiKvWDyQtk 217 (794)
T KOG0276|consen 208 TIKVWDYQTK 217 (794)
T ss_pred eEEEeecchH
Confidence 9999998753
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=192.93 Aligned_cols=268 Identities=22% Similarity=0.347 Sum_probs=187.7
Q ss_pred ccCch--hhccccccccccCcCc-ccccC---------CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-------
Q 022074 10 VGSGT--MESLANVTEIHDGLDF-SAADD---------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA------- 70 (303)
Q Consensus 10 ~~~~~--~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~------- 70 (303)
+++|. +|.-+-||.+-.=++. ...++ --|.+.|.|+.|++||++||+||.|+.|.||+...
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~f 107 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVF 107 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccc
Confidence 34555 7766666655332211 12222 27889999999999999999999999999998873
Q ss_pred ---C--------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC
Q 022074 71 ---N--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139 (303)
Q Consensus 71 ---~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 139 (303)
| +....+.+|+..|..++|+| ++.+|++++.|.+|.+|+.+.+ +...++.+|...|..+.|.|-
T Consensus 108 gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF----~~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 108 GSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTF----ELLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred cccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccc----eeeeeeecccccccceEECCc
Confidence 0 13356789999999999986 6889999999999999997633 557788999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccccCCcccccCcccee--eeceeeeCCCCCccccCCCC----------------CcceEEe
Q 022074 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE--WDYRWMDYPPQARDLKHPCD----------------QSVATYK 201 (303)
Q Consensus 140 ~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 201 (303)
|+||+|-+.|++|++|++......-..+..|.... --...+.++|+++.+..+.. ..-..+-
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv 262 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV 262 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee
Confidence 99999999999999999654211111111111000 01223556777776654321 0112344
Q ss_pred cccceeeeEEEeeeee-ee--------CCC----eEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeE
Q 022074 202 GHSVLRTLIRCHFSPV-YS--------TGQ----KYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~~-~s--------~~~----~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~l 267 (303)
||....++++ |+|. |. ... ..+|+|+.|++|.||.....+++... +--...|.+++|||||..|
T Consensus 263 GH~~p~evvr--FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 263 GHSAPVEVVR--FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred cCCCceEEEE--eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeE
Confidence 5654444443 3332 11 111 26889999999999998776765432 2234689999999999999
Q ss_pred EEEeCCCCEEEeecCCC
Q 022074 268 VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~ 284 (303)
..+|.||++.+..+...
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998643
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-22 Score=159.15 Aligned_cols=211 Identities=22% Similarity=0.374 Sum_probs=158.9
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----eEEEEecccCCeEEEEEccC--C-CcEEEEec-CCCeEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDE--S-GHLIYSGS-DDNLCK 107 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~~~v~~l~~~~~--~-~~~l~s~s-~dg~v~ 107 (303)
-|+..|+|.+|+|+|+.+++||+|.+|++...+... ...++.-|++-|..++|..+ . +..|++++ .|..|+
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 688999999999999999999999999998665432 12456678999999999532 2 44566654 344555
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+-| + ..+.....+.||.+.+.++ ++.++-.+++|+.|++||+||+|...........+
T Consensus 167 ~td--c--~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~----------------- 224 (350)
T KOG0641|consen 167 ITD--C--GRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF----------------- 224 (350)
T ss_pred Eee--c--CCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcc-----------------
Confidence 444 3 3566778899999999887 45567799999999999999998643221111000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
.+.......+ ......|.|++|++|-+|..+.+||++-+.++..+-.|...|.++.|||..-+|
T Consensus 225 -------------~~~glessav---aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yl 288 (350)
T KOG0641|consen 225 -------------HDGGLESSAV---AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYL 288 (350)
T ss_pred -------------cCCCccccee---EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEE
Confidence 0000000000 112245789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
.|++.|..|++=|+++..
T Consensus 289 lt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 289 LTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEecccceEEEeecccch
Confidence 999999999999998763
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=182.04 Aligned_cols=207 Identities=26% Similarity=0.473 Sum_probs=159.4
Q ss_pred CcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEeccc------CCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 37 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHT------SDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
||...+.|.+|+|+.+ .+++++.||++||||+...+...++..|. -.+..++|++ +++++++|..||+|.+|
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeee
Confidence 9999999999999654 79999999999999998876554444432 2577889975 58899999999999999
Q ss_pred cCccccCCCccceeeccccc--CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 110 DRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+.+.... ......-..|.. .++++.|+++|++|++=|.|.++++||||..+.......++..
T Consensus 345 ~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--------------- 408 (641)
T KOG0772|consen 345 DKGSRTV-RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--------------- 408 (641)
T ss_pred ecCCccc-ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc---------------
Confidence 9753321 112333456877 7999999999999999999999999999975432211111000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC------CCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
.+. .-.| .|||+.++++||.. .|.+.+||..+.+.++.+......|-.+.||
T Consensus 409 -----------~~~-------~tdc----~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 409 -----------PFP-------GTDC----CFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred -----------cCC-------CCcc----ccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 000 0012 27788999999763 6789999999999998888788899999999
Q ss_pred CCCCeEEEEeCCCCEEEeecC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~ 282 (303)
|.-++|..++.||+++++--+
T Consensus 467 pkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred chhhheeeecCCCceEEEECc
Confidence 999999999999999987643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-23 Score=176.34 Aligned_cols=200 Identities=23% Similarity=0.332 Sum_probs=166.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
++.++...+....+++|+.|.++.++|-..++....+.+|...|+.+.+++ +...+++++.|-.+++|.... ...
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~----~s~ 295 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPL----SSE 295 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeecccc----ccC
Confidence 389999998878999999999999999999999989999999999999975 456788999999999998631 122
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
......|.++|+.+..++.|.||++++.|++.-+.|++......... -
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs--------------------------------~ 343 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVS--------------------------------D 343 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEe--------------------------------e
Confidence 33455699999999999999999999999999999987533211000 0
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+.. ....+..|+|||-+|++|..|+.++|||++++..+..|.+|+++|..++|+.+|=+||++++|+.+++||
T Consensus 344 ~~s~------v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 344 ETSD------VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred cccc------ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 0000 0122456899999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCC
Q 022074 281 FPG 283 (303)
Q Consensus 281 ~~~ 283 (303)
+..
T Consensus 418 LRK 420 (506)
T KOG0289|consen 418 LRK 420 (506)
T ss_pred ehh
Confidence 864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-22 Score=163.61 Aligned_cols=243 Identities=18% Similarity=0.273 Sum_probs=163.8
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEc-cCCCcEEEEecCCCeE
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG-DESGHLIYSGSDDNLC 106 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~-~~~~~~l~s~s~dg~v 106 (303)
++.++||..=|.+++|..-|+++++|+.|++|.|||.+.+. ....+..|.+.|..+.|. |+.|+.+++++.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 44568999999999999999999999999999999964432 234578899999999994 5569999999999999
Q ss_pred EEEcCc--cccC---CCccceeecccccCeEEEEeCC--CCCEEEEEeCCCcEEEEEcccccC----------------C
Q 022074 107 KVWDRR--CLNV---KGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSS----------------N 163 (303)
Q Consensus 107 ~lWd~~--~~~~---~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~D~~v~lWdl~~~~~----------------~ 163 (303)
++|.=. ..+. .....+.+......|+.+.|.| -|-.|++++.||.+|||+.-.... .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999731 1111 1112334556677899998887 477899999999999997532110 0
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCC------c--ceEE-------------ecccceeeeEEEeeeeeeeCCC
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ------S--VATY-------------KGHSVLRTLIRCHFSPVYSTGQ 222 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~-------------~~~~~~~~~~~~~~~~~~s~~~ 222 (303)
..+...-.++.|.... ...+.+...++. . +..+ .++... +....|.|..-...
T Consensus 166 ~~~~~~~~CvsWn~sr----~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSR----MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISWAPNIGRSY 239 (361)
T ss_pred ccccCcceEEeecccc----ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeeeccccCCce
Confidence 0011111122332110 111111111111 1 1111 112111 11233444433445
Q ss_pred eEEEEEeCCCeEEEEECCCC--------------------eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 223 KYIYTGSHDSCVYVYDLVSG--------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~--------------------~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.+||+|+.|| |+||.++.. +++..+..|+++|+.+.|+-.|.+|+|.|.||.+++|..
T Consensus 240 ~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 240 HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 7899999999 999998731 345667899999999999999999999999999999973
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=162.70 Aligned_cols=221 Identities=20% Similarity=0.381 Sum_probs=169.6
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
.-+|++|....||-+-++.-.-.....||...|-.+.|+| +...+++++.|.+|++||...++...++....+. ..+.
T Consensus 35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~ 113 (313)
T KOG1407|consen 35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INIT 113 (313)
T ss_pred eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEE
Confidence 4578999999999886653222445589999999999997 5668999999999999999999877665544444 3455
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccC-------------------------------------CCccceeecccccCe
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNV-------------------------------------KGKPAGVLMGHLEGI 131 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~-------------------------------------~~~~~~~~~~h~~~v 131 (303)
|+| ++++++.+++|..|...|.+.... ..+++..+..|....
T Consensus 114 wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snC 192 (313)
T KOG1407|consen 114 WSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNC 192 (313)
T ss_pred EcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcce
Confidence 755 477888888888888877642100 113445567799888
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
.++.|+|+|++||+|+.|..+.|||+..+.+.-. +..++|.++
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~----isRldwpVR--------------------------------- 235 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELICERC----ISRLDWPVR--------------------------------- 235 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhhhhee----eccccCceE---------------------------------
Confidence 9999999999999999999999999875432110 111122111
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
...||.+|++||+|++|..|-|=++++|+.+..+. +++|...|+|+|..++||-+++|
T Consensus 236 ---TlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 236 ---TLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ---EEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 23488899999999999999999999999998874 88999999999999999988876
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=188.37 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=179.4
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+||.|-.+.||+..+|.--. ...||...|.++...+ ..+++||.|.+|++|+++++.....+.+|.+.|+++..+
T Consensus 266 sgS~D~t~rvWd~~sg~C~~--~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH--SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEecCCcEEeEecCCCcEEE--EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 57788889999987777332 4469999999998774 468889999999999999999888888899999999985
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
..++++|+.|++|++||.. ..+....+.||...|.++.+.+. ..+++|+.|++|++||++...
T Consensus 341 --~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---------- 403 (537)
T KOG0274|consen 341 --EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---------- 403 (537)
T ss_pred --CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----------
Confidence 5699999999999999986 45667889999999999977654 789999999999999997641
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec-
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY- 250 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~- 250 (303)
+++.++.+|......+ ...+++|++++.|++|++||..+++.+..+++
T Consensus 404 -----------------------~c~~tl~~h~~~v~~l--------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 404 -----------------------KCIHTLQGHTSLVSSL--------LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred -----------------------hhhhhhcCCccccccc--------ccccceeEeccccccEEEeecccCceeeeeccC
Confidence 1233444444332111 12467899999999999999999999999988
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|...|+.+++. ...+++++.||++++||++..
T Consensus 453 ~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 453 HVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred CcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 67899999987 678999999999999998765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=175.59 Aligned_cols=233 Identities=19% Similarity=0.281 Sum_probs=163.1
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.||.-+|.|++=+|.. ..+++|+.||.|+|||+........+..|.+.|..+++.. ..+++++.|.+|+.|.....
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~ 139 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP 139 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccCC
Confidence 7999999999999987 7899999999999999999888888999999999999953 57889999999999973210
Q ss_pred -----------------------cC-----------CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEccc
Q 022074 115 -----------------------NV-----------KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 115 -----------------------~~-----------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~ 159 (303)
.. ...|+..+.--.+.+.++.|+|-. ..|++++.|++|.|||+|.
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~ 219 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ 219 (433)
T ss_pred cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc
Confidence 00 011233333334667888888854 4577888999999999997
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceE------------EecccceeeeEEEeeeeeeeCCCeEEE
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVAT------------YKGHSVLRTLIRCHFSPVYSTGQKYIY 226 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~~~~~s~~~~~la 226 (303)
..+.-+..+.-+. ..+.+.|..-.+.... +..+.. +.+|. ......+|||.|+.++
T Consensus 220 ~~Pl~KVi~~mRT-----N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhv------sAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 220 ASPLKKVILTMRT-----NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHV------SAVMDVDFSPTGQEFV 288 (433)
T ss_pred CCccceeeeeccc-----cceecCccccceeeccccccceehhhhhhcccchhhcccc------eeEEEeccCCCcchhc
Confidence 6543332221111 1122222222221111 112222 22222 1223456889999999
Q ss_pred EEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 227 TGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+||.|++|+||....+...-.+ ..-...|.++.||.|.++++|||+|+++++|...
T Consensus 289 sgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999999999999876532221 1122469999999999999999999999999964
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=162.97 Aligned_cols=229 Identities=26% Similarity=0.322 Sum_probs=160.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+..+..|.++.|+|.++.|++++|||++++||.....+. ....|..++.+++|.+ ...+++|+.||.|+++|+...
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~- 85 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTG- 85 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeeeccC--CceEEEeccCceEEEEEecCC-
Confidence 444556999999999999999999999999999887543 3457889999999964 457889999999999997532
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 194 (303)
....+..|.+++.++...+....+++||.|++|++||.|..........+...+..+ .....+.. ..+
T Consensus 86 ----~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~-------v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 86 ----NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMD-------VSGNRLVVGTSD 154 (323)
T ss_pred ----cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEe-------ccCCEEEEeecC
Confidence 233455799999999999888899999999999999999633333222211111111 11111111 112
Q ss_pred CcceEEecc----------cceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC----eEEEEeecCC--------
Q 022074 195 QSVATYKGH----------SVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHT-------- 252 (303)
Q Consensus 195 ~~~~~~~~~----------~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~----~~~~~~~~h~-------- 252 (303)
+.+..++-. .......||... -|++.=.+.++-||+|.+=..+.. ++-..|+.|.
T Consensus 155 r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~---~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESSLKYQTRCVAL---VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred ceEEEEEcccccchhhhccccceeEEEEEEE---ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 222222111 111223333322 234444788999999999887765 3445677774
Q ss_pred -CCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 253 -SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 253 -~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
-||++++|||-...||||+.||-+.+||+.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLF 262 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCc
Confidence 389999999999999999999999999965
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=170.99 Aligned_cols=200 Identities=23% Similarity=0.317 Sum_probs=159.9
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++|+.+|..+.|+|+++ .+++|+.|+.+++||+.++..+..+.+|++-|.|..++|.+++.++||+.||+||+||+|..
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 68999999999999765 57778889999999999998777889999999999999888899999999999999999843
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
. ..+ ....|..+|..+-+-|.|.+++++|. ..||+||+.....
T Consensus 187 ~---~~v-~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q-------------------------------- 229 (487)
T KOG0310|consen 187 T---SRV-VELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ-------------------------------- 229 (487)
T ss_pred C---cee-EEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce--------------------------------
Confidence 2 223 33468899999988999999999875 8999999863210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.....|.-..+++ .+..+++.|++|+-|+.+++||+.+-+.+..++ -.+||.+++.||+++.++.|..||
T Consensus 230 -ll~~~~~H~KtVTcL------~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 230 -LLTSMFNHNKTVTCL------RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred -ehhhhhcccceEEEE------EeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccc
Confidence 011111122122222 244567889999999999999998888888775 457999999999999999999999
Q ss_pred CEEEee
Q 022074 275 DVVRWE 280 (303)
Q Consensus 275 ~i~~Wd 280 (303)
.+-.=+
T Consensus 302 lv~~rr 307 (487)
T KOG0310|consen 302 LVSIRR 307 (487)
T ss_pred eeeeeh
Confidence 887654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=162.48 Aligned_cols=226 Identities=18% Similarity=0.253 Sum_probs=160.9
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.--|+.|+.+++|.+ ...+++|+-||.|+++|+.++.. .++..|..++.|+.+... ...+++|++|++|++||.|.
T Consensus 50 ~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~- 125 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRN- 125 (323)
T ss_pred heecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccc-
Confidence 358999999999996 56799999999999999999875 457789999999999754 55788999999999999873
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 193 (303)
......+. ....|.+++. .++.|+.|..|..+.+||+|.+...++. ....+.+..+.+..-|....... ..
T Consensus 126 ---~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSi 197 (323)
T KOG1036|consen 126 ---KVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSI 197 (323)
T ss_pred ---cccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEee
Confidence 11122221 2346777765 4668999999999999999987654422 12233444444433332111111 00
Q ss_pred ---------------CCcceEEeccccee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 194 ---------------DQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 194 ---------------~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
......++.|.... .++-......|+|-.+.|||||.||.|-+||+.+++.++.+......|
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI 277 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI 277 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCce
Confidence 11223344443221 111122334577777889999999999999999999998887777789
Q ss_pred EEEEECCCCCeEEEEeC
Q 022074 256 RDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~ 272 (303)
.+++|+.||..||.|+.
T Consensus 278 ~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeccCCCeEEEEec
Confidence 99999999999999986
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=161.96 Aligned_cols=236 Identities=21% Similarity=0.305 Sum_probs=171.5
Q ss_pred CchhhccccccccccCcCcc-cccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCceE--EEEecccCCeEE
Q 022074 12 SGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNT 86 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~ 86 (303)
..++|.++.|.++=.+.+.. ..+..||++||..++|.. .|.+||+++.||.|.||.-.+++.. .....|...|++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNS 107 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccccee
Confidence 45778888999986666533 445689999999999996 7999999999999999998888533 235578899999
Q ss_pred EEEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC---C-----------CEEEEEeCCCc
Q 022074 87 VCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD---G-----------RYLISNGKDQA 151 (303)
Q Consensus 87 l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~s~~~D~~ 151 (303)
++|.|. .+-.|++++.||.|.+.+.+.... .........|.-+|+++++.|. | ..|++||.|..
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~-w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGG-WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCC-ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 999763 366899999999999988763311 1223456679999999988775 4 56999999999
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
|+||+..... |.. -..+.+|... +-...+.|...--..++|++++|
T Consensus 187 VkiW~~~~~~-------------w~~-------------------e~~l~~H~dw--VRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 187 VKIWKFDSDS-------------WKL-------------------ERTLEGHKDW--VRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred eeeeecCCcc-------------hhh-------------------hhhhhhcchh--hhhhhhccccCCCceeeEEecCC
Confidence 9999875421 000 0012222210 11122334333335689999999
Q ss_pred CeEEEEECCCC-e--EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 232 SCVYVYDLVSG-E--QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~-~--~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|++-||-.... + +...++.-..+++.+.||+.|++|+.++.|+.+.+|.-.
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99999987522 1 122334455789999999999999999999999999854
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=168.10 Aligned_cols=226 Identities=19% Similarity=0.299 Sum_probs=174.0
Q ss_pred EEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc--CCeE
Q 022074 8 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT--SDVN 85 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~--~~v~ 85 (303)
++.+|+ |.-|-||-. +++........|+.+|..+..+|+|+|+++++.|++....|..++.........+ -.++
T Consensus 276 v~~aSa--d~~i~vws~--~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 276 VITASA--DEIIRVWSV--PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred eeecCC--cceEEeecc--ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 344444 445566655 2333344457999999999999999999999999999999999998665443322 2478
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+.+|+| ++..|.+|..||.|++||++..+ ....|.+|.++|..++|+.+|-+|+++..|++|++||||+++...+
T Consensus 352 s~~fHp-DgLifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 352 SAAFHP-DGLIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred EeeEcC-CceEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 889965 58899999999999999997432 4567889999999999999999999999999999999998763222
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC--CCe
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV--SGE 243 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~--~~~ 243 (303)
..+. ....+ .+..|...|++|+.+|+|=+|++++-. +..
T Consensus 427 ~~l~-----------------------~~~~v----------------~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 427 IQLD-----------------------EKKEV----------------NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred eecc-----------------------ccccc----------------eeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 1110 00000 012355678999999999888888854 445
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++..+..|.+..+.+.|....++++++|.|..+++.-+
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 67788889999999999999999999999999888653
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=181.78 Aligned_cols=222 Identities=25% Similarity=0.324 Sum_probs=171.4
Q ss_pred EEEccCchhhccccccccccCcCcc-cccCCCcccceEE-EEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCC
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFS-AADDGGYSFGIFS-LKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~-l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
.+-|++++-|....||+...+.-.. ..- .||..-|.. ++|-+ ++..+++|+.|.++.+|.+.+......+.+|...
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~-~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn 103 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAF-EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN 103 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceec-ccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccc
Confidence 3457888889889999874433221 223 334433444 77775 5556999999999999999998888889999999
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
|+++... .++. ++|||+|.++++|... ...-.+.+|..+|+++.+-|++ .++||+.|++||+|.=.
T Consensus 104 VC~ls~~-~~~~-~iSgSWD~TakvW~~~------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----- 169 (745)
T KOG0301|consen 104 VCSLSIG-EDGT-LISGSWDSTAKVWRIG------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----- 169 (745)
T ss_pred eeeeecC-CcCc-eEecccccceEEecch------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-----
Confidence 9999874 3344 8899999999999753 2334588999999999988887 79999999999999632
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
..+.++.||.. ++|.. .+-+ ...+++++.||.|+.|++ +|+
T Consensus 170 -------------------------------~~l~tf~gHtD---~VRgL---~vl~-~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 170 -------------------------------TLLKTFSGHTD---CVRGL---AVLD-DSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred -------------------------------chhhhhccchh---heeee---EEec-CCCeEeecCCceEEEEec-cCc
Confidence 12344555532 22211 1112 345899999999999999 788
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+.++.+|+.-|.+++..+++..++|+++|+++++|+..
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 888999999999999988999999999999999999864
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=185.67 Aligned_cols=216 Identities=21% Similarity=0.308 Sum_probs=159.8
Q ss_pred CCcccceE---EEEEc-CCCCEEEEeeCCCeEEEEECCCCce------EEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 36 GGYSFGIF---SLKFS-TDGRELVAGSSDDCIYVYDLEANKL------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 36 ~~~~~~v~---~l~~s-~~g~~l~sgs~Dg~v~lwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
..|..+|. ++..+ |++++|++||.||.|++|+...... ...+..|.+-|+.++... +++.|+|+|.|-+
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDTT 96 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCce
Confidence 35555555 56666 5677899999999999998866432 345678999999998854 4778999999999
Q ss_pred EEEEcCccccCCCccceeecccccCeEEEEe-CCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDS-RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
|++|+..... .....++..|.+.|.+++. .++..++||||-|+.|.+||+.........+.+..
T Consensus 97 VK~W~~~~~~--~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~------------- 161 (735)
T KOG0308|consen 97 VKVWNAHKDN--TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV------------- 161 (735)
T ss_pred EEEeecccCc--chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc-------------
Confidence 9999964221 1234456679999999998 77888999999999999999975422100000000
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
....+.. |+.. ..++.+..+.+..+++||.++.+++||.++++++..+.+|+..|..+-.++||
T Consensus 162 t~~sl~s----------G~k~------siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 162 TVNSLGS----------GPKD------SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred ccccCCC----------CCcc------ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence 0000000 1110 11122334567889999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCEEEeecCC
Q 022074 265 PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~ 283 (303)
+.++|+|.||+|++||+..
T Consensus 226 t~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred CeEeecCCCceEEeeeccc
Confidence 9999999999999999853
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-22 Score=173.02 Aligned_cols=210 Identities=21% Similarity=0.342 Sum_probs=158.1
Q ss_pred cccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCce----------EEEEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 38 YSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL----------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
|...|..+.+-|+.. .+++++..+.|.|||.....- -.++.+|.+.-..++|++...-.|++++.|++|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 556677777777544 677788899999999865321 136889988778899987666688899999999
Q ss_pred EEEcCccccCC---CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 107 KVWDRRCLNVK---GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 107 ~lWd~~~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
++||+...... ..+...+.+|.+.|..++|++ +..+|++++.|+.+.|||+|.. .....
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~--------------- 265 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPS--------------- 265 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCc---------------
Confidence 99998754432 345667889999999999987 4567899999999999999952 11110
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~s 261 (303)
....+|.....+ +.|+| .++..|||||.|++|++||+++.+ ++..+++|+..|..|.||
T Consensus 266 ---------------~~~~ah~~~vn~--~~fnp---~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS 325 (422)
T KOG0264|consen 266 ---------------HSVKAHSAEVNC--VAFNP---FNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS 325 (422)
T ss_pred ---------------ccccccCCceeE--EEeCC---CCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeC
Confidence 011112111111 12222 246789999999999999999875 488999999999999999
Q ss_pred CCC-CeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQ-PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~-~~las~s~Dg~i~~Wd~~~~ 284 (303)
|.. ..|||++.|+.+.+||+...
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred CCCCceeEecccCCcEEEEecccc
Confidence 985 58999999999999998654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=167.97 Aligned_cols=212 Identities=23% Similarity=0.354 Sum_probs=171.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc--
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC-- 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~-- 113 (303)
.||+.+|+.++-......+.++|.|.+.+||.++++....++.+|.+.|+++.|+ +.+.++++++.|++.++|....
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~ 223 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNW 223 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec-cccceEEEccCCcchHHHHHhhcC
Confidence 6999999999998877899999999999999999999999999999999999996 4688999999999999996210
Q ss_pred --cc----------------------------C----CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 114 --LN----------------------------V----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 114 --~~----------------------------~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.. . ...|...+.||...|.+.+|-..|.+++|++.|++..+||+..
T Consensus 224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt 303 (481)
T KOG0300|consen 224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET 303 (481)
T ss_pred cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence 00 0 0124456789999999999988999999999999999999875
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
... +..+.||...- ..|. -+|.++++++.+-|.+.++||.
T Consensus 304 ge~----------------------------------v~~LtGHd~EL--tHcs----tHptQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 304 GEV----------------------------------VNILTGHDSEL--THCS----THPTQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred Cce----------------------------------eccccCcchhc--cccc----cCCcceEEEEeccCceeEeccc
Confidence 332 22334443211 1111 2467899999999999999999
Q ss_pred CCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCC
Q 022074 240 VSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAP 289 (303)
Q Consensus 240 ~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~ 289 (303)
+.. ..+..|.+|++.|+++.|..+.+ +++|++|.++++||+..++....
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred hhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcce
Confidence 743 34788999999999999988765 78999999999999998866543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=189.22 Aligned_cols=202 Identities=28% Similarity=0.480 Sum_probs=173.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
..|...|.++..-..++.+++|++|..+.||....-.....+.+|..+|.++.|+.+ ..++++|+.+|+|++||+.
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~wDle--- 100 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKVWDLE--- 100 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcc-hhhhcccccCCceeeeehh---
Confidence 688899999888778889999999999999988665555668899999999999654 5688899999999999986
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
..+..+.+.||...+..++|+|-+.++++|+.|.-+++||.|+.-
T Consensus 101 -eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G---------------------------------- 145 (825)
T KOG0267|consen 101 -EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG---------------------------------- 145 (825)
T ss_pred -hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC----------------------------------
Confidence 455677899999999999999999999999999999999998532
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
+...+++|.....+ ..|+|+|++++.|++|..++|||...|+.+.+|+.|++++.++.|+|..-++++||.|++
T Consensus 146 c~~~~~s~~~vv~~------l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 146 CSHTYKSHTRVVDV------LRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred ceeeecCCcceeEE------EeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 23334443322222 237899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecC
Q 022074 276 VVRWEFP 282 (303)
Q Consensus 276 i~~Wd~~ 282 (303)
+++||+.
T Consensus 220 v~f~dle 226 (825)
T KOG0267|consen 220 VRFWDLE 226 (825)
T ss_pred eeeeccc
Confidence 9999986
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=169.22 Aligned_cols=202 Identities=23% Similarity=0.378 Sum_probs=162.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE--------EEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
|-..-+-|..|||||+++++||.||.|.+|+..+|++. ..+.-+++.|.|+.|+. +..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCcEEE
Confidence 55567889999999999999999999999999998754 23556788999999975 5789999999999999
Q ss_pred EcCccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 109 WDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
|.++ ++...+.|. .|..+|+++.|+.|+..+++++.|.++|+--+...+
T Consensus 290 Wri~----tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-------------------------- 339 (508)
T KOG0275|consen 290 WRIE----TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-------------------------- 339 (508)
T ss_pred EEEe----cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------------------------
Confidence 9976 344455565 699999999999999999999999999999876432
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQP 265 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~ 265 (303)
++..+.||..... ...|+++|..+++++.||+|++|+.++.+++.+++ +...+|+++..-|..+
T Consensus 340 --------~LKEfrGHsSyvn------~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp 405 (508)
T KOG0275|consen 340 --------CLKEFRGHSSYVN------EATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP 405 (508)
T ss_pred --------hHHHhcCcccccc------ceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC
Confidence 2334445542221 23477899999999999999999999999988886 3456899999888664
Q ss_pred -eEEEEeCCCCEEEeecCC
Q 022074 266 -MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 266 -~las~s~Dg~i~~Wd~~~ 283 (303)
.++.+...+++.+-++++
T Consensus 406 eh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 406 EHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ceEEEEcCCCeEEEEeccc
Confidence 677777778888877653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=178.80 Aligned_cols=201 Identities=24% Similarity=0.321 Sum_probs=160.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-----CceEE-------EEecccCCeEEEEEccCCCcEEEEecCC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-----~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
.+|+.+|.+++.+||++.+++||.|.+|++||..- +.... +...-...|.|+.++| ++++|+.+-.|
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLd 529 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLD 529 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEecc
Confidence 38999999999999999999999999999997642 21111 1222346799999975 58899999999
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
.+|++|=+... +..-.+.||.=+|.++++++|+.+++|||.|+.|++|-+.-..+. .
T Consensus 530 nTVkVyflDtl----KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH----K--------------- 586 (888)
T KOG0306|consen 530 NTVKVYFLDTL----KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH----K--------------- 586 (888)
T ss_pred CeEEEEEecce----eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhh----h---------------
Confidence 99999976532 334467799999999999999999999999999999977532211 1
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
++-+|+.. ++ +..|-|...++.++|.|+.|+-||-+..+++..+.+|...|++++.+|+
T Consensus 587 ---------------S~fAHdDS--vm----~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~ 645 (888)
T KOG0306|consen 587 ---------------SFFAHDDS--VM----SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN 645 (888)
T ss_pred ---------------hhhcccCc--ee----EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCC
Confidence 11111111 11 1224566788999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCEEEeec
Q 022074 264 QPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~ 281 (303)
|.+++|+|.|.+|++|.-
T Consensus 646 G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWER 663 (888)
T ss_pred CCeEEeccCCceeEeeec
Confidence 999999999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=172.22 Aligned_cols=219 Identities=18% Similarity=0.283 Sum_probs=157.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----EEec-ccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~----~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
-..+|+..|.++++.|.|-++++||.|-+|++||...-.... ++.. ....|+.+.|++ .++.|++.+...+.+|
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKL 240 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeE
Confidence 336899999999999999999999999999999997543221 1222 234689999965 5778888888889999
Q ss_pred EcCccccCCC-----cc---ceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeecee
Q 022074 109 WDRRCLNVKG-----KP---AGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 179 (303)
Q Consensus 109 Wd~~~~~~~~-----~~---~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (303)
+|........ +. .....||...+++..|+|.. +.|+|++.|+++|+||+...+.....
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV------------- 307 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV------------- 307 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-------------
Confidence 9964321100 01 11235899999999999864 56999999999999998754321110
Q ss_pred eeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---EEEEeecCCC--C
Q 022074 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAALKYHTS--P 254 (303)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~h~~--~ 254 (303)
+++...+ +.. .....|. |+++++++|+|..||.|.+||..+.. ..+.-++|.. .
T Consensus 308 ---------ik~k~~~------g~R--v~~tsC~----~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~ 366 (641)
T KOG0772|consen 308 ---------IKTKPAG------GKR--VPVTSCA----WNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD 366 (641)
T ss_pred ---------EeeccCC------Ccc--cCceeee----cCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc
Confidence 0000000 000 0111232 66789999999999999999975442 1334467876 8
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
|++++||+||++|+|-|.|+++++||+....+.
T Consensus 367 Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 367 ITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred eeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 999999999999999999999999999865433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=176.49 Aligned_cols=232 Identities=19% Similarity=0.287 Sum_probs=181.5
Q ss_pred chhhccccccccccCcCc-cccc---CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEE
Q 022074 13 GTMESLANVTEIHDGLDF-SAAD---DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNT 86 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~ 86 (303)
|.-|..|-+|.+-.-.++ +++. -..|+..|..+....+|+.++++|.|-+|++|+...+. ....+..|++-|.|
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkc 122 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKC 122 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhee
Confidence 445666666666333322 2111 14799999999999999999999999999999998774 23456789999999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCcccc------CCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLN------VKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~------~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+++--++..+++||+.|+.|.+||+.... .+..+...+. |+.++|.+++-++.|..|++||.++.+|+||.|.
T Consensus 123 la~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt 202 (735)
T KOG0308|consen 123 LAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT 202 (735)
T ss_pred eeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc
Confidence 99833567799999999999999986331 1112222333 8999999999999999999999999999999874
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+ .+..+.||......+ ..+.||..+++|++||+|++||+
T Consensus 203 ~~----------------------------------kimkLrGHTdNVr~l------l~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 203 CK----------------------------------KIMKLRGHTDNVRVL------LVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cc----------------------------------ceeeeeccccceEEE------EEcCCCCeEeecCCCceEEeeec
Confidence 22 233444554322222 24678999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 240 ~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....++.++..|+..||++.-+|+-..+.+|+.||.|..=|+...
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999999999999999888754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=172.00 Aligned_cols=232 Identities=21% Similarity=0.324 Sum_probs=171.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.--|.++.+.|||+.|++|+.-.++.|||+..-.... ++......+.+++.++ +.++++++..||.|++||+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh---- 539 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH---- 539 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc----
Confidence 3458899999999999999999999999998765332 2222234566777765 57899999999999999986
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+...++.|+||.+++.|++++++|..|-|||-|.+||.||+|........ .|.+ ++..+.+.|+...+...+...
T Consensus 540 nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh--dF~S---QIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 540 NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH--DFSS---QIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh--hhhh---hheecccCCCccceeeecccC
Confidence 34567889999999999999999999999999999999999975443222 1111 112233445555444443322
Q ss_pred -ceEEecccceee----eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 197 -VATYKGHSVLRT----LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 197 -~~~~~~~~~~~~----~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
+..+.-....++ ...|..+..|++-|+++++-|.|.-+-.|..--|..+...+ -..+|.+|+.|.|.++++|||
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecC
Confidence 111110000011 12355677788899999999999999999988888777665 346899999999999999999
Q ss_pred CCCCEEEeec
Q 022074 272 WDGDVVRWEF 281 (303)
Q Consensus 272 ~Dg~i~~Wd~ 281 (303)
.|....++.+
T Consensus 694 GdkkATVYeV 703 (705)
T KOG0639|consen 694 GDKKATVYEV 703 (705)
T ss_pred CCcceEEEEE
Confidence 9999988875
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=162.05 Aligned_cols=209 Identities=21% Similarity=0.366 Sum_probs=153.7
Q ss_pred CcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCC----------------ceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEAN----------------KLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~----------------~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+|...+.-+.-++-|+ ..++=+..|.|.||++... +.+.++.+|.+.-..++|+|-..-.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 7777888877776554 4555567899999998642 123456788888899999875555788
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
||..-+.|++|......-. .-...+.+|..+|-.+.++| ....|+|||.|++|||||+|......
T Consensus 229 sGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~------------- 294 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA------------- 294 (440)
T ss_pred cCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-------------
Confidence 9999999999976432110 11235778999999999988 45789999999999999998642111
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC---CeEEEEeecCCCC
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---GEQVAALKYHTSP 254 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~---~~~~~~~~~h~~~ 254 (303)
++. .+.|.....++ .++....+||+|+.||+++|||+++ ++.+..|+.|..|
T Consensus 295 ------------------~~~-~kAh~sDVNVI------SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 295 ------------------AVS-TKAHNSDVNVI------SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ------------------eeE-eeccCCceeeE------EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 011 12222222222 1333445899999999999999975 4578899999999
Q ss_pred eEEEEECCCC-CeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+++.|+|.. ..|+++|+|..|.+||+...
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999975 57899999999999998654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=171.93 Aligned_cols=246 Identities=25% Similarity=0.321 Sum_probs=167.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
....|.-+|+.+.|-|....|++++.|.++++||+++.++... ..+|..-|..+||.+.+...|++|+.||.+.|||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 4468999999999999777899999999999999999887655 78999999999999888899999999999999998
Q ss_pred ccccCC--------------C--ccc-------eeecccccCeEE---EEeCCCCCEEEEEeC-CCcEEEEEcccccCCc
Q 022074 112 RCLNVK--------------G--KPA-------GVLMGHLEGITF---IDSRGDGRYLISNGK-DQAIKLWDIRKMSSNA 164 (303)
Q Consensus 112 ~~~~~~--------------~--~~~-------~~~~~h~~~v~~---~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~ 164 (303)
++.... . .+. .....|...+.. +.+..|...|+++|. |+.|++||+|+.....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 753210 0 000 011123333333 335567788998887 9999999999753321
Q ss_pred ccc----cCccce---eeeceeeeCCCCCccc-cCCCCCcceEEe-------------cccceeeeEEEeeeeeeeCCCe
Q 022074 165 SCN----LGFRSY---EWDYRWMDYPPQARDL-KHPCDQSVATYK-------------GHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 165 ~~~----~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
... ..+... ...+..+.....+..+ +.+.+..|..++ |+.......+ -..++++.
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk----s~lSpd~~ 330 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK----SELSPDDC 330 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee----eecCCCCc
Confidence 110 000000 0011111111112222 222233343332 2221111111 12468999
Q ss_pred EEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
++++|+.|...++|.+.+-+. ...+.+|...|++++|.|..- -++|+++|..+++|++..
T Consensus 331 ~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 331 SLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 999999999999999988765 566789999999999998653 477779999999999843
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-22 Score=183.12 Aligned_cols=195 Identities=30% Similarity=0.414 Sum_probs=161.9
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||+.+|.++.|++....|++|+.+|+|++||+..++....+.+|...+..+.|+| .+.++++|+.|+.+++||.+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~R-- 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIR-- 142 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhh--
Confidence 389999999999999999999999999999999999998889999999999999964 68899999999999999987
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.......+.+|...|..+.++|+|.++++++.|.++++||++..+.... |...+
T Consensus 143 --k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e----f~~~e-------------------- 196 (825)
T KOG0267|consen 143 --KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE----FKSHE-------------------- 196 (825)
T ss_pred --ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc----ccccc--------------------
Confidence 2334667888999999999999999999999999999999975432111 10000
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+. .+.|+|..-++++||.|+++++||+++.+.+...+.-...|.+.+|+|++..+++|..+.
T Consensus 197 ~~v~----------------sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 197 GKVQ----------------SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred cccc----------------ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 0111 122445567899999999999999999998888777778999999999999999887653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=178.36 Aligned_cols=222 Identities=21% Similarity=0.294 Sum_probs=166.9
Q ss_pred cccccccccc-CcCcccccCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 17 SLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 17 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
..|+||++=. +.+.+-.+.+-|+..+.+++|++. ..+|++||+||+|++||++..+-...+.+....|..|.|+|..+
T Consensus 110 G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~ 189 (839)
T KOG0269|consen 110 GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYG 189 (839)
T ss_pred CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCC
Confidence 3457888722 112222355789999999999975 55899999999999999998876667777778899999998888
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
+.|+++..+|.+.+||+| +..+....+..|.+.|.++.++|++.+|||||+|+.|+|||+.........
T Consensus 190 ~~F~s~~dsG~lqlWDlR---qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-------- 258 (839)
T KOG0269|consen 190 NKFASIHDSGYLQLWDLR---QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-------- 258 (839)
T ss_pred ceEEEecCCceEEEeecc---CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee--------
Confidence 999999999999999998 344555567889999999999999999999999999999998642211100
Q ss_pred eeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe--CCCeEEEEECCCCe-EEEEeecC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGE-QVAALKYH 251 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~--~dg~i~iwd~~~~~-~~~~~~~h 251 (303)
.+. +. ..+-+..|.|..+ .+||+++ .|..|+|||++-.- +..++..|
T Consensus 259 ---------------------tIn--Ti----apv~rVkWRP~~~---~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 259 ---------------------TIN--TI----APVGRVKWRPARS---YHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred ---------------------EEe--ec----ceeeeeeeccCcc---chhhhhhccccceEEEEeeccccccceeeecc
Confidence 000 00 1122334445432 4577775 58899999996432 36678899
Q ss_pred CCCeEEEEECCCC-CeEEEEeCCCCEEEe
Q 022074 252 TSPVRDCSWHPSQ-PMLVSSSWDGDVVRW 279 (303)
Q Consensus 252 ~~~I~~v~~sp~~-~~las~s~Dg~i~~W 279 (303)
..-++.++|-... -.|.+++-|+++..-
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHh
Confidence 9999999997643 478899999887644
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=161.41 Aligned_cols=202 Identities=14% Similarity=0.247 Sum_probs=160.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..|+-.|.-+.||++|++||++|.|.+..+|++..... ..++.+|..+|..+.|+|+ +++|++|+.|..+++||..
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv~ 299 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDVD 299 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccCC
Confidence 58999999999999999999999999999998876554 5678899999999999875 6788889988899999986
Q ss_pred cccCCCccceee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.+. ....+ .+|..++.+++|.|||..+++|+.|+++..||+..-.
T Consensus 300 tgd----~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~------------------------------ 345 (519)
T KOG0293|consen 300 TGD----LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI------------------------------ 345 (519)
T ss_pred cch----hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch------------------------------
Confidence 332 12122 2356789999999999999999999999999986311
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
...+.|... .+....+.++||+++++.+.|..|++++.++....+... -+.+|++...|.|++++...=
T Consensus 346 -----~~~W~gvr~-----~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 346 -----LGNWEGVRD-----PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred -----hhccccccc-----ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc
Confidence 111111110 111223456899999999999999999998876665444 345899999999999999999
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.+.++++||++.
T Consensus 415 ~~qei~LWDl~e 426 (519)
T KOG0293|consen 415 QDQEIHLWDLEE 426 (519)
T ss_pred ccCeeEEeecch
Confidence 999999999873
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=155.61 Aligned_cols=207 Identities=23% Similarity=0.309 Sum_probs=149.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE----EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
-||...|.+++|+.||++|++++.|++||||+++.-... .+..-.-+.-+.+.|.|++...+++.....++++|..
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 499999999999999999999999999999999774321 0111111346788999888888888888889999965
Q ss_pred ccccCCCc------cce---eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 112 RCLNVKGK------PAG---VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 112 ~~~~~~~~------~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
.-.+ .+. +.. ...-|.-.+-.+-+...+.+|++++.|..|.||+++... ..+.
T Consensus 163 ~K~~-dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~-L~~i---------------- 224 (420)
T KOG2096|consen 163 VKKT-DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL-LQSI---------------- 224 (420)
T ss_pred eecc-cCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce-eeee----------------
Confidence 2110 110 111 111244445556667788999999999999999997321 1100
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC---CC-----eEEEEeecCCCC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV---SG-----EQVAALKYHTSP 254 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~---~~-----~~~~~~~~h~~~ 254 (303)
.+ .+. .......||+|+++++++-.-.+++|.+- .| +.+..+++|+..
T Consensus 225 ---------------dt---nq~------~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa 280 (420)
T KOG2096|consen 225 ---------------DT---NQS------SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA 280 (420)
T ss_pred ---------------cc---ccc------cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence 00 000 00112368999999999999999999863 33 245678999999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|..++||++.+.++|+|-||+.++||..--
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 999999999999999999999999997644
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=168.58 Aligned_cols=214 Identities=21% Similarity=0.249 Sum_probs=162.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
++-+||+.-|.++++|.+...+++|+. +.+++|+.++.+...++.. +-+-+..|.| .++++++|..+|.+-+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEee
Confidence 455899999999999988877777654 4699999999887665543 2566777864 57899999999999999986
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
+. ........|.++++.++..||+..++|||.|++|++||......... +
T Consensus 443 S~----~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~g--------------------t------ 492 (888)
T KOG0306|consen 443 SA----SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPG--------------------T------ 492 (888)
T ss_pred hh----hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCc--------------------c------
Confidence 32 22334557999999999999999999999999999999764321000 0
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
..++..+..... ..+..-..+..+|||+++||.+--|.+++||-+++.+..-.+=+|.-||.++..|||.++++|||.
T Consensus 493 -~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 493 -QKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred -cceeeeeccceE-EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 000001100000 001111123457899999999999999999999999887777799999999999999999999999
Q ss_pred CCCEEEeecC
Q 022074 273 DGDVVRWEFP 282 (303)
Q Consensus 273 Dg~i~~Wd~~ 282 (303)
|.++++|-++
T Consensus 571 DKnVKiWGLd 580 (888)
T KOG0306|consen 571 DKNVKIWGLD 580 (888)
T ss_pred CCceEEeccc
Confidence 9999999764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=177.51 Aligned_cols=208 Identities=21% Similarity=0.346 Sum_probs=155.5
Q ss_pred eEEEEEc-CCCCEEEEeeCCCeEEEEECCC---CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFS-TDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s-~~g~~l~sgs~Dg~v~lwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
...+.|+ -+.+.|++++..|.|.+||+.. .++...+..|...++++.|++-.+++|+|||.||+|++||+|..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--- 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK--- 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc---
Confidence 3446666 3577899999999999999977 34444567899999999998878899999999999999999832
Q ss_pred CccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
....++.+..++|..+.|+| .+.+|+++...|.+++||+|.... +
T Consensus 167 -~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------------------------------~ 212 (839)
T KOG0269|consen 167 -KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------------------------------C 212 (839)
T ss_pred -cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh---------------------------------H
Confidence 33445667888999999987 477899999999999999996432 1
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCC-eEEEEeC-
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSSSW- 272 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~-~las~s~- 272 (303)
...+..|.... ++..++|++.+|||||-|+.|+|||..+.+. +.++ ....||..|+|=|..+ .|||++.
T Consensus 213 ~~k~~AH~GpV------~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 213 EKKLTAHNGPV------LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred HHHhhcccCce------EEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhcc
Confidence 11122222111 1223678899999999999999999986543 3333 2457999999999877 4777664
Q ss_pred -CCCEEEeecCCCCccCCCCcc
Q 022074 273 -DGDVVRWEFPGNGEAAPPLNK 293 (303)
Q Consensus 273 -Dg~i~~Wd~~~~~~~~~~~~~ 293 (303)
|-.|++||+.-++-.-.-+.+
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ccceEEEEeeccccccceeeec
Confidence 889999998765444333333
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=159.63 Aligned_cols=205 Identities=25% Similarity=0.356 Sum_probs=157.1
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceE---EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+||...=++|+|||- -..+++|..-+.|++|...++... ..+.+|+..|..++|+|....+|+|||-||+|+|||+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 599999999999983 225888888889999999887643 3467899999999999888889999999999999999
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
|... .++.-....|...|+.++|+..-.+|++|+.||+++|||||..+.
T Consensus 288 Rs~~--~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~----------------------------- 336 (440)
T KOG0302|consen 288 RSGP--KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS----------------------------- 336 (440)
T ss_pred cCCC--ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC-----------------------------
Confidence 8542 223334467989999999999888999999999999999996432
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-------E-EE--------EeecC--CC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-------Q-VA--------ALKYH--TS 253 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-------~-~~--------~~~~h--~~ 253 (303)
.+.++.++-|...++.+.++. .+...|+++|+|..|.+||+.... . .. -+-.| +.
T Consensus 337 --~~pVA~fk~Hk~pItsieW~p-----~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk 409 (440)
T KOG0302|consen 337 --GQPVATFKYHKAPITSIEWHP-----HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK 409 (440)
T ss_pred --CCcceeEEeccCCeeEEEecc-----ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh
Confidence 235667777766666555432 245678999999999999985321 0 00 11234 35
Q ss_pred CeEEEEECCCCC-eEEEEeCCCCEEE
Q 022074 254 PVRDCSWHPSQP-MLVSSSWDGDVVR 278 (303)
Q Consensus 254 ~I~~v~~sp~~~-~las~s~Dg~i~~ 278 (303)
.+..+.|+++-+ +|+|.+.||--.+
T Consensus 410 e~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 410 EVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred HhhhheeccCCCCeEEEecccceeEE
Confidence 799999999976 8888888875443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=155.94 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=148.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce--EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
+-|.-.|.++.|+|...+|++|+.|++|++||...... ..+......+|.++.|+| .++.++.|..-.++++||+..
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCCceeEEeccc
Confidence 46788999999999999999999999999999865322 223344556899999964 689999999999999999753
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
...-. ..-.-.+|.++|+++..++.+++.+|++.||.|+|||=-.-++..+....
T Consensus 248 ~Qcfv-sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A------------------------ 302 (430)
T KOG0640|consen 248 YQCFV-SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA------------------------ 302 (430)
T ss_pred eeEee-ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh------------------------
Confidence 21100 01123479999999999999999999999999999994322111111000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-------------------------
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL------------------------- 248 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~------------------------- 248 (303)
|... ...+..|+.+++|+++.|.|..+++|.+.++.++.++
T Consensus 303 ---------H~gs-----evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 303 ---------HGGS-----EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVL 368 (430)
T ss_pred ---------cCCc-----eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEE
Confidence 0000 0112345556666666666666666666555333222
Q ss_pred ------------------------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 249 ------------------------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 249 ------------------------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
-+|++++..+.-||.++-+.|+|.|..+++|--.
T Consensus 369 ~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 1488999999999999999999999999999743
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=163.96 Aligned_cols=237 Identities=19% Similarity=0.234 Sum_probs=167.6
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|+..+..+.|-++...|++|+.|..|.+|+....+ ....+.+..+.++.+.|.+ .++.+++++.|+.+++|+..
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd-- 249 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVD-- 249 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeecc--
Confidence 799999999999999999999999999999998776 3445667778899999965 47788899999999999975
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
..+....+.||.+.|+++.+......+++|+.|+++++||+.+..+..+.. +.+...++..- ....+..-.+
T Consensus 250 --~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~----~~~~~SgH~D 321 (459)
T KOG0288|consen 250 --SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS----ISDVISGHFD 321 (459)
T ss_pred --chhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEec----ceeeeecccc
Confidence 334566789999999999998776669999999999999998743221110 00000000000 0000000012
Q ss_pred CcceEEeccccee--ee--EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCeEEEEECCCCCe
Q 022074 195 QSVATYKGHSVLR--TL--IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHPSQPM 266 (303)
Q Consensus 195 ~~~~~~~~~~~~~--~~--~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----~~~I~~v~~sp~~~~ 266 (303)
.++..++...... .+ -.-..+...++++..+.+.+-|.++.+.|.++.+....+.+. ....+.+.|||++.|
T Consensus 322 kkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred cceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 2233332111100 00 001123446788889999999999999999988776666432 134899999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
+|+||.||.+++|++.+.
T Consensus 402 vaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTG 419 (459)
T ss_pred eeeccCCCcEEEEEccCc
Confidence 999999999999998754
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=153.41 Aligned_cols=242 Identities=23% Similarity=0.378 Sum_probs=162.9
Q ss_pred CcccceEEEEEcCC----CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTD----GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
-|+-..+.++|+-+ .-++|+|+.-|.|||.|+..++....+.+|...|+.+.+.|..+++++++|+|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 35556999999964 23788999999999999999999999999999999999999888999999999999999986
Q ss_pred cccCCCcccee---ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc--cccCc----cceeeeceeeeCC
Q 022074 113 CLNVKGKPAGV---LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS--CNLGF----RSYEWDYRWMDYP 183 (303)
Q Consensus 113 ~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~--~~~~~----~~~~~~~~~~~~~ 183 (303)
. ...+.. +.||.+.|.+++|+.+|.+|+++|.|.++++|++....-... +...+ ....+......+|
T Consensus 167 ~----~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 167 T----DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred C----CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 2 222322 467999999999999999999999999999999873110000 00000 0000000000111
Q ss_pred CC-Cc----------------cccCCCCCcceEEecccc------------eeeeEE------E-eeee--eeeCCCeEE
Q 022074 184 PQ-AR----------------DLKHPCDQSVATYKGHSV------------LRTLIR------C-HFSP--VYSTGQKYI 225 (303)
Q Consensus 184 ~~-~~----------------~~~~~~~~~~~~~~~~~~------------~~~~~~------~-~~~~--~~s~~~~~l 225 (303)
.- +. .+.-.|++.+..+..... ..+++. | .|-. .|.+-++.|
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 00 00 001112222222221000 000000 0 0111 234557889
Q ss_pred EEEeCCCeEEEEECCCCeEE--EEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 226 YTGSHDSCVYVYDLVSGEQV--AALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~--~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|.|.+.|.+++||+++.++. .++. .-...|...+||.|+.+|+..++|+++..||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999877652 2222 123579999999999999999999999999953
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=170.25 Aligned_cols=240 Identities=27% Similarity=0.359 Sum_probs=174.1
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC--CcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+-+.+|.+++.+|+|++|++|..-|+++|||+..-.....+..|...|-|+.|+.+. .++|++++.|..|+++|..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~-- 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK-- 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc--
Confidence 556799999999999999999999999999998887777888999999999996543 5789999999999999974
Q ss_pred cCCCccceeecccccCeEEEEeCCCC--CEEEEEeCCCcEEEEEcccccCCcccccCcccee-eeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE-WDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 191 (303)
.+--+...+.+|..+|+++.|.-.| ..++++|.|+.+.+=--++......+........ -.+--++..|..+.+..
T Consensus 535 -rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 -RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred -cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 2234567788999999999987766 6789999998875432221110000000000000 00001233333333322
Q ss_pred CC-CCcc-----------eEEecccce-eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 022074 192 PC-DQSV-----------ATYKGHSVL-RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC 258 (303)
Q Consensus 192 ~~-~~~~-----------~~~~~~~~~-~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v 258 (303)
.| ++.+ ..++|.... -..++.. ..|.|-|+||...|+++.++|..+|+++..+-+|...|+.+
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~----lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI----LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGV 689 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEE----ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeee
Confidence 22 2222 233333221 1222222 34678999999999999999999999999999999999999
Q ss_pred EECCCCCeEEEEeCCCCEEEeecCC
Q 022074 259 SWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 259 ~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|++|.+.|++++.||-|-+|.++.
T Consensus 690 kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 690 KFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=148.48 Aligned_cols=198 Identities=19% Similarity=0.317 Sum_probs=142.0
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
.+++|..+++.+.|+. ++++|+|+++|.+..+|= ..+++.++.+.||.++|+++++..+..+++||+.|.+++||
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~----s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWY----SLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEE----ecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 4678999999999975 589999999999999995 24677899999999999999999999999999999999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC------cceEEe---------cccceeeeE---EEeeeee
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ------SVATYK---------GHSVLRTLI---RCHFSPV 217 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~---~~~~~~~ 217 (303)
|+...+..+....+.. ++.+.+...........+. .+..++ .......+. .-.....
T Consensus 80 Dv~tGk~la~~k~~~~-----Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSP-----VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred EcCCCcEEEEeecCCe-----eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 9987665444322211 1112222222211111100 000000 000000000 0011233
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++|-++++++|.+||.|.+||.++|++ +..-+.|...|+++.||||..+++|+|.|.+.++||+..
T Consensus 155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence 567789999999999999999999866 445578999999999999999999999999999999753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-20 Score=159.89 Aligned_cols=213 Identities=17% Similarity=0.212 Sum_probs=152.6
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.||+.+|.+++|+.+ .+.|++||.|.+|.+||+.+++....+..|.+.|.++.|++..+..|++|+.|++|++.|.|..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 489999999999976 4478999999999999999999887777899999999999888999999999999999998843
Q ss_pred cCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
...+... ...+.|-.+.|.+.. ..++++..||+|+-+|+|...
T Consensus 320 ~~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------------------------------- 363 (463)
T KOG0270|consen 320 SNSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------------------------------- 363 (463)
T ss_pred cccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------------------------------
Confidence 2222111 123445566666543 468888899999999998642
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCC-eEEEE
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQP-MLVSS 270 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~-~las~ 270 (303)
.++.+.+.|...+..+.. ++ ..-.+++|++.|+.+++|++..-+. ++....-.+...|.++.|+-. +||.|
T Consensus 364 -~~vwt~~AHd~~ISgl~~--n~---~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 364 -KPVWTLKAHDDEISGLSV--NI---QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred -CceeEEEeccCCcceEEe--cC---CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEec
Confidence 123333334322211111 10 1124799999999999999864332 222222224577888888876 68999
Q ss_pred eCCCCEEEeecCCCCccCCC
Q 022074 271 SWDGDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~~~~~~~ 290 (303)
+..+.+++||.....+-.+.
T Consensus 438 G~k~~~~vwd~~~~~~V~ka 457 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTNSPVRKA 457 (463)
T ss_pred CccceEEEeecccChhHHHh
Confidence 99999999998765444333
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=163.34 Aligned_cols=247 Identities=19% Similarity=0.268 Sum_probs=168.7
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--------ceEEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
+..-|...|..+.|.+....+++++.||++.+|.+... ....++.+|.++|-|++. +.+++.+++|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-PSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-cCCceEEEeeccCce
Confidence 33567788999999999999999999999999999321 134678899999999999 567899999999999
Q ss_pred EEEEcCcc------ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC--C-cccccCccceeee
Q 022074 106 CKVWDRRC------LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS--N-ASCNLGFRSYEWD 176 (303)
Q Consensus 106 v~lWd~~~------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~--~-~~~~~~~~~~~~~ 176 (303)
|+.|++.. ..........+.||.++|+.+++++....|++++.||++|+|+...... . ..+..++ ...++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~-Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGY-PLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCC-cceEe
Confidence 99996531 1111123457889999999999998888899999999999998765433 0 0011111 11111
Q ss_pred ceeee--CCCCCccccC--C----CCCcceEEeccc--ceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 177 YRWMD--YPPQARDLKH--P----CDQSVATYKGHS--VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 177 ~~~~~--~~~~~~~~~~--~----~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
..... .......... . ....+..+.... ........ ...+-+|.+.+.+++.+|+.|+++|..+++.+.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~i-n~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQI-NKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCcc-ceEEecCCCCeeEecccCCceecccccccccch
Confidence 00000 0000000000 0 000001110000 00000000 001124567789999999999999999999999
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
....|...++++++-|+|.+|.+++.||.+++|....
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 9999999999999999999999999999999999753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=169.83 Aligned_cols=199 Identities=19% Similarity=0.290 Sum_probs=139.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||..-|+.|+||.+ ++|+++|.|.|||||.+.... ....+.|.+.|+|++|+|.++++|+||+.||.||||++.
T Consensus 366 ~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~--- 440 (712)
T KOG0283|consen 366 KGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS--- 440 (712)
T ss_pred hccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC---
Confidence 399999999999964 689999999999999998665 446789999999999999999999999999999999974
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc---e-eeeceeeeC-CCCC-ccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS---Y-EWDYRWMDY-PPQA-RDL 189 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~-~~~ 189 (303)
..+ +.....-.+-|+++.+.|+|++.+.|+.+|.+++|+++..+...+....... . .-.+..+.+ +... +.+
T Consensus 441 -d~~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL 518 (712)
T KOG0283|consen 441 -DKK-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL 518 (712)
T ss_pred -cCe-eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence 222 2222223367999999999999999999999999998765432221110000 0 000111122 2222 234
Q ss_pred cCCCCCcceEEec--ccceeeeEE-----EeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 190 KHPCDQSVATYKG--HSVLRTLIR-----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 190 ~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
....+..+..+++ ...+.+... ......|+.||+++++|++|..|++|+...
T Consensus 519 VTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 519 VTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 4445556666666 332222111 112345788999999999999999999743
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-19 Score=164.45 Aligned_cols=211 Identities=19% Similarity=0.276 Sum_probs=149.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEecccCC-------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSD------------------------------- 83 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~------------------------------- 83 (303)
++|+.+...|+|.|+|++|++++.||.|++|+.... .....+..+...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 589999999999999999999999999999977554 222112113333
Q ss_pred ---------eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 84 ---------VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 84 ---------v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
+++++++ .++++++.||.|=.|++-+.. .......+.+|.+.|.+++++|.+++||+.+.||.|++
T Consensus 90 ~iL~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~----D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD----DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ceeeeeeccceEEEEe-cCCcEEEeecCceeEEEEecc----ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 3444442 234455555555555554432 22345567789999999999999999999999999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeE
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i 234 (303)
||+................+ . ...+.+..+.|+|++..|+..+.|+.|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~------------------------------~--~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNE------------------------------F--ILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred EEcccchhhhhcccCCcccc------------------------------c--cccceeeeeeecCCCCeEEeeccCCeE
Confidence 99975322111100000000 0 002233346688888888999999999
Q ss_pred EEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 235 YVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+|+....+..+.+. .+..-+.++.|||.|.|||+++.||.|.+||++.
T Consensus 213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999999988877664 3445599999999999999999999999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-19 Score=167.32 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=176.5
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEee--CCCeEEEEECCCC------------ceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGS--SDDCIYVYDLEAN------------KLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs--~Dg~v~lwd~~~~------------~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
.+..=++..|++|+.+|||..+++|+ .|+.++||+.+.= +...++..|.+.|+|+.|++ ++++|+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~lA 85 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYLA 85 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeEe
Confidence 44444556799999999999999999 8999999976431 12345678999999999974 699999
Q ss_pred EecCCCeEEEEcCcc------cc--------CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 99 SGSDDNLCKVWDRRC------LN--------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 99 s~s~dg~v~lWd~~~------~~--------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+|+.|+.|-+|+... .. ...+....+.+|...|..+.|+|++.+|+++|.|++|.+||.+......
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999998651 00 0112455778999999999999999999999999999999988753221
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCC-CCcceEEeccc-ceeeeEE----------EeeeeeeeCCCeEEEEEe---
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHS-VLRTLIR----------CHFSPVYSTGQKYIYTGS--- 229 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~----------~~~~~~~s~~~~~latg~--- 229 (303)
. +..+..-+....+.|.++.++... ++.+..+.-.. ...+.+. .+..+.+||||++|++..
T Consensus 166 v----l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 166 V----LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred e----eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 1 122222233455566666665543 34444444111 1122222 122355789999998863
Q ss_pred -CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC------C-------C----eEEEEeCCCCEEEeecCCC
Q 022074 230 -HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS------Q-------P----MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~------~-------~----~las~s~Dg~i~~Wd~~~~ 284 (303)
.-.++.|.+-.+.+.-..|-+|.+|+++++|+|. . . .+|+||.|++|.+|....+
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2445777776666667778899999999999982 1 1 6899999999999997543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=155.45 Aligned_cols=200 Identities=24% Similarity=0.418 Sum_probs=151.6
Q ss_pred EEEEEcC-------CCCEEEEeeCCCeEEEEECCCCceE---E------------------EEecccCCeEEEEEccCCC
Q 022074 43 FSLKFST-------DGRELVAGSSDDCIYVYDLEANKLS---L------------------RILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 43 ~~l~~s~-------~g~~l~sgs~Dg~v~lwd~~~~~~~---~------------------~~~~h~~~v~~l~~~~~~~ 94 (303)
.|+.|.- .|+++|.|+.|..|-|||+.--... . ...+|++.|..+.|+....
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666652 3789999999999999998632211 0 0235888899999987778
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+.|+|||.|.+|++||+. ++++...+.-|...|.++.|++. ..+|++|+.|++|++.|.|..... +.
T Consensus 257 nVLaSgsaD~TV~lWD~~----~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--------~~ 324 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVD----TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--------GK 324 (463)
T ss_pred eeEEecCCCceEEEEEcC----CCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--------Cc
Confidence 899999999999999986 55667777778999999999874 577999999999999999852110 11
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCC
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHT 252 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~ 252 (303)
.|. ++|. +.+..+.+ + ....++++..||+++-+|+++. +++.+++.|.
T Consensus 325 ~wk-----------------------~~g~-----VEkv~w~~-~--se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 325 EWK-----------------------FDGE-----VEKVAWDP-H--SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred eEE-----------------------eccc-----eEEEEecC-C--CceeEEEecCCceEEeeecCCCCCceeEEEecc
Confidence 111 1111 11111221 1 1245778899999999999875 7799999999
Q ss_pred CCeEEEEECCCCC-eEEEEeCCCCEEEeecCCCC
Q 022074 253 SPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 253 ~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~~ 285 (303)
++|.++++++.-+ +|+|++.|+++++|++....
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 9999999999865 79999999999999997653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=146.77 Aligned_cols=220 Identities=20% Similarity=0.257 Sum_probs=153.0
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce------E----EE-----EecccCCeEEEEEccCCCcEEEE
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL------S----LR-----ILAHTSDVNTVCFGDESGHLIYS 99 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~------~----~~-----~~~h~~~v~~l~~~~~~~~~l~s 99 (303)
..|.++|.++...+ .|+++++|+.||.|.+||++.... . .. -.+|...|..+.|-|-+.-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 78999999999997 588999999999999999987541 1 10 12467789999998766668889
Q ss_pred ecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC---CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeee
Q 022074 100 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWD 176 (303)
Q Consensus 100 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~ 176 (303)
++.|.++++||.... +..-.| .-.+.|..-+.+| .-.++++|.+|-+||+.|+.... +
T Consensus 120 sSFDhtlKVWDtnTl----Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----~---------- 180 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL----QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----F---------- 180 (397)
T ss_pred ccccceEEEeecccc----eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----c----------
Confidence 999999999996421 111122 1223333333332 23478889999999999986422 1
Q ss_pred ceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEe-------
Q 022074 177 YRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAAL------- 248 (303)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~------- 248 (303)
--++.||.. .++...|+|. ..-.|++|+.||.|++||++.- -+...+
T Consensus 181 --------------------sH~LsGHr~--~vlaV~Wsp~---~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 181 --------------------SHTLSGHRD--GVLAVEWSPS---SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred --------------------eeeeccccC--ceEEEEeccC---ceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 123444542 2333344442 2456899999999999998643 112222
Q ss_pred -------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCCCccc-ccccc
Q 022074 249 -------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKK-RIRRR 299 (303)
Q Consensus 249 -------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~~~~~-~~~~~ 299 (303)
..|.+.++.++|+.++.++++.+.|..+++|+....+....++.+. +.++.
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 2567889999999999999999999999999987776666665443 33333
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=145.75 Aligned_cols=240 Identities=20% Similarity=0.323 Sum_probs=181.1
Q ss_pred eEEEEEcc---CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC---EEEEeeCCCeEEEEECCCCceEEEE
Q 022074 4 IVHIVDVG---SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 4 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~---~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
|-.|.|-| ++|||+...||+. +-.++.++--.+.-|++-++||-.. .+|+|..|-.|+|=|+..|.....+
T Consensus 108 ~WyP~DtGmFtssSFDhtlKVWDt---nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~L 184 (397)
T KOG4283|consen 108 IWYPIDTGMFTSSSFDHTLKVWDT---NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTL 184 (397)
T ss_pred EEeeecCceeecccccceEEEeec---ccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeee
Confidence 45677777 7999999999998 7677677777778899999998543 5777888889999999999999999
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc-------cC-C-Ccc--ceeecccccCeEEEEeCCCCCEEEEE
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL-------NV-K-GKP--AGVLMGHLEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~-------~~-~-~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~ 146 (303)
.+|.++|-++.|+|...-.|++|+.||.||+||+|-. .+ + .++ ...-..|.+.|..+++..++.+++++
T Consensus 185 sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhc
Confidence 9999999999999887888999999999999998621 00 1 111 11234588899999999999999999
Q ss_pred eCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE
Q 022074 147 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226 (303)
Q Consensus 147 ~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 226 (303)
+.|..+++|++......... + .+. +.+....+. ..++ +.+...++
T Consensus 265 gtd~r~r~wn~~~G~ntl~~---~------------g~~-------~~n~~~~~~------~~~~-------~~~s~vfv 309 (397)
T KOG4283|consen 265 GTDDRIRVWNMESGRNTLRE---F------------GPI-------IHNQTTSFA------VHIQ-------SMDSDVFV 309 (397)
T ss_pred cCccceEEeecccCcccccc---c------------ccc-------cccccccce------EEEe-------ecccceEE
Confidence 99999999998764322110 0 000 000000000 0000 11222333
Q ss_pred EEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 227 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
--=.++.+.++++-.++.+..++.|-..|.+.++-|+-+...+++.|+++..|-+
T Consensus 310 ~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 310 LFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 3334588999999999999999999999999999999999999999999999987
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.2e-20 Score=148.21 Aligned_cols=203 Identities=21% Similarity=0.342 Sum_probs=160.4
Q ss_pred cccCCCcccceEEEEEcC---CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 32 AADDGGYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~---~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
+..-.||+.||..++||| +|-+|++++.||.--|=.-++|..+-++.+|++.|...+.+ .+..+.++++.|=+.++
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~-~na~~aasaaadftakv 85 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLN-KNATRAASAAADFTAKV 85 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecC-chhhhhhhhcccchhhh
Confidence 334479999999999994 89999999999998887788899999999999999999885 56778889999999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
||.- ++-.+..| .|..-|..++|+.|.++|+|||.++.+|+||+.+.+...
T Consensus 86 w~a~----tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App------------------------ 136 (334)
T KOG0278|consen 86 WDAV----TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP------------------------ 136 (334)
T ss_pred hhhh----hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc------------------------
Confidence 9953 33333344 477889999999999999999999999999997643211
Q ss_pred ccCCCCCcceEEecccc-eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 189 LKHPCDQSVATYKGHSV-LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
..+.||.. +++++ |....+.+++...|++||+||.+++..+..+. ...+|+++..|++|++|
T Consensus 137 ---------~E~~ghtg~Ir~v~-------wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 137 ---------KEISGHTGGIRTVL-------WCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRIL 199 (334)
T ss_pred ---------hhhcCCCCcceeEE-------EeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEE
Confidence 11122221 12222 22234667777999999999999999998886 45689999999999988
Q ss_pred EEEeCCCCEEEeecC
Q 022074 268 VSSSWDGDVVRWEFP 282 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~ 282 (303)
.++. .+.+.+||..
T Consensus 200 Tia~-gssV~Fwdak 213 (334)
T KOG0278|consen 200 TIAY-GSSVKFWDAK 213 (334)
T ss_pred EEec-CceeEEeccc
Confidence 7774 6899999965
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.4e-18 Score=148.29 Aligned_cols=231 Identities=21% Similarity=0.366 Sum_probs=156.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc----
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---- 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~---- 115 (303)
--|.|++|.++|+ +++|..+|+|.||+..+.+...+...|+++|.+++.. .++. |+||++|..|.+||-....
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCML-RDGT-LLSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEe-cCcc-EeecCccceEEeccccccccccc
Confidence 4699999999886 8899999999999998888888888999999999985 4464 5579999999999832100
Q ss_pred ----CC----------------------------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC
Q 022074 116 ----VK----------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 116 ----~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
+. .......++|.+..+.++..|+.++++|++.|+.+++|+ ..+..
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 00 001112357888999999999999999999999999998 22222
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc-ceeeeEEE---eeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-VLRTLIRC---HFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+... +.+.....+.|...............++... ....+-.+ .....|+|+|.+||.|+.|+.|++|-+
T Consensus 402 wt~~~-----~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 402 WTKII-----EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred EEEEe-----cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 22211 1112223333333111111111111111111 00000001 112348899999999999999999998
Q ss_pred CC-CeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 240 VS-GEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 240 ~~-~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.. +.++... +.|..+|+.++||+|+++|.+-+.|-.|-.|.
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 64 4444443 33448999999999999999999999999994
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-18 Score=135.63 Aligned_cols=203 Identities=25% Similarity=0.373 Sum_probs=152.9
Q ss_pred CCcccceEEEEEcCC----CCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEE-EccCCCcEEEEecCCCeEEEE
Q 022074 36 GGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~----g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~-~~~~~~~~l~s~s~dg~v~lW 109 (303)
+=|...|..++|-.+ |..|++++ .|-.|++-|-.+|+-...+.+|++.+.++. |+ +-+|++|+.|.+||.|
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn---~~m~~sgsqdktirfw 209 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN---GAMFASGSQDKTIRFW 209 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec---CcEEEccCCCceEEEE
Confidence 567788999999853 45666655 466788889889988888999999998884 53 5799999999999999
Q ss_pred cCccccCCCccceeecc---cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 110 DRRCLNVKGKPAGVLMG---HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
|+|........-..+.+ ...+|.+++..|.|++|++|-.|.++-+||+|....
T Consensus 210 dlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~------------------------ 265 (350)
T KOG0641|consen 210 DLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM------------------------ 265 (350)
T ss_pred eeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce------------------------
Confidence 99843221111111211 235689999999999999999999999999985332
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEEC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWH 261 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~v~~s 261 (303)
+..+..|.... + +..|||.-.|+++++.|..|++=|+. |.+ ......|++.+-.+.|+
T Consensus 266 ----------iq~f~phsadi---r---~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 266 ----------IQRFHPHSADI---R---CVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred ----------eeeeCCCccce---e---EEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCceEEEEec
Confidence 22222232211 1 22378888999999999999999985 332 33446799999999999
Q ss_pred CCCCeEEEEeCCCCEEEeecC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~ 282 (303)
|+.--+++.+.|.++.+|-.+
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 999999999999999999864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=147.09 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=158.9
Q ss_pred hccccccccccCc-Ccc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceE--EEEe-----cccCCe
Q 022074 16 ESLANVTEIHDGL-DFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLS--LRIL-----AHTSDV 84 (303)
Q Consensus 16 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~--~~~~-----~h~~~v 84 (303)
+--||+|+..||. ..| +.|-.---.+-.++.|+|||++|++| ..++|++||+ +.|+.. .... +..+.+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 3457899999998 222 21111011467899999999999976 6778999999 555432 1122 335678
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~ 163 (303)
.+++|+|.+.+.++.++....+-|+.-. ..++...+-||.++|+.+.+.++|+.|.+|++ |-.|..||+|....
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~----~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~- 285 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDD----GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD- 285 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecC----CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-
Confidence 9999998888899999988887776522 34667778899999999999999999999985 89999999985321
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-C
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-G 242 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~ 242 (303)
++..+.+|.. .+--|+.|. ..|.+++|++|+.||.|++||++. +
T Consensus 286 --------------------------------pv~~L~rhv~-~TNQRI~FD--ld~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 286 --------------------------------PVYALERHVG-DTNQRILFD--LDPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred --------------------------------hhhhhhhhcc-CccceEEEe--cCCCCceeeccCCCccEEEEecCCCC
Confidence 1111111110 011122232 236789999999999999999987 7
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
+.+..+..|..-++.++++|--+++||++..
T Consensus 331 n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 331 NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CcccccccccccccceecCcccceeeeccCc
Confidence 7777788899999999999999999999865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=150.16 Aligned_cols=205 Identities=20% Similarity=0.327 Sum_probs=157.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE----EE------------E--ecccCCeEEEEEccCCC
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS----LR------------I--LAHTSDVNTVCFGDESG 94 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~----~~------------~--~~h~~~v~~l~~~~~~~ 94 (303)
.....|..++.++.++|++++.++++.|++|.=|++.+++.. .+ . ..|...+.+++.++ ++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-DG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-CC
Confidence 445799999999999999999999999999999999887622 00 1 26778899999975 58
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
++|++|+.|..|.|||.+ +..++..+.+|.+.|.+++|....+.+++++.|++|++|++..+..
T Consensus 215 kylatgg~d~~v~Iw~~~----t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~------------ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCD----TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY------------ 278 (479)
T ss_pred cEEEecCCCceEEEecCc----ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH------------
Confidence 999999999999999976 4456677899999999999988888899999999999999864321
Q ss_pred eeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 022074 175 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~ 254 (303)
+.++-||+.....+.. ..-++.+-.|+-|+++++|++.... ...+.+|.+.
T Consensus 279 ----------------------vetlyGHqd~v~~Ida------L~reR~vtVGgrDrT~rlwKi~ees-qlifrg~~~s 329 (479)
T KOG0299|consen 279 ----------------------VETLYGHQDGVLGIDA------LSRERCVTVGGRDRTVRLWKIPEES-QLIFRGGEGS 329 (479)
T ss_pred ----------------------HHHHhCCccceeeech------hcccceEEeccccceeEEEeccccc-eeeeeCCCCC
Confidence 2223333322111110 1124555556799999999995443 3456789999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+++|-. ...++|||+||+|.+|.+..+
T Consensus 330 idcv~~In-~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 330 IDCVAFIN-DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred eeeEEEec-ccceeeccCCceEEEeeeccc
Confidence 99999954 456899999999999998643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=141.92 Aligned_cols=204 Identities=18% Similarity=0.311 Sum_probs=149.2
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce-------EEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
.||+.+|..++|+| +...||+||.|-+|.||.+..+.+ ...+.+|...|..++|+|.-.+.|+|++.|.+|.
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~ 157 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS 157 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence 59999999999998 556799999999999999987643 3567899999999999887788999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+|++. ++...-.+ .|.+-|.+++|+.+|.+|+|...|+.||+||.|........
T Consensus 158 iWnv~----tgeali~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~--------------------- 211 (472)
T KOG0303|consen 158 IWNVG----TGEALITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG--------------------- 211 (472)
T ss_pred EEecc----CCceeeec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec---------------------
Confidence 99975 33333334 39999999999999999999999999999999865422110
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeE---EEEeecCCCCeEEEEEC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWH 261 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~---~~~~~~h~~~I~~v~~s 261 (303)
. ...|....+ . .|-.++.++-||- ++..+.+||..+.+. +.++.. ...|.==-|.
T Consensus 212 -~---------~heG~k~~R----a----ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD 272 (472)
T KOG0303|consen 212 -V---------AHEGAKPAR----A----IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYD 272 (472)
T ss_pred -c---------cccCCCcce----e----EEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeec
Confidence 0 001111111 1 1223455444442 688999999987653 233332 2334444567
Q ss_pred CCCC-eEEEEeCCCCEEEeecCCC
Q 022074 262 PSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
||.. +.+.|-.|++|+.+++...
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCC
Confidence 7776 4678889999999998643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=149.73 Aligned_cols=195 Identities=21% Similarity=0.347 Sum_probs=149.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
..=++|+. .+.+++|... .|++|+..++.......-+...|+++.|++ .+..|+.|..+|+|.|||.. +.+..
T Consensus 180 ~nlldWss-~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~----~~k~~ 252 (484)
T KOG0305|consen 180 LNLLDWSS-ANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVK----EQKKT 252 (484)
T ss_pred hhHhhccc-CCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehh----hcccc
Confidence 45578884 4567776544 599999999985543333478999999964 68999999999999999975 23345
Q ss_pred eeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
+.+.+ |...|.++++. +..+.+|+.|+.|..+|+|....... .+
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---------------------------------~~ 297 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---------------------------------TL 297 (484)
T ss_pred ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh---------------------------------hh
Confidence 55666 88899999987 66899999999999999986432111 12
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC-CCeEEEEeC--CCCEE
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS-QPMLVSSSW--DGDVV 277 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~-~~~las~s~--Dg~i~ 277 (303)
.+|.... | ...+++++.++|+|+.|+.+.|||....+.+..+..|...|..++|+|- ..+||+|+. |+.|+
T Consensus 298 ~~H~qeV----C--gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 298 QGHRQEV----C--GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred hccccee----e--eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 2232111 1 1236789999999999999999999777888888999999999999995 568888764 99999
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
+||....
T Consensus 372 fwn~~~g 378 (484)
T KOG0305|consen 372 FWNTNTG 378 (484)
T ss_pred EEEcCCC
Confidence 9998644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=145.06 Aligned_cols=204 Identities=17% Similarity=0.208 Sum_probs=147.1
Q ss_pred CcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
-|..+|.+++|+|..+ .+++|..-|+|-+||+.+.. -...+..|.+.|+++.|+|.+...+++.|.||++|+-|
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D 263 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD 263 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence 4567999999999655 78889999999999995322 23456789999999999998889999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCC-cccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSN-ASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
++.. ....+-.+..-...+..++++.+...++.+..=|...+||+|..... ....+
T Consensus 264 ~~~~--i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--------------------- 320 (498)
T KOG4328|consen 264 FEGN--ISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--------------------- 320 (498)
T ss_pred ecch--hhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh---------------------
Confidence 7521 11111111112234567778888778888887789999999864321 00000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEECCCC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-----VAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~v~~sp~~ 264 (303)
.++++. ..+++|. ...+|||+|.|++++|||+++... +..+ .|..+|.++.|||++
T Consensus 321 ---h~kKI~------------sv~~NP~---~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 321 ---HKKKIT------------SVALNPV---CPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSG 381 (498)
T ss_pred ---hhcccc------------eeecCCC---CchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCC
Confidence 011111 1122232 346899999999999999975432 3333 699999999999998
Q ss_pred CeEEEEeCCCCEEEeecC
Q 022074 265 PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~ 282 (303)
-.|+|.+.|+.|++||..
T Consensus 382 gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 382 GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CceEeeccCCceEEeecc
Confidence 889999999999999974
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-16 Score=134.49 Aligned_cols=257 Identities=15% Similarity=0.111 Sum_probs=155.1
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+..|..+.+|+.-+|..... . .+|. .+.++.|+|+|+.+ ++++.|+.|++||..+++....+..+. .+..+++++
T Consensus 7 ~~~d~~v~~~d~~t~~~~~~-~-~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~ 82 (300)
T TIGR03866 7 NEKDNTISVIDTATLEVTRT-F-PVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHP 82 (300)
T ss_pred ecCCCEEEEEECCCCceEEE-E-ECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECC
Confidence 44566778887766553221 1 2232 35789999999976 567789999999999887665554443 356778876
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC-cEEEEEcccccCCcccccCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl~~~~~~~~~~~~~ 170 (303)
+...++++++.++.+++||++. ......+. +...+..+.+++++.++++++.++ .+.+||.+............
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~----~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIET----RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCC----CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 5333445566789999999863 22233332 223356788999999999888775 46677876432211110000
Q ss_pred cceeeeceeeeCCCCCccccCC--CCCcceEEecccce-eeeEEE-----------eeeeeeeCCCeEEEE-EeCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHSVL-RTLIRC-----------HFSPVYSTGQKYIYT-GSHDSCVY 235 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~s~~~~~lat-g~~dg~i~ 235 (303)
....+.+.++...+... .+..+..++-.... ...+.. .....+++++++++. .+.++.+.
T Consensus 158 -----~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 158 -----RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred -----CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 01112233333322111 12222222211100 000000 012346788887544 45677899
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE-eCCCCEEEeecCCC
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGN 284 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~-s~Dg~i~~Wd~~~~ 284 (303)
+||..+++.+..+. +...+.+++|+|++++|+++ +.++.|++||+...
T Consensus 233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred EEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 99999888766553 44579999999999998876 56899999998753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=137.48 Aligned_cols=211 Identities=16% Similarity=0.220 Sum_probs=145.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.-|...|..+-...++++|++++.|.+|.||+++ |+....+..-...-...+.+ +++..+++++...-|++|..- +.
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~-f~ 260 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPI-FT 260 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEE-ec
Confidence 4677889999999999999999999999999998 55544333222222344554 579999999999999999852 11
Q ss_pred CCC-----ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 116 VKG-----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 116 ~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
..+ ...-.+.||..+|.+++|+++.+.++|.+.||++|+||+...-.. ..+.+.++
T Consensus 261 kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-------------------~qDpk~Lk 321 (420)
T KOG2096|consen 261 KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-------------------GQDPKILK 321 (420)
T ss_pred cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-------------------CCCchHhh
Confidence 111 122346799999999999999999999999999999997531100 00111111
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEECCCCCeEEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~~~I~~v~~sp~~~~las 269 (303)
... .......+.. . ....+|+++.||.. ....++++..++|+.+-+++ .|...|.+++|+++|++++|
T Consensus 322 ~g~-~pl~aag~~p-----~----RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 322 EGS-APLHAAGSEP-----V----RLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCC-cchhhcCCCc-----e----EEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 000 0000000000 0 12356788876654 45679999999998776664 79999999999999999999
Q ss_pred EeCCCCEEEee
Q 022074 270 SSWDGDVVRWE 280 (303)
Q Consensus 270 ~s~Dg~i~~Wd 280 (303)
++ |+-+++..
T Consensus 391 cG-dr~vrv~~ 400 (420)
T KOG2096|consen 391 CG-DRYVRVIR 400 (420)
T ss_pred ec-ceeeeeec
Confidence 98 56666665
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=135.10 Aligned_cols=243 Identities=17% Similarity=0.208 Sum_probs=152.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.+|...|+++.|..+++ |++|..-|.|.+|++.+......+. .|...|+.+.-.| + ..+.+-+.|+.+.+|++...
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw~ia~s 87 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILWTIAYS 87 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEEEccCc
Confidence 58999999999998775 9999999999999999987766666 4556777776644 2 57789999999999986420
Q ss_pred cC--------------------CCccc-------------------------e----eecccccCeEEEEeCC-CCC--E
Q 022074 115 NV--------------------KGKPA-------------------------G----VLMGHLEGITFIDSRG-DGR--Y 142 (303)
Q Consensus 115 ~~--------------------~~~~~-------------------------~----~~~~h~~~v~~~~~~~-~~~--~ 142 (303)
.. ..++. + ...+..+.+.+.++.. .+. +
T Consensus 88 ~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 88 AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 00 00000 0 0011234455555322 232 3
Q ss_pred EEEEeCCCcEEEEEcccccCCcc------cccCccceeeeceeeeCCCCC-ccccCCCCCcce--EEecc---cceeeeE
Q 022074 143 LISNGKDQAIKLWDIRKMSSNAS------CNLGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVA--TYKGH---SVLRTLI 210 (303)
Q Consensus 143 l~s~~~D~~v~lWdl~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~---~~~~~~~ 210 (303)
++.|..+|.+.+||+........ ......+..-+...+++.+.. ..+.......+. .++.. -.++...
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 56788899999999976421111 101111111111112221110 001000011111 11111 0000000
Q ss_pred E----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 211 R----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 211 ~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
. .......-||++.+||+|-|++||||..+++..+..++.|.+.|++++|||+.+++|+||.|+.|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 0 0011124589999999999999999999999999999999999999999999999999999999999985
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=144.52 Aligned_cols=241 Identities=17% Similarity=0.255 Sum_probs=164.8
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+.||+.-|.+|+..|.|.+|++|+.||+||||++.+|..+.++ ...+.|.+++|+|....-++.++....+.+-+...+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~-~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV-QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE-eecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 3599999999999999999999999999999999999876543 455689999998754444444444444554432111
Q ss_pred c---------------CCCc------------------cceeecccccCeEEEEeCCCCCEEEEEeC---CCcEEEEEcc
Q 022074 115 N---------------VKGK------------------PAGVLMGHLEGITFIDSRGDGRYLISNGK---DQAIKLWDIR 158 (303)
Q Consensus 115 ~---------------~~~~------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---D~~v~lWdl~ 158 (303)
. .... -++....|...|..+.|+..|.||++... .+.|.|.+|.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 0 0000 01233346778889999999999998654 4788999998
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecc--cceeee---EEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH--SVLRTL---IRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
+...... |+.....+....+.|....+...+...+..++-. ....++ .++..+...++.|..|+.|+.|+.
T Consensus 555 K~~sQ~P----F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 555 KRKSQSP----FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKK 630 (733)
T ss_pred cccccCc----hhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCe
Confidence 7543322 2111112233444444444444444443333211 111111 223334456788899999999999
Q ss_pred EEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 234 VYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 234 i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+..+|+.-. +..+++..|...+++|+||+.-++++||+.||++.++-
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 999999865 45778899999999999999999999999999999985
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=132.85 Aligned_cols=199 Identities=18% Similarity=0.251 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
-.|+.|++.|.+||+|+.||.|.|||+.|......+.+|..+|++++|++ +++.|+|+|.|..|++||+..+. +.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs----~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS----PL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC----ce
Confidence 67999999999999999999999999999887777889999999999975 58899999999999999986432 23
Q ss_pred eeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
..+ ....+|+.+.++|.. +.++..-.+..-.+-++..... ..+....+.....
T Consensus 101 ~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h------------------------~~Lp~d~d~dln~- 154 (405)
T KOG1273|consen 101 KRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH------------------------SVLPKDDDGDLNS- 154 (405)
T ss_pred eEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce------------------------eeccCCCcccccc-
Confidence 222 245678888887743 3333333333333333321000 0000000000000
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
... ...|.+.|+++++|...|.+.++|..+.+++..++... ..|..+.|+..|++|+.-+.|++|+.+
T Consensus 155 --------sas---~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 155 --------SAS---HGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred --------ccc---cccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 000 01356779999999999999999999999998887666 789999999999999999999999999
Q ss_pred ecC
Q 022074 280 EFP 282 (303)
Q Consensus 280 d~~ 282 (303)
+..
T Consensus 224 e~~ 226 (405)
T KOG1273|consen 224 EIS 226 (405)
T ss_pred ehh
Confidence 976
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=142.64 Aligned_cols=220 Identities=20% Similarity=0.261 Sum_probs=158.5
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC---------CceEEEEecccCCeEEE
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---------NKLSLRILAHTSDVNTV 87 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~---------~~~~~~~~~h~~~v~~l 87 (303)
.-+.+||.=+|.=.. .-.+|=++|.|+.|+.||+.+++||.||.|.+|++.+ -+....+..|+-.|+.+
T Consensus 103 g~lYlWelssG~LL~--v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl 180 (476)
T KOG0646|consen 103 GNLYLWELSSGILLN--VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDL 180 (476)
T ss_pred CcEEEEEeccccHHH--HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEE
Confidence 345778887776432 1178999999999999999999999999999997642 12345677899999999
Q ss_pred EEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
...+. ...+++|+|.|.++++||+... .....+ ....++.++...|.++.+..|+.+|.|.+.++-...... .
T Consensus 181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~-~ 254 (476)
T KOG0646|consen 181 QIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS-A 254 (476)
T ss_pred EecCCCccceEEEecCCceEEEEEeccc----eeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc-c
Confidence 87543 3568999999999999998632 222222 234678899999999999999999999999876432100 0
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
... +...+.....+..+.||..... + .+..++.||.+|++|++||.++|||+.+.+.++
T Consensus 255 ~v~-----------------~k~~~~~~t~~~~~~Gh~~~~~-I---TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 255 GVN-----------------QKGRHEENTQINVLVGHENESA-I---TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred ccc-----------------ccccccccceeeeeccccCCcc-e---eEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 000 0111122234556666655211 1 123467899999999999999999999999888
Q ss_pred EeecCCCCeEEEEECCCCC
Q 022074 247 ALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~ 265 (303)
++....++|+-+.+.|=.+
T Consensus 314 tl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 314 TLQTSKGPVTNLQINPLER 332 (476)
T ss_pred HHhhhccccceeEeecccc
Confidence 8866778999999976544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=143.86 Aligned_cols=273 Identities=20% Similarity=0.277 Sum_probs=177.5
Q ss_pred EEccCchhhccccccccccCcCcccccC--------CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEE
Q 022074 8 VDVGSGTMESLANVTEIHDGLDFSAADD--------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLR 76 (303)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~ 76 (303)
+++=|+|||..+=||+- .+-++++. +|-.++++++-|+|+++.+++-+.-|..++|..+.... ...
T Consensus 280 ~~LLSASaDksmiiW~p---d~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~ 356 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKP---DENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPV 356 (764)
T ss_pred hhheecccCcceEEEec---CCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccc
Confidence 45668999988878775 33323332 46667899999999999999999999999998433322 223
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
+.+|.++|..+.|.| .+++|+|++.|.+-|++-.-..+.+...+.+.+-|.-...++++-+....|++|+.++.+|+|+
T Consensus 357 iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred cccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeec
Confidence 568999999999964 6889999999999999864322223344555667888889999888778899999999999998
Q ss_pred cccc-----cC-Ccccc--------------cC------ccc----eeeeceeee-----------CCCCCccc-cCCCC
Q 022074 157 IRKM-----SS-NASCN--------------LG------FRS----YEWDYRWMD-----------YPPQARDL-KHPCD 194 (303)
Q Consensus 157 l~~~-----~~-~~~~~--------------~~------~~~----~~~~~~~~~-----------~~~~~~~~-~~~~~ 194 (303)
..+. .. ...+. ++ +.. -.....+.. -||....+ .+..-
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 5420 00 00000 00 000 000000000 01110000 00000
Q ss_pred CcceEEecccceeee-------------------------------------EEEe----eeeeeeCCCeEEEEEeCCCe
Q 022074 195 QSVATYKGHSVLRTL-------------------------------------IRCH----FSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~-------------------------------------~~~~----~~~~~s~~~~~latg~~dg~ 233 (303)
..+..+.||.+..+. +..| ....||||+++|++.+-|++
T Consensus 516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence 001111122111100 0000 12458999999999999999
Q ss_pred EEEEECCCCeE----EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~----~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.+|....... ....+.|+.-|++++|+|+..++||+|.|.++++|..+..
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99998754322 2236799999999999999999999999999999997654
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-17 Score=140.39 Aligned_cols=216 Identities=21% Similarity=0.271 Sum_probs=152.6
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCce-----------------------------------------
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKL----------------------------------------- 73 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~----------------------------------------- 73 (303)
.+|.++|.+|.|+|. -..+++.|.||+||+-|+++...
T Consensus 231 ~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 231 TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred ccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence 699999999999985 44799999999999999876531
Q ss_pred ----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 74 ----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 74 ----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
...+.-|+..|+.++++|.++.+|+|++.|++++|||+|.......|.-....|...|.+..|+|.+..|+|.+.|
T Consensus 311 ~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 311 DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 0012346678999999998999999999999999999985432222333445799999999999998889999999
Q ss_pred CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe
Q 022074 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 150 ~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~ 229 (303)
..|||||....... .+|. ..+.|.+.. -+.+ -.|.+.|.|+..++++|-
T Consensus 391 ~~IRv~dss~~sa~------------------~~p~-~~I~Hn~~t----------~Rwl--T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 391 NEIRVFDSSCISAK------------------DEPL-GTIPHNNRT----------GRWL--TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred CceEEeeccccccc------------------CCcc-ceeeccCcc----------cccc--cchhheeCCCccEEEEec
Confidence 99999997421100 0000 001111110 0000 012234567888999999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCC-CeEE-EEECCCCC-eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTS-PVRD-CSWHPSQP-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~-~I~~-v~~sp~~~-~las~s~Dg~i~~Wd~~ 282 (303)
.-..|-|+|...++.+..+-.... .|.+ .+|+|.+. ++|.++.-|.|.+|.-+
T Consensus 440 ~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 440 YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 999999999988887766533222 3443 46999988 66666677889988744
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-17 Score=145.07 Aligned_cols=229 Identities=20% Similarity=0.245 Sum_probs=146.5
Q ss_pred EEEEEcC---CCCEEEEeeCCCeEEEEECCCCceE------EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 43 FSLKFST---DGRELVAGSSDDCIYVYDLEANKLS------LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 43 ~~l~~s~---~g~~l~sgs~Dg~v~lwd~~~~~~~------~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
++..|++ ....|+.+..||.|.++|....... .....|...|..+.|.| ...+|++++.|.++++||++.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 5577875 3457888999999999998765433 34668999999999976 677899999999999999864
Q ss_pred ccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
....+. ..+.||...|.+++|.+.+ ..|++|++|+.|.|||+|.-....... + ......+....+...+.+
T Consensus 132 s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~--~-~~~~~~~~n~~ptpskp~--- 203 (720)
T KOG0321|consen 132 SRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE--F-DNRIYGRHNTAPTPSKPL--- 203 (720)
T ss_pred ceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH--H-hhhhhccccCCCCCCchh---
Confidence 333222 2478999999999998854 568999999999999998532100000 0 000000000000000000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCCCeEEEE------ee--cC---CCCeEEEEE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSGEQVAA------LK--YH---TSPVRDCSW 260 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~------~~--~h---~~~I~~v~~ 260 (303)
.+.+.....+.... .......+.-|...||++|. |+.|+|||++.....+. .+ .| .-.+.++..
T Consensus 204 -~kr~~k~kA~s~ti---~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l 279 (720)
T KOG0321|consen 204 -KKRIRKWKAASNTI---FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL 279 (720)
T ss_pred -hccccccccccCce---eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence 00011111111100 00111234457788999887 99999999986543222 11 23 234677777
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...|.+|...+.|++|.+|++...
T Consensus 280 DssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 280 DSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred cCCCCeEEEEecCCcEEEEecccc
Confidence 778899888888999999998764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=146.04 Aligned_cols=214 Identities=15% Similarity=0.247 Sum_probs=150.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCC-----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+||.+.|++++.+|+|+.+|+++... .|+||+..+-.....+..|.-.|+.++|+| ++++|++++.|.++.+|.
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeee
Confidence 69999999999999999999987544 489999988766667899999999999975 589999999999999998
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
................|..-|+.++|+|++.+|+|+|+|++|++|........ +...+.. ..+
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~--~i~~~a~-------~~~-------- 663 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDK--YISRFAC-------LKF-------- 663 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhh--hhhhhch-------hcc--------
Confidence 53111111112235678888999999999999999999999999976543100 0000000 000
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECC-------CCeE-----EEEeecCCCCeEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLV-------SGEQ-----VAALKYHTSPVRD 257 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~-------~~~~-----~~~~~~h~~~I~~ 257 (303)
... .....+.+.+.++. ..++.|-+.|.|.+|... .+.. +.....|...|+.
T Consensus 664 ---~~a------------VTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~r 728 (764)
T KOG1063|consen 664 ---SLA------------VTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNR 728 (764)
T ss_pred ---CCc------------eeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhe
Confidence 000 00111223333333 367788899999999954 1111 1122356778999
Q ss_pred EEECCC--------CC--eEEEEeCCCCEEEeecC
Q 022074 258 CSWHPS--------QP--MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 258 v~~sp~--------~~--~las~s~Dg~i~~Wd~~ 282 (303)
+.|+|. .+ .|++|++|..++++++.
T Consensus 729 l~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 729 LLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999986 22 57999999999998864
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-16 Score=132.81 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=64.5
Q ss_pred ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.++-|.+++|+|....+++.+|+|++||+|++..... ...+....|..+|.++.|+.+|..+++|+.|+++++|||..
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc--ccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 4567999999986677788999999999999752111 11244567889999999999999999999999999999976
Q ss_pred c
Q 022074 160 M 160 (303)
Q Consensus 160 ~ 160 (303)
.
T Consensus 104 ~ 104 (347)
T KOG0647|consen 104 G 104 (347)
T ss_pred C
Confidence 4
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=146.21 Aligned_cols=198 Identities=21% Similarity=0.262 Sum_probs=156.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE---ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
..+.+++.++.|++.+.|...|+|-+|++..|-....+ ..|++.|..++. ..-++.++|++.+|-++.||...
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~-D~~n~~~vsa~~~Gilkfw~f~~--- 524 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAV-DGTNRLLVSAGADGILKFWDFKK--- 524 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEe-cCCCceEEEccCcceEEEEecCC---
Confidence 46889999999999999999999999999999777666 479999999998 34467899999999999999752
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
......+. -..++.++..+.....++.+..|-.|+++|....+ .
T Consensus 525 -k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k----------------------------------v 568 (910)
T KOG1539|consen 525 -KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK----------------------------------V 568 (910)
T ss_pred -cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh----------------------------------h
Confidence 11222221 23456666667777789999999999999975321 2
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-CC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-g~ 275 (303)
+..+.||....+- ..|||||++|++++.|++|++||+.++.++-.+. -..+++++.|||+|.+|||+..| .-
T Consensus 569 vR~f~gh~nritd------~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~g 641 (910)
T KOG1539|consen 569 VREFWGHGNRITD------MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNG 641 (910)
T ss_pred hHHhhccccceee------eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCce
Confidence 3334444433322 2488999999999999999999999999876663 45799999999999999999999 88
Q ss_pred EEEeecCCC
Q 022074 276 VVRWEFPGN 284 (303)
Q Consensus 276 i~~Wd~~~~ 284 (303)
|.+|-....
T Consensus 642 IylWsNksl 650 (910)
T KOG1539|consen 642 IYLWSNKSL 650 (910)
T ss_pred EEEEEchhH
Confidence 999976544
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-18 Score=155.14 Aligned_cols=229 Identities=21% Similarity=0.361 Sum_probs=161.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
-||..+|+|+.|...|.++++|+.|..|+||.++++.......+|.+.++.++.+. +..+++++|.|..|++|.+.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~--- 262 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLP--- 262 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecC---
Confidence 39999999999999999999999999999999999988888899999999999854 46688899999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc---ccC----ccceeeeceeeeCCCCCcc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC---NLG----FRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~ 188 (303)
.+.++.++.||+++|++++|+|- .+.+.||++++||-|........ ... +.++.+.-.+..+-....
T Consensus 263 -~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~- 336 (1113)
T KOG0644|consen 263 -DGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR- 336 (1113)
T ss_pred -CCchHHHHhccccceeeeccCcc----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC-
Confidence 56778889999999999999984 48889999999998832211110 000 000000000000000000
Q ss_pred ccCCCCCcceEEeccccee---eeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 189 LKHPCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
+.... .|.... ......|...-+.-..+.+++-.+-.+.+|++-+|.++..+.+|..++..+.++|-.+
T Consensus 337 -----d~ea~---n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 337 -----DGEAR---NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred -----Ccccc---cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCc
Confidence 00000 000000 0000000000011125677788888999999999999999999999999999999665
Q ss_pred -eEEEEeCCCCEEEeecC
Q 022074 266 -MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 266 -~las~s~Dg~i~~Wd~~ 282 (303)
...+++.||...+||+.
T Consensus 409 ri~msag~dgst~iwdi~ 426 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIW 426 (1113)
T ss_pred HhhhhccCCCceEeeecc
Confidence 67799999999999975
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=130.27 Aligned_cols=212 Identities=19% Similarity=0.369 Sum_probs=149.9
Q ss_pred CcccceEEEEEcCCCC----EEEEeeCCCeEEEEECCC--CceEE-------EEecccCCeEEEEEccCCCcEEEEecCC
Q 022074 37 GYSFGIFSLKFSTDGR----ELVAGSSDDCIYVYDLEA--NKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~----~l~sgs~Dg~v~lwd~~~--~~~~~-------~~~~h~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
-|..|+..+.|.|+.+ .+++.+.| .+|||.+.. .+... +-..+..+++..-|+.-+.+++.++|-|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 6889999999999863 24443444 599998874 22211 1123446888889987778999999999
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
-++.+||+... ..+.....+-.|...|..++|...+ ..|++.|.||+||+||||.+... .+.++
T Consensus 173 TTCTiWdie~~-~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--------TIIYE------ 237 (364)
T KOG0290|consen 173 TTCTIWDIETG-VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--------TIIYE------ 237 (364)
T ss_pred CeEEEEEEeec-cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--------eEEec------
Confidence 99999998632 2334455677899999999998754 56899999999999999975421 11110
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCCC-eEEEEeecCCCCeEEEEE
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVSG-EQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~ 260 (303)
+|+. ...++|-.++. .|-.++||-.+ ...|-|-|++.- ..+.++..|++.|+.++|
T Consensus 238 ~p~~-------------------~~pLlRLswnk---qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaW 295 (364)
T KOG0290|consen 238 DPSP-------------------STPLLRLSWNK---QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAW 295 (364)
T ss_pred CCCC-------------------CCcceeeccCc---CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEe
Confidence 0110 00112222221 13456666443 346889999865 458899999999999999
Q ss_pred CCCCC-eEEEEeCCCCEEEeecCCCCc
Q 022074 261 HPSQP-MLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 261 sp~~~-~las~s~Dg~i~~Wd~~~~~~ 286 (303)
.|... .|.|+++|+.+-+||++.+..
T Consensus 296 aPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 296 APHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCCCCceeeecCCcceEEEEecccccc
Confidence 99864 899999999999999987644
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-16 Score=144.30 Aligned_cols=202 Identities=17% Similarity=0.198 Sum_probs=149.8
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
..++.++.+++|+.+|+.++.||.|-.|++.++.+......+.+|+++|.++.|.| +++.|++.+-||.|++||+....
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccch
Confidence 68999999999999999999999999999999999988888999999999999965 58899999999999999986432
Q ss_pred CCCcccee---eccc-ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 116 VKGKPAGV---LMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 116 ~~~~~~~~---~~~h-~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
........ ...- ...+.-++|+|++..|+..+.|+.|++|+...-...+....
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~----------------------- 228 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD----------------------- 228 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-----------------------
Confidence 21111111 1111 33456789999988999999999999998643221111100
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
...... .....|+|.|+|||+++.||.|.|||.++-+. ..-...|.+++|.|+.+-+---.
T Consensus 229 -----------~~~ss~----~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~ 289 (933)
T KOG1274|consen 229 -----------KLSSSK----FSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLIT 289 (933)
T ss_pred -----------cccccc----eEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEe
Confidence 000000 11234788999999999999999999988222 11235799999999998666555
Q ss_pred CCCCEEEee
Q 022074 272 WDGDVVRWE 280 (303)
Q Consensus 272 ~Dg~i~~Wd 280 (303)
..|..-+|.
T Consensus 290 ~~g~~~~~~ 298 (933)
T KOG1274|consen 290 ALGTLGVSP 298 (933)
T ss_pred eccccccCh
Confidence 566766665
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-15 Score=137.14 Aligned_cols=239 Identities=20% Similarity=0.279 Sum_probs=153.8
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEcc-----C-----CCcEEEEecCCCeEEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGD-----E-----SGHLIYSGSDDNLCKV 108 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~-----~-----~~~~l~s~s~dg~v~l 108 (303)
-.++.|++...++.+.-.|..++|||++.-.. ...+..|...|..+.--| + -...|.|++.|++||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 67899999999999999999999999976432 234567887777664322 0 1236889999999999
Q ss_pred EcCccccCCCc---------------------------------cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 109 WDRRCLNVKGK---------------------------------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 109 Wd~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
||+........ ......+...++.+++++|+|.+|++|...|.+|+|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99853110000 000112234578899999999999999999999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCC-CC--CccccCCC-C------------CcceEEecccceeeeEE--------
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYP-PQ--ARDLKHPC-D------------QSVATYKGHSVLRTLIR-------- 211 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~-~------------~~~~~~~~~~~~~~~~~-------- 211 (303)
||..+....... ..+.++..++|+ |. .+.+.... + ..+.++++|...++.++
T Consensus 487 ~Lq~l~~~~~~e----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 487 DLQELEYTCFME----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred Eehhhhhhhhee----cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 987643221111 111111111111 00 00000000 0 00111222211111100
Q ss_pred ----E-------------------------------eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec---CCC
Q 022074 212 ----C-------------------------------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---HTS 253 (303)
Q Consensus 212 ----~-------------------------------~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~---h~~ 253 (303)
| .+.....|.-++++++++|+.|+|||+.+|+..+.|++ |++
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 0 00111245678999999999999999999999999974 667
Q ss_pred CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 254 PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 254 ~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
..-.+...|.|.||||.+.|.+|.++|+-++
T Consensus 643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred ceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 8889999999999999999999999998654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=139.22 Aligned_cols=163 Identities=24% Similarity=0.383 Sum_probs=125.7
Q ss_pred ceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.++.|+|... .|++|..|+.|.|||+.++....++. -+...+.++|+| .+-.|++|++|..++.+|.+.. .+
T Consensus 189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l---~~ 263 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL---SR 263 (433)
T ss_pred ceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhh---cc
Confidence 378888888766 56667799999999999998765443 234678999988 6888999999999999998743 45
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
+...+.+|..+|..++|+|.|..|++||.|++||||..+.......+
T Consensus 264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--------------------------------- 310 (433)
T KOG0268|consen 264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--------------------------------- 310 (433)
T ss_pred cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh---------------------------------
Confidence 77888999999999999999999999999999999987653221100
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~ 247 (303)
..+.+.-.++..||.|.+|+++|+.|+.|++|.....+++..
T Consensus 311 ------htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 311 ------HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred ------hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 000111223445788999999999999999999765554443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=135.16 Aligned_cols=200 Identities=21% Similarity=0.256 Sum_probs=146.1
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
.+++|+.+|..+++|+.||++|+|+.+..........|.+.|.++.|++ +++.|++.+.| ..++|+.... ....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g----~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTG----AALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccC----chhh
Confidence 7899999999999999999999999888777777888999999999975 68899999999 9999997633 1221
Q ss_pred eec--ccccCeEEEEeCCCC-----CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 123 VLM--GHLEGITFIDSRGDG-----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 123 ~~~--~h~~~v~~~~~~~~~-----~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
... +.......+.|+.++ ..++....-+.|+.||+...+...... ..+
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-------------------------~~~ 276 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-------------------------LRK 276 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-------------------------hhh
Confidence 111 122234455566555 233445566778888765321110000 000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+..+ ....+.+.|.+|+++|.|+.||.|.|++..+.+.+..+ +.|..-|+++.|+||.+++++.+.|.
T Consensus 277 ~~~~~----------~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 277 KIKRF----------KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred hhhcc----------CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 01100 01123346789999999999999999999998876655 58999999999999999999999999
Q ss_pred CEEEeecCC
Q 022074 275 DVVRWEFPG 283 (303)
Q Consensus 275 ~i~~Wd~~~ 283 (303)
++.+-.++.
T Consensus 347 ~~~v~~l~v 355 (398)
T KOG0771|consen 347 EAAVTKLAV 355 (398)
T ss_pred ceeEEEEee
Confidence 999999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=154.15 Aligned_cols=235 Identities=20% Similarity=0.336 Sum_probs=164.9
Q ss_pred cceEEEEEcCCCCE----EEEeeCCCeEEEEECCC---Cc---eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 40 FGIFSLKFSTDGRE----LVAGSSDDCIYVYDLEA---NK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 40 ~~v~~l~~s~~g~~----l~sgs~Dg~v~lwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
.+++.++|.+.|.. |+.|..||.|.+||... +. .+.+...|++.|..+.|++..+++|++|+.||.|.+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 47899999998887 88888999999999865 22 2234567999999999999889999999999999999
Q ss_pred cCccccCCCcccee-ecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC-C
Q 022074 110 DRRCLNVKGKPAGV-LMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ-A 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 186 (303)
|+...+ .+... -....+.|.+++|+.. .+.|++++.++.+-|||+|..+.+-........ ..+..+.+.|+ .
T Consensus 145 Dlnn~~---tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~--~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 145 DLNKPE---TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR--MHCSVLAWHPDHA 219 (1049)
T ss_pred ccCCcC---CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--cceeeeeeCCCCc
Confidence 986322 22211 1224567999999875 456789999999999999986544333221110 11111222222 1
Q ss_pred ccc-cCCCC---------------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 187 RDL-KHPCD---------------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 187 ~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
..+ ....+ ..+..+.+|..- ++...|++ .|..+|++++.|+.|.+|+..+++.+..+..
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--ilslsWc~---~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--ILSLSWCP---QDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchhhhcccccc--eeeeccCC---CCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 111 11111 112222344311 12222222 2558999999999999999999999999988
Q ss_pred CCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
...++.++.|.|..+ +++.++-||.|.++.+.+.
T Consensus 295 ~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 295 QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 889999999999987 8999999999999998654
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=124.86 Aligned_cols=236 Identities=19% Similarity=0.225 Sum_probs=151.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 87 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l 87 (303)
+-||+.|--|+|.+.-...+.. +.--|...|.++.|.++-. .|++|+.||.|.+|+...-.+...+.+|.+.|+.+
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg--~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLG--ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred EeccCCCCcEEEEeccchhhhc--ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 4688999999999886666552 3467899999999998765 89999999999999998888888899999999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
+.+| .+++.++.+.|+.+++|++- +++....+ ..+.... +.|++.|.+|+.++. ..|-+|.+..-......
T Consensus 134 siHP-S~KLALsVg~D~~lr~WNLV----~Gr~a~v~~L~~~at~--v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i 205 (362)
T KOG0294|consen 134 SIHP-SGKLALSVGGDQVLRTWNLV----RGRVAFVLNLKNKATL--VSWSPQGDHFVVSGR-NKIDIYQLDNASVFREI 205 (362)
T ss_pred EecC-CCceEEEEcCCceeeeehhh----cCccceeeccCCccee--eEEcCCCCEEEEEec-cEEEEEecccHhHhhhh
Confidence 9964 68899999999999999973 22211111 1232222 667888988888877 46788876542211000
Q ss_pred ccCccceeeece---eeeCCCC--CccccCCC-CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 167 NLGFRSYEWDYR---WMDYPPQ--ARDLKHPC-DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 167 ~~~~~~~~~~~~---~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
....+.+..... .+....+ ...+.... ..+...+.+|....+-+... -.+++.+|+|+|+||.|++||++
T Consensus 206 ~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~----~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 206 ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASY----TNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEE----ecCCceEEEEeccCceEEEEEcc
Confidence 000000000000 0000000 00001111 22344556665544433222 23567899999999999999998
Q ss_pred CC-----eEEEEeecCCCCeEEEEE
Q 022074 241 SG-----EQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 241 ~~-----~~~~~~~~h~~~I~~v~~ 260 (303)
.. +.+..+.. ..+++|+..
T Consensus 282 ~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 282 METKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ccccCCcceeEEeec-CCccceeee
Confidence 65 34555543 445666554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=130.64 Aligned_cols=265 Identities=18% Similarity=0.299 Sum_probs=176.9
Q ss_pred CchhhccccccccccCcCcc-------cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC--------C-----C
Q 022074 12 SGTMESLANVTEIHDGLDFS-------AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--------A-----N 71 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~--------~-----~ 71 (303)
+|.-|+-|-+|.+.++.... -...++|..+|+++.|+|+|+.+++|+.+|.|.+|-.. + .
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 45557777888887766442 23457999999999999999999999999999999665 2 1
Q ss_pred ---ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC
Q 022074 72 ---KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 72 ---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
.....+.+|...+..++|++ ++..+++++.|.++++||+. .+.....+.+|..-|..+++.|.+.++++-+.
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~----~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVH----AGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred cceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEec----cceeEeeccccccccceeecchhhhhhhhhcc
Confidence 12244667999999999975 57899999999999999986 45566677889999999999999999999999
Q ss_pred CCcEEEEEcccccCCcccc-----------cCcccee-ee-------ceeeeCCCCCccccCCCC----------CcceE
Q 022074 149 DQAIKLWDIRKMSSNASCN-----------LGFRSYE-WD-------YRWMDYPPQARDLKHPCD----------QSVAT 199 (303)
Q Consensus 149 D~~v~lWdl~~~~~~~~~~-----------~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~----------~~~~~ 199 (303)
|+..+.+.+.......-+. ...+... +. .+...+.|++..+..+.. +....
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYv 265 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYV 265 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEe
Confidence 9987877654321111000 0000000 00 112233344433332221 11122
Q ss_pred Eeccccee----------eeEEEeeeeee-------------e-CCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCC
Q 022074 200 YKGHSVLR----------TLIRCHFSPVY-------------S-TGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSP 254 (303)
Q Consensus 200 ~~~~~~~~----------~~~~~~~~~~~-------------s-~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~ 254 (303)
++++..-+ ..+...++|++ + |.+-.+|.+. ...+++||.++-+++... ..|=.+
T Consensus 266 fsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~ 344 (434)
T KOG1009|consen 266 FSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA 344 (434)
T ss_pred eccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeee
Confidence 22221111 11112223321 1 2334456665 557999999988876655 467789
Q ss_pred eEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|++++||+||.+|+..|.||-+.+=.+.
T Consensus 345 iTDiaws~dg~~l~vSS~DGyCS~vtfe 372 (434)
T KOG1009|consen 345 ITDIAWSDDGSVLLVSSTDGFCSLVTFE 372 (434)
T ss_pred ecceeecCCCcEEEEeccCCceEEEEEc
Confidence 9999999999999999999988876654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.8e-15 Score=136.20 Aligned_cols=230 Identities=15% Similarity=0.201 Sum_probs=166.5
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEE
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 97 (303)
.|.+|-...+.-.+....++-...|-+++|+ +|.+|.+.+-+|.|.=||+.+.+....+..-.+.+..++.+|. .+.+
T Consensus 48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-~~~l 125 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-NTIL 125 (691)
T ss_pred cEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-cceE
Confidence 3444444444433333335566789999999 5667999999999999999999887777777788999999765 5788
Q ss_pred EEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+.|+.||.+..++... ..-.....+....+.+.+++|++++..+++|+.||.||+||.......- .....
T Consensus 126 ~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-------~~~~~- 195 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-------IITMQ- 195 (691)
T ss_pred EeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-------Eeeec-
Confidence 8899999666666431 1112233455556789999999999999999999999999986532110 00000
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 257 (303)
+..+. +....+.|+..|=.+ ..+++|.+-|+|.+||...+.++..++.|...|.+
T Consensus 196 -------------------~d~l~-----k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~ 250 (691)
T KOG2048|consen 196 -------------------LDRLS-----KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLA 250 (691)
T ss_pred -------------------ccccc-----cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeE
Confidence 00000 000112233333333 46899999999999999999999999999999999
Q ss_pred EEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 258 CSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++-++++..+++++.|+.+.-+...++
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCC
Confidence 999999999999999999998876554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-15 Score=124.92 Aligned_cols=241 Identities=21% Similarity=0.249 Sum_probs=155.6
Q ss_pred cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 32 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 32 ~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+-..+||..||.+++||+||+.|+++|.|..|.+||+..|....++ ..+.+|..+.|+|.+.+.++..-.+..-.+-+.
T Consensus 58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 4455899999999999999999999999999999999999865544 466789999998766555544433332333332
Q ss_pred ccccCCCccceeeccc----cc-CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 112 RCLNVKGKPAGVLMGH----LE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h----~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
... ....+... .+ .-.+..|.+.|+++++|..-|.+.++|....+...+++... .-.++.+.++..+
T Consensus 137 s~~-----~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g 208 (405)
T KOG1273|consen 137 SDP-----KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKG 208 (405)
T ss_pred cCC-----ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---heeeeEEEEeccC
Confidence 210 01111111 01 11122478899999999999999999988776665554321 0111122222222
Q ss_pred ccccC-CCCCcceEEecccceee---------------eEEEee-eeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEe
Q 022074 187 RDLKH-PCDQSVATYKGHSVLRT---------------LIRCHF-SPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 187 ~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~-~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~ 248 (303)
..+.. ..++.+.++........ +-+-.| +-.||.+|.|++.|+ ....++||.-..|.+++.+
T Consensus 209 ~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 209 RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 22211 22334444332211100 000001 112677899888776 4667999999999999999
Q ss_pred ecCC-CCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 249 KYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 249 ~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+.+ ....++.|+|-.+.+++- ..|++++|...
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 8887 578899999999999999 67999999854
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=141.53 Aligned_cols=198 Identities=22% Similarity=0.384 Sum_probs=146.7
Q ss_pred ceEEEEEcCC-----CCEEEEeeCCCeEEEEECCCCceEEEEeccc------CCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 41 GIFSLKFSTD-----GRELVAGSSDDCIYVYDLEANKLSLRILAHT------SDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 41 ~v~~l~~s~~-----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
+|..+++.-. .+.+++.-.+..++.|+......-.-...++ ..+.+++.+ .+|+..+.|...|+|-+|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs-~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVS-FCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEe-ccCceEEEeccCCeEEEE
Confidence 4555555532 2344445566779999997765422222333 577888885 589999999999999999
Q ss_pred cCccccCCCccceee---cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 110 DRRCLNVKGKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 110 d~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+..+ +.....+ ..|.++|+.++...-++.+++++.||.+++||........+..++
T Consensus 476 NmQS----Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~----------------- 534 (910)
T KOG1539|consen 476 NMQS----GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG----------------- 534 (910)
T ss_pred Eccc----CeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----------------
Confidence 9753 3233344 468999999999888899999999999999998653221111100
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
+ . ... +.++.....+|.+..|-.|+++|..+.+.+..|.+|.+.|++++|||||++
T Consensus 535 ------~--~----------~~~------iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 535 ------S--S----------ITG------IVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred ------C--C----------cce------eeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 0 0 001 122333567889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
|++++.|++|++||++..
T Consensus 591 lisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 591 LISASMDSTIRTWDLPTG 608 (910)
T ss_pred EEEeecCCcEEEEeccCc
Confidence 999999999999999875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-14 Score=124.85 Aligned_cols=258 Identities=18% Similarity=0.251 Sum_probs=161.8
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE---Eecc-cCCeEEEEEcc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAH-TSDVNTVCFGD 91 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~---~~~h-~~~v~~l~~~~ 91 (303)
+|+.+||+--.|.... +...-+-.|..+.|+|.+..++.-...|.+..|++.++.+.++ +..+ ...|.|++|.
T Consensus 179 ~h~lSVWdWqk~~~~~--~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~- 255 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLG--PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL- 255 (626)
T ss_pred ccccchhhchhhhccC--cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc-
Confidence 4666788754444332 2223334589999999777666656677899999999876544 2232 2579999996
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc--ccCCccc-cc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK--MSSNASC-NL 168 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~--~~~~~~~-~~ 168 (303)
++++ ++||..+|.+.+|+.+. .+.......|..+|.++....+|. |++|+.|+.|..||-.. .....-. ..
T Consensus 256 engd-viTgDS~G~i~Iw~~~~----~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 256 ENGD-VITGDSGGNILIWSKGT----NRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred CCCC-EEeecCCceEEEEeCCC----ceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhc
Confidence 4454 56999999999999752 222222337999999998888885 66699999999998321 1110000 00
Q ss_pred C-ccc--------eeeecee------------------------eeC-CCCCccccCCCCCcceEEecccceeee--EEE
Q 022074 169 G-FRS--------YEWDYRW------------------------MDY-PPQARDLKHPCDQSVATYKGHSVLRTL--IRC 212 (303)
Q Consensus 169 ~-~~~--------~~~~~~~------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 212 (303)
+ .+. +....++ +.. |.....+....+..+..++.|...=+. ..-
T Consensus 330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDP 409 (626)
T ss_pred CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCc
Confidence 0 000 0000000 000 111111111112223334433321111 011
Q ss_pred eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 213 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 213 ~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.-+..|+|.| .+|.|...|.-.+.|.++.+.+..... ..+++.++|||+|.+||.|+.|+.|.++.+..+
T Consensus 410 ~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 1234577878 889999999999999988776655444 789999999999999999999999999998755
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-16 Score=135.02 Aligned_cols=238 Identities=16% Similarity=0.202 Sum_probs=147.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEE--ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.|.--|.++.+|...+++++|+. |.|+|||+..... +..+ ..-+.-+..+...+ +++.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeeeeec
Confidence 56677889999998999999875 5699999965421 1111 12234566666654 5788889999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.... .+....+....-+..+++.++|.+..+++-.||.|+|||++.......+. .+.-....+....++..+..
T Consensus 495 AapT--prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq----GhtDGascIdis~dGtklWT 568 (705)
T KOG0639|consen 495 AAPT--PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ----GHTDGASCIDISKDGTKLWT 568 (705)
T ss_pred cCCC--cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc----CCCCCceeEEecCCCceeec
Confidence 6432 22222333333456678899999999999999999999998643322211 11000111122222222211
Q ss_pred C-CCCcceEEecccceee----eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 192 P-CDQSVATYKGHSVLRT----LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 192 ~-~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
. -+..+..|+-...... -..-.|+.-++|++.+|+.|=+.+.+.+-.....+ .+.+..|+.-|.++.|++.|++
T Consensus 569 GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 569 GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCce
Confidence 1 1222222221110000 00112334455667777777777777666654333 3455678899999999999999
Q ss_pred EEEEeCCCCEEEeecCC
Q 022074 267 LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~ 283 (303)
++|.+.|..+..|..+-
T Consensus 648 fvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPY 664 (705)
T ss_pred eeecCchhhhhhccCcc
Confidence 99999999999998653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-15 Score=122.53 Aligned_cols=223 Identities=23% Similarity=0.349 Sum_probs=155.3
Q ss_pred ccccccccccCcCcc--------cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-EEEEe-----cccC
Q 022074 17 SLANVTEIHDGLDFS--------AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRIL-----AHTS 82 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~-----~h~~ 82 (303)
+-++||.+=-.+..+ +.-++.+-+.|.|+.|.|+++.+++-. |..|.+|++..+.. ...+. .|..
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence 445777774444332 111235556999999999999999875 77899999988764 22221 2334
Q ss_pred CeEEEEEcc-CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccc
Q 022074 83 DVNTVCFGD-ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 83 ~v~~l~~~~-~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~ 160 (303)
..+.-+|+| -+++.+++.+ |+++..||+|... +.-.....|.-.|..++|+|+- .+|+|+|.|+.||+||+|+.
T Consensus 172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~---~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK---KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred eecccccCCCCccceEEEeC-CCcEEEEEccchh---hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 556678876 4577776655 7899999998432 2233445687889999999874 55899999999999999864
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
+. ++..+.+|......+|++ |. ..+++++||.|..+-+|...
T Consensus 248 k~---------------------------------pv~el~~HsHWvW~VRfn--~~---hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 248 KF---------------------------------PVQELPGHSHWVWAVRFN--PE---HDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred Cc---------------------------------cccccCCCceEEEEEEec--Cc---cceEEEecCCCceeEEEecc
Confidence 32 233444555444444432 21 24789999999999999753
Q ss_pred CC-----------------------------eEEEEeecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecC
Q 022074 241 SG-----------------------------EQVAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFP 282 (303)
Q Consensus 241 ~~-----------------------------~~~~~~~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~ 282 (303)
.- ..+.++..|++.|.+++||.-.++ +||-|.||.+.+=.++
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 20 123466789999999999998885 8899999999886554
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=131.45 Aligned_cols=197 Identities=17% Similarity=0.214 Sum_probs=147.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
+|.+++|+.+.+.||++-.||.|-||++..+-... .+.++ +..|..++|. + +..|+|.+.+|.|.-||+- +.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e-~~RLFS~g~sg~i~EwDl~----~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-E-GGRLFSSGLSGSITEWDLH----TL 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-c-CCeEEeecCCceEEEEecc----cC
Confidence 69999999999999999999999999998875443 34444 4689999996 3 5578899999999999974 44
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
++.........++++++.+|.+..++.|..||.+..++...........
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~------------------------------- 149 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS------------------------------- 149 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-------------------------------
Confidence 5555666667889999999999999999999977777654321110000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec--------CCCCeEEEEECCCCCeEEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY--------HTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--------h~~~I~~v~~sp~~~~las~ 270 (303)
+.... .-.++..|++++..+++|+.||.|++||.++++.+..... -..-||++.|- ....||+|
T Consensus 150 -l~rq~------sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sg 221 (691)
T KOG2048|consen 150 -LMRQK------SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASG 221 (691)
T ss_pred -ccccc------ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEe
Confidence 00000 0012345778888899999999999999999987663221 12347888887 45579999
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
+.-|++++||..
T Consensus 222 DS~G~V~FWd~~ 233 (691)
T KOG2048|consen 222 DSAGTVTFWDSI 233 (691)
T ss_pred cCCceEEEEccc
Confidence 999999999964
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-14 Score=124.86 Aligned_cols=186 Identities=17% Similarity=0.121 Sum_probs=126.7
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccC
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~ 130 (303)
++.+++++.|+.+++||+.+++....+..+. .+..++|+++...++++++.++.|++||.+.. +....+..+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----~~~~~~~~~~~- 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----EVIGTLPSGPD- 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC----cEEEeccCCCC-
Confidence 3568889999999999999988766665553 46778997653334467788999999997532 22333333333
Q ss_pred eEEEEeCCCCCEEEE-EeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeee
Q 022074 131 ITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 209 (303)
Q Consensus 131 v~~~~~~~~~~~l~s-~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (303)
+..+.++++++.+++ ++.|+.+++||++...... .+.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~----------------------------------~~~~~~~---- 116 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA----------------------------------EIPVGVE---- 116 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe----------------------------------EeeCCCC----
Confidence 456788999987754 5568999999986421100 0000000
Q ss_pred EEEeeeeeeeCCCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE-EEeCCCCEEEeecCCC
Q 022074 210 IRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 210 ~~~~~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la-s~s~Dg~i~~Wd~~~~ 284 (303)
.....++|+++++++++.++ .+++||..+++.+..+... ..+..++|+|++++|+ ++..++.+++||....
T Consensus 117 ---~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 117 ---PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred ---cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 01124678899999888765 5778899888776554433 3467899999999775 5556999999998753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-14 Score=125.46 Aligned_cols=225 Identities=29% Similarity=0.486 Sum_probs=162.7
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEE-cCCCC-EEEEeeC-CCeEEEEECCC-CceEEEEecccCCeEEEEEc
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKF-STDGR-ELVAGSS-DDCIYVYDLEA-NKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~g~-~l~sgs~-Dg~v~lwd~~~-~~~~~~~~~h~~~v~~l~~~ 90 (303)
.+..+.+|+...+..........+...+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|..+.|+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS 164 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEEC
Confidence 566777777765541211121223246777777 88887 5555455 99999999988 66777788999999999997
Q ss_pred cCCCcEEEEecC-CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCccccc
Q 022074 91 DESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 91 ~~~~~~l~s~s~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
+. +..+++++. |+.+++|+... ......+.+|...|..+++.+++. .+++++.|+.+++||.+.......
T Consensus 165 ~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~--- 236 (466)
T COG2319 165 PD-GKLLASGSSLDGTIKLWDLRT----GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS--- 236 (466)
T ss_pred CC-CCEEEecCCCCCceEEEEcCC----CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee---
Confidence 64 557778875 99999999752 345666777999999999999887 566669999999997652110000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEE
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAA 247 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~ 247 (303)
.+.+|.... .. .|++++.++++++.|+.+++||...... +..
T Consensus 237 ------------------------------~~~~~~~~~-~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 237 ------------------------------TLSGHSDSV-VS------SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred ------------------------------ecCCCCcce-eE------eECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 111111110 00 3667778888999999999999986654 444
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+..|..++.++.|+|++..+++++.|+.+.+|+....
T Consensus 280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 4678899999999999998888999999999987644
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=125.43 Aligned_cols=202 Identities=16% Similarity=0.189 Sum_probs=149.0
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCc-EEEEecCCCeEEEEcCccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~-~l~s~s~dg~v~lWd~~~~ 114 (303)
-..+|.++.|+|....+++++.||+++||-++... .+..+.--.-++.+.+|.|+ ++ .+++++.....+.||+...
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC-CceEEEecccceEEEEeecccc
Confidence 35689999999999999999999999999886543 22333334468889999764 55 8999999999999998633
Q ss_pred cCCCccceeeccccc-CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
.. .++..+.|+.. .+....+++++++|+..|..|.|.+--........++
T Consensus 291 k~--~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--------------------------- 341 (514)
T KOG2055|consen 291 KV--TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--------------------------- 341 (514)
T ss_pred cc--ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee---------------------------
Confidence 22 23344455553 4667788999999999999999999865432221111
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~ 272 (303)
+-...+. ...|+.+++.|+..+.+|.|++||+.+...+..+.... -.-++++.|+++.+||+||.
T Consensus 342 -------KieG~v~-------~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 342 -------KIEGVVS-------DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD 407 (514)
T ss_pred -------eeccEEe-------eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC
Confidence 1111101 11256788899999999999999999998888775221 23478888999999999999
Q ss_pred CCCEEEeecCC
Q 022074 273 DGDVVRWEFPG 283 (303)
Q Consensus 273 Dg~i~~Wd~~~ 283 (303)
.|.+.++|...
T Consensus 408 ~GiVNIYd~~s 418 (514)
T KOG2055|consen 408 SGIVNIYDGNS 418 (514)
T ss_pred cceEEEeccch
Confidence 99999999553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-14 Score=129.47 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=144.7
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCC
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
...-+.++-++-+.||+. +|.+.. ...+|+..+.+..|||||++|+..+.+ ..|++||+.++.... +....+.
T Consensus 174 v~~~~~~~~~~~i~i~d~-dg~~~~--~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~ 249 (429)
T PRK01742 174 VVQKNGGSQPYEVRVADY-DGFNQF--IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH 249 (429)
T ss_pred EEEEcCCCceEEEEEECC-CCCCce--EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc
Confidence 333333344567777775 565542 235778889999999999999987754 369999998875432 2222233
Q ss_pred eEEEEEccCCCcEEEEe-cCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 022074 84 VNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 161 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~-s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~ 161 (303)
...++|+|+ ++.|+.+ +.+|.+.||.... .......+..+...+....|+|+|+.|+..+ .++..+||++....
T Consensus 250 ~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~---~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 250 NGAPAFSPD-GSRLAFASSKDGVLNIYVMGA---NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred cCceeECCC-CCEEEEEEecCCcEEEEEEEC---CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 456889765 6666554 5788777764321 1122334555666677889999999876554 67899999875311
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
.. ..... +. . ..+.++|++++++..+.++ +.+||+.+
T Consensus 326 ~~---------------------------------~~~l~-~~-------~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 326 GG---------------------------------ASLVG-GR-------G-YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred CC---------------------------------eEEec-CC-------C-CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 00 00000 00 0 1245788999998887765 55699988
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++.......+ ...++.|+||+++|+.++.++...+|++
T Consensus 363 g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 363 GSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 8754322222 3467889999999999999999998875
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-15 Score=129.64 Aligned_cols=199 Identities=18% Similarity=0.310 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
-.|++......++++|+..++|+|||++.......+..|..-|+++.++. .+.++++++..|.|.+-.+.. +...
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t----~~~t 156 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKT----KQKT 156 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEeccc----Cccc
Confidence 34555556668999999999999999996555556778999999999964 478999999999999987642 2222
Q ss_pred eeecccc--cCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 122 GVLMGHL--EGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 122 ~~~~~h~--~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
..| +|. ..|.-+.+++..+ +|.+++.+|.|.+||+..+.+.......
T Consensus 157 t~f-~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~----------------------------- 206 (673)
T KOG4378|consen 157 TTF-TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA----------------------------- 206 (673)
T ss_pred cce-ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh-----------------------------
Confidence 233 343 3466788888654 4678999999999998754432211000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
|. ..+..++|+| .+..+|++.|.|..|.+||.........+. ...|...++|+++|.+|+.|...|.|..
T Consensus 207 ----Hs--AP~~gicfsp---sne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 207 ----HS--APCRGICFSP---SNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ----cc--CCcCcceecC---CccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEE
Confidence 00 0011122333 246789999999999999998766655554 4458999999999999999999999999
Q ss_pred eecCCCC
Q 022074 279 WEFPGNG 285 (303)
Q Consensus 279 Wd~~~~~ 285 (303)
+|+.+..
T Consensus 277 YD~R~~k 283 (673)
T KOG4378|consen 277 YDMRSTK 283 (673)
T ss_pred EecccCC
Confidence 9987653
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-14 Score=131.09 Aligned_cols=247 Identities=19% Similarity=0.246 Sum_probs=149.5
Q ss_pred CcccceEEEEEcCCCC--EEEEe------------------eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcE
Q 022074 37 GYSFGIFSLKFSTDGR--ELVAG------------------SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~--~l~sg------------------s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 96 (303)
-+...+.++.|.+++. ...+. ..++.+.||+++..........-...|.+++|+|.++++
T Consensus 178 ~~~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~l 257 (555)
T KOG1587|consen 178 SPKRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNL 257 (555)
T ss_pred chhcceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcce
Confidence 4556677777777665 11111 023468999998875444455566789999999989999
Q ss_pred EEEecCCCeEEEEcCccccCC--CccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccc-cCcc
Q 022074 97 IYSGSDDNLCKVWDRRCLNVK--GKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCN-LGFR 171 (303)
Q Consensus 97 l~s~s~dg~v~lWd~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~-~~~~ 171 (303)
++.|..+|+|.+||++..... .........|.++++.+.+-.+ +.-|++++.||+|..|+++......... ....
T Consensus 258 l~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 258 LAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 999999999999999744321 1112233468888888776543 3459999999999999988754311100 0000
Q ss_pred -------ceeeeceeeeCCCCCc-cc-cCCCCCcceE-------------EecccceeeeEEEeeeeeeeC-CCeEEEEE
Q 022074 172 -------SYEWDYRWMDYPPQAR-DL-KHPCDQSVAT-------------YKGHSVLRTLIRCHFSPVYST-GQKYIYTG 228 (303)
Q Consensus 172 -------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~s~-~~~~latg 228 (303)
........+++++... .+ .....+.+.. ++++.........+....++| ..+.+.++
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 0000111222222111 11 1111111111 111111110001111111122 12456666
Q ss_pred eCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 229 SHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 229 ~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
+ |.+++||... .-.++..++.+.+.|++++|||..+ +++++..||.|.+||+...
T Consensus 418 g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 418 G-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred c-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 6 9999999988 5567888888888999999999987 7899999999999998643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-14 Score=127.21 Aligned_cols=239 Identities=19% Similarity=0.268 Sum_probs=154.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC----
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---- 116 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~---- 116 (303)
.|+.++|-|||..++.+..| .+.|||...|.+..++.+|++-|.|++|+ .++++|+||+.|+.|.+|.-+....
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceeeec
Confidence 69999999999998887655 59999999999999999999999999996 4699999999999999997431100
Q ss_pred -CC-------ccc------e-------------eecccc--cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 117 -KG-------KPA------G-------------VLMGHL--EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 117 -~~-------~~~------~-------------~~~~h~--~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
.. .|. + ....|. ..+.+++|..||.+|+-|-.||+|.+=+-......-..+
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R 171 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER 171 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC
Confidence 00 000 0 011122 346677888999999999999998886532211100000
Q ss_pred -cCccceeeeceeeeCCCC--CccccCCCC-Cc--ceEEecccceeeeEEEeee---eeeeCCCeEEEEEeCCCeEEEEE
Q 022074 168 -LGFRSYEWDYRWMDYPPQ--ARDLKHPCD-QS--VATYKGHSVLRTLIRCHFS---PVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~---~~~s~~~~~latg~~dg~i~iwd 238 (303)
.+.-+..|.+.+...... ...+..... +. -..++|...- +.-.-.|. ..|-++|.+++.||.|+.+++|-
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig-k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG-KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec-ccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 000111222221111100 000110000 00 0111221110 00001111 23567899999999999999996
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.|-.+.++.....+||.++..|+++.++.|+.||+|-.+++..
T Consensus 251 -R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 251 -RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 56788888877778999999999999999999999999998653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=129.53 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=110.4
Q ss_pred cCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCC-CcEEEEecCC
Q 022074 26 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDES-GHLIYSGSDD 103 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~s~d 103 (303)
++++. ++...||++=|.|+.|+.+|..|++||.|-.+.|||.-..++...+ .+|...|.++.|.|.. +.+++||+.|
T Consensus 38 rrL~l-E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 38 RRLDL-EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhcch-hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 44444 5567999999999999999999999999999999999877766554 4799999999997753 5678899999
Q ss_pred CeEEEEcCccccC------CCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccc
Q 022074 104 NLCKVWDRRCLNV------KGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 104 g~v~lWd~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~ 160 (303)
..|+++|+..... ...+...+..|.+.|.-++..|++ +.+.+++.||++|=+|+|..
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9999999863111 123445667799999999988888 78999999999999999863
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=120.21 Aligned_cols=194 Identities=19% Similarity=0.272 Sum_probs=140.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccc-c
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL-E 129 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~-~ 129 (303)
..+|++-..|+|++||..+++....+.++...++.++|... .++.+.+|+.||+||+||+|.... .+...+.++. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--SARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--hhheeccCCCCC
Confidence 56888889999999999999988889999999999999543 678999999999999999985432 2333445555 4
Q ss_pred CeEEEEeCCCCCEEEEEe----CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccc
Q 022074 130 GITFIDSRGDGRYLISNG----KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 205 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~----~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (303)
+..+++..-.++.+++|. .|-.|.+||.|...... + .-...|.-
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------~--------------------------~~~eSH~D 166 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL------R--------------------------QLNESHND 166 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchh------h--------------------------hhhhhccC
Confidence 567777765667777765 37899999998643210 0 00111222
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE---EEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeec
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ---VAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~---~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~ 281 (303)
..+.+++| | .+..+|++|+.||.+.++|++.... +...--|...|..+.|+.++ +.+.+-+...+..+|++
T Consensus 167 DVT~lrFH--P---~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 167 DVTQLRFH--P---SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred cceeEEec--C---CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 23444433 2 2457899999999999999975532 22223467789999999988 35888888999999998
Q ss_pred CCC
Q 022074 282 PGN 284 (303)
Q Consensus 282 ~~~ 284 (303)
.-.
T Consensus 242 e~~ 244 (376)
T KOG1188|consen 242 EDG 244 (376)
T ss_pred cCC
Confidence 643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=117.90 Aligned_cols=230 Identities=32% Similarity=0.522 Sum_probs=163.6
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
....+.+..+.+|+.-..... -....+|...|.+++|+|+++.+++++. |+.+++|++..+.....+..|...|.++.
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 205 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKL-IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205 (466)
T ss_pred eccCCCCccEEEEEecCCCeE-EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEE
Confidence 344455556677766331111 2233789999999999999998888885 99999999998777777888999999999
Q ss_pred EccCCCc-EEEEecCCCeEEEEcCccccCCCccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 89 FGDESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 89 ~~~~~~~-~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
|++ .+. .+++++.|+++++||.. ...... .+.+|...+ ...+++++.++++++.|+.+++||++....
T Consensus 206 ~~~-~~~~~~~~~~~d~~i~~wd~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 206 FSP-DGGLLIASGSSDGTIRLWDLS----TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred EcC-CcceEEEEecCCCcEEEEECC----CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 984 454 66666999999999864 233343 577787775 447888888899999999999999875321
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
......+|.. .+.. ..++|++..+++++.|+.+.+||..+.....
T Consensus 276 -----------------------------~~~~~~~~~~--~v~~----~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 276 -----------------------------LLRTLSGHSS--SVLS----VAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred -----------------------------EEEEEecCCc--cEEE----EEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 0000011110 0111 1345566777779889999999998887666
Q ss_pred Eee--cCCCCeEEEEECCCCCeEEEE-eCCCCEEEeecCCCC
Q 022074 247 ALK--YHTSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFPGNG 285 (303)
Q Consensus 247 ~~~--~h~~~I~~v~~sp~~~~las~-s~Dg~i~~Wd~~~~~ 285 (303)
... .|...+..+.|++++..++.+ ..|+.+.+|+.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 321 SLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 655 788889999994342455555 688999999987553
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=132.88 Aligned_cols=201 Identities=18% Similarity=0.227 Sum_probs=140.3
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCce-------EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 40 FGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL-------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~-------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
..|..+.|.| |.++|++++.||.|+||.+..+.+ ...+..|...|+.+.|+|--.++|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4688899998 777899999999999999987643 34577899999999998877889999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
+ +......+.||.+.|..++|+++|++++|.+.|+++|+|..|+...... + -.
T Consensus 708 ~----~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~--------E-----g~---------- 760 (1012)
T KOG1445|consen 708 A----NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY--------E-----GK---------- 760 (1012)
T ss_pred h----hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc--------c-----CC----------
Confidence 6 3344567899999999999999999999999999999999876432100 0 00
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC----CCeEEEEECCCCe--EEEEeecCCC-CeEEEEECCCC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGE--QVAALKYHTS-PVRDCSWHPSQ 264 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~----dg~i~iwd~~~~~--~~~~~~~h~~-~I~~v~~sp~~ 264 (303)
..+. .. ..++. |.-+|+++++.|. +..|.+||..+-. .+++..-... .+.-=.+.+|.
T Consensus 761 ---gpvg----tR----gARi~----wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 761 ---GPVG----TR----GARIL----WACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred ---CCcc----Cc----ceeEE----EEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 0000 00 01111 2235677666654 4558888876533 2322211111 11111234454
Q ss_pred C-eEEEEeCCCCEEEeecC
Q 022074 265 P-MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ~-~las~s~Dg~i~~Wd~~ 282 (303)
+ +++||-.|..+.++++-
T Consensus 826 ~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ceEEEecCCCceEEEEEec
Confidence 4 68899999999999863
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=124.13 Aligned_cols=166 Identities=19% Similarity=0.297 Sum_probs=126.8
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC---CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCc
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV---KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQA 151 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~ 151 (303)
.+.+|++.|..+.|+|-+++.++|||+|.+|.+|.+-.... ...+...+.||...|--+.++|. .+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999998899999999999999998742211 12456778899999999999884 577999999999
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
|.+||+..... +.+++ |.... .+..|+.+|.+|+|.+.|
T Consensus 156 v~iWnv~tgea----------------------------------li~l~-hpd~i------~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 156 VSIWNVGTGEA----------------------------------LITLD-HPDMV------YSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred EEEEeccCCce----------------------------------eeecC-CCCeE------EEEEeccCCceeeeeccc
Confidence 99999864321 11111 22111 234577899999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCC-CeEEEEECCCCCeEEEE---eCCCCEEEeecC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPMLVSS---SWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~-~I~~v~~sp~~~~las~---s~Dg~i~~Wd~~ 282 (303)
+.|||||.++++.+.+-.+|++ .-..+-|-.++.++-|| ..++.+-+||..
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~ 249 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPN 249 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcc
Confidence 9999999999999888777874 44566777888844333 347899999964
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=121.01 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=158.6
Q ss_pred CchhhccccccccccCcCcccccCCCcc-cceEEEEEcCCCCEEEEee----CCCeEEEEECCCCce-EEE-EecccCCe
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGS----SDDCIYVYDLEANKL-SLR-ILAHTSDV 84 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~g~~l~sgs----~Dg~v~lwd~~~~~~-~~~-~~~h~~~v 84 (303)
+++.|.-+.+|++-...+-.-+...+|. -+..|++.+.+++.+++|+ .|..|.+||.+..+. ... ...|.+.|
T Consensus 89 s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 89 SCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred EeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 5778888899988554444333445565 5788888888888888886 477899999988664 222 34699999
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
++++|+|.++++|+|||-||.|.++|++..+... +......|..+|..+.|..++ ..|.+-+-+.+..+|++......
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCCCcchh-hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 9999999999999999999999999986332222 222233577789999998776 45888899999999998765432
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEEC---
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDL--- 239 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~--- 239 (303)
...+.. ..... ..+... ...+++.++. ..+...++.++. -+...++-.
T Consensus 248 ~~~~~~--~~~~~----------------d~r~~~------~~dY~I~~~~----~~~~~~~~l~g~~~n~~~~~~~~~~ 299 (376)
T KOG1188|consen 248 TWLENP--DVSAD----------------DLRKED------NCDYVINEHS----PGDKDTCALAGTDSNKGTIFPLVDT 299 (376)
T ss_pred hcccCc--cchhh----------------hHHhhh------hhhheeeccc----CCCcceEEEeccccCceeEEEeeec
Confidence 211110 00000 000000 0001111111 113334444443 444444432
Q ss_pred CCCe---EEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 240 VSGE---QVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 240 ~~~~---~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++. .+..+.+ |..-|.++.|.-.+.++.|||+||.+.+|..+..
T Consensus 300 ~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 300 SSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCCc
Confidence 3333 3445554 6677899999988999999999999999996544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=117.18 Aligned_cols=263 Identities=16% Similarity=0.175 Sum_probs=169.5
Q ss_pred cCchhh-ccccccccccCc--CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC---Ce
Q 022074 11 GSGTME-SLANVTEIHDGL--DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS---DV 84 (303)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~---~v 84 (303)
|--+|- -+|||-+..--. +++.--.-.|+..|+|++|.....++++|+.+++|.+-|+.+.+.+. +..|+. .|
T Consensus 74 GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~-V~~~~~~~~~V 152 (609)
T KOG4227|consen 74 GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY-VANENNNRGDV 152 (609)
T ss_pred cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee-eecccCcccce
Confidence 444444 466776654433 34433335788899999999999999999999999999999987664 445654 78
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCC
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
..+..+|. ++.|++.+.++.|.+||.+.......+. ++.....+...+-|+|.. .+|++++.-+.+.+||.|+....
T Consensus 153 Y~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 153 YHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eecccCCC-CceEEEEecCceEEEEeccCCCCCCcee-eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 88888665 7899999999999999987433222222 223344567777788754 56789999999999999874321
Q ss_pred cccccCccceee-ec--eeeeCCCCCccccCC----C-------CC--cceEEe----cccceeeeEEEeeeeeeeCCCe
Q 022074 164 ASCNLGFRSYEW-DY--RWMDYPPQARDLKHP----C-------DQ--SVATYK----GHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 164 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~----~-------~~--~~~~~~----~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
.-....+.++.- .. ....+.+.+..+... | .+ .+..++ |.....++..|.|. +..
T Consensus 231 ~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~-----~D~ 305 (609)
T KOG4227|consen 231 VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI-----DDY 305 (609)
T ss_pred HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee-----cce
Confidence 111111111111 11 111222322211110 0 00 111111 22223333333332 234
Q ss_pred EEEEEeCCCeEEEEECCCC-----------------------eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 224 YIYTGSHDSCVYVYDLVSG-----------------------EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+++|+.+-.|++|.+... +.+..+++|..-++.|.|+|...+|++.+-...+++|.
T Consensus 306 ~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 306 TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 5999999999999986321 23456789999999999999999999999999999996
Q ss_pred c
Q 022074 281 F 281 (303)
Q Consensus 281 ~ 281 (303)
.
T Consensus 386 ~ 386 (609)
T KOG4227|consen 386 D 386 (609)
T ss_pred c
Confidence 3
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=120.42 Aligned_cols=185 Identities=18% Similarity=0.253 Sum_probs=142.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
-+|..-|.++.++-...+||+++..|.|.|-.+.++.....+... .+.|.-+.|++....+|.+++.+|.|.+||....
T Consensus 118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 588899999999999999999999999999999998765555433 3456688998877778889999999999997532
Q ss_pred cCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
. ........|..+...+.|+|.. .+|++.|.|+.|.+||.+........ .+
T Consensus 198 s---p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l--------------~y----------- 249 (673)
T KOG4378|consen 198 S---PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL--------------TY----------- 249 (673)
T ss_pred C---cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--------------ee-----------
Confidence 1 1122345688888888898865 45789999999999998743211000 00
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+. ....+|+++|.+|+.|...|.|..||++.- .++..+..|...|++++|-|..
T Consensus 250 --------~~P--------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 250 --------SHP--------LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --------cCC--------cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 000 012347889999999999999999999854 4588899999999999998764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=112.99 Aligned_cols=200 Identities=23% Similarity=0.348 Sum_probs=122.3
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEE
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLW 155 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lW 155 (303)
.+|.+-|.++.| ...|+++++|+.|++|++||.+...-+.........|.++|..+.+.+. |+.+++++.|++++||
T Consensus 10 s~h~DlihdVs~-D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSF-DFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeee-cccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 468888999999 4679999999999999999965333333444456679999999888653 7889999999999999
Q ss_pred EcccccCCcccccCccceeeece-----------eeeCCCCCccc---cCCCCCcceEEeccccee---ee----EE---
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYR-----------WMDYPPQARDL---KHPCDQSVATYKGHSVLR---TL----IR--- 211 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~----~~--- 211 (303)
.=....... ....|..+ -..|.|.-..+ ....+..+..+..-.... .. +.
T Consensus 89 EE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 89 EEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI 162 (361)
T ss_pred eeccccccc------ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence 642211111 11112111 11222221111 111222333332111000 00 00
Q ss_pred --------EeeeeeeeC---CCeEEEEEeCC-----CeEEEEECCCC----eEEEEeecCCCCeEEEEECCCC-C---eE
Q 022074 212 --------CHFSPVYST---GQKYIYTGSHD-----SCVYVYDLVSG----EQVAALKYHTSPVRDCSWHPSQ-P---ML 267 (303)
Q Consensus 212 --------~~~~~~~s~---~~~~latg~~d-----g~i~iwd~~~~----~~~~~~~~h~~~I~~v~~sp~~-~---~l 267 (303)
-.++..+++ ...+||.|+.+ +.+.||..... ..+.++..|.+||++++|.|.- + +|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 001111121 23567777766 47888876433 2456778999999999999973 3 89
Q ss_pred EEEeCCCCEEEeecCCCC
Q 022074 268 VSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~~ 285 (303)
|+|+.|| +++|++...+
T Consensus 243 AvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVAR 259 (361)
T ss_pred EEeecCc-EEEEEEeecc
Confidence 9999999 9999998544
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-13 Score=114.33 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=156.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
+|+|.+|++|+..+|++-+...|.||.....++ ..++..|+..|+.+.|++. .+.+++++.|...++|..... -+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~-snrIvtcs~drnayVw~~~~~-~~ 89 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK-SNRIVTCSHDRNAYVWTQPSG-GT 89 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC-CCceeEccCCCCccccccCCC-Ce
Confidence 599999999999999999999999999987763 3567789999999999764 678999999999999986322 23
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
.++.-.+..+..+.+++.++|..+.|++||.-+.|.+|=...... | |. .+.++-+
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd------------W---WV-----sKhikkP----- 144 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND------------W---WV-----SKHIKKP----- 144 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc------------e---eh-----hhhhCCc-----
Confidence 456667778999999999999999999999999999996543210 0 00 0000000
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC-----C-------------CeEEEEeecCCCCeEEEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-----S-------------GEQVAALKYHTSPVRDCS 259 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~-----~-------------~~~~~~~~~h~~~I~~v~ 259 (303)
...++. +..++|++-+|++|+.|+.+|++..- . |+++.++....+.|..+.
T Consensus 145 -------irStv~----sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~ 213 (361)
T KOG1523|consen 145 -------IRSTVT----SLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL 213 (361)
T ss_pred -------ccccee----eeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE
Confidence 001111 23356778899999999999999741 1 123344444567899999
Q ss_pred ECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 260 WHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 260 ~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
|+|+|+.|+-.+.|..+.+=|..++.
T Consensus 214 fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 214 FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999999999999999998876654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=130.61 Aligned_cols=156 Identities=19% Similarity=0.289 Sum_probs=117.9
Q ss_pred EcCCCCEEEE--eeCCCeEEEEECCC-CceEEEE---ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc---CC
Q 022074 47 FSTDGRELVA--GSSDDCIYVYDLEA-NKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN---VK 117 (303)
Q Consensus 47 ~s~~g~~l~s--gs~Dg~v~lwd~~~-~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~---~~ 117 (303)
|+.+.+++++ .+.-|.|-||++.. |++..-. ......|..+.|.|-+.++|+.++.||.|++|.+.... ..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4445666665 45678999999965 3332211 11235789999988888999999999999999875322 22
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
..+.+.+..|.+.|+++.|+|-.
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLA--------------------------------------------------------- 689 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLA--------------------------------------------------------- 689 (1012)
T ss_pred CCcceeeecccceEEEEEecchh---------------------------------------------------------
Confidence 34556666777777776665410
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
...|++++.|-+|++||+.+++....+.+|++.|.+++|||||+.+||.+-||+++
T Consensus 690 ------------------------advLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 690 ------------------------ADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred ------------------------hhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 13477888888899999988888888999999999999999999999999999999
Q ss_pred EeecCC
Q 022074 278 RWEFPG 283 (303)
Q Consensus 278 ~Wd~~~ 283 (303)
+++...
T Consensus 746 Vy~Prs 751 (1012)
T KOG1445|consen 746 VYEPRS 751 (1012)
T ss_pred EeCCCC
Confidence 999764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-13 Score=117.05 Aligned_cols=199 Identities=18% Similarity=0.270 Sum_probs=135.0
Q ss_pred ccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEE--EEeccc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 39 SFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL--RILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 39 ~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++||.++.|.|+|. .+++++...-.+.||+.+++... ...++. ..+.....++ +++.++..+..|.|.|--..
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhak-- 333 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAK-- 333 (514)
T ss_pred cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhh--
Confidence 47899999999999 89999999999999999987543 222333 3455666665 46799999999999986543
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
++..+..+. -.+.|..+.|+.+++.|+.++.+|.|.+||++..... . .|. + +
T Consensus 334 --T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~----~-----rf~----D------------~ 385 (514)
T KOG2055|consen 334 --TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL----H-----RFV----D------------D 385 (514)
T ss_pred --hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE----E-----EEe----e------------c
Confidence 333333332 2356788889999999999999999999999864211 0 000 0 0
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC------eEEE----------------------
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG------EQVA---------------------- 246 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~------~~~~---------------------- 246 (303)
..+ +-.+...|.+++|||+|+..|.|-|||..+- ++++
T Consensus 386 G~v--------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 386 GSV--------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA 451 (514)
T ss_pred Ccc--------------ceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence 000 0001123456777777777777777774321 0000
Q ss_pred -------------------Ee---e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 247 -------------------AL---K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 247 -------------------~~---~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.| . ..-+.|+|++|||.+.+||.|.++|.+.+|.+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 00 0 112468999999999999999999999999863
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-12 Score=113.74 Aligned_cols=211 Identities=10% Similarity=0.165 Sum_probs=126.5
Q ss_pred ceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCc-eE--EEEecccCCeEEEEEccCCCcEE-EEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK-LS--LRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~-~~--~~~~~h~~~v~~l~~~~~~~~~l-~s~s~dg~v~lWd~~~~~ 115 (303)
....+.|+|+|+++++++. ++.|.+|++++.. .. .....+......++++|+ ++.+ ++...++.|.+||+....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~-g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPD-NRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCC-CCEEEEeeCCCCEEEEEEECCCC
Confidence 4567999999999988774 8889999997432 11 111223345667788764 5555 555677999999985311
Q ss_pred CCC-ccceeec-ccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 116 VKG-KPAGVLM-GHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 116 ~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
... ....... ........+.+++++++++++.. +++|.+||+......... ...+. ..+...
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~-------~~~~~--~~p~~~------ 224 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC-------VQTLD--MMPADF------ 224 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE-------EEEEe--cCCCcC------
Confidence 000 0000000 11234567889999999877765 999999998632110000 00000 000000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCe-E---EEEeecCCCCeEEEEECCCCCeE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGE-Q---VAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~-~---~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
.+. ... ....++|++++++++. .++.|.+|++.+.. . +..... ......++|+|+|++|
T Consensus 225 --------~~~---~~~----~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l 288 (330)
T PRK11028 225 --------SDT---RWA----ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYL 288 (330)
T ss_pred --------CCC---ccc----eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEE
Confidence 000 000 0123678899888885 47899999986432 1 222221 1245689999999988
Q ss_pred EEEeC-CCCEEEeecCC
Q 022074 268 VSSSW-DGDVVRWEFPG 283 (303)
Q Consensus 268 as~s~-Dg~i~~Wd~~~ 283 (303)
+++.. ++++.+|++..
T Consensus 289 ~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 289 IAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEEccCCcEEEEEEcC
Confidence 87775 89999999864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-13 Score=111.94 Aligned_cols=217 Identities=21% Similarity=0.321 Sum_probs=146.4
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE------------EEEecc-cCCeEEEEEc------cCCCcEEEEecC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS------------LRILAH-TSDVNTVCFG------DESGHLIYSGSD 102 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~------------~~~~~h-~~~v~~l~~~------~~~~~~l~s~s~ 102 (303)
...+.|+|||..|++-+.|..+++|+++..... ..+.-. ..-|...+|- .++.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 567899999999999999999999988643210 111111 2345555662 245678999999
Q ss_pred CCeEEEEcCccccCCCccceeec--cccc---CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLM--GHLE---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~--~h~~---~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+.-|++||.. +++....+. .|.+ +-.++.|+|||++|.+| ..++||+||+.+.-.. |.
T Consensus 132 ~~PIh~wdaf----tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~--c~---------- 194 (406)
T KOG2919|consen 132 DQPIHLWDAF----TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD--CP---------- 194 (406)
T ss_pred cCceeeeecc----ccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC--Cc----------
Confidence 9999999975 333333332 2444 34578999999998877 5699999998432110 00
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~ 256 (303)
......++.....-++ ....|+| +.+.++.|+.-.++-|+.-..+.++..+.+|.+-|+
T Consensus 195 -----------------vy~t~~~~k~gq~gii---sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 195 -----------------VYTTVTKGKFGQKGII---SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred -----------------chhhhhccccccccee---eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 0000000000001111 1223444 456899999999999999989999999999999999
Q ss_pred EEEECCCCCeEEEEeC-CCCEEEeecCCCCccCCCCcccc
Q 022074 257 DCSWHPSQPMLVSSSW-DGDVVRWEFPGNGEAAPPLNKKR 295 (303)
Q Consensus 257 ~v~~sp~~~~las~s~-Dg~i~~Wd~~~~~~~~~~~~~~~ 295 (303)
.+.|.++|+.|.+|+. |-.|..||+...+...=.+.+++
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv 294 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV 294 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence 9999999998888876 67899999876554444444443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.9e-14 Score=125.09 Aligned_cols=198 Identities=20% Similarity=0.253 Sum_probs=142.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
|--+|..+.|+..|.+|++...++ .|.|..+..+..+..+..-.+-|-++.|+|.. .+|+.++. ..|++||+..
T Consensus 520 ~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq-~~vRiYdL~k- 596 (733)
T KOG0650|consen 520 HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQ-RSVRIYDLSK- 596 (733)
T ss_pred cCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEec-cceEEEehhH-
Confidence 556899999999999999976543 58899998877666666666788999997654 45555554 5899999742
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+.....-|..+++++.|.-|+.++.|+.+..+|+......
T Consensus 597 ---qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP------------------------------- 642 (733)
T KOG0650|consen 597 ---QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP------------------------------- 642 (733)
T ss_pred ---HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch-------------------------------
Confidence 2223333333455788899999999999999999999998642110
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-------C--eEEEEeecCCCC----eEEEEEC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------G--EQVAALKYHTSP----VRDCSWH 261 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-------~--~~~~~~~~h~~~----I~~v~~s 261 (303)
..++.-|.. ...+.+|++.-.++++|+.||++.|+--.- - ..++.+.+|... |.++.||
T Consensus 643 --yk~lr~H~~------avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 643 --YKTLRLHEK------AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred --hHHhhhhhh------hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc
Confidence 001111110 011223555567899999999999995321 1 346778888765 9999999
Q ss_pred CCCCeEEEEeCCCCEEEee
Q 022074 262 PSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd 280 (303)
|..++|+|++.||+|++|.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 9999999999999999994
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.9e-13 Score=125.48 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=144.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc---CCeEEEEE-ccCCCcEEEEecCCCeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCF-GDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~---~~v~~l~~-~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
|-..+-..+.|+|=...++++.....|++||-+.++....+..+. ..|+.+++ +..+..++++|+.||.||+|+-.
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 333457788999988899998877789999999988766555443 47888887 33456789999999999999743
Q ss_pred ccc-CCCcccee---eccc----ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 113 CLN-VKGKPAGV---LMGH----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 113 ~~~-~~~~~~~~---~~~h----~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
... ...+.+.. +.++ .+.-.-++|.+...+|+++|.-+.|||||..+.........
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~---------------- 1205 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY---------------- 1205 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc----------------
Confidence 111 11111111 1121 12223456777667788888889999999876432211100
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---EEEEeecCCCC--eEEEE
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---QVAALKYHTSP--VRDCS 259 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---~~~~~~~h~~~--I~~v~ 259 (303)
.....+..+.+. ...|..++.|..||.+++||.+... .+...+.|+++ |..+.
T Consensus 1206 -------~s~t~vTaLS~~---------------~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1206 -------GSSTLVTALSAD---------------LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred -------CCCccceeeccc---------------ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 011122222211 1246789999999999999987543 46677889887 99999
Q ss_pred ECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 260 WHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 260 ~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
+.++|- -|++|+.||.|++||+..+
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccC
Confidence 999876 4999999999999999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=124.16 Aligned_cols=244 Identities=22% Similarity=0.282 Sum_probs=164.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----------------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL---------------------------------------- 75 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~---------------------------------------- 75 (303)
++|.+-|..+.|+..|..+++||.|..|.+||-..+....
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILE 218 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecc
Confidence 6999999999999999999999999999999987654211
Q ss_pred --------EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc---CeEEEEeCCCCC-EE
Q 022074 76 --------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGDGR-YL 143 (303)
Q Consensus 76 --------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~-~l 143 (303)
.+..|.+.|..++.-|..++-|.|++.|+.|.-.|+++........+.. .+.. ....++..|... ++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~-~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE-ADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec-cCCccceeeeeEecCCCCcccc
Confidence 1234566677777766667788888888888888887543332222221 2222 345677777554 79
Q ss_pred EEEeCCCcEEEEEcccccCCcccc-------cCccc-eeeeceeeeCCCCCcccc------------------------C
Q 022074 144 ISNGKDQAIKLWDIRKMSSNASCN-------LGFRS-YEWDYRWMDYPPQARDLK------------------------H 191 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~------------------------~ 191 (303)
++++.|.-+|+||.|+......+. ..... ..-.+..+.|......+. .
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCc
Confidence 999999999999998743221111 00000 000000111111100000 0
Q ss_pred CCCCc-ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 192 PCDQS-VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 192 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
+..+. ...++||...+++....| |-|...|+++|+.=|.|.||+-.+++.+..+++...=|+|+.=+|--++|||+
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNF---fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNF---FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred chhhccchhhcccccccccceeee---ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 00111 223778877666433332 44667899999999999999999999887787766689999999999999999
Q ss_pred eCCCCEEEeecCC
Q 022074 271 SWDGDVVRWEFPG 283 (303)
Q Consensus 271 s~Dg~i~~Wd~~~ 283 (303)
|-|.-|++|...+
T Consensus 455 Gid~DVKIWTP~~ 467 (559)
T KOG1334|consen 455 GIDHDVKIWTPLT 467 (559)
T ss_pred CCccceeeecCCc
Confidence 9999999999743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=104.11 Aligned_cols=204 Identities=14% Similarity=0.258 Sum_probs=135.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-------EE-EEeccc-----CCeEEEEEccCCCcEEEEecC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-------SL-RILAHT-----SDVNTVCFGDESGHLIYSGSD 102 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-------~~-~~~~h~-----~~v~~l~~~~~~~~~l~s~s~ 102 (303)
.+|+.+|+.+.|.. ..|++|+ ||.|+=|.-+.-.. .. +...|. ..|+++-..|..+..| .++.
T Consensus 59 qahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGG 134 (325)
T ss_pred cccCCCeeeeeeeh--hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecC
Confidence 79999999999993 4666665 59999886543221 11 111222 3577777655545455 5558
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
|+.++-||++ .++....+.||++.+.++.......+++||+.||++|+||++..+.......
T Consensus 135 D~~~y~~dlE----~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~-------------- 196 (325)
T KOG0649|consen 135 DGVIYQVDLE----DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP-------------- 196 (325)
T ss_pred CeEEEEEEec----CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc--------------
Confidence 9999999986 5566778999999999998866677899999999999999987544322100
Q ss_pred CCCCccccCCC-CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 183 PPQARDLKHPC-DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 183 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
...+.+..+. ..-+. ....+..+|++|+ ...+.+|.++..+....+.- ..++..+.|
T Consensus 197 -yk~~~~lRp~~g~wig------------------ala~~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F- 254 (325)
T KOG0649|consen 197 -YKNPNLLRPDWGKWIG------------------ALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDF- 254 (325)
T ss_pred -ccChhhcCcccCceeE------------------EEeccCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeee-
Confidence 0000000000 00000 1123456777765 45699999999888777753 357888998
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....++++++.+-+.-|.+.+.
T Consensus 255 -~~d~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 255 -VDDCVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred -ecceEEEeccccceeeeeeccE
Confidence 4456788887778888876543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=120.19 Aligned_cols=100 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred Cchhhcccccccc---c--cCcCcccccC-CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----------eEE
Q 022074 12 SGTMESLANVTEI---H--DGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----------LSL 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~---~--~~~~~~~~~~-~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----------~~~ 75 (303)
+++.++.+.+|.. . .+++.+++.. .||++||.|+.+.++++.+++|+-||+|+.|++.... +..
T Consensus 311 t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~ 390 (577)
T KOG0642|consen 311 TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG 390 (577)
T ss_pred EeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence 6888999888876 2 2223322222 6999999999999999999999999999999665322 234
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+.+|++.|..++++. ..+.|++++.||+||+|+..
T Consensus 391 ~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 391 TLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred ceeccccceeeeeecc-cccceeeecCCceEEeeccC
Confidence 5789999999999964 46789999999999999854
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=109.92 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=103.7
Q ss_pred CcccceEEEEEcC-----CCCEEEEeeCCCeEEEEECCCCceEEEEe-----cccCCeEEEEEccC---CCcEEEEecCC
Q 022074 37 GYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRIL-----AHTSDVNTVCFGDE---SGHLIYSGSDD 103 (303)
Q Consensus 37 ~~~~~v~~l~~s~-----~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-----~h~~~v~~l~~~~~---~~~~l~s~s~d 103 (303)
.|+.+|+.++|++ +-..+++.+.+ .+.||+.........++ .|...-..++|.-+ ...+++.|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 7888999999994 23345555544 58899887654222221 13344445555221 12355555666
Q ss_pred CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
|-||+.|.. ..+....+.+|..+|+.+.+.|+.
T Consensus 115 GvIrVid~~----~~~~~~~~~ghG~sINeik~~p~~------------------------------------------- 147 (385)
T KOG1034|consen 115 GVIRVIDVV----SGQCSKNYRGHGGSINEIKFHPDR------------------------------------------- 147 (385)
T ss_pred eEEEEEecc----hhhhccceeccCccchhhhcCCCC-------------------------------------------
Confidence 666666643 222334455555555555444422
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe---ecCCCCeEEEEE
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL---KYHTSPVRDCSW 260 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~---~~h~~~I~~v~~ 260 (303)
.+++++|+.|..||+|+++++.++..+ ++|.+.|.+++|
T Consensus 148 --------------------------------------~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 148 --------------------------------------PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred --------------------------------------CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 245666666677777777666666554 589999999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
|++|.+++|+|.|.+|++|+++.
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cCCCCeeeccCCcceEEEEecCh
Confidence 99999999999999999999873
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=105.26 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCC---------c-eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEAN---------K-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~---------~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
|++-+++|.++++++|+.+|+|.++.++.- + ......+|++++..++|. +..|++|+ ||.|+-|..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEeee
Confidence 666789999999999999999999988642 1 223457899999999996 34666776 599998876
Q ss_pred ccccCCCcccee----eccc-----ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 112 RCLNVKGKPAGV----LMGH-----LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 112 ~~~~~~~~~~~~----~~~h-----~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
+........... ...| ...|+++...|..+.++.++.|+.+.-||+...+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------------------- 147 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------------------- 147 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE---------------------
Confidence 432211110000 0112 2347788888887888888899999999986422
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----------C
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----------T 252 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----------~ 252 (303)
...++.||......+... + ....+++|++||++|+||.++++.+..++.. .
T Consensus 148 -------------i~r~~rGHtDYvH~vv~R-----~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 148 -------------IQREYRGHTDYVHSVVGR-----N-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred -------------EEEEEcCCcceeeeeeec-----c-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 233455554322211110 1 1345899999999999999999988776532 1
Q ss_pred CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.+++- +..+|++|+ .-.+.+|.++.+
T Consensus 209 ~wigala~--~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 209 KWIGALAV--NEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred ceeEEEec--cCceEEecC-CCceeEEeccCC
Confidence 34555554 556888886 468999999865
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-12 Score=103.86 Aligned_cols=67 Identities=16% Similarity=0.408 Sum_probs=48.5
Q ss_pred eCCCeEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCCCcc
Q 022074 219 STGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGNGEA 287 (303)
Q Consensus 219 s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~~~ 287 (303)
||+|++|++|+ ..|.|.+||..+.+.+...+ |. .++.++|||||++|+++.. |+.+++|++.+....
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 33444444443 23668889988888776664 33 4789999999999998875 799999999876433
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-11 Score=109.26 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=137.1
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCC-CceEE-EEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLSL-RILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~-~~~~~-~~~~h~~~v~~l~~~~~ 92 (303)
+..|.+|++.++.+......-.+......++++|++++|++++ .++.|.+|+++. +.+.. ......+....+++++
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~- 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDH- 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECC-
Confidence 4567777775433321111111223466789999999987765 478899999973 43321 1112334567888975
Q ss_pred CCcEEEEec-CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCc
Q 022074 93 SGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 93 ~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+++.+++++ .++.|.+||+............+. +......+.++|++++++ +...++.|.+||+....... .....
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~-~~~~~ 167 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV-AQEPA 167 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc-ccCCC
Confidence 466666655 488999999752111111222222 223456677899998885 45567999999986421100 00000
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEEEECCC--Ce--EE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYVYDLVS--GE--QV 245 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~iwd~~~--~~--~~ 245 (303)
.+....+.. .....|+|++++++++.+ ++.|.+||+.. ++ .+
T Consensus 168 -------------------------~~~~~~g~~--------p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 168 -------------------------EVTTVEGAG--------PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred -------------------------ceecCCCCC--------CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 000000000 012347789999988876 99999999973 32 23
Q ss_pred EEeecC------CCCeEEEEECCCCCeEEEEeC-CCCEEEeecCCC
Q 022074 246 AALKYH------TSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 246 ~~~~~h------~~~I~~v~~sp~~~~las~s~-Dg~i~~Wd~~~~ 284 (303)
..+..+ ......+.|+|++++|+++.. ++.|.+|++...
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 333221 122346899999998888754 789999998543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=117.63 Aligned_cols=173 Identities=20% Similarity=0.229 Sum_probs=121.8
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEE----ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-------
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRI----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK------- 117 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~------- 117 (303)
+.+-.++.|=.-|.|.+.|.........+ .--+..|+|+.|-+.+...|+.+-.+|.+.++|.......
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45667888888888888877653221111 0122579999998877888999999999999975311000
Q ss_pred -----------------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 118 -----------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 118 -----------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
..|...+.--..+++.++|++||.+||+.+.||.+||||...+......
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-------------- 328 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-------------- 328 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH--------------
Confidence 0111112112346778889999999999999999999997654321111
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
..+ .....+..+||||+|+++||+|.-|.||....++.+..=.+|+.+|..|+|
T Consensus 329 -----------------kSY---------FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 329 -----------------KSY---------FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAF 382 (636)
T ss_pred -----------------Hhh---------ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEee
Confidence 000 001112336789999999999999999999999999998999999999999
Q ss_pred C
Q 022074 261 H 261 (303)
Q Consensus 261 s 261 (303)
.
T Consensus 383 D 383 (636)
T KOG2394|consen 383 D 383 (636)
T ss_pred c
Confidence 8
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=128.48 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=170.8
Q ss_pred EEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE
Q 022074 6 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 85 (303)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~ 85 (303)
|-++-||.+| |..||--.++.... +-.||+..|..++.+.+.-.++++|.|..|++|.+.++..+..+.+|++.|+
T Consensus 203 ~~Iitgsdd~--lvKiwS~et~~~lA--s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavt 278 (1113)
T KOG0644|consen 203 RYIITGSDDR--LVKIWSMETARCLA--SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVT 278 (1113)
T ss_pred ceEeecCccc--eeeeeeccchhhhc--cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccccee
Confidence 4466677665 77888877777663 6699999999999999999999999999999999999998888999999999
Q ss_pred EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 86 TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+++|+|- .+.+.||++++||.+- .....+...+.- -.+-+..+-+-..+..++|++.|+.-+.|.+.......
T Consensus 279 aiafsP~-----~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~ 352 (1113)
T KOG0644|consen 279 AIAFSPR-----ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRS 352 (1113)
T ss_pred eeccCcc-----ccCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhc
Confidence 9999763 2778899999999871 111111111111 12345566677778889999999999999765421110
Q ss_pred ccccCccceeeeceeeeCCCCCccccCC------CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHP------CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
.. +.+.....+.. .+-+....-... .....-...+|.....+++.|. -+.+...+++.||...|||
T Consensus 353 ~~-lif~t~ssd~~--~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp-----fn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 353 NL-LIFVTRSSDLS--SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP-----FNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred cc-eEEEecccccc--ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC-----CCcHhhhhccCCCceEeee
Confidence 00 00000000000 000000000000 0011112233333333333331 1345667899999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 239 LVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+-.|-+++.+......+-+.+||+||..++....-|.+.+...-
T Consensus 425 i~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 425 IWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 99887766554335678899999999999999999999988754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-13 Score=110.81 Aligned_cols=125 Identities=20% Similarity=0.341 Sum_probs=104.5
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.-|..++.+..|+. +-+++.++|-|-|..|||++++. ...++.+|+..|..++|.....++|+|.+.||+||+||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 36668999999994 67789999999999999999863 356788999999999998766789999999999999998
Q ss_pred ccccC--------------------------------------------CCccceeecccccCeEEEEeCCC-CCEEEEE
Q 022074 112 RCLNV--------------------------------------------KGKPAGVLMGHLEGITFIDSRGD-GRYLISN 146 (303)
Q Consensus 112 ~~~~~--------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 146 (303)
|..+. ...+...+.+|.+.|+.++|.|. ...|+|+
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 74211 12244567789999999999885 5679999
Q ss_pred eCCCcEEEEEcccc
Q 022074 147 GKDQAIKLWDIRKM 160 (303)
Q Consensus 147 ~~D~~v~lWdl~~~ 160 (303)
|.|.++.+||+..+
T Consensus 307 GDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 307 GDDCQALIWDLQQM 320 (364)
T ss_pred CCcceEEEEecccc
Confidence 99999999999754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=128.10 Aligned_cols=236 Identities=19% Similarity=0.305 Sum_probs=142.5
Q ss_pred EEEEEcCCCC-EEEEee----------CCCeEEEEECCCCceE---EE--EecccCCeEEEEEccCCCc---EEEEecCC
Q 022074 43 FSLKFSTDGR-ELVAGS----------SDDCIYVYDLEANKLS---LR--ILAHTSDVNTVCFGDESGH---LIYSGSDD 103 (303)
Q Consensus 43 ~~l~~s~~g~-~l~sgs----------~Dg~v~lwd~~~~~~~---~~--~~~h~~~v~~l~~~~~~~~---~l~s~s~d 103 (303)
-.++|+|.+. ++++|. .+.++-||.+...... .. ....+..-+.++|.+.... +++.|.+|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 4578898886 455443 3455667765433211 11 1122346688999654333 58888999
Q ss_pred CeEEEEcCccc--cCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccc-----cCccceee
Q 022074 104 NLCKVWDRRCL--NVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCN-----LGFRSYEW 175 (303)
Q Consensus 104 g~v~lWd~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~-----~~~~~~~~ 175 (303)
|.|.+||.... +.....+.....|.+.|..++|++.+. +|++|+.||.|.|||+.+.....+.. .....+.|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999997532 222234556677999999999999755 99999999999999998754332221 11122233
Q ss_pred eceeee----CCCCCccc-c-CCCCCcceEEecccceeeeEEEee-eeeeeCC-CeEEEEEeCCC---eEEEEECCCC-e
Q 022074 176 DYRWMD----YPPQARDL-K-HPCDQSVATYKGHSVLRTLIRCHF-SPVYSTG-QKYIYTGSHDS---CVYVYDLVSG-E 243 (303)
Q Consensus 176 ~~~~~~----~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-~~~latg~~dg---~i~iwd~~~~-~ 243 (303)
...... ..+.++.. . ......+..+..+.. ++++ ...++|+ -..++++++|. .|.+||++.- .
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~-----~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG-----RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCC-----ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 311100 00010000 0 000011111111111 1111 1224443 34566666544 5999998754 4
Q ss_pred EEEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeecCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~ 283 (303)
.++++.+|+..|.++.|.+.+ .+|+|++.|+.+..|+...
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 577889999999999999987 7999999999999999765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-12 Score=123.36 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=142.0
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
.-++|.-+..+|+++|.-..|||||++......-+.. .+..|+++.-....+++++.|-.||.||+||.|.... ...+
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v 1247 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLV 1247 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccc
Confidence 5577886666777777788999999988776554432 3446677765445578999999999999999885443 2456
Q ss_pred eeecccccC--eEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 122 GVLMGHLEG--ITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 122 ~~~~~h~~~--v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.....|.+. |..+.+.+.|- .|++|+.||.|++||+|.......... ...|++
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~y--------------------- 1303 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEY--------------------- 1303 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eecccc---------------------
Confidence 667778876 88888887653 499999999999999997311110000 000000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-------CCCeEEEEECCCCCeEEEEe
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------TSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-------~~~I~~v~~sp~~~~las~s 271 (303)
|.. -+.+. .+.....+|+|+. +.|+||++. |+.+..++.+ .+.+.+++|||-..+||.|+
T Consensus 1304 ---Gs~--lTal~------VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1304 ---GSA--LTALT------VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ---Ccc--ceeee------eccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 000 01121 2234567899988 999999985 5655555433 35789999999999999999
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.|..+.++....
T Consensus 1371 ~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1371 ADSTVSIYSCEK 1382 (1387)
T ss_pred CCceEEEeecCC
Confidence 999999998643
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=105.37 Aligned_cols=188 Identities=22% Similarity=0.261 Sum_probs=128.7
Q ss_pred CCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+|+....+-.|+| ||+.+++. .|++++-||+++......+ .+|...|..+-|+|+.-.+|+||+.||.||+||.|
T Consensus 167 ~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 167 AEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred ccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 56888999999998 78877775 6889999999987655444 36888999999998777889999999999999987
Q ss_pred cccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC--Cccc
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--ARDL 189 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (303)
. +..++..+.+|..-|+++.|+|. +.+++|+|.|..|.+|.............+. ..-..+.. ....
T Consensus 246 ~---tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~-------dese~e~~dseer~ 315 (370)
T KOG1007|consen 246 K---TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED-------DESESEDEDSEERV 315 (370)
T ss_pred C---CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc-------ccccCcchhhHHhc
Confidence 3 45677888899999999999884 5678999999999999865432221111110 00000000 0111
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
+...++.+.+++.|....+. +.++ +.+.-.+|+-+.||++-|=.+
T Consensus 316 kpL~dg~l~tydehEDSVY~--~aWS---sadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYA--LAWS---SADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccccccccceEE--Eeec---cCCCeeEEEeccCceEEeecC
Confidence 11223345555555432222 2222 235567888899999877544
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=106.39 Aligned_cols=237 Identities=17% Similarity=0.199 Sum_probs=146.9
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC------ceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN------KLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~------~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
|..||.+-|.+|.|+.++++|++|+.|..++||.++.. +.+. .-..|...|.|++|... ...+++|..+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCCCccee
Confidence 55699999999999999999999999999999988542 2221 12235579999999654 5678899999999
Q ss_pred EEEcCccccCCCccceeeccccc---CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc------cccCccceeeec
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLE---GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS------CNLGFRSYEWDY 177 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~------~~~~~~~~~~~~ 177 (303)
.+-|+.. .+.+-++ .|.+ .|..++.+|-++.|++.+.++.|.+||.|....... ....|.+..
T Consensus 130 I~HDiEt----~qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~--- 201 (609)
T KOG4227|consen 130 IKHDIET----KQSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE--- 201 (609)
T ss_pred Eeeeccc----ceeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee---
Confidence 9999752 2223222 3444 799999999999999999999999999986442111 111222222
Q ss_pred eeeeCCCCCcccc-CCC-CCcceEE------------ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 178 RWMDYPPQARDLK-HPC-DQSVATY------------KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 178 ~~~~~~~~~~~~~-~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
+.|....+. ... ......+ .+...+.....--....|++.|..|.+----..-.+||+.+..
T Consensus 202 ----F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 202 ----FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred ----ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 222222111 100 0001111 1110000000000112356667666665445556677876632
Q ss_pred -EEEEeecCC-------CCeEEEEECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 244 -QVAALKYHT-------SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 244 -~~~~~~~h~-------~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
.+..+. |. ..|.+|+|--|- .++||+.+=.|++|.++...
T Consensus 278 ~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 278 CFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred ceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence 343333 22 357788886554 49999999999999987543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=111.22 Aligned_cols=177 Identities=21% Similarity=0.313 Sum_probs=125.2
Q ss_pred CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC-----ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 82 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
.+|..+.|.....+.++||+.|..|++|-+......+ .....+..|..+|+.+.|+++|++|+||+.++.+.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 4788888865555599999999999999764222111 22345778999999999999999999999999999997
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEE
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 236 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~i 236 (303)
...-. ...+.. +.+ +..........+.+|... .....+++++.++++|+.|..+++
T Consensus 94 ~~~~~-~~~~d~-----e~~------------~~ke~w~v~k~lr~h~~d------iydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 94 QGDVR-IFDADT-----EAD------------LNKEKWVVKKVLRGHRDD------IYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred ecCcC-Cccccc-----hhh------------hCccceEEEEEecccccc------hhhhhccCCCceeeeeeccceEEE
Confidence 54200 000000 000 000000001111122111 112346789999999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 237 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 237 wd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
||+..|+.+..+..|...+..++|.|-.+++++-+.|...+...+.
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999999999999999877766643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-10 Score=105.24 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=133.0
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
...+-+.|++. +|.+.... ..+...+.+..|||||+.|+..+. +..+++|++.+++.. .+....+.+....|+
T Consensus 176 ~~~~~l~~~d~-dg~~~~~l--t~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~S 251 (429)
T PRK03629 176 QFPYELRVSDY-DGYNQFVV--HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS 251 (429)
T ss_pred CcceeEEEEcC-CCCCCEEe--ecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEEC
Confidence 33445555554 34433222 234567899999999999886542 457999999887643 333344455678998
Q ss_pred cCCCcEEE-EecCCC--eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCccc
Q 022074 91 DESGHLIY-SGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 91 ~~~~~~l~-s~s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~ 166 (303)
|+ ++.|+ +.+.+| .|++||+... . ...+..+...+....|+|+|+.|+..+. ++...+|.+......
T Consensus 252 PD-G~~La~~~~~~g~~~I~~~d~~tg----~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~--- 322 (429)
T PRK03629 252 PD-GSKLAFALSKTGSLNLYVMDLASG----Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA--- 322 (429)
T ss_pred CC-CCEEEEEEcCCCCcEEEEEECCCC----C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---
Confidence 75 55544 545555 5888887522 2 2233334445677889999998876664 456667654321000
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCe
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGE 243 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~ 243 (303)
.. .+ +..+. ....+.++|+|++++..+.+ ..|++||+.+++
T Consensus 323 ---~~------------------------~l-t~~~~--------~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 323 ---PQ------------------------RI-TWEGS--------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred ---eE------------------------Ee-ecCCC--------CccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 00 00 00000 01135578899988876543 468999998876
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCC---EEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD---VVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~---i~~Wd~~~~ 284 (303)
.. .+... .......|||||++|+.++.++. +.++++.+.
T Consensus 367 ~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 367 VQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred eE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 43 33221 23456789999999999988875 667776543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=107.77 Aligned_cols=216 Identities=14% Similarity=0.090 Sum_probs=132.9
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
.+-+.|++. +|.+.. -...|...+.+.+|+|||+.|+..+. +..|++||+.++... .+..+.+.+....|+|+
T Consensus 181 ~~~l~~~d~-dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 181 IKRLAIMDQ-DGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred ceEEEEECC-CCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 344555554 455442 12467778999999999999888764 468999999888643 45556667778899875
Q ss_pred CCcEEEEecCCCe--EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCC--cEEEEEcccccCCcccc
Q 022074 93 SGHLIYSGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQ--AIKLWDIRKMSSNASCN 167 (303)
Q Consensus 93 ~~~~l~s~s~dg~--v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~--~v~lWdl~~~~~~~~~~ 167 (303)
...++++.+.++. |.+||+... ....+..+........|+|+|+.|+..+ .++ .|.++|+.....
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~-----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~----- 326 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSG-----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP----- 326 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCC-----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-----
Confidence 4444557676665 666676421 2333444554556678999999887666 344 455555432100
Q ss_pred cCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeE
Q 022074 168 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQ 244 (303)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~ 244 (303)
..+.... .....+.++|++++|+....+ ..|.+||...+..
T Consensus 327 ------------------------------~~lt~~~------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 327 ------------------------------RRISFGG------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred ------------------------------EEeecCC------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 0000000 001235578899988876543 4688999865543
Q ss_pred EEEeecCCCCeEEEEECCCCCeEEEEeCC------CCEEEeecCC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWD------GDVVRWEFPG 283 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~las~s~D------g~i~~Wd~~~ 283 (303)
..+. ....+.+..|+|||++|+..+.+ ..|.+.++.+
T Consensus 371 -~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 371 -RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred -Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 2332 22357788999999987765543 2466666654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-11 Score=108.46 Aligned_cols=194 Identities=20% Similarity=0.199 Sum_probs=124.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.. .+....+......|+|+...++++.+.++...+|...
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 3566789999999999998887643 35999999988653 3444445567889987544445577888887887653
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
. .......+..+........|+|||+.|+..+ .++...+|.+...... .
T Consensus 271 ~---~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~--~------------------------- 320 (427)
T PRK02889 271 A---DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA--A------------------------- 320 (427)
T ss_pred C---CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc--e-------------------------
Confidence 2 1122334444444455677999999887554 4577788876421100 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
...++.+. ....+.+||+|++++..+.++ .|++||+.+++.. .+... .......|+||+++|+
T Consensus 321 ----~~lt~~g~--------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~ 386 (427)
T PRK02889 321 ----QRVTFTGS--------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYIL 386 (427)
T ss_pred ----EEEecCCC--------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEE
Confidence 00000110 012356889999988776554 6999999887643 33222 2346789999999877
Q ss_pred EEeCCC
Q 022074 269 SSSWDG 274 (303)
Q Consensus 269 s~s~Dg 274 (303)
.++.++
T Consensus 387 ~~~~~~ 392 (427)
T PRK02889 387 YATQQG 392 (427)
T ss_pred EEEecC
Confidence 766544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-13 Score=115.63 Aligned_cols=197 Identities=18% Similarity=0.282 Sum_probs=145.6
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
+++-+.+.++.+|+.++.|+..|.+-.+|..++++...+. -...|..+.|.+ +.++| .......+++||-. +
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~-AVAQK~y~yvYD~~-----G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFF-AVAQKKYVYVYDNN-----G 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHH-HhhhhceEEEecCC-----C
Confidence 4567899999999999999999999999999998776553 335688888864 34444 55566799999943 3
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....++..| ..|..+.|-|--=+|++++.-|-++--|+......++...+... +
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~------------------------~- 254 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR------------------------T- 254 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc------------------------c-
Confidence 334444433 34666777775556778888888888888765444332221100 0
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.++. -+|-+-.+-+|...|+|.+|.....+.+..+-.|.++|.++++.++|+++||++.|..+++
T Consensus 255 ---------~vm~------qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 255 ---------DVMK------QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred ---------chhh------cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence 0000 1234566788999999999999998887777789999999999999999999999999999
Q ss_pred eecCCC
Q 022074 279 WEFPGN 284 (303)
Q Consensus 279 Wd~~~~ 284 (303)
||+..-
T Consensus 320 WDlR~~ 325 (545)
T KOG1272|consen 320 WDLRNF 325 (545)
T ss_pred eeeccc
Confidence 998754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-11 Score=108.80 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=129.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----EEecccCCeEEEEEcc----CCCcEEEEecCCCeEEEEcCcc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGD----ESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~----~~~~h~~~v~~l~~~~----~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
+....++..|++|+--- ...+++|+.+.+.... +..-.....+|-.|+. +.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44445555677665433 3358889887543221 1111111223333421 2344566788888998887531
Q ss_pred ccCCCccceeec--c--cccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 114 LNVKGKPAGVLM--G--HLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 114 ~~~~~~~~~~~~--~--h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
....+.+. . ....|+++.|-+ +..+++.+-.+|.+.++|...... .+ ...+ ..
T Consensus 205 ----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~-~t------~p~~-----------~~ 262 (636)
T KOG2394|consen 205 ----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG-AT------APSY-----------QA 262 (636)
T ss_pred ----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc-CC------CCcc-----------cc
Confidence 11111111 1 235688888876 456788888999999999732110 00 0000 00
Q ss_pred ccCCCCCcceEEecccceeeeEEE------eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRC------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+.....-.+.+.+.+.....+.++ ...-.|++||++||+.++||.+||+|..+.+++..++..-+...||+|||
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 000000001111111100111111 12234889999999999999999999999988888877778899999999
Q ss_pred CCCeEEEEeCCCCEEEeecCC
Q 022074 263 SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~ 283 (303)
||+++++|++|-.+.+|.+..
T Consensus 343 DGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred CccEEEecCCcceEEEEEecc
Confidence 999999999999999999753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=107.35 Aligned_cols=218 Identities=19% Similarity=0.179 Sum_probs=133.0
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
.+-+.|++. +|.+... ...|..++.+..|+|||+.|+..+.+ ..|++||+.++... .+....+......|+|+
T Consensus 183 ~~~l~i~D~-~g~~~~~--lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 183 RYALQVADS-DGYNPQT--ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPD 258 (433)
T ss_pred eEEEEEECC-CCCCceE--eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCC
Confidence 344556654 4544322 23456679999999999999887743 46999999887643 34444445567889875
Q ss_pred CCcEEEEecCCC--eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccC
Q 022074 93 SGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 93 ~~~~l~s~s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
...++++.+.+| .|++||+... ....+..+.......+|+++|++|+..+ .++...+|.+...... .
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g-----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~--~--- 328 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSR-----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS--A--- 328 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCC-----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--e---
Confidence 444555666655 5888887522 1233444444455678999999887665 4555455543211000 0
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEE
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVA 246 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~ 246 (303)
...+..+. ....+.+||+|++++..+.++ .|++||+.+++..
T Consensus 329 --------------------------~~lt~~g~--------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~- 373 (433)
T PRK04922 329 --------------------------ERLTFQGN--------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR- 373 (433)
T ss_pred --------------------------EEeecCCC--------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence 00000010 012356889999988765433 6999999887654
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCC---CCEEEeecCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPG 283 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~D---g~i~~Wd~~~ 283 (303)
.+. +........|+|||++|+..+.+ ..|.+++..+
T Consensus 374 ~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 374 TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 333 32345677999999987766653 3577777654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-11 Score=101.38 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=139.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCC--CeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~lWd 110 (303)
.+.+.+|..+... | .+|++|-.+|.+++|..+.+.. ......-..++..+.-.+.....+++|++. ..+++||
T Consensus 102 ~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred ccccccccchhhc-C-CEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeee
Confidence 3444556555554 3 3688888999999998884431 111223336788888777777888899998 8999999
Q ss_pred CccccCCCccceee---cccccCe--EEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 111 RRCLNVKGKPAGVL---MGHLEGI--TFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 111 ~~~~~~~~~~~~~~---~~h~~~v--~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
+....+........ .+-.-+| +.+.|-+. ...|+++..-+.+|+||.+....... .+++.
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~--------~fd~~----- 246 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA--------QFDFL----- 246 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee--------Eeccc-----
Confidence 85221111101000 0111122 23445554 56799999999999999985321110 00000
Q ss_pred CCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCeEEEEECC
Q 022074 184 PQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHP 262 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp 262 (303)
...+. +...-|++.++++|..-|.+..+|.+.++.+.. +++-.+.|.++.-+|
T Consensus 247 ----------E~~is----------------~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 247 ----------ENPIS----------------STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP 300 (412)
T ss_pred ----------cCcce----------------eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC
Confidence 00000 001235788999999999999999999998776 888899999999999
Q ss_pred CCCeEEEEeCCCCEEEeecCC
Q 022074 263 SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++++||++|-|+.++++|.+.
T Consensus 301 ~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 301 THPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCceEEeeccceeEEEeeccc
Confidence 999999999999999999876
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-11 Score=110.05 Aligned_cols=239 Identities=15% Similarity=0.182 Sum_probs=158.8
Q ss_pred EEEccCchhhccccccccccCcC--cc--cccCCCcccceEEEEEcCCCCE--EEEeeCCCeEEEEECCCCceE-----E
Q 022074 7 IVDVGSGTMESLANVTEIHDGLD--FS--AADDGGYSFGIFSLKFSTDGRE--LVAGSSDDCIYVYDLEANKLS-----L 75 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~v~~l~~s~~g~~--l~sgs~Dg~v~lwd~~~~~~~-----~ 75 (303)
|-.+-.|.-..-+-+|+.--|.. .+ -.-...|..++..+.|..+..- ++++|.||.|..|+++.-... .
T Consensus 255 p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 255 PNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred cceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 33333455566778888765554 22 2233789999999999975444 999999999999987654321 1
Q ss_pred EEecc-------cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC----ccceeecccccCeEEEEeCCCCCEEE
Q 022074 76 RILAH-------TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG----KPAGVLMGHLEGITFIDSRGDGRYLI 144 (303)
Q Consensus 76 ~~~~h-------~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~ 144 (303)
....| ..+++++.|.+.+.+.|+.|+.+|.|.-=+........ +....+..|.+.|.++.++|=...++
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 11111 13678899977778899999999999763221111111 22334566888999999988766655
Q ss_pred EEeCCCcEEEEEcccc-cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 145 SNGKDQAIKLWDIRKM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
..+.|-+|+||..... .+.. .+..+. ..+....|+|. ...
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~----------------------------------~~~~~~--~~v~~vaWSpt---rpa 455 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLL----------------------------------SLDSSP--DYVTDVAWSPT---RPA 455 (555)
T ss_pred eeeccceeEeccccCCCCcch----------------------------------hhhhcc--ceeeeeEEcCc---Cce
Confidence 4444999999976521 1100 000000 00122334432 235
Q ss_pred EEEEEeCCCeEEEEECCCC--eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 224 YIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~--~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|+++..||.|.+||+... +++...+.+....+.+.|++.|++|+.|+..|+++++++..+
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 7899999999999999654 345555566677889999999999999999999999999643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=110.76 Aligned_cols=182 Identities=15% Similarity=0.180 Sum_probs=125.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|..++.|-.|+|||.-|++++.||.|++|.- +|-+...+......|.|++|.|++.+.+++.+..-.|+- +.
T Consensus 101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp--L~--- 174 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP--LA--- 174 (737)
T ss_pred hhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee--cc---
Confidence 589999999999999999999999999999965 333333344556789999998887888887776444432 21
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.+.+ +-....|.+-|.+++|++..+++++||.|-..++||--......+
T Consensus 175 ~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S------------------------------ 223 (737)
T KOG1524|consen 175 ANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS------------------------------ 223 (737)
T ss_pred cccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC------------------------------
Confidence 2222 334567888899999999999999999999999999532111100
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..|...++ +..|.|+ +.++.++. .++| --+...+.|..++||+||.+++.|...|.
T Consensus 224 -----~~~ey~IT------Sva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 224 -----AAEEYAIT------SVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred -----Chhcccee------eeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCce
Confidence 00111111 2235566 44444432 2233 11344578999999999999999998887
Q ss_pred EEE
Q 022074 276 VVR 278 (303)
Q Consensus 276 i~~ 278 (303)
+.+
T Consensus 280 v~~ 282 (737)
T KOG1524|consen 280 LIV 282 (737)
T ss_pred EEE
Confidence 764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-10 Score=93.92 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=128.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCe--EEEEEccCCCcEEEEecCC------CeEEEEcCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDD------NLCKVWDRR 112 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~d------g~v~lWd~~ 112 (303)
...+++|+-|..-+++|..+| .+||+.+.-++......+.++. ..+-|- ..-+.+.|+.+ ..|.+||-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD- 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD- 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence 366799999999999998888 9999887644322222222221 111221 12233344433 36889992
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc-cc---CCcccccCccceeeeceeeeCCCC--C
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MS---SNASCNLGFRSYEWDYRWMDYPPQ--A 186 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~--~ 186 (303)
...+++..+ .....|.++.+.++ .|+.. .++.|.+|.... ++ .......+ .. .+.+.+. .
T Consensus 83 ---~k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP-kG------lC~~~~~~~k 148 (346)
T KOG2111|consen 83 ---LKERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP-KG------LCSLCPTSNK 148 (346)
T ss_pred ---ccCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC-Cc------eEeecCCCCc
Confidence 223333333 35667888887665 45544 358899997542 11 10000000 00 0111110 0
Q ss_pred ccccCCCCC--cc-------------eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEee-
Q 022074 187 RDLKHPCDQ--SV-------------ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALK- 249 (303)
Q Consensus 187 ~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~- 249 (303)
..+..|... .+ .....|...+.+ ...+-+|..+||+|+.|+ |||||..+|+++.++.
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac------v~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC------VALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE------EEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 111111100 00 112222222211 124567999999999998 8999999999998885
Q ss_pred -cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 -YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 -~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.....|.+++|||+..+||.+|+.|+++++.+...
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 33468999999999999999999999999998754
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=108.99 Aligned_cols=219 Identities=16% Similarity=0.244 Sum_probs=136.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEE-ECCCCceEEEEecccCCeEEEEE----c---cCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVY-DLEANKLSLRILAHTSDVNTVCF----G---DESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lw-d~~~~~~~~~~~~h~~~v~~l~~----~---~~~~~~l~s~s~dg~v~ 107 (303)
+.|.--|.|+.|+.+...+.+++ |..+.+| |+.+.. .....-....+....+ + ....+.|+.++.||.+.
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cccceeEEeecccccceEEEecc-CceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 46666788999998887666655 5555555 444332 2111111122221111 0 11345788899999998
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC--CcccccCccceeeeceeeeCCCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS--NASCNLGFRSYEWDYRWMDYPPQ 185 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 185 (303)
+-+. .++.......|.+++.+-.|+++|.-|+|+|.||.|++|.-..+.. ..+.....++..| .|+
T Consensus 89 il~k-----~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W-------~p~ 156 (737)
T KOG1524|consen 89 ILNK-----SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW-------APN 156 (737)
T ss_pred Eecc-----cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE-------CCC
Confidence 8763 3455566778999999999999999999999999999997443211 1111122233333 333
Q ss_pred CccccCCC-----------CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 022074 186 ARDLKHPC-----------DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254 (303)
Q Consensus 186 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~ 254 (303)
...+..+. ..++..+..|..+. + +..+++...++++||+|=..++||. .|..+.....|+.|
T Consensus 157 S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGii--L----~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 157 SNSIVFCQGGHISIKPLAANSKIIRWRAHDGLV--L----SLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYA 229 (737)
T ss_pred CCceEEecCCeEEEeecccccceeEEeccCcEE--E----EeecCccccceeecCCceeEEeecc-cCcccccCChhccc
Confidence 22221111 11223344444322 2 2335667889999999999999997 57778888899999
Q ss_pred eEEEEECCCCCeEEEEeCCCCEE
Q 022074 255 VRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 255 I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
|++++|+|+ ..++-+|. .+++
T Consensus 230 ITSva~npd-~~~~v~S~-nt~R 250 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSY-NTAR 250 (737)
T ss_pred eeeeeeccc-cceeeeee-eeee
Confidence 999999999 55665654 3555
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.6e-10 Score=103.71 Aligned_cols=144 Identities=24% Similarity=0.250 Sum_probs=104.4
Q ss_pred EEEccCchhhc--------cccccc--cccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC---Cce
Q 022074 7 IVDVGSGTMES--------LANVTE--IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKL 73 (303)
Q Consensus 7 ~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~---~~~ 73 (303)
+++.++|.+-+ .+.|.. .+++..- ..--|...+.+.++||+++++++|..||.|.+|.--. ...
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 56667766653 334444 2222222 2246888899999999999999999999999995533 122
Q ss_pred -EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 74 -SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 74 -~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
...+.=|...|+++.|++ ++.+|+||+..|.+.+|-+... + ..-+..-...|..+.++||+.+.+..-.|.+|
T Consensus 243 t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~----~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETG----K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred cceEEEecccccceeEEec-CCceEeecccceEEEEEeecCC----C-cccccccCCeeEEEEEcCCCCeEEEEecCceE
Confidence 233445778999999975 5789999999999999987522 2 22233335678999999999999888899999
Q ss_pred EEEEccc
Q 022074 153 KLWDIRK 159 (303)
Q Consensus 153 ~lWdl~~ 159 (303)
.+-....
T Consensus 317 ~li~~~d 323 (792)
T KOG1963|consen 317 HLIKASD 323 (792)
T ss_pred EEEeccc
Confidence 9987643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=92.89 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=131.8
Q ss_pred ceEEEEEcCCCCEEEEeeCC--CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~D--g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
.|.-+-|+.. .+|..+.+ +.+++++.+.+..++.+.- ...|-++..+ .++|+.+=++ .|++||++.-..-
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~IL~VrmN---r~RLvV~Lee-~IyIydI~~MklL- 119 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKLL- 119 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEec-CCceEEEEEc---cceEEEEEcc-cEEEEecccceee-
Confidence 4555666643 34443333 3588888888877665432 2357777775 3566666555 4999998743211
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
..+.....+..++.++++++++.|++--+ .-|.|.+||+-....
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~---------------------------------- 165 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP---------------------------------- 165 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee----------------------------------
Confidence 11212223556688888888888887432 368999999754322
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEeecC--CCCeEEEEECCCCCeEEEEeCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~h--~~~I~~v~~sp~~~~las~s~D 273 (303)
+..+..|..... ..+|+++|.+||||++.|+ |||+.+.+|+++++|.-- ...|.+++|||+.++|++.|..
T Consensus 166 v~~I~aH~~~lA------alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 166 VNTINAHKGPLA------ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eeEEEecCCcee------EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 112222221111 2358899999999999997 899999999999988522 3468899999999999999999
Q ss_pred CCEEEeecCC
Q 022074 274 GDVVRWEFPG 283 (303)
Q Consensus 274 g~i~~Wd~~~ 283 (303)
+++++|.+..
T Consensus 240 eTVHiFKL~~ 249 (391)
T KOG2110|consen 240 ETVHIFKLEK 249 (391)
T ss_pred CeEEEEEecc
Confidence 9999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=111.33 Aligned_cols=196 Identities=23% Similarity=0.328 Sum_probs=141.6
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE---EEEE-ccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN---TVCF-GDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~---~l~~-~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.|....+.-+.+.++..+.++.+.+||...+....++. +...+. ++-+ ...+.-++++|+--+.+.+|+.. .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~---~ 164 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH---E 164 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc---c
Confidence 34445556667788889999999999999887654433 333222 1112 12334578899999999999975 2
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
...+. .+.||.+.+..+.++.+|+++++.|.|+++|+|++...+...
T Consensus 165 dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------------- 211 (967)
T KOG0974|consen 165 DNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------------- 211 (967)
T ss_pred cCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------------------------------
Confidence 22333 678999999999999999999999999999999987543211
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEEeCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
...-||.... ..+. |.++ .++|+++|=++++|+. +++.+..+++|. .-|+.++.+++...++|++.|+.
T Consensus 212 -~~~fgHsaRv--w~~~----~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 212 -CTGFGHSARV--WACC----FLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred -ccccccccee--EEEE----eccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 0111122111 1222 3344 7999999999999976 456666888886 57999999999999999999999
Q ss_pred EEEeecCC
Q 022074 276 VVRWEFPG 283 (303)
Q Consensus 276 i~~Wd~~~ 283 (303)
+++|+..+
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.5e-11 Score=108.37 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=122.4
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEE--ECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
-+.+|++-+|....-....||. .+++|+|||+.|+.++ .+|.+.|| |+.++.. .++..+...+....|+|+ +
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpD-G 303 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPD-G 303 (429)
T ss_pred EEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCC-C
Confidence 3455665444321111123443 3689999999888765 67765555 6666653 456666667788999865 5
Q ss_pred cE-EEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 95 HL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 95 ~~-l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+. ++++..++...+|+.... ......+ ++.. ....++|+|++|+..+.++ +.+||+......
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~---~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~---------- 366 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSAS---GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE---------- 366 (429)
T ss_pred CEEEEEECCCCCceEEEEECC---CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE----------
Confidence 54 555567888899976421 1112222 3333 3467899999998887765 455887532110
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC--CCCeEEEEeecC
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL--VSGEQVAALKYH 251 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~--~~~~~~~~~~~h 251 (303)
.+.... ....+.|+|++++|+.++.++.+.+|++ .+|+....+..|
T Consensus 367 -------------------------~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 367 -------------------------VLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred -------------------------EecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC
Confidence 000000 0023568899999999999998888875 357777888888
Q ss_pred CCCeEEEEECCC
Q 022074 252 TSPVRDCSWHPS 263 (303)
Q Consensus 252 ~~~I~~v~~sp~ 263 (303)
.+.+.+.+|||-
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 889999999984
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=97.23 Aligned_cols=192 Identities=14% Similarity=0.239 Sum_probs=127.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
+..++|++-=..++++..|.+||+||-... ....+.. -...|.+++|-|-..+.|+.|.. +-|.+|.........++
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRN 178 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccc
Confidence 778899986666888999999999988773 3333332 23589999998777777777775 46889976422111121
Q ss_pred --------ceee--cccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 121 --------AGVL--MGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 121 --------~~~~--~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
...+ .|| ..|+++.+.+||..+++++ .|..|.|||........-...
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--------------------- 236 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--------------------- 236 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------------
Confidence 1112 233 5699999999999999988 478999999864321100000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCe-E
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPM-L 267 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~-l 267 (303)
...| .....+|||+.+|.++.-|+..++|+..+. ....-. .-.+.|....|+|+|++ |
T Consensus 237 ---------glgg----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 237 ---------GLGG----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred ---------CCCc----------eeeEEEcCCCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEE
Confidence 0000 012347899999999999999999965433 233322 23358999999999986 4
Q ss_pred EEEeCCCCEE
Q 022074 268 VSSSWDGDVV 277 (303)
Q Consensus 268 as~s~Dg~i~ 277 (303)
.+.+..-.+.
T Consensus 297 f~~sgsp~ly 306 (445)
T KOG2139|consen 297 FACSGSPRLY 306 (445)
T ss_pred EEEcCCceEE
Confidence 4554444443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-09 Score=90.83 Aligned_cols=202 Identities=17% Similarity=0.315 Sum_probs=135.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe---cccCCeEEEEEccCCCcEEE--EecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIY--SGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~--s~s~dg~v~lWd~ 111 (303)
-+--+|.++.++. ++|+++-.+. |+|||+++-++..++. .+..++.++.+++. +.+++ .....|.|.+||+
T Consensus 85 ~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 85 FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEc
Confidence 3445788888875 4677776665 9999999988776554 34456777777543 33544 2334789999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCc-EEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~-v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
. +.++...+..|.+++-+++|+++|.+|||++.-|+ ||++.+.....
T Consensus 161 ~----nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k---------------------------- 208 (391)
T KOG2110|consen 161 I----NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK---------------------------- 208 (391)
T ss_pred c----cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----------------------------
Confidence 4 44566777889999999999999999999997665 57887643211
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---------------------------
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--------------------------- 243 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--------------------------- 243 (303)
+..+.... ......+..|++++++|++.|..++|+++.++...
T Consensus 209 ------l~eFRRG~----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps 278 (391)
T KOG2110|consen 209 ------LYEFRRGT----YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPS 278 (391)
T ss_pred ------eeeeeCCc----eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcch
Confidence 11111111 01122456789999999999999999999875421
Q ss_pred EE----------EEeecCCCCe-EEEEECC--CCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QV----------AALKYHTSPV-RDCSWHP--SQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~----------~~~~~h~~~I-~~v~~sp--~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+ ...+...... ..+.+.+ ..+.+..++.||.+..+.++..
T Consensus 279 ~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 279 QVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 00 0001111111 3444553 5678889999999999998764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=108.95 Aligned_cols=246 Identities=17% Similarity=0.222 Sum_probs=135.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCC--cEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG--HLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~s~dg~v~lWd~~~ 113 (303)
+|.+.....-.|++|+++++... +.+|.||...++.....+..|...+..+.+.+... .++.+++.||+|++||.+.
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred ccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 45555566677999999888765 45799999999988888889999999998866554 5677999999999999753
Q ss_pred ccCCCccceeecccccCeEEEEeCC---CCCEEEEEeC-C------------CcEEEEEcccccCCcccccCccceeeec
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGK-D------------QAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~-D------------~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
. ...+++..+ ..+..+.+.+ +-...+..+. | ++++-+.+.+.... ...+..-.-..
T Consensus 92 ~----~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~---~~d~~~~~~~~ 163 (792)
T KOG1963|consen 92 G----ELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA---KGDFLKEHQEP 163 (792)
T ss_pred c----EEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecccc---chhhhhhhcCC
Confidence 2 223322211 1111111100 0001111111 1 11111111110000 00000000000
Q ss_pred eeeeCCCCC--ccccCCCCCcceEEeccc-----ceeeeEEEe----eeeeeeCCCeEEEEEeCCCeEEEEECCC--Ce-
Q 022074 178 RWMDYPPQA--RDLKHPCDQSVATYKGHS-----VLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVS--GE- 243 (303)
Q Consensus 178 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~s~~~~~latg~~dg~i~iwd~~~--~~- 243 (303)
+.+.+.+.+ ..+.+.| .+..+.-+. .......-| ....+||.++++|+|..||.|.+|.--. .+
T Consensus 164 ~~I~~~~~ge~~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMC--KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEEee--eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 000000000 0001111 011110000 000000001 1234789999999999999999996432 22
Q ss_pred -EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC-CccCCCCc
Q 022074 244 -QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN-GEAAPPLN 292 (303)
Q Consensus 244 -~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~-~~~~~~~~ 292 (303)
....+.-|..+|++++||+||.+|.|||.+|.+.+|....+ +.-.|++.
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg 292 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLG 292 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccC
Confidence 23456789999999999999999999999999999998765 33355554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=105.39 Aligned_cols=189 Identities=16% Similarity=0.331 Sum_probs=125.8
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
.|..++|.|+ +..|+.+.. ..+.+||.. .+.....+.+|.+.|.+++++.+|+.+++|+.|+.|.+|.-... -
T Consensus 14 ci~d~afkPD-GsqL~lAAg-~rlliyD~n----dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G 86 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-SRLLVYDTS----DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-G 86 (1081)
T ss_pred chheeEECCC-CceEEEecC-CEEEEEeCC----CcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-c
Confidence 7889999765 555544443 378899975 45667788999999999999999999999999999999975421 1
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc-c---eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS-V---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
...+ +..-.+..+.+.|..+.+..+....-.-+...+ . .+...++..+ .+..||++++.|-.+|+|.+-+
T Consensus 87 ~LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~C-sWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 87 ILKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICC-SWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred eeee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEe-eecCCCcEEEEeccCceEEeec
Confidence 1111 112223445565655555443322111111100 0 0111222211 2557899999999999999986
Q ss_pred CCCCeEEEEe---ecCCCCeEEEEECCCC-----CeEEEEeCCCCEEEeecCCCC
Q 022074 239 LVSGEQVAAL---KYHTSPVRDCSWHPSQ-----PMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 239 ~~~~~~~~~~---~~h~~~I~~v~~sp~~-----~~las~s~Dg~i~~Wd~~~~~ 285 (303)
. ++++-..+ .+...||++++|+|.. ..++..++..++.++.+.+..
T Consensus 161 k-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~ 214 (1081)
T KOG1538|consen 161 K-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ 214 (1081)
T ss_pred C-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee
Confidence 4 45543333 3577899999999963 389999999999999987653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-10 Score=103.74 Aligned_cols=216 Identities=21% Similarity=0.303 Sum_probs=138.1
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCc----------eEEEEe
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK----------LSLRIL 78 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~----------~~~~~~ 78 (303)
-|||=|.-+.||+-..-+ .--...+||...|+++.|-| +.+.+++|..|..|+|||+...+ ...-+.
T Consensus 66 ~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~ 144 (758)
T KOG1310|consen 66 ASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS 144 (758)
T ss_pred eecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhh
Confidence 367778888999987433 33456699999999999998 46689999999999999998522 112244
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce-------eecccccCeEEEEeCCCC-CEEEEEeCCC
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQ 150 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~D~ 150 (303)
-|...|..++..|..++.|.++++||+++-+|+|... ...+.. .+....-...++.++|.. .+|+.|+.|-
T Consensus 145 cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp 223 (758)
T KOG1310|consen 145 CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP 223 (758)
T ss_pred hhhhhhhheecCCCCCceEEEecCCcceeeecccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCc
Confidence 5888888888877777999999999999999998421 111111 111112235577888754 6789999999
Q ss_pred cEEEEEcccccCCc-ccccCccceeeeceeeeCCCCCccccCCCCCcceEEe-cc-----cceeeeEEEeeeeeeeCCCe
Q 022074 151 AIKLWDIRKMSSNA-SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GH-----SVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 151 ~v~lWdl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~s~~~~ 223 (303)
-.|+||.|+..... +... +..+|.. ..+++.-+. +| ........|..-..|+|+|.
T Consensus 224 farLYD~Rr~lks~~s~~~-----------~~~~pp~------~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGt 286 (758)
T KOG1310|consen 224 FARLYDRRRVLKSFRSDGT-----------MNTCPPK------DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGT 286 (758)
T ss_pred hhhhhhhhhhccCCCCCcc-----------ccCCCCc------ccchhheecCccccCcccccccceeeeEEEEECCCCc
Confidence 99999976533211 1000 0011100 000111110 11 01112233333445889988
Q ss_pred EEEEEeCCCeEEEEECCCCeEE
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~ 245 (303)
.|+..-....|+++|+..++..
T Consensus 287 ElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 287 ELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEEEeeCCeEEEEEeecCCCCc
Confidence 7777666678999999877654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=92.43 Aligned_cols=201 Identities=15% Similarity=0.136 Sum_probs=132.4
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.-|...|.+|+|+|..+.|++|+.|...+||....+.. ...+..++...+++.|+| +.+.|++||.-..|.+|=.+
T Consensus 52 s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E 130 (361)
T KOG1523|consen 52 SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYE 130 (361)
T ss_pred hhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEe
Confidence 45667999999999999999999999999999954432 244678999999999976 57899999999999888543
Q ss_pred cccCCC---ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 113 CLNVKG---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 113 ~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
..+ .. +.++ .-+...|+++++++++-+|+.|+.|+.+|++..--. .++. +. .-+|-...+
T Consensus 131 ~EN-dWWVsKhik--kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK-----------~Vde--kp-ap~pWgsk~ 193 (361)
T KOG1523|consen 131 QEN-DWWVSKHIK--KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK-----------GVDE--KP-APTPWGSKM 193 (361)
T ss_pred ccc-ceehhhhhC--CccccceeeeeccCCcceecccccCcceeEEEEeee-----------cccc--CC-CCCCCccCC
Confidence 211 11 1111 125678999999999999999999999999963110 0000 00 000001111
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp 262 (303)
.. .+.+..+.... .......|+++|..|+=.+.|..+.+=|..... .+..+..-.-|..++.|-.
T Consensus 194 PF--G~lm~E~~~~g------gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 194 PF--GQLMSEASSSG------GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred cH--HHHHHhhccCC------CceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 00 11111111000 111223478889999999999999999987654 3444444447888888844
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-10 Score=101.18 Aligned_cols=200 Identities=18% Similarity=0.317 Sum_probs=137.7
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc--ce
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP--AG 122 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~--~~ 122 (303)
+.++.-.-.|++++....|+-++++.|+....+....++++++..++. ..+|++|+.+|.|-.||.|+..-.+.. ..
T Consensus 139 m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 139 MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeeccc
Confidence 455532333555555556999999999988777777789999999754 558889999999999998743211110 00
Q ss_pred eecccc-----cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 123 VLMGHL-----EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 123 ~~~~h~-----~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
.+..|. ..|+++.|+.+|-.++.|..+|.+.|||||...+.....++.
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~--------------------------- 270 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGY--------------------------- 270 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCC---------------------------
Confidence 111232 349999999999999999999999999999755432222111
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
...+....|.+. .++..+++. ....++|||-.+|+....++ .+..++++++-|++.++++|-++..+.
T Consensus 271 --------e~pi~~l~~~~~--~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 271 --------ELPIKKLDWQDT--DQQNKVVSM-DKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSGMFFTANESSKMH 338 (703)
T ss_pred --------ccceeeeccccc--CCCceEEec-chHHhhhcccccCCceeecc-ccCCcCceeeecCCceEEEecCCCcce
Confidence 001111122211 223344443 45679999999999887776 445699999999999999999999998
Q ss_pred EeecCCC
Q 022074 278 RWEFPGN 284 (303)
Q Consensus 278 ~Wd~~~~ 284 (303)
-+-++..
T Consensus 339 ~yyiP~L 345 (703)
T KOG2321|consen 339 TYYIPSL 345 (703)
T ss_pred eEEcccc
Confidence 8877654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=104.63 Aligned_cols=209 Identities=18% Similarity=0.223 Sum_probs=134.9
Q ss_pred CcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCC--c-----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 37 GYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN--K-----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 37 ~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~--~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
=|+..|..++.++. +.++++||.||+|++|++..- . ...++......+.++... .+++.++.++.||.|++
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEEEEcCCCeEEE
Confidence 47778888888865 489999999999999988541 1 112333345677777774 46789999999999999
Q ss_pred EcCccccCCC---ccceeeccccc-CeEEE-EeCC-CC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 109 WDRRCLNVKG---KPAGVLMGHLE-GITFI-DSRG-DG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 109 Wd~~~~~~~~---~~~~~~~~h~~-~v~~~-~~~~-~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
.++...+... ...+....+.+ .+..+ ++.. .+ ..++-+..-+.+-.||+|........+...
T Consensus 1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~----------- 1193 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL----------- 1193 (1431)
T ss_pred EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc-----------
Confidence 9876432211 11112222332 23332 2322 22 367788888999999998753221111100
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSW 260 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~~~I~~v~~ 260 (303)
.|... .+.+.++.+.++++|...|.+.+||++=+.++...+ .+..+|+.+..
T Consensus 1194 --------------------~hG~v-------TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1194 --------------------RHGLV-------TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred --------------------cccce-------eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEe
Confidence 00100 122345678899999999999999999887776654 34578888887
Q ss_pred CCCCC---eEE-EEe-CCCCEEEeecCCC
Q 022074 261 HPSQP---MLV-SSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~---~la-s~s-~Dg~i~~Wd~~~~ 284 (303)
+|.-+ ..+ +++ ..+.+.+|++...
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccC
Confidence 77644 444 444 5889999997543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-09 Score=96.69 Aligned_cols=190 Identities=20% Similarity=0.146 Sum_probs=117.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC--eEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~lWd~ 111 (303)
.+...+.+..|+|||++|+..+.+ ..|++||+.+++.. .+..+.+.+...+|+|+...++++.+.++ .|++||+
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 455578899999999999887654 47999999988643 34445566677889765333445655555 5778886
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCc--EEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~--v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
... ....+..+........|+++++.|+..+. ++. |.++|+.....
T Consensus 266 ~~~-----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-------------------------- 314 (417)
T TIGR02800 266 DGK-----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-------------------------- 314 (417)
T ss_pred CCC-----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE--------------------------
Confidence 421 12233334333445578899988876553 443 44455432100
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
..+..+. .....+.++|++++++..+.++ .|.+||+.++.. ..+... .......|+||++
T Consensus 315 ---------~~l~~~~------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 315 ---------RRLTFRG------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred ---------EEeecCC------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCC
Confidence 0000000 0112345788999988888776 899999987654 233222 2345668999999
Q ss_pred eEEEEeCCCC
Q 022074 266 MLVSSSWDGD 275 (303)
Q Consensus 266 ~las~s~Dg~ 275 (303)
+|+.++.++.
T Consensus 378 ~l~~~~~~~~ 387 (417)
T TIGR02800 378 MILYATTRGG 387 (417)
T ss_pred EEEEEEeCCC
Confidence 8877777653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=111.08 Aligned_cols=131 Identities=26% Similarity=0.353 Sum_probs=107.4
Q ss_pred ccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEE
Q 022074 19 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLI 97 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l 97 (303)
+=||.-. +++. +.-..||+..|+++.|+.||.++++.|.|.++|+|+++++.... ...+|...|..+++.+ + .+
T Consensus 157 iivW~~~-~dn~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i 231 (967)
T KOG0974|consen 157 IIVWKPH-EDNK-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RI 231 (967)
T ss_pred EEEEecc-ccCC-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--ee
Confidence 3466665 2222 23347999999999999999999999999999999999987554 6789999999999964 3 89
Q ss_pred EEecCCCeEEEEcCccccCCCccceeeccccc-CeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 98 ~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+|++.|.+.++|+. ++.....+.+|.. .+..++...+...++|++.|+.+++||+..
T Consensus 232 ~t~gedctcrvW~~-----~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGV-----NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeccceEEEEEec-----ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999999964 3344447778875 589999998888999999999999999753
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=91.54 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
-.++.|++.|..++++-.+|.+.+-+.....+.. .+..|.-......|+..+++++.+|+.|+.+.-||+|..+ ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--TF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc--ce
Confidence 4578888889999999999999866665555544 6788999999999987788999999999999999998321 11
Q ss_pred cceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccc
Q 022074 120 PAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
....-.-|..+|.++..+| .+.+++||+.|-.|++||+|.+
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 1122234888999987665 5789999999999999999964
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7e-11 Score=97.09 Aligned_cols=117 Identities=22% Similarity=0.379 Sum_probs=96.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceE--EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.-|+++|.++.|.+.-..=++|+.+..+..|+++.. .+. ....-.+.+|..+.+- ++++.++|+++|+.+|+|..
T Consensus 202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVysw 280 (323)
T KOG0322|consen 202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSW 280 (323)
T ss_pred hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEe
Confidence 579999999999987667788888888999988654 221 1222344678888884 56899999999999999987
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
+ +..+...+.-|.++|++++|+|+.++++.+|.|+.|.+|++
T Consensus 281 r----tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 281 R----TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred c----cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 6 45677788889999999999999999999999999999986
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.1e-10 Score=94.05 Aligned_cols=208 Identities=18% Similarity=0.294 Sum_probs=130.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----eEEEEeccc------------CCeEEEEEccC-CCcEEEEecCC
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILAHT------------SDVNTVCFGDE-SGHLIYSGSDD 103 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~-~~~~l~s~s~d 103 (303)
|.++.|...|++|++|..+|.|-+|.-.... ....++.|. ..|+.+.|.++ +...|+....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 7889999999999999999999999654322 222344443 36788888654 35577788889
Q ss_pred CeEEEEcCccccCCC-------------------------------ccceee-cccccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 104 NLCKVWDRRCLNVKG-------------------------------KPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 104 g~v~lWd~~~~~~~~-------------------------------~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
.++++|.++...... .+.+.+ ..|.--+++++++.|++.++++ .|=.
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLR 186 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLR 186 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-ccee
Confidence 999999864211110 000111 2356668889999998878776 5788
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSH 230 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~ 230 (303)
|.+|++......+.. .+.-|. . +..+ ..+++ +..|+| ....++-.++
T Consensus 187 INLWnlei~d~sFnI-------------VDIKP~-------n---mEeL---teVIT------saEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNI-------------VDIKPA-------N---MEEL---TEVIT------SAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eeeccccccCCceeE-------------EEcccc-------C---HHHH---HHHHh------hhccCHhHccEEEEecC
Confidence 999998643221110 000000 0 0000 00011 112333 2456777788
Q ss_pred CCeEEEEECCCCeEE----EEeecC------------CCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 231 DSCVYVYDLVSGEQV----AALKYH------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 231 dg~i~iwd~~~~~~~----~~~~~h------------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|+|+++|++..-+. +.++.. -..|.++.||+.|++++|-+. -++++||+..
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 999999999853211 111111 146899999999999999864 7999999863
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-09 Score=97.51 Aligned_cols=210 Identities=19% Similarity=0.248 Sum_probs=131.7
Q ss_pred CCcccceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccC--------------------------------
Q 022074 36 GGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTS-------------------------------- 82 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-------------------------------- 82 (303)
-+|...-..|..+|||+++ ++|...-.|++||+..-. .++..|.+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 4566677889999999985 556678899999996532 22222211
Q ss_pred ---------CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 83 ---------DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 83 ---------~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
....++++.++-++++.|+ ...|+-.++. .++-...+..-.+.++++.+++...+|++|+.||.|-
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLE----qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLE----QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeec-CcceEEEEcc----ccccccccccccccceeeeecCccceEEecccCceEE
Confidence 1123333333333443333 3345444543 2333444444557899999999888999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
.||.|..........+. . +....+.. ......+..|+.+|-.+++|..+|.
T Consensus 201 fwDpR~ksrv~~l~~~~--------------~-----------v~s~pg~~----~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAAS--------------S-----------VNSHPGGD----AAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred Eecchhhhhheeeeccc--------------c-----------cCCCcccc----ccCcceEEEecCCceeEEeeccCCc
Confidence 99998643322211100 0 00000000 0001112347777889999999999
Q ss_pred EEEEECCCCeEEEEeecC--CCCeEEEEECCC--CCeEEEEeCCCCEEEeecCC
Q 022074 234 VYVYDLVSGEQVAALKYH--TSPVRDCSWHPS--QPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 234 i~iwd~~~~~~~~~~~~h--~~~I~~v~~sp~--~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.|||+++.+++.. +-| ..||..++|.+. ++.++|.. ...+++||-..
T Consensus 252 v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~ 303 (703)
T KOG2321|consen 252 VLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECT 303 (703)
T ss_pred EEEEEcccCCceee-cccCCccceeeecccccCCCceEEecc-hHHhhhccccc
Confidence 99999999887644 344 469999999887 45677764 57899999653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-09 Score=94.02 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=136.7
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEec--c-cCCeEEEEEc------c-------------CCCcEEEEecCCCeE
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILA--H-TSDVNTVCFG------D-------------ESGHLIYSGSDDNLC 106 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--h-~~~v~~l~~~------~-------------~~~~~l~s~s~dg~v 106 (303)
|-..++|....||.+|+||...+++...+.. | .+-+.+..|. | .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999987655543 2 2334444552 1 022367778888999
Q ss_pred EEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 107 KVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
-+++.-.+ +....+ .+|.+.|+++..+.+-..|.|++.|..+-.|+......
T Consensus 83 ~~ys~~~g----~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~---------------------- 136 (541)
T KOG4547|consen 83 LLYSVAGG----EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI---------------------- 136 (541)
T ss_pred EEEEecCC----eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee----------------------
Confidence 99986422 222222 35888999998888878899999999999999754211
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC-
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS- 263 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~- 263 (303)
++.+++.... ..+..++||++.+++|+ +.|++||+++++.+..|.+|.++|.+++|--+
T Consensus 137 ------------~~~~~~~~~~------~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 137 ------------IRIWKEQKPL------VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred ------------eeeeccCCCc------cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 1112211111 01234678999999887 77999999999999999999999999999877
Q ss_pred ----C-CeEEEEeCCCCEEEeecCC
Q 022074 264 ----Q-PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 264 ----~-~~las~s~Dg~i~~Wd~~~ 283 (303)
| .+|.++..+.-+.+|-+..
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 3 4788888899999998754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=105.07 Aligned_cols=183 Identities=21% Similarity=0.243 Sum_probs=120.9
Q ss_pred CCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc---cceeecccccCeEEEEeCCCCCEEEEE
Q 022074 70 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVLMGHLEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 70 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~ 146 (303)
.|.++..+..|...|..++.+++.+.+|+|||.||+||+|+.+....... ...++.--...+..+...+.++++|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 45567778889999999999888778999999999999999863222211 112222234567788888889999999
Q ss_pred eCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EE
Q 022074 147 GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YI 225 (303)
Q Consensus 147 ~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l 225 (303)
+.||.|++.++..-. ....... +........+.. +..++... ...+. .+
T Consensus 1117 t~DG~v~~~~id~~~--~~~~~~~--------------~~ri~n~~~~g~------------vv~m~a~~--~~~~S~~l 1166 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYN--VSKRVAT--------------QVRIPNLKKDGV------------VVSMHAFT--AIVQSHVL 1166 (1431)
T ss_pred cCCCeEEEEEccccc--cccceee--------------eeecccccCCCc------------eEEeeccc--ccccceeE
Confidence 999999999876420 0000000 000000000001 11111000 01233 67
Q ss_pred EEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 226 YTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.+..-+.|..||+.+..-+-+++ ...+-|++++.+|.+++++.|..-|.+.+||+.
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR 1225 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee
Confidence 778888999999998775443332 334789999999999999999999999999974
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-09 Score=88.20 Aligned_cols=112 Identities=25% Similarity=0.434 Sum_probs=81.8
Q ss_pred CcccceEEEEEcCCCCEEEE--eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~s--gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~ 111 (303)
-.+.+|.+++|+|+|+.+++ |..++.|.|||++ ++....+ +...++.+.|+| ++++++.++. .|.+.+||.
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence 34456999999999998655 4467799999997 3333333 345788999976 5888888763 577999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC------CCcEEEEEcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------DQAIKLWDIR 158 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------D~~v~lWdl~ 158 (303)
+ +...+... .| ..++.+.|+|+|++|+++.. |..++||+..
T Consensus 133 ~----~~~~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 133 R----KKKKISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred C----CCEEeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 5 22223222 23 34778999999999998874 8899999874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-08 Score=91.78 Aligned_cols=200 Identities=20% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC--eEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~lWd 110 (303)
..++..+....|+|||+.|+..+.+ ..|.+||+.++... .+....+.+....|+|+...++++.+.++ .|++||
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 3456678999999999998876644 36899999888643 33333444557889765333444666665 577778
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEE--EEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKL--WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~l--Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+... ....+..+........|+++|+.++..+ .++...+ +|+..... .
T Consensus 274 ~~~~-----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---------------~--------- 324 (430)
T PRK00178 274 LASR-----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---------------E--------- 324 (430)
T ss_pred CCCC-----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---------------E---------
Confidence 6522 1223444444455667899998876554 3444444 44321100 0
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-S--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d-g--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+ ...+. ....+.++|++++++..+.+ + .|++||+.+++. ..+. +........|||||
T Consensus 325 ~l---------t~~~~--------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg 385 (430)
T PRK00178 325 RV---------TFVGN--------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNG 385 (430)
T ss_pred Ee---------ecCCC--------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCC
Confidence 00 00000 01134578889888776643 3 588999988764 2232 12223356899999
Q ss_pred CeEEEEeCC-C--CEEEeecCCC
Q 022074 265 PMLVSSSWD-G--DVVRWEFPGN 284 (303)
Q Consensus 265 ~~las~s~D-g--~i~~Wd~~~~ 284 (303)
++++-++.+ + .|.+.+..+.
T Consensus 386 ~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 386 TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CEEEEEEecCCceEEEEEECCCC
Confidence 987766543 3 3556666543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-08 Score=90.95 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=110.3
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---CCCeEEEEcCccccCCCccceeecccccCeEEEEeC
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (303)
..|.++|.++.. ...+..|...+....|+|+ ++.|+..+ .+..|.+||+... . ...+..+...+....|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g----~-~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETG----Q-RELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCC----c-EEEeecCCCcccCcEEC
Confidence 368888886554 3456678888999999865 66666554 3568999997532 1 22344455566677899
Q ss_pred CCCCEEE-EEeCCCc--EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEee
Q 022074 138 GDGRYLI-SNGKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 214 (303)
Q Consensus 138 ~~~~~l~-s~~~D~~--v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (303)
|+|+.|+ +.+.++. |.+||+..... ..+..+.. ...
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-----------------------------------~~Lt~~~~------~~~ 293 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRSGTT-----------------------------------TRLTDSPA------IDT 293 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCce-----------------------------------EEccCCCC------ccC
Confidence 9998765 6666666 44456542110 00000000 012
Q ss_pred eeeeeCCCeEEEEEeC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC---CCEEEeecCC
Q 022074 215 SPVYSTGQKYIYTGSH-D--SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPG 283 (303)
Q Consensus 215 ~~~~s~~~~~latg~~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D---g~i~~Wd~~~ 283 (303)
.+.|+||++.++..+. + ..|+++|...++. ..+..+...+....|||||+.|+..+.+ ..|.+||..+
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 3568899998887663 2 3689999876654 3343344567778999999998876654 3577788644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-09 Score=95.25 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCEEEEe-eCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE-EecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFSTDGRELVAG-SSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s~dg~v~lWd~~~~~~~ 117 (303)
+.+..|+|||+.|+.. +.+| .|++||++++... ++..+...+....|+|+ ++.++ +...++...+|.... .
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~---~ 319 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNI---N 319 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCC-CCEEEEEeCCCCCceEEEEEC---C
Confidence 4467999999988764 4454 5889999888654 44445556778899765 56554 444455556664321 1
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCC---CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D---~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
......+..+........++|+|++|+..+.+ ..+.+||+.....
T Consensus 320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------------------------------- 367 (429)
T PRK03629 320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------------------------------- 367 (429)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--------------------------------
Confidence 11122233333344567789999998776543 3466677643110
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe---EEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC---VYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~---i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
..+.... ....|.|+|||++|+.++.++. ++++++. |.....+..|.+.+...+|||
T Consensus 368 ---~~Lt~~~-------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 368 ---QVLTDTF-------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ---EEeCCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 0000000 0124668899999999887765 7777874 555566778888999999998
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=94.28 Aligned_cols=154 Identities=18% Similarity=0.275 Sum_probs=99.4
Q ss_pred EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 85 NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 85 ~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
.+++|+. ++..+++++.||++|+|+.. ....+..+..|...|..++|++||..|++-+.| ..++|+++.....+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~P----s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWP----SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecC----cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh
Confidence 5778864 57899999999999999953 223344566788999999999999999999999 99999987642211
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-----eEEEEEeCCCeEEEEEC
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-----KYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~latg~~dg~i~iwd~ 239 (303)
... .....+. ...|.| +.++ .+++....-+.|+.||+
T Consensus 222 ~~t--~~~k~~~--------------------------------~~~cRF----~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 222 RKT--PFSKDEM--------------------------------FSSCRF----SVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hcC--Ccccchh--------------------------------hhhcee----cccCCCceEEEEEecCCCCceeEEEe
Confidence 110 0000000 011111 1111 22222334445555554
Q ss_pred CCCeE---E--E-EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 240 VSGEQ---V--A-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 240 ~~~~~---~--~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...+. + . .+..+ ..|.+++.|++|+++|-|+.||.+-+.+...
T Consensus 264 ~~w~~~~~l~~~~~~~~~-~siSsl~VS~dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIKRF-KSISSLAVSDDGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred eeeccccccchhhhhhcc-CcceeEEEcCCCcEEEEeccCCcEEEEEece
Confidence 32211 1 1 11222 3699999999999999999999999998654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=80.24 Aligned_cols=230 Identities=16% Similarity=0.229 Sum_probs=147.9
Q ss_pred EccCch-hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-ceEEEEec--ccCCe
Q 022074 9 DVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILA--HTSDV 84 (303)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~--h~~~v 84 (303)
.||-|+ -.|--|=-+|||..+.-...+--+..+|.++.++++ .|++. -.+.|+||...+. +....+.. --.++
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGl 139 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGL 139 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCce
Confidence 455555 455556667888776667777788899999999975 45554 4567999988643 22222221 12346
Q ss_pred EEEEEccCCCcEEE-EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCc-EEEEEcccccC
Q 022074 85 NTVCFGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA-IKLWDIRKMSS 162 (303)
Q Consensus 85 ~~l~~~~~~~~~l~-s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~-v~lWdl~~~~~ 162 (303)
++++-+. +..+|+ =|-.-|+|.+-|+..... .+......|...|.+++.+.+|.++||+|..|+ |||||.+....
T Consensus 140 C~~~~~~-~k~~LafPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 140 CSLCPTS-NKSLLAFPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred EeecCCC-CceEEEcCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 6665432 233443 344678999999863221 134466789999999999999999999997665 79999865322
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~ 242 (303)
. ..+....... -.++.+|||+.++||++|..|+++|+.++..
T Consensus 217 l----------------------------------~E~RRG~d~A----~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 217 L----------------------------------QELRRGVDRA----DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred e----------------------------------eeeecCCchh----eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 1 1111000000 1123468999999999999999999987532
Q ss_pred e---E---------------------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 243 E---Q---------------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 243 ~---~---------------------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
. . ...+.-.+++..-++|-.+.+.++..+.||+-+-+.+.
T Consensus 259 ~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 259 ENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred CCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 1 1 01111224556667777776777777788888777654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.6e-09 Score=89.47 Aligned_cols=182 Identities=13% Similarity=0.150 Sum_probs=123.4
Q ss_pred cceEEEEEcCCCC-EEEEeeCC--CeEEEEECCCCceEEEEecc-cC--------CeEEEEEccCC-CcEEEEecCCCeE
Q 022074 40 FGIFSLKFSTDGR-ELVAGSSD--DCIYVYDLEANKLSLRILAH-TS--------DVNTVCFGDES-GHLIYSGSDDNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~g~-~l~sgs~D--g~v~lwd~~~~~~~~~~~~h-~~--------~v~~l~~~~~~-~~~l~s~s~dg~v 106 (303)
.++..+.-++.-. ++++|+.. ..+.|||+.+.+.+.+-..- ++ -++.+.|.++. ...|++++.-++|
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 4577777776544 55668888 77999999888433221111 11 23566775432 5689999999999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
|+||.+. ..+|+..+.--..+++++...|+++++++|..-+.+..||+|.......
T Consensus 229 R~YDt~~---qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--------------------- 284 (412)
T KOG3881|consen 229 RLYDTRH---QRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--------------------- 284 (412)
T ss_pred EEecCcc---cCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc---------------------
Confidence 9999862 3466766666677899999999999999999999999999987543211
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.++|.......+ ..+|..+++|++|-|.++||+|+++++++... .-...++.+-+.++-
T Consensus 285 ------------~~kg~tGsirsi------h~hp~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 285 ------------GLKGITGSIRSI------HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDDV 343 (412)
T ss_pred ------------ccCCccCCcceE------EEcCCCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCCc
Confidence 011111101111 13466789999999999999999997765432 223456777776543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=93.56 Aligned_cols=178 Identities=21% Similarity=0.340 Sum_probs=125.2
Q ss_pred EEEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-Cccc
Q 022074 45 LKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GKPA 121 (303)
Q Consensus 45 l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-~~~~ 121 (303)
++|+-+ |-. ++.+.+-.|-|-++.+|... ....++.|.++.|. ..+++++.|..+|.|...|+|+.++- +.+.
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q--sf~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ--SFQSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc--ccccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 466643 434 44455666889999998643 33466789999995 45789999999999999999976432 1222
Q ss_pred eeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
..+ -|..+|+++..-. ++.+|++.+-+|+|++||+|..+. ...+..+
T Consensus 293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-------------------------------~~~V~qY 340 (425)
T KOG2695|consen 293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-------------------------------KKSVMQY 340 (425)
T ss_pred EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-------------------------------ccceeee
Confidence 222 3888999987766 788999999999999999985432 2235556
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCeEEEEECC
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----TSPVRDCSWHP 262 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----~~~I~~v~~sp 262 (303)
.||......+..+. .+....++++|+|=+.|||.++.|.++.+++-. +..+++++|..
T Consensus 341 eGHvN~~a~l~~~v----~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 341 EGHVNLSAYLPAHV----KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eccccccccccccc----ccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence 66655443333332 234567888999999999999999998887532 33567777754
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.7e-10 Score=97.81 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=97.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
+|..+.|.|.-=.|++++..|.++--|+.+|+++..+..-.+.+..++.+|- +-.+-.|..+|+|.+|... ...+
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~----skeP 285 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPN----SKEP 285 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc-cceEEEcCCCceEEecCCC----Ccch
Confidence 6888899998777888899999999999999988777666677888888764 4578899999999999864 2344
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
...+..|.++|.++++.++|+|++|.|.|+.++|||+|...
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 55566799999999999999999999999999999999744
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-07 Score=88.35 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=112.5
Q ss_pred cceEEEEEcCCCCEEEEeeCC-C--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe--EEEEcCccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCL 114 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~D-g--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~lWd~~~~ 114 (303)
..+.+..|+|||+.|+..+.+ + .|++||+.+++.. .+....+......|+|+...++++.+.++. |.++|+...
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 456789999999988876543 2 5888899887643 233223344577897654434456667775 666675421
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
....+..+........|+++|+.|+..+ .++...+| |+..... .
T Consensus 297 -----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--------~-------------------- 343 (448)
T PRK04792 297 -----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--------S-------------------- 343 (448)
T ss_pred -----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--------E--------------------
Confidence 2233334444456678999998876544 44555555 3321100 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
..++.+.. ...+.++|++++++..+. ++ .|.++|+.+++.. .+... .......|+|||++|+
T Consensus 344 -----~Lt~~g~~--------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~ 408 (448)
T PRK04792 344 -----RLTFEGEQ--------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVI 408 (448)
T ss_pred -----EEecCCCC--------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEE
Confidence 00001100 113457889988877654 33 5677888877642 23222 1223458999999766
Q ss_pred EEeC-CCC--EEEeecCCC
Q 022074 269 SSSW-DGD--VVRWEFPGN 284 (303)
Q Consensus 269 s~s~-Dg~--i~~Wd~~~~ 284 (303)
-++. ++. +.+++..+.
T Consensus 409 ~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEEecCCceEEEEEECCCC
Confidence 5554 443 566666543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-08 Score=85.05 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=159.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC-CCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~-~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
-||-..|++...-|..+-+.+.+.|.++|||-- +.++-...+.. -..+++++.+.++ ...|+.|-.+|++.-+.+..
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvtefs~se 99 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSE 99 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc-ceEEEEEEecceEEEEEhhh
Confidence 477777888888888888999999999999933 33443222221 1257888888654 56788899999999886532
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc--cceeeeceeeeC----CCCCc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF--RSYEWDYRWMDY----PPQAR 187 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~ 187 (303)
.-......+....|...+..+-|+..-+++++.+.|+.+.---.+.......+.+.- ....++.. ..+ .....
T Consensus 100 dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~-~~fvGd~~gqvt 178 (404)
T KOG1409|consen 100 DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL-YAFVGDHSGQIT 178 (404)
T ss_pred hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE-EEEecccccceE
Confidence 111223455677899999999888888899999999886544333222111111000 00001100 000 00000
Q ss_pred c--ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCC
Q 022074 188 D--LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 188 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~ 264 (303)
. +....-+.+..+.+|..-.. ...+.+..+.|.+|..|..+-+||+.-+.. ..++.+|...|..+..-+..
T Consensus 179 ~lr~~~~~~~~i~~~~~h~~~~~------~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t 252 (404)
T KOG1409|consen 179 MLKLEQNGCQLITTFNGHTGEVT------CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT 252 (404)
T ss_pred EEEEeecCCceEEEEcCcccceE------EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh
Confidence 0 00001122333444432222 223456678899999999999999975543 45677899999999999999
Q ss_pred CeEEEEeCCCCEEEeecCCCCccCCCC
Q 022074 265 PMLVSSSWDGDVVRWEFPGNGEAAPPL 291 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~~~~~~~~~ 291 (303)
+.|.|+++||.|.+|+....+.+.+..
T Consensus 253 ~~l~S~~edg~i~~w~mn~~r~etpew 279 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNVKRVETPEW 279 (404)
T ss_pred eeeeeccCCCeEEEEeccceeecCccc
Confidence 999999999999999998887776654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-07 Score=85.13 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=115.5
Q ss_pred cceEEEEEcCCCCEE---EEeeCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC----eEEEEc
Q 022074 40 FGIFSLKFSTDGREL---VAGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWD 110 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l---~sgs~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~lWd 110 (303)
....+=.|||||+.+ ++...+| .|++.++.++... ++....+......|+|+...++++.+.+| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 345667899999852 2443343 5788899877643 34444455567789865334444443333 344466
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
+.... .+.+.....++........|+|||+.|+..+ .++...+|.+.......
T Consensus 264 ~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~------------------------- 317 (428)
T PRK01029 264 LETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ------------------------- 317 (428)
T ss_pred cccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc-------------------------
Confidence 54210 1122222222223345568999999877655 56777777543210000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
....+.... .....|.+||||+.|+..+.+ ..|++||+.+++.. .+......+....|+|||++
T Consensus 318 ------~~~~lt~~~------~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 318 ------SPRLLTKKY------RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLH 384 (428)
T ss_pred ------ceEEeccCC------CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCE
Confidence 000000000 011245688999988876543 47999999888753 33323345778999999997
Q ss_pred EEE-EeC--CCCEEEeecCCC
Q 022074 267 LVS-SSW--DGDVVRWEFPGN 284 (303)
Q Consensus 267 las-~s~--Dg~i~~Wd~~~~ 284 (303)
|+- +.. ...|.+|++.+.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEECCCCCceEEEEECCCC
Confidence 764 332 356777887653
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-09 Score=109.70 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=135.5
Q ss_pred EEEEcc--CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCC
Q 022074 6 HIVDVG--SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 6 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
||.+.+ +|+-|.++.+||--.|.+---....|- ..|..+.|+.+|+....+..||.+.+|... .+.....+.|+..
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~ 2294 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKA 2294 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcc
Confidence 555554 566677888888744444433333455 788999999999999999999999999876 3344556779988
Q ss_pred eEEEEEccCCCcEEEEec---CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 84 VNTVCFGDESGHLIYSGS---DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
...+.|-. ..+++++ .++.+.+||.- ...........|..+++++++-|...+|++||++|.|++||+|..
T Consensus 2295 ~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl---~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2295 LSDFRFIG---SLLATAGRSSDNRNVCLWDTL---LPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccceeeee---hhhhccccCCCCCcccchhcc---cCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 89998842 5677664 47899999953 122222334679999999999999999999999999999999853
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
+.. +.+ + ... ...++++|+..|+|+||++.
T Consensus 2369 ql~----h~~------------------------------~---------------~~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2369 QLR----HTF------------------------------Q---------------ALD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred HHH----HHh------------------------------h---------------hhh-hhheeeccCcccceEEEEcc
Confidence 211 000 0 001 24679999999999999998
Q ss_pred CCeEEEEee
Q 022074 241 SGEQVAALK 249 (303)
Q Consensus 241 ~~~~~~~~~ 249 (303)
.-..++++.
T Consensus 2399 ~~~ll~~~p 2407 (2439)
T KOG1064|consen 2399 EFGLLHTFP 2407 (2439)
T ss_pred ccchhhcCc
Confidence 877676654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-09 Score=63.88 Aligned_cols=39 Identities=31% Similarity=0.669 Sum_probs=36.9
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
++++.++.+|..+|++++|+|++++|+|++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-07 Score=86.92 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=105.3
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCccceeecccccCeEEEEeC
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (303)
..|.++|.+.. ....+..+...+...+|+|+ ++.++..+. ...|.+||+... . ...+......+....|+
T Consensus 176 ~~L~~~D~dG~-~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g----~-~~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQ-NAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATG----R-RRVVANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCC-CceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCC----C-EEEeecCCCCccceEEC
Confidence 35777776443 33445667778889999865 666665543 346999997532 1 12232233445577899
Q ss_pred CCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeee
Q 022074 138 GDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216 (303)
Q Consensus 138 ~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (303)
|||+.|+ +.+.++...||.+...... ...+..+.. ....+
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------------------~~~lt~~~~------~~~~~ 289 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG---------------------------------LRRLTQSSG------IDTEP 289 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC---------------------------------cEECCCCCC------CCcCe
Confidence 9998876 6778888888875421000 000000000 01134
Q ss_pred eeeCCCeEEEEEeC-CCeEEEE--ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCCC
Q 022074 217 VYSTGQKYIYTGSH-DSCVYVY--DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGN 284 (303)
Q Consensus 217 ~~s~~~~~latg~~-dg~i~iw--d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~~ 284 (303)
.|+|||+.|+..+. +|...+| +..+++. ..+..+.......+|||||++|+..+.++ .|.+||+...
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 58899998876654 4555555 5445443 22222223345679999999998777654 5999998654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-08 Score=83.26 Aligned_cols=215 Identities=17% Similarity=0.304 Sum_probs=130.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE---Eeccc-----CCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~---~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
++|..-|.+|+++.|++.++++ .|=.|.||.+.--..... +.+++ ..|++..|+|..-++|+-.+..|+||
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 5999999999999999999987 455699998864332222 23333 35778889887677888888899999
Q ss_pred EEcCccccCCCcccee------------ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCcccee
Q 022074 108 VWDRRCLNVKGKPAGV------------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFRSYE 174 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~~~~ 174 (303)
|-|.|....-...... +.+-..+|..+.|+++|+|+++=.. -+|++||+.... +......
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v------ 312 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV------ 312 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee------
Confidence 9998732111111111 1222346778899999999998754 799999985421 1111000
Q ss_pred eeceeeeCCCCCccccCCCC-CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEee---
Q 022074 175 WDYRWMDYPPQARDLKHPCD-QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALK--- 249 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~--- 249 (303)
+... ..++.+-... ++-..|.-.++.+++++.||+.....++++...|.. ..+++
T Consensus 313 ----------------h~~lr~kLc~lYEnD----~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr 372 (433)
T KOG1354|consen 313 ----------------HEYLRSKLCSLYEND----AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASR 372 (433)
T ss_pred ----------------hHhHHHHHHHHhhcc----chhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccc
Confidence 0000 0011100000 111112223566788999999999999999654421 11110
Q ss_pred -----------------cC-------------CCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 250 -----------------YH-------------TSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 250 -----------------~h-------------~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+- ...|...+|+|..+.+|.|..+ .+.++
T Consensus 373 ~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 373 KNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred cCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 00 1235567799999988888764 44443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-07 Score=79.55 Aligned_cols=256 Identities=16% Similarity=0.124 Sum_probs=130.7
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc-------cCCeEEE
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTV 87 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h-------~~~v~~l 87 (303)
|..++|++..++.-- .....|- .-.++++|+||++++++. .++++.++|.++.+....+... ...+..+
T Consensus 57 dg~vsviD~~~~~~v-~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 57 DGTVSVIDLATGKVV-ATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp TSEEEEEETTSSSEE-EEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred CCeEEEEECCcccEE-EEEecCC--CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 455677777666522 2222322 357899999999998876 5889999999998877665432 2356777
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEE-EeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~D~~v~lWdl~~~~~~~~~ 166 (303)
..++....++++--..+.|-+-|.... ..................+.++++|++. ......+-++|+...+.....
T Consensus 134 v~s~~~~~fVv~lkd~~~I~vVdy~d~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 134 VASPGRPEFVVNLKDTGEIWVVDYSDP---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EE-SSSSEEEEEETTTTEEEEEETTTS---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EecCCCCEEEEEEccCCeEEEEEeccc---cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 666654445555555577776675421 1111112222234556778999998765 456778889998764332221
Q ss_pred ccCccce--------------eeeceeeeCC---CCCc-ccc-CC--CCCcceEEecccceeeeEEEeeeeeeeCCCeEE
Q 022074 167 NLGFRSY--------------EWDYRWMDYP---PQAR-DLK-HP--CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225 (303)
Q Consensus 167 ~~~~~~~--------------~~~~~~~~~~---~~~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 225 (303)
..+.... .|........ .-.. ... +. ....+..+..... -....-+|+++++
T Consensus 211 ~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~-------glFi~thP~s~~v 283 (369)
T PF02239_consen 211 DTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG-------GLFIKTHPDSRYV 283 (369)
T ss_dssp E-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS-------S--EE--TT-SEE
T ss_pred eccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC-------cceeecCCCCccE
Confidence 1111000 0111100000 0000 000 00 0001111111000 0011237889998
Q ss_pred EEE----eCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEeCC--CCEEEeecCCC
Q 022074 226 YTG----SHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWD--GDVVRWEFPGN 284 (303)
Q Consensus 226 atg----~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s~D--g~i~~Wd~~~~ 284 (303)
... ..+++|.++|.++.+.+..+... ..++..+.|++||+++-.+..+ +.|.++|.+.-
T Consensus 284 wvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred EeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 888 45689999999999887777532 2369999999999954444333 36999997643
|
... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-09 Score=103.87 Aligned_cols=186 Identities=16% Similarity=0.270 Sum_probs=133.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.++.=+|.-.+.++|+.||.|++|.-..++.+..+.. -...|+.+.|+. +|+.+..+..||.+.+|-.. .+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-----pk 2283 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-----PK 2283 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-----Cc
Confidence 678888888888999999999999999877766544332 237888889975 47788889999999999753 34
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEe---CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+....+.|..+.+.+.|-. ..+++++ .++.+.+||.-..... . .
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~------------------------s-------~ 2330 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN------------------------S-------L 2330 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc------------------------c-------e
Confidence 4445566777666655543 4677765 4789999996421100 0 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
+- +.|..-.+ ...|-|..++|++||-+|.|++||++.+++..++.. +. ...++++++..|.+
T Consensus 2331 v~--~~H~~gaT------~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2331 VH--TCHDGGAT------VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred ee--eecCCCce------EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccce
Confidence 10 11111111 123567889999999999999999999887766543 44 56789999999999
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
++|++..
T Consensus 2393 kIw~~s~ 2399 (2439)
T KOG1064|consen 2393 KIWRLSE 2399 (2439)
T ss_pred EEEEccc
Confidence 9999764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-07 Score=77.40 Aligned_cols=243 Identities=15% Similarity=0.234 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc-----
Q 022074 42 IFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN----- 115 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~----- 115 (303)
|.-|.|..|..+++++ ..|+.|.+|++.......++..-..++...+|+|+..+.|.+...+-.+.+|.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 5567888888776664 6788999999988877777877778999999988766788888889999999753100
Q ss_pred ------------CCCc---------------------------------------------cceee---------cccc-
Q 022074 116 ------------VKGK---------------------------------------------PAGVL---------MGHL- 128 (303)
Q Consensus 116 ------------~~~~---------------------------------------------~~~~~---------~~h~- 128 (303)
..++ ..... .=|.
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~ 210 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG 210 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence 0000 00000 0011
Q ss_pred cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc----c-----------cCccceeeeceeeeCCCCCccccC-C
Q 022074 129 EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC----N-----------LGFRSYEWDYRWMDYPPQARDLKH-P 192 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~-~ 192 (303)
-++..+.++|.+++|+.|+.|+.+|+-+.-.-+....+ . ..+.........+.++|..-.... .
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 24566778888889999999999988653221111000 0 000000000001111111000000 0
Q ss_pred CC----------CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe--CCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 193 CD----------QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 193 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
.. ..+..++.-.....-....-...||+|..+++|-. .-+.+.+||+.+.+.-..+ ....||....|
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~W 369 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEW 369 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEe
Confidence 00 00000000000000000111235889999999864 4578999999886654444 35569999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
+|..+.|+.....-.+.+|-+.+.+
T Consensus 370 dP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCce
Confidence 9999877777777789999987653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=86.35 Aligned_cols=172 Identities=21% Similarity=0.198 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCEEE-EeeCCC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE-EecCCCe--EEEEcCccc
Q 022074 41 GIFSLKFSTDGRELV-AGSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGSDDNL--CKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~-sgs~Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s~dg~--v~lWd~~~~ 114 (303)
...+..|+|||+.++ +.+.+| .|++||+.++.. .++..+........|+++ ++.++ +...+|. +.++|+..
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~- 325 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASG- 325 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCC-
Confidence 345789999999775 445555 599999988864 345555555567889765 55555 4445555 55555432
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC---cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ---AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~---~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
+. ...+..+.......+++|+|++++..+.++ .|.+||+......
T Consensus 326 ---g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------------- 373 (433)
T PRK04922 326 ---GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------------- 373 (433)
T ss_pred ---CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE----------------------------
Confidence 11 222222223344578999999987665433 5888887532110
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
.+.... ....|.|+|++++++..+. .+.|++++... .....+..+.+.+...+|||
T Consensus 374 -------~Lt~~~-------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 374 -------TLTPGS-------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -------ECCCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 000000 0013457889988777665 34688888854 44555666667788889987
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=94.76 Aligned_cols=215 Identities=20% Similarity=0.274 Sum_probs=134.5
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
-||+.+|..+.|+|+.. .+++++.|-.+..||+..-.... .+..-..+-..|+|+-.+++.+++ +....|++||.+.
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRK 189 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccC
Confidence 49999999999998654 78899999999999998765432 222222455788897677777654 4456899999874
Q ss_pred ccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
. ..+...+.+|...|..++|..- -..+.+.+.|++|+.||-.+..........-....|--+.+ |..
T Consensus 190 g---s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~---Pfg------ 257 (1081)
T KOG0309|consen 190 G---STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL---PFG------ 257 (1081)
T ss_pred C---CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc---ccC------
Confidence 3 3567788889999998887652 34689999999999999765432211110000000000000 000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCC------
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQP------ 265 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~------ 265 (303)
...++.. ..++..+..---+..-..|+..++ ..+.+|.+|.+.|.+.-|-..+.
T Consensus 258 ~g~~~mp-------------------~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 258 EGYCIMP-------------------MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred ceeEecc-------------------ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 0000000 001111111111222345555544 46889999999888777754322
Q ss_pred ----eEEEEeCCCCEEEeecC
Q 022074 266 ----MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 266 ----~las~s~Dg~i~~Wd~~ 282 (303)
+|+|-|-|..+++|.+.
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccceeEEEeecCCceEeeecc
Confidence 89999999999999875
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=81.03 Aligned_cols=166 Identities=16% Similarity=0.264 Sum_probs=105.1
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
.+..++|++ .-..|+++..|..|++||... .....+.. -...|++++|.|.+..-++.+--+.|.+|......
T Consensus 100 dlr~~aWhq-H~~~fava~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 100 DLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL 173 (445)
T ss_pred ceeeEeech-hhhhhhhhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence 567888964 455688999999999999653 11222221 23579999999865444444445789999765321
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECC
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV 240 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~ 240 (303)
... +.+ + +....-..+....||.. .+.+ .+.+||..+++++ .|..|.|||..
T Consensus 174 n~~------r~~----~----------~~s~~~~qvl~~pgh~p-Vtsm------qwn~dgt~l~tAS~gsssi~iWdpd 226 (445)
T KOG2139|consen 174 NAN------RNI----R----------MMSTHHLQVLQDPGHNP-VTSM------QWNEDGTILVTASFGSSSIMIWDPD 226 (445)
T ss_pred ccc------ccc----c----------cccccchhheeCCCCce-eeEE------EEcCCCCEEeecccCcceEEEEcCC
Confidence 100 000 0 00000001222334421 2222 2456788899987 67889999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++.++--..---+.+.-+.||||+.+|+++.-|++.++|+.
T Consensus 227 tg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 227 TGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred CCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehh
Confidence 98764333223356889999999999999999999999954
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=83.65 Aligned_cols=82 Identities=26% Similarity=0.419 Sum_probs=66.4
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
..++.+|.+.+.+++|. +...+|++|..|..|.+||+... ......+.+|.+.|..+..-+--..+.+++.|+.|-
T Consensus 190 i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~---~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 190 ITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGR---KGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred EEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCC---cceeeeeccchhhhhhhhhhhhheeeeeccCCCeEE
Confidence 34567899999999995 45678999999999999997522 223456789999998877666677899999999999
Q ss_pred EEEccc
Q 022074 154 LWDIRK 159 (303)
Q Consensus 154 lWdl~~ 159 (303)
+||+..
T Consensus 266 ~w~mn~ 271 (404)
T KOG1409|consen 266 VWNMNV 271 (404)
T ss_pred EEeccc
Confidence 999864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.6e-08 Score=82.61 Aligned_cols=210 Identities=19% Similarity=0.288 Sum_probs=127.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--e---EEEEeccc------------CCeEEEEEccC-CCcEEEEec
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--L---SLRILAHT------------SDVNTVCFGDE-SGHLIYSGS 101 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~---~~~~~~h~------------~~v~~l~~~~~-~~~~l~s~s 101 (303)
--|.++.|...|.++++|...|.|.+|+-.... . ...++.|. ..|+.+.|..+ ....|+-.+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 348899999999999999999999999765432 1 12244553 35788888543 345677788
Q ss_pred CCCeEEEEcCccccC---------------CCc-----------------------cceee-cccccCeEEEEeCCCCCE
Q 022074 102 DDNLCKVWDRRCLNV---------------KGK-----------------------PAGVL-MGHLEGITFIDSRGDGRY 142 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~---------------~~~-----------------------~~~~~-~~h~~~v~~~~~~~~~~~ 142 (303)
.|.++++|.++..+. .+. +.+.. ..|.--+.++++..|.+.
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999998642100 000 11111 235555778888887776
Q ss_pred EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC-
Q 022074 143 LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG- 221 (303)
Q Consensus 143 l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 221 (303)
++++ .|=.|.+|++......+.. .+. +.+.. ..+.....+..|+|.
T Consensus 187 ~lSa-DdLrINLWnl~i~D~sFnI-------------VDi------------------KP~nm-eeLteVItSaeFhp~~ 233 (460)
T COG5170 187 LLSA-DDLRINLWNLEIIDGSFNI-------------VDI------------------KPHNM-EELTEVITSAEFHPEM 233 (460)
T ss_pred eeec-cceeeeeccccccCCceEE-------------Eec------------------cCccH-HHHHHHHhhcccCHhH
Confidence 6665 6788999998653321110 000 00000 000001112223332
Q ss_pred CeEEEEEeCCCeEEEEECCCCe------EEEEe----------ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGE------QVAAL----------KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~------~~~~~----------~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...+.-.++.|.|++.|+++.. ++... ++-...|.++.|+++|+++++-+. -++++||+..
T Consensus 234 cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm 310 (460)
T COG5170 234 CNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM 310 (460)
T ss_pred cceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence 2344456678999999987432 11111 112357899999999999999875 6999999863
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=80.51 Aligned_cols=63 Identities=27% Similarity=0.491 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
++.++++|++||.+.+||.++... ...++.|+.+|+.+.|+|..+ .|+++++||.+..||..+
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 456788999999999999998754 445689999999999999764 799999999999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-06 Score=80.61 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=107.8
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC---CeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.++|...+. ...+..+...+....|+|+ ++.++.++.+ ..|++||+... . ...+..+...+....|+|
T Consensus 171 ~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g----~-~~~~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN-PQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATG----Q-REKVASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC-CEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCC----C-EEEeecCCCCccceEECC
Confidence 57788876544 3446666667888899764 6666655432 47999997522 1 122333444556678999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
+++.|+ +.+.++ .|.+||+...... .+..+. .....
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------------------~l~~~~------~~~~~ 282 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------------------RLTNGP------GIDTE 282 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE-----------------------------------ECCCCC------CCCCC
Confidence 998775 444444 4777776432100 000000 00113
Q ss_pred eeeeCCCeEEEEEeCC---CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPG 283 (303)
Q Consensus 216 ~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~ 283 (303)
+.|+++++.|+..+.. ..|+++|..+++. ..+..+...+....|+|++++|+.++.++ .|.+||+..
T Consensus 283 ~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 283 PSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 4567888887766542 2688889887664 34444556778899999999988888776 788888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-07 Score=86.83 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=126.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
++..++.|+--..+..+|+.+.++........++|.-++.+ ++.+++|...|+|.+=|.+ ..+++..+..|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N---nr~lf~G~t~G~V~LrD~~----s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN---NRNLFCGDTRGTVFLRDPN----SFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec---CcEEEeecccceEEeecCC----cCceeeeeecccc
Confidence 35567777766678888998887654444344467777763 5789999999999999876 4456778899999
Q ss_pred CeEEEEeCCCCCEEEEEeC---------CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 130 GITFIDSRGDGRYLISNGK---------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~---------D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
.+..++. .|++|+|+|. |.=|++||||.++......... .|
T Consensus 219 siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~------------~P---------------- 268 (1118)
T KOG1275|consen 219 SISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY------------GP---------------- 268 (1118)
T ss_pred ceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc------------Cc----------------
Confidence 9988765 6889999886 5667899999765432211100 00
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeE---EEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQ---VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~---~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
+ .++. .|.+ ...++..+..|...+.|..+ .+. +..+......+..+++|++++.||-+..+|.+
T Consensus 269 ---~----flrf--~Psl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 269 ---Q----FLRF--HPSL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ---h----hhhh--cccc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 0 1111 1211 24578889999999999432 222 22223333459999999999999999999999
Q ss_pred EEee
Q 022074 277 VRWE 280 (303)
Q Consensus 277 ~~Wd 280 (303)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-07 Score=80.24 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=118.0
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
-++|||+|+++|+.+.- .+.|=|..+-+.. ++..--+.|.-+.|..++-..+-....++.|.+|++... .--+.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp----ew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-QLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP----EWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-HHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc----eeEEE
Confidence 46899999999999877 4666666554421 112223567778886554445555678999999997521 12233
Q ss_pred ecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCc--ccccCccceeeeceeeeCCCCCccccC----CCCCc
Q 022074 124 LMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNA--SCNLGFRSYEWDYRWMDYPPQARDLKH----PCDQS 196 (303)
Q Consensus 124 ~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 196 (303)
...-.+++.++.++|+|+ .|.+...|-.|.+|.+...+..- -.+.+. +...+.++++.... .|.+.
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~-------kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV-------KGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc-------eeEEECCCCceeeeeecccHHHH
Confidence 445567889999999994 45677789999999875422100 000011 11122222221111 11111
Q ss_pred ceEE-------ecccce--eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCe
Q 022074 197 VATY-------KGHSVL--RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPM 266 (303)
Q Consensus 197 ~~~~-------~~~~~~--~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~ 266 (303)
+..+ -++-.. ...... .++|||.. +.+||.--.-++. ..|. -.+..++|||.+++
T Consensus 160 v~i~~c~~W~ll~~f~~dT~Dltgi----eWsPdg~~---------laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGI----EWSPDGNW---------LAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQF 224 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCc----eECCCCcE---------EEEecchhhheee--eeeeccceeEEEeccccce
Confidence 0000 000000 011112 24566655 5678754332332 2232 46889999999999
Q ss_pred EEEEeCCCCEEE
Q 022074 267 LVSSSWDGDVVR 278 (303)
Q Consensus 267 las~s~Dg~i~~ 278 (303)
|+.|+.|+.+++
T Consensus 225 lavGsyD~~lrv 236 (447)
T KOG4497|consen 225 LAVGSYDQMLRV 236 (447)
T ss_pred EEeeccchhhhh
Confidence 999999998875
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=72.99 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=121.4
Q ss_pred CCCEEEEeeCCCeEEEEECCCCce-EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
.-.+|+.|+.-|...+|...+.+. ...-..|..+|+-+.-..+..-.+..++.|.++++.++.... .+ ...|.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-~~-----~~~h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-NK-----FAVHN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-cc-----ceeec
Confidence 345799999999999999986543 333344555555442212233356678999999998865221 11 12244
Q ss_pred cC--eEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccce
Q 022074 129 EG--ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 206 (303)
Q Consensus 129 ~~--v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (303)
.. +..+++++++.++++.|.-..|.+|.+.....-- ... .++...
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-----~~~---------------~~a~t~------------- 203 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-----ENI---------------YEAPTS------------- 203 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-----eee---------------EecccC-------------
Confidence 43 7788999999999999999999999875421100 000 000000
Q ss_pred eeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EE----EeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEe
Q 022074 207 RTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VA----ALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRW 279 (303)
Q Consensus 207 ~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~----~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~W 279 (303)
...|...|+.....+|++.+||++.|||++.... +. +-..|.+.+..|.|+|-|. +|+-.-.-+.+.+-
T Consensus 204 ----D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~ 279 (344)
T KOG4532|consen 204 ----DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVV 279 (344)
T ss_pred ----CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEE
Confidence 0112334566677899999999999999986532 21 2236889999999999765 44444445666777
Q ss_pred ecC
Q 022074 280 EFP 282 (303)
Q Consensus 280 d~~ 282 (303)
|..
T Consensus 280 D~R 282 (344)
T KOG4532|consen 280 DTR 282 (344)
T ss_pred Ecc
Confidence 654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.6e-06 Score=84.12 Aligned_cols=222 Identities=10% Similarity=0.092 Sum_probs=129.8
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc-----------------cCCeEEEEEccCCCcEEEEecCC
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-----------------TSDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~~l~s~s~d 103 (303)
-..|+++++++.|+++. ..+.|+++|..++... ++.+- -..-..+++.+.++.++++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 57889999888766654 4567999998876532 22110 01234678876567788888889
Q ss_pred CeEEEEcCccccCC-----Cccceeeccc------ccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 104 NLCKVWDRRCLNVK-----GKPAGVLMGH------LEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 104 g~v~lWd~~~~~~~-----~~~~~~~~~h------~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+.|++||....... +. .....++ -.....+++++++. ++++.+.++.|++||+......... .+..
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~-gg~~ 782 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA-GGDP 782 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCc-cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE-eccc
Confidence 99999996421100 00 0000111 12345688899987 5567777899999998642110000 0000
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-- 249 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-- 249 (303)
..+.... ..... ++... ...........++++|.++++...+++|++||..++.......
T Consensus 783 ---------~~~~~l~--~fG~~------dG~g~-~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 783 ---------TFSDNLF--KFGDH------DGVGS-EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred ---------ccCcccc--cccCC------CCchh-hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence 0000000 00000 00000 0000001122356788888888999999999998876542221
Q ss_pred -----------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 -----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 -----------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.-.....++++++|+++++-+.++.|++||+...
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 11235789999999999999999999999998654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.3e-05 Score=69.29 Aligned_cols=240 Identities=14% Similarity=0.191 Sum_probs=129.5
Q ss_pred EEEEEcCCCCEEEEeeC----CCeEEEEECCCC--ceEE--EEecccCCeEEEEEccCCCcEEEEec-CCCeEEEEcCcc
Q 022074 43 FSLKFSTDGRELVAGSS----DDCIYVYDLEAN--KLSL--RILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRC 113 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~----Dg~v~lwd~~~~--~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~s-~dg~v~lWd~~~ 113 (303)
.-++++|++++|++... ++.|..|++... ++.. +........+.+++.+ ++++|+++. .+|+|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccC
Confidence 44778999999999876 568989988764 3322 2222334556778865 466766665 589999998753
Q ss_pred ccCCCccceee--c--------ccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCc-cceeeeceeee
Q 022074 114 LNVKGKPAGVL--M--------GHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGF-RSYEWDYRWMD 181 (303)
Q Consensus 114 ~~~~~~~~~~~--~--------~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~-~~~~~~~~~~~ 181 (303)
..........+ . .-....+++.++|++++++... ....|.+|++............. .......+.+.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 11111111111 0 1123467889999999876654 45688889886533111000000 00001123344
Q ss_pred CCCCCccccCCC--CCcceEEecc--c-ceeeeEE------------EeeeeeeeCCCeEEEEEe-CCCeEEEEECC--C
Q 022074 182 YPPQARDLKHPC--DQSVATYKGH--S-VLRTLIR------------CHFSPVYSTGQKYIYTGS-HDSCVYVYDLV--S 241 (303)
Q Consensus 182 ~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~~------------~~~~~~~s~~~~~latg~-~dg~i~iwd~~--~ 241 (303)
+.++.+.+-..+ ...+..+.-. . ....... ......++||+++|.+.. .+..|.+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 444433321111 1122222111 0 0000000 011234789999887765 67889999983 3
Q ss_pred Ce--EEEEeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecCC
Q 022074 242 GE--QVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 283 (303)
Q Consensus 242 ~~--~~~~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~ 283 (303)
++ .+..+.........++++|+|++|+.+. .++.|.+|++..
T Consensus 279 g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 279 GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 43 3444444445589999999999888776 567899998753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-05 Score=73.31 Aligned_cols=192 Identities=10% Similarity=0.055 Sum_probs=107.6
Q ss_pred ceEEEEEcCCCCE-EEEeeCC---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC--CeEEEEcCccc
Q 022074 41 GIFSLKFSTDGRE-LVAGSSD---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~-l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~lWd~~~~ 114 (303)
....-.|+|||+. ++..+.+ ..|+++|+.+++.. .+....+......|+|+...++++.+.+ ..|.++|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678999999985 5544443 46899999888654 3434445566678987655566666555 45666675421
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
....+..+........|+|||+.|+-.+ ..+.-.|| |+..... +.+
T Consensus 268 -----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~------------------------~rl-- 316 (419)
T PRK04043 268 -----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV------------------------EQV-- 316 (419)
T ss_pred -----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe------------------------EeC--
Confidence 1222333332223446899998765444 44443444 3321100 000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---------CeEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---------g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
+..+. ..+.+||+|++++..... ..|++.|+.+++. ..+... .......|||
T Consensus 317 -------t~~g~----------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP 377 (419)
T PRK04043 317 -------VFHGK----------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS 377 (419)
T ss_pred -------ccCCC----------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC
Confidence 00010 012467888877766543 3788989888764 333322 2334688999
Q ss_pred CCCeEEEEeC-CCC--EEEeecCC
Q 022074 263 SQPMLVSSSW-DGD--VVRWEFPG 283 (303)
Q Consensus 263 ~~~~las~s~-Dg~--i~~Wd~~~ 283 (303)
||++|+-.+. .+. |.+.++.+
T Consensus 378 DG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 378 DGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCEEEEEEccCCcEEEEEEecCC
Confidence 9996554443 344 34445444
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.2e-06 Score=69.01 Aligned_cols=187 Identities=18% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCeEEEEECCCCceEE---EEecccCCeEEEEEcc--CCCc-EEEEecCCCeEEEEcCccccCCCccceeecccccC---
Q 022074 60 DDCIYVYDLEANKLSL---RILAHTSDVNTVCFGD--ESGH-LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG--- 130 (303)
Q Consensus 60 Dg~v~lwd~~~~~~~~---~~~~h~~~v~~l~~~~--~~~~-~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~--- 130 (303)
.|.+.+|++...+... .....+..++.+.|.. .+++ .++-+..+|.|.++...... .......+.+..-.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccchhhhhhee
Confidence 4678888887655332 1222335567777732 2344 56677888999998643110 00001111111111
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 131 v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
-.++++++.+..++++-.+|.+.+-+-.... ...++.+++|.+.....
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~--------------------------------le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV--------------------------------LEKVQTWKVHEFEAWTA 171 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee--------------------------------eeecccccccceeeeee
Confidence 2356777778788888777777743322110 11234555555433222
Q ss_pred EEeeeeeeeCCCeEEEEEeCCCeEEEEECC-CCeEEEE-eecCCCCeEEEEECCC-CCeEEEEeCCCCEEEeecCCC
Q 022074 211 RCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVAA-LKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 211 ~~~~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~~~~-~~~h~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|+- .+..++.+||.|+.+..||++ .++.+.. .+.|...|.++.=||- ..+++||+.|-.|++||...+
T Consensus 172 --~f~~---~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 172 --KFSD---KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred --eccc---CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 2221 133689999999999999998 3444443 4678889999998875 558999999999999998754
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00016 Score=64.36 Aligned_cols=256 Identities=12% Similarity=0.085 Sum_probs=135.7
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC----------CCeEEEEECCCCceE
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----------DDCIYVYDLEANKLS 74 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~----------Dg~v~lwd~~~~~~~ 74 (303)
+-+.|.+...|..-+.|.+.=++. ..+..+.|..-.. + +||||+.++++.. +..|.+||+.+.+..
T Consensus 15 v~V~d~~~~~~~~~v~ViD~~~~~-v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 15 VYVLDPGHFAATTQVYTIDGEAGR-VLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred EEEECCcccccCceEEEEECCCCE-EEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 556666766666777777764433 2233445544443 4 9999999888766 778999999999887
Q ss_pred EEEeccc-------CCeEEEEEccCCCcEEEEec-C-CCeEEEEcCccccCCCccceeecccccCeEE--------EEeC
Q 022074 75 LRILAHT-------SDVNTVCFGDESGHLIYSGS-D-DNLCKVWDRRCLNVKGKPAGVLMGHLEGITF--------IDSR 137 (303)
Q Consensus 75 ~~~~~h~-------~~v~~l~~~~~~~~~l~s~s-~-dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~--------~~~~ 137 (303)
.++.--. .....+++++ ++++++... . +..|.+.|+.... ......- .++... ...+
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~k----vv~ei~v-p~~~~vy~t~e~~~~~~~ 164 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKA----FVRMMDV-PDCYHIFPTANDTFFMHC 164 (352)
T ss_pred eEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCc----EEEEEeC-CCCcEEEEecCCccEEEe
Confidence 6655311 1223566765 577777665 3 6899999976322 2221111 111111 1122
Q ss_pred CCCCEE-EEEeCCCcEE-----EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEec--ccc--ee
Q 022074 138 GDGRYL-ISNGKDQAIK-----LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG--HSV--LR 207 (303)
Q Consensus 138 ~~~~~l-~s~~~D~~v~-----lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~ 207 (303)
.||.++ ++...+|... +++-... ..+ .+. . -.+.+.+.+.......+..++- ... ..
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~-~v~-----~rP-~------~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDE-YLI-----NHP-A------YSNKSGRLVWPTYTGKIFQIDLSSGDAKFLP 231 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCcc-ccc-----cCC-c------eEcCCCcEEEEecCCeEEEEecCCCcceecc
Confidence 333332 2233333322 1111000 000 000 0 0011222222222222222220 000 00
Q ss_pred --eeEEE-----ee-----e-eeeeCCCeEEEEEe----------CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 208 --TLIRC-----HF-----S-PVYSTGQKYIYTGS----------HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 208 --~~~~~-----~~-----~-~~~s~~~~~latg~----------~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
..... .+ . ..++++++.+.... ..+.|.++|..+++.+..+.. ..+++.+++|||+
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCC
Confidence 00000 00 0 23667777766632 235899999999999888763 3589999999999
Q ss_pred C-eEEEEe-CCCCEEEeecCCC
Q 022074 265 P-MLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 265 ~-~las~s-~Dg~i~~Wd~~~~ 284 (303)
+ .|.+.. .++.+.+.|.+..
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCC
Confidence 9 777666 5788999997643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=75.98 Aligned_cols=165 Identities=17% Similarity=0.244 Sum_probs=96.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE---ecccCCeEEEEEccCCCcEE--EEecCCCeEEEEcCcc
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLI--YSGSDDNLCKVWDRRC 113 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l--~s~s~dg~v~lWd~~~ 113 (303)
..+...+..++.++.+|++..+....+++........++ ..-...-+++.+...+...+ ..++....+.+|...
T Consensus 62 ~~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~- 140 (390)
T KOG3914|consen 62 SLAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD- 140 (390)
T ss_pred hccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc-
Confidence 345666778888999998887777667766544321111 11112223444422222222 122333344444422
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
........||..-+..+++++|++.++|+.+|..||+-.......+.+.
T Consensus 141 ----~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------- 189 (390)
T KOG3914|consen 141 ----SGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--------------------------- 189 (390)
T ss_pred ----ccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------
Confidence 1234456799999999999999999999999999999754321100000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+-||......+. . .+++.|++||.|+++++||+++|+.+.++
T Consensus 190 ------clGH~eFVS~is------l-~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 190 ------CLGHKEFVSTIS------L-TDNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ------ccccHhheeeee------e-ccCceeeecCCCCcEEEEecccCCccccc
Confidence 112221111111 1 23566899999999999999999876554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-05 Score=72.68 Aligned_cols=174 Identities=13% Similarity=0.105 Sum_probs=100.8
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-C--CeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-D--NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-d--g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.++|.+.+.. ..+..+...+....|+|+ ++.|+..+. + ..|.+||+... . ...+......+....|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g----~-~~~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTG----R-REQITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCC----C-EEEccCCCCCcCCeEECC
Confidence 477778876543 445567778889999865 666655443 2 46888887532 1 112222223344577999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
+|+.|+ +.+.++ .|.+||+...... .+..+.. ....
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------------------~lt~~~~------~~~~ 291 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------------------RVTNHPA------IDTE 291 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE-----------------------------------EcccCCC------CcCC
Confidence 998876 555555 4666676431100 0000000 0123
Q ss_pred eeeeCCCeEEEEEeC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-C--CEEEeecCCC
Q 022074 216 PVYSTGQKYIYTGSH-D--SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-G--DVVRWEFPGN 284 (303)
Q Consensus 216 ~~~s~~~~~latg~~-d--g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-g--~i~~Wd~~~~ 284 (303)
+.|+||++.++..+. + ..|+++|+.+++.. .+..........+||||++.|+..+.+ + .|.+||+.+.
T Consensus 292 ~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 292 PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 557888887766553 2 36888888777642 222122234567899999988776643 3 4777887653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-05 Score=65.39 Aligned_cols=192 Identities=17% Similarity=0.137 Sum_probs=106.9
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-c------cCCeEEEEEccCC-----CcEEEEecCCCeEEEEc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-H------TSDVNTVCFGDES-----GHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h------~~~v~~l~~~~~~-----~~~l~s~s~dg~v~lWd 110 (303)
..++||||+..||.+...|+|++||+....+. .+.. + ...|..+.|.... ...|+.-..+|.++-|=
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 56899999999999999999999999765432 2221 1 2345556663221 22456667777777554
Q ss_pred Ccccc-CCCcccee--ecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 111 RRCLN-VKGKPAGV--LMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 111 ~~~~~-~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+.... +.-+.... +.. +..+|.++.+++.-++|+.||.... ......+
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s~a---------------------- 177 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMSKA---------------------- 177 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCccccc----------------------
Confidence 32111 11111112 222 3568999999998888888775432 0000000
Q ss_pred ccccCCCCC-cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC------eEEEEECCCCeEEEEeecCCCCeEEEE
Q 022074 187 RDLKHPCDQ-SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS------CVYVYDLVSGEQVAALKYHTSPVRDCS 259 (303)
Q Consensus 187 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg------~i~iwd~~~~~~~~~~~~h~~~I~~v~ 259 (303)
..+.- ....+++. |..+. ++..+|+ +-.+|.+.+.+.-.....-.+.|..|.
T Consensus 178 ----~~~GLtaWRiL~~~----------------Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS 236 (282)
T PF15492_consen 178 ----SSCGLTAWRILSDS----------------PYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS 236 (282)
T ss_pred ----cccCceEEEEcCCC----------------CcEEE-ccccCccccccccccceeeccceeeeeccccCCCceEEEE
Confidence 00000 00011111 11111 1122221 123444333332222223457899999
Q ss_pred ECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 260 WHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 260 ~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.||||..||+...+|.|.+|+++.-
T Consensus 237 lSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 237 LSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ECCCCCEEEEEEcCCeEEEEecCcc
Confidence 9999999999999999999999864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-06 Score=76.81 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCEEEE-eeCCCe--EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe--EEEEcCccccC
Q 022074 42 IFSLKFSTDGRELVA-GSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL--CKVWDRRCLNV 116 (303)
Q Consensus 42 v~~l~~s~~g~~l~s-gs~Dg~--v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~--v~lWd~~~~~~ 116 (303)
.....|+|||+.|+. .+.+|. |+++|+.+++.. ++..+........|+|+...++++...++. |.++|+..
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--- 339 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--- 339 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC---
Confidence 346799999998765 456664 778898887643 455555556678897654444455555554 55555532
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEE--EcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLW--DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lW--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
+. ...+..........+++|+|++|+..+. ++...|| |+.....
T Consensus 340 -g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~------------------------------- 386 (448)
T PRK04792 340 -GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM------------------------------- 386 (448)
T ss_pred -CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------------------------------
Confidence 11 1222111122234578999998876554 4545555 3321100
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp 262 (303)
..+.... ....|.++|+++.++.... ++ .+++++. +|.....+..+.+.+...+|||
T Consensus 387 ----~~lt~~~-------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 387 ----QVLTSTR-------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ----EEccCCC-------CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 0000000 0013457888888776553 33 3778887 4555666666667788889987
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=85.21 Aligned_cols=203 Identities=18% Similarity=0.289 Sum_probs=126.5
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
..||.-.|.++.--.+.+-+++++.|.+|++|.++... .+.++..|+..|..+.|.. +...+ ++.||-++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i--~ScD~giH 807 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSI--ASCDGGIH 807 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-cccee--eeccCcce
Confidence 36999888888777788889999999999999886531 3345678999999999953 33444 45688999
Q ss_pred EEcCccccCCCcccee-ec----ccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 108 VWDRRCLNVKGKPAGV-LM----GHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~-~~----~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
+||.. .+++... +. +....|.++. +-+...+. -++...+|+++|-|.. +|...+.
T Consensus 808 lWDPF----igr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc-------------e~~~E~k- 868 (1034)
T KOG4190|consen 808 LWDPF----IGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC-------------EWTCELK- 868 (1034)
T ss_pred eeccc----ccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc-------------cceeeEE-
Confidence 99953 2222211 11 1122344442 22344444 3478999999998742 2221110
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
+....+- ....++. ...+.|.+++.|-..|+|.+.|.++|+.+.....-+.....++ .
T Consensus 869 ---------------Vcna~~P---na~~R~i---aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 869 ---------------VCNAPGP---NALTRAI---AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-A 926 (1034)
T ss_pred ---------------eccCCCC---chheeEE---EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-C
Confidence 0000000 0011111 1235678899999999999999999998776654333333333 2
Q ss_pred CCCCeEEEEeCCCCEEE-eec
Q 022074 262 PSQPMLVSSSWDGDVVR-WEF 281 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~-Wd~ 281 (303)
|..+.|+....|.++.+ |-.
T Consensus 927 psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred chhHHHHhhcccceeEeeehh
Confidence 55667777777888877 753
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=55.47 Aligned_cols=32 Identities=47% Similarity=0.596 Sum_probs=31.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 67 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd 67 (303)
.||+.+|.+|+|+|+++.+++|+.|++|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 68999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.4e-06 Score=75.18 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=99.7
Q ss_pred ceEEEEEcCCCCEEEEeeC-CC----eEEEEECCCC--ceEEEEecc-cCCeEEEEEccCCCcE-EEEecCCCeEEEEcC
Q 022074 41 GIFSLKFSTDGRELVAGSS-DD----CIYVYDLEAN--KLSLRILAH-TSDVNTVCFGDESGHL-IYSGSDDNLCKVWDR 111 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~-Dg----~v~lwd~~~~--~~~~~~~~h-~~~v~~l~~~~~~~~~-l~s~s~dg~v~lWd~ 111 (303)
.....+|||||+.|+..+. +| .+.+|++..+ ....++... .......+|+|+ ++. +++...+|...+|..
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-G~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-GTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC-CCEEEEEECCCCCceEEEE
Confidence 3456789999998886553 23 2344677653 122233332 233456789765 554 445556776666643
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC---CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D---~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
... ..+.....+..+...+....++|+|+.|+..+.+ ..|.+||+......
T Consensus 311 ~~~-~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~------------------------- 364 (428)
T PRK01029 311 QID-PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY------------------------- 364 (428)
T ss_pred ECc-ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-------------------------
Confidence 211 0111223343444456677899999988766543 35777776432110
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
.+.... .....+.++||++.|+... .+..|+++|+..++..... ...+.+...+|||-.
T Consensus 365 ----------~Lt~~~------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 365 ----------QLTTSP------ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred ----------EccCCC------CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 000000 0012355788888776533 2467999999877653333 344567788888753
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-05 Score=67.71 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=111.1
Q ss_pred EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEE
Q 022074 55 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI 134 (303)
Q Consensus 55 ~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~ 134 (303)
++-..+|.|.+.|..+.+...++......-..+.+++ ++++++.++.||.|.++|+.. .+.+..+.. ...-..+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~----~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLAT----GKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTS----SSEEEEEE--SSEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCc----ccEEEEEec-CCCcceE
Confidence 4556789999999999988877765433323456754 577888888999999999863 333444322 2335678
Q ss_pred EeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEe
Q 022074 135 DSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213 (303)
Q Consensus 135 ~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (303)
+++++|+++++++ ..+.+.++|.+.++......... .+... ... + ..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~-----------~~~~~-----~~~------------R-v~--- 131 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG-----------MPVDG-----PES------------R-VA--- 131 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E-----------E-TTT-----S----------------EE---
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeeccccc-----------ccccc-----cCC------------C-ce---
Confidence 8999999987665 68999999987644322111000 00000 000 0 00
Q ss_pred eeeeeeCCCe-EEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCCC
Q 022074 214 FSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 214 ~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~~ 284 (303)
....++... ++++--+.+.|.+-|....+.+. ....-.....+..|+|+++++ +++-....+-++|.+..
T Consensus 132 -aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 132 -AIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp -EEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred -eEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 011234445 44555556899999987654332 222344578899999999975 44566778888886643
|
... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00063 Score=59.10 Aligned_cols=252 Identities=14% Similarity=0.153 Sum_probs=138.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC---CeEEEEECCC--CceEEE--EecccCCeEEEEEccCCCcEEEEecC-CCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEA--NKLSLR--ILAHTSDVNTVCFGDESGHLIYSGSD-DNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~--~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~ 107 (303)
-.+.....=|+|++++++|.++-.+ |.|--|..+. |.+... ......+-+.++.. ++++.++++.. .|.|.
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEE
Confidence 3455567789999999999998654 6677776654 554321 11122334777884 56778888864 67999
Q ss_pred EEcCccccCCCccceeecccccC----------eEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeee
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEG----------ITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWD 176 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~ 176 (303)
++.++.......++. +..|.+. +.+..+.|+++++++.. .--.|.+|++............. .-..-
T Consensus 115 v~p~~~dG~l~~~v~-~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~G 192 (346)
T COG2706 115 VYPLQADGSLQPVVQ-VVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAG 192 (346)
T ss_pred EEEcccCCcccccee-eeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCC
Confidence 998753211111211 1224333 78888999999988766 34678899987433222111111 11111
Q ss_pred ceeeeCCCCCccccCCC--CCcceEE--ecc-cceeeeEE------------EeeeeeeeCCCeEEEEEe-CCCeEEEEE
Q 022074 177 YRWMDYPPQARDLKHPC--DQSVATY--KGH-SVLRTLIR------------CHFSPVYSTGQKYIYTGS-HDSCVYVYD 238 (303)
Q Consensus 177 ~~~~~~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~------------~~~~~~~s~~~~~latg~-~dg~i~iwd 238 (303)
.+.+.+.|+.+..-..+ ...+..+ +.. .....+-. .......+++|++|.+.. ....|.++.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 23334444333211100 1111111 110 00000000 001122578999998874 334788887
Q ss_pred CCC--CeE--EEEeecCCCCeEEEEECCCCCeEEEEeCC-CCEEEeecCCCCccCCC
Q 022074 239 LVS--GEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 239 ~~~--~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~D-g~i~~Wd~~~~~~~~~~ 290 (303)
+.. +++ +.....+.....+..|+|++++|+.+.+| .++.++.....-++...
T Consensus 273 V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 273 VDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 653 332 22223344457899999999998888875 57889987655444433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-07 Score=78.09 Aligned_cols=124 Identities=19% Similarity=0.271 Sum_probs=95.5
Q ss_pred CCccc------ceEEEEEcCCCCEEEEeeCCCeEEEEECCCC----ceEEEEecccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 36 GGYSF------GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 36 ~~~~~------~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
+||.+ -|+++.|...++.+..|...|.|...|++.+ .......-|...|+++....-+...|.+.+.+|+
T Consensus 243 tg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 243 TGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred cccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCc
Confidence 56654 4777888888999999999999999999876 3344556788999999775435678888999999
Q ss_pred EEEEcCccccCCCccceeecccccCeE--EEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGIT--FIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
|++||.|... .+.-+..+.||...-. -+.+.++...++++|.|-..|||.++..
T Consensus 323 ikLyD~R~~K-~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 323 IKLYDLRATK-CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred eeEeeehhhh-cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 9999998432 2234567888876433 3345677778999999999999998853
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.2e-07 Score=82.87 Aligned_cols=203 Identities=24% Similarity=0.373 Sum_probs=133.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC--CeEEEEEccC--CCcEEEEecCCCeEEEEcCcccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS--DVNTVCFGDE--SGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~--~v~~l~~~~~--~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+++.+++.+|.|+-++.++.-| +.+.|+...-...++..|.. .|-.+.|++. .+..+++-+.. .-.+|.+....
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS 102 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCC
Confidence 4578899999999999999888 67788876544444555543 5677788642 34456555544 44578864211
Q ss_pred CCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.....-.+.||..+++.+.|.+.. ..+++++.|..+-.||+|..... .+.+...
T Consensus 103 -~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p--------~ys~~~w---------------- 157 (1081)
T KOG0309|consen 103 -SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP--------FYSTSSW---------------- 157 (1081)
T ss_pred -ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc--------eeeeecc----------------
Confidence 112223456889999999998754 46899999999999999864321 1111100
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEECCCC-CeEEEEeC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-QVAALKYHTSPVRDCSWHPSQ-PMLVSSSW 272 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-~~~~~~~h~~~I~~v~~sp~~-~~las~s~ 272 (303)
... ...++ ++.....+.+.+..+.|++||.+.|. .+..+++|...|+.++|+.-. ..+.+.+.
T Consensus 158 ------~s~---asqVk------wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 158 ------RSA---ASQVK------WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred ------ccc---Cceee------ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence 000 00011 11111224445567789999998774 588899999999999997643 46888999
Q ss_pred CCCEEEeecCCC
Q 022074 273 DGDVVRWEFPGN 284 (303)
Q Consensus 273 Dg~i~~Wd~~~~ 284 (303)
|++++.|+-...
T Consensus 223 d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 223 DGTVKFWDYSKS 234 (1081)
T ss_pred CCceeeeccccc
Confidence 999999997543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-06 Score=75.50 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=120.8
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-------------------------------C----
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-------------------------------G---- 118 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-------------------------------~---- 118 (303)
..++..|.+.|+.|.|+. .++.++|++.|..|.+||.-..... +
T Consensus 135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 346778999999999974 5889999999999999985211000 0
Q ss_pred ---------ccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcc--cccCccceeeeceeeeCCCCC
Q 022074 119 ---------KPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNAS--CNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 119 ---------~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.....+..|.+.|..++.-|+. ..|+|+|.|+.++-+|+|...+... |...........-.+...|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 0012234477778777777755 4488999999999999886533222 211111100000011111111
Q ss_pred c-cccCC-CCCcceE-----------------EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC--C---
Q 022074 187 R-DLKHP-CDQSVAT-----------------YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS--G--- 242 (303)
Q Consensus 187 ~-~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~--~--- 242 (303)
. .+... .++.... +-.+.....-.......+|+.++..|.+...|-.|+++...- |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 1 11111 1111111 111111111111122346887777788888888999995432 2
Q ss_pred -------eEEEE-eecCCC--CeEEEE-ECCCCCeEEEEeCCCCEEEeecCC
Q 022074 243 -------EQVAA-LKYHTS--PVRDCS-WHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 243 -------~~~~~-~~~h~~--~I~~v~-~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..+.. +++|.. .|..+- |-|...+++|||+-|.|-+|+-.+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 22333 788864 466665 568889999999999999999654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.6e-05 Score=67.30 Aligned_cols=196 Identities=13% Similarity=0.214 Sum_probs=117.5
Q ss_pred cccceEEEEEcCCCC--EEEEe-----eCCCeEEEEECCCCceE-----EEEecccCCeEEEEEccCCCcEEEEecC---
Q 022074 38 YSFGIFSLKFSTDGR--ELVAG-----SSDDCIYVYDLEANKLS-----LRILAHTSDVNTVCFGDESGHLIYSGSD--- 102 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~--~l~sg-----s~Dg~v~lwd~~~~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~s~--- 102 (303)
|..+|....+||.+. .+++- |.=+.||||.......- ..+... .=..+.|++...-+|+-++.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka--dkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA--DKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc--ceeEEEeccCCceEEEEEEEeec
Confidence 456788888887533 44442 34447999977632211 111111 12244565433223332221
Q ss_pred --------CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccc
Q 022074 103 --------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 103 --------dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
+.++++.++. +.....-....++|.++.|+++++.|+.+. .=.++-|+|++....
T Consensus 242 ktn~SYYGEq~Lyll~t~-----g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---------- 306 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ-----GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---------- 306 (566)
T ss_pred CCCccccccceEEEEEec-----CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe----------
Confidence 2355665542 111112222467899999999998886544 346778888863210
Q ss_pred eeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEEEEee
Q 022074 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~ 249 (303)
.+++...+ ...-|+|.|.+++.+| -.|.+-|||..+.+++..++
T Consensus 307 -------~df~egpR--------------------------N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~ 353 (566)
T KOG2315|consen 307 -------FDFPEGPR--------------------------NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK 353 (566)
T ss_pred -------EeCCCCCc--------------------------cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc
Confidence 01111100 0122677788888766 57889999999998888887
Q ss_pred cCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGNG 285 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~ 285 (303)
.- .-+-++|+|||++++|+.. |+.+++|+..+..
T Consensus 354 a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 354 AA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 54 4577899999999988876 6889999987653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.5e-05 Score=74.44 Aligned_cols=223 Identities=10% Similarity=0.121 Sum_probs=129.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---------------EEEEecccCCeEEEEEccCCCcEEEEecCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDN 104 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---------------~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg 104 (303)
....|++|+.+..++++|+.||.+++..+.+... -.++.+|++.|..+.|+ ++.+.|-|...+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCCc
Confidence 4588999999999999999999999998765431 12467899999999996 5567788889999
Q ss_pred eEEEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC
Q 022074 105 LCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 105 ~v~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (303)
.|.+|=+.- +.-.... .....-|.+++|..+|..+.....||.|.+=.+..-. +....+ .... ...+.+
T Consensus 94 lIiVWmlyk----gsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeL--kg~~--l~hv~w 164 (1189)
T KOG2041|consen 94 LIIVWMLYK----GSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKEL--KGQL--LAHVLW 164 (1189)
T ss_pred eEEEEeeec----ccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhc--chhe--ccceee
Confidence 999997631 1111111 1123447788898899888877777776553322100 000000 0000 000111
Q ss_pred CCCCccccCCC-------------------CCcceEEecc-c-ceeeeEEEeee--e--eeeCCCeEEEEEeCCCeEEEE
Q 022074 183 PPQARDLKHPC-------------------DQSVATYKGH-S-VLRTLIRCHFS--P--VYSTGQKYIYTGSHDSCVYVY 237 (303)
Q Consensus 183 ~~~~~~~~~~~-------------------~~~~~~~~~~-~-~~~~~~~~~~~--~--~~s~~~~~latg~~dg~i~iw 237 (303)
+++.+.+.... ..+....+|. . ....+...++. + ...|+...||.+-..|.+.|.
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 11111100000 0000000000 0 00011111111 1 124688899999999999988
Q ss_pred ECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 238 DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 238 d~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
.-.+...-..+. ....|....|+|+|.+||.++.|
T Consensus 245 R~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 245 RSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 765544322333 22678999999999999998865
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=65.50 Aligned_cols=187 Identities=17% Similarity=0.231 Sum_probs=121.5
Q ss_pred cCCCCEEEEeeCCCeEEEEECCCCceEEEEec------cc--CCe---EEEE-EccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 48 STDGRELVAGSSDDCIYVYDLEANKLSLRILA------HT--SDV---NTVC-FGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 48 s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~------h~--~~v---~~l~-~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
+.||++++- +.-|.|.+||..+..+...-.+ .+ ..+ .-+. |+..++++++..|. |.+.+.+.-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~--- 349 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW--- 349 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC---
Confidence 346877664 4667899999988765432111 01 111 1111 44456788887774 566665421
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCC-cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.+ -..-.+|...|....+..+++-++.|..|+ .+-++|.+.....
T Consensus 350 -~~--~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------------------------------- 395 (668)
T COG4946 350 -DG--YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------------------------------- 395 (668)
T ss_pred -CC--eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-------------------------------
Confidence 11 112346777898888888888899999999 9999997642210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.+.+. +.-.+....+++|++++.+.....|.+.|+++|+....=+.-.+-|++.+|||+++++|-+=-+|
T Consensus 396 ----r~e~~------lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 396 ----RIEKD------LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred ----EeeCC------ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc
Confidence 00000 00011223467899999999999999999999985322234457899999999999999776654
Q ss_pred ----CEEEeecCC
Q 022074 275 ----DVVRWEFPG 283 (303)
Q Consensus 275 ----~i~~Wd~~~ 283 (303)
.|+++|..+
T Consensus 466 y~tq~Iklydm~~ 478 (668)
T COG4946 466 YYTQSIKLYDMDG 478 (668)
T ss_pred eeeeeEEEEecCC
Confidence 678888765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.2e-06 Score=69.99 Aligned_cols=93 Identities=23% Similarity=0.401 Sum_probs=70.9
Q ss_pred EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CC
Q 022074 63 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 141 (303)
Q Consensus 63 v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 141 (303)
.+.|+++..+...........|.+++-+|...+++++|+.||.+-+||.|.. ..+...+..|...++-+.|+|. +.
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~eV~FHpk~p~ 237 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWEVHFHPKNPE 237 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhheeccCCCch
Confidence 4556555443322222233458999988877889999999999999998843 4566778889999999999884 56
Q ss_pred EEEEEeCCCcEEEEEcc
Q 022074 142 YLISNGKDQAIKLWDIR 158 (303)
Q Consensus 142 ~l~s~~~D~~v~lWdl~ 158 (303)
.|++++.||.+--||-.
T Consensus 238 ~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAS 254 (319)
T ss_pred heeEecCCCcEEEEcCC
Confidence 79999999999999965
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=78.06 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=110.9
Q ss_pred EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-Cc--cceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-GK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 76 ~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.+.+|...|..++.- ++.+-|+++++|++|++|.++..... +. ..-+++.|..+|..+.|-.+-++++++ |+.+
T Consensus 730 nf~GH~~~iRai~Ai-dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAI-DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred cccCcHHHhHHHHhc-ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 456788888888663 45678999999999999998742211 11 222467899999999887776677655 8999
Q ss_pred EEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEE-EeCC
Q 022074 153 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHD 231 (303)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat-g~~d 231 (303)
.+||.=......+. +++.+ . +.. ..++|.- +.+...+.. ++.+
T Consensus 807 HlWDPFigr~Laq~-------~dapk---------------~-------~a~---~~ikcl~----nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQM-------EDAPK---------------E-------GAG---GNIKCLE----NVDRHILIAGCSAE 850 (1034)
T ss_pred eeecccccchhHhh-------hcCcc---------------c-------CCC---ceeEecc----cCcchheeeeccch
Confidence 99995221111000 00000 0 000 0111111 112334444 4789
Q ss_pred CeEEEEECCCCeEEEEee-----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 232 SCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~-----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+++++|.+..+-..+++ +...-+.+++.-+.|+++|.+=.+|.|..-|...
T Consensus 851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 999999999887665554 3445688999999999999999999999888653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-06 Score=75.49 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=73.9
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESG 94 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 94 (303)
+|+..|+++.- +...-.-||-.-++.++++||+++|+++..|+.||+-..+.-.....+ .+|+..|..++..+ +
T Consensus 131 ~~~~di~s~~~---~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~ 205 (390)
T KOG3914|consen 131 VYSFDILSADS---GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--N 205 (390)
T ss_pred ceeeeeecccc---cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--C
Confidence 46667777633 222233799999999999999999999999999999877665444443 47999999999854 4
Q ss_pred cEEEEecCCCeEEEEcCcc
Q 022074 95 HLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~ 113 (303)
..|+|+|.|++|++||++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred ceeeecCCCCcEEEEeccc
Confidence 5689999999999999863
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00028 Score=71.99 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=118.6
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEec-cc-------------CCeEEEEEccCCCcEEEEecCC
Q 022074 39 SFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILA-HT-------------SDVNTVCFGDESGHLIYSGSDD 103 (303)
Q Consensus 39 ~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~-------------~~v~~l~~~~~~~~~l~s~s~d 103 (303)
.++ ..++++++ |+.+++-+..+.|+++|.... ....+.. .. ..-..+++.++.+.++++-..+
T Consensus 568 ~~P-~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 568 KFP-GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCC-ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 444 46888874 566777777888999998654 3322222 10 1235677754433344444556
Q ss_pred CeEEEEcCccccCCCccceeec----------cc-------ccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 104 NLCKVWDRRCLNVKGKPAGVLM----------GH-------LEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 104 g~v~lWd~~~~~~~~~~~~~~~----------~h-------~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
+.|+.+|.... .+..+. +. -..-..+++++ ++.++++.+.++.|++||.......
T Consensus 646 ~~Ir~id~~~~-----~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-- 718 (1057)
T PLN02919 646 HALREIDFVNE-----TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-- 718 (1057)
T ss_pred ceEEEEecCCC-----EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE--
Confidence 78998886421 111111 00 01224677888 5667788888999999997532100
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCCCeE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~ 244 (303)
.+. ...... ...+...............++++++ ++++.+.++.|++||+.++..
T Consensus 719 --------~~~-------G~G~~~---------~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 719 --------VFS-------GDGYER---------NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred --------EEe-------cCCccc---------cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 000 000000 0000000000000111234667776 555667789999999987653
Q ss_pred EEEee-------------c--------CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 245 VAALK-------------Y--------HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 245 ~~~~~-------------~--------h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
..... . .-.....++++++|+++++-..++.|++||..+.
T Consensus 775 ~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 775 RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 21110 0 0112468999999999999999999999998643
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00043 Score=62.22 Aligned_cols=118 Identities=21% Similarity=0.206 Sum_probs=91.1
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCC-eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg-~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
-||.++|.=..+..+++-++.|..|| .+-|+|..++. .+++...-+.|.++..+ ++++.++.+.....+-+.|+..
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididn- 432 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDN- 432 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecC-
Confidence 58999999999999988999999999 89999998886 34566667889999986 4688888888777887778753
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEE----EeCCCcEEEEEccc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLIS----NGKDQAIKLWDIRK 159 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~~~D~~v~lWdl~~ 159 (303)
+.+.-.-....+-++.++++++++.+|- |-....|+++|+..
T Consensus 433 ---gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 433 ---GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ---CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 2222222334456889999999998875 44567899999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-05 Score=70.99 Aligned_cols=117 Identities=14% Similarity=0.165 Sum_probs=99.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|-.+|.++.++-+-..|.+++.|..+-.|+.+..+....+......+..++++++ +..+++|+. +|++||++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D-~~~l~~as~--~ik~~~~~--- 172 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD-GKILLTASR--QIKVLDIE--- 172 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC-CCEEEeccc--eEEEEEcc---
Confidence 578899999999999999999999999999999999998888888889999999765 788888885 89999986
Q ss_pred CCCccceeecccccCeEEEEeCCC-----CCEEEE-EeCCCcEEEEEccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGD-----GRYLIS-NGKDQAIKLWDIRK 159 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s-~~~D~~v~lWdl~~ 159 (303)
+.+....|.||...|.++.|-.+ |.++++ ...+.-+.+|-++.
T Consensus 173 -~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 173 -TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 55677889999999999888655 666655 44678888887664
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.1e-05 Score=65.32 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.+|..-|..++|||..+ .+..++-+.+|.|.|+++.........+ ..+.+++|.-++.+.+..|..+|.|.+||.|.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 57888999999999776 7888999999999999999877777777 67899999777788999999999999999873
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0014 Score=66.04 Aligned_cols=198 Identities=16% Similarity=0.236 Sum_probs=123.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEE----ECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc-
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVY----DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR- 112 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lw----d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~- 112 (303)
-...|.++.+-++...++.+..+|.|.+. +..+.... ..-.-+.+|.+.+|+|+ .++|+.++.++++.+-...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPD-EELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccc
Confidence 34679999999999999999999999999 55444322 23345679999999865 6788888888888764311
Q ss_pred -----------ccc---------------CC---Ccc--------------ceeecccccCeEEEEeCCCCCEEEEEeC-
Q 022074 113 -----------CLN---------------VK---GKP--------------AGVLMGHLEGITFIDSRGDGRYLISNGK- 148 (303)
Q Consensus 113 -----------~~~---------------~~---~~~--------------~~~~~~h~~~v~~~~~~~~~~~l~s~~~- 148 (303)
... .. ++. ...+. +.+.-..++|..||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 000 00 000 00111 2334557889999999988775
Q ss_pred ---C--CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 149 ---D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 149 ---D--~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
+ +.+|+|+-.. ...... + .+..+ .-...+.|.|.
T Consensus 231 ~~~~~~R~iRVy~ReG-~L~stS---------------------------E-~v~gL------------e~~l~WrPsG~ 269 (928)
T PF04762_consen 231 PETGSRRVIRVYSREG-ELQSTS---------------------------E-PVDGL------------EGALSWRPSGN 269 (928)
T ss_pred cCCCceeEEEEECCCc-eEEecc---------------------------c-cCCCc------------cCCccCCCCCC
Confidence 2 5788887421 100000 0 00000 00122456777
Q ss_pred EEEEEeC---CCeEEEEECCCCeEEEEee----cCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 224 YIYTGSH---DSCVYVYDLVSGEQVAALK----YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 224 ~latg~~---dg~i~iwd~~~~~~~~~~~----~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++|+.-. ...|.+|. ++|-.-..|. .....|..++||+|+..||..-.|. +++|..
T Consensus 270 lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 270 LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 7777542 34455554 5665544443 3356899999999999999987665 999974
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.002 Score=57.78 Aligned_cols=184 Identities=19% Similarity=0.265 Sum_probs=103.1
Q ss_pred cceEEEEEcCCCCEEEEee-CCCeEEEEECCCCc--eEE--EE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 40 FGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK--LSL--RI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~--~~~--~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
....++.|+|+|+++++.. ....|++|+++... +.. .+ .....+-..+.|+++.....+....+++|.++++..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~ 223 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP 223 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence 3468899999999888864 23469999997765 322 12 234457789999765444455667788999998651
Q ss_pred ccCCCccceeec----ccc--cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 114 LNVKGKPAGVLM----GHL--EGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 114 ~~~~~~~~~~~~----~h~--~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
............ +.. .....+.++|+|++|..+. ...+|-+|++........
T Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~--------------------- 282 (345)
T PF10282_consen 224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT--------------------- 282 (345)
T ss_dssp TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE---------------------
T ss_pred cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE---------------------
Confidence 111111111111 111 2466788999999876655 577899998843110000
Q ss_pred ccccCCCCCcceEEe-cccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEEC--CCCeEEEEee-cCCCCeEEEEE
Q 022074 187 RDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDL--VSGEQVAALK-YHTSPVRDCSW 260 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~--~~~~~~~~~~-~h~~~I~~v~~ 260 (303)
.+.... +... .....+++++++|++++ .++.|.+|++ ++|.+...-. ..-....||.|
T Consensus 283 ---------~~~~~~~~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 283 ---------LVQTVPTGGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ---------EEEEEEESSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ---------EEEEEeCCCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 000000 0000 11223678999988876 6778999976 5776533321 22345666665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4e-05 Score=65.20 Aligned_cols=124 Identities=21% Similarity=0.317 Sum_probs=87.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEeccc-----CCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~-----~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
++|..-|.+++|+.|.+.++++ .|=.|.+|.+.--... .-+.+|+ ..++...|+|..-++|.-.+..|+|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 6899999999999999988876 4667999987643222 2234454 35677789887677787888899999
Q ss_pred EEcCccccCCCcccee------------ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 108 VWDRRCLNVKGKPAGV------------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
+-|+|....-..+... +.+-..++..+.|+++|+|+++-.. -+|++||++..+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 9998732111111111 1223456777889999999988765 789999998643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0039 Score=55.63 Aligned_cols=96 Identities=13% Similarity=0.036 Sum_probs=61.7
Q ss_pred CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---------CCCeEEEEcCccccCCCccceeecc-----
Q 022074 61 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---------DDNLCKVWDRRCLNVKGKPAGVLMG----- 126 (303)
Q Consensus 61 g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~lWd~~~~~~~~~~~~~~~~----- 126 (303)
++|.+.|..+++....+..-..+- .+ ++++...+.++.+ .+..|.+||..... ....+.-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----PIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----EEeEEccCCCch
Confidence 789999999988766555322222 23 6665444444555 58899999986432 2222211
Q ss_pred --cccCeEEEEeCCCCCEEEEEe-C-CCcEEEEEcccccC
Q 022074 127 --HLEGITFIDSRGDGRYLISNG-K-DQAIKLWDIRKMSS 162 (303)
Q Consensus 127 --h~~~v~~~~~~~~~~~l~s~~-~-D~~v~lWdl~~~~~ 162 (303)
....-..++++++|++|+... . +..|-+.|+...+.
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 112233567899999988766 4 79999999986543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.3e-06 Score=79.15 Aligned_cols=116 Identities=16% Similarity=0.252 Sum_probs=80.6
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC-eEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg-~v~lWd~~~~~ 115 (303)
-|+....|++|+.+.++|++|+..|.|++|++.+|........|...|+.+..+.+...+|.++++.. -..+|+...
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s-- 1176 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS-- 1176 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc--
Confidence 45578999999999999999999999999999999988888899999999987544333444444444 567999753
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
...+...| ..-.++.|+..-..-+.|..-....+||+..
T Consensus 1177 -~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT 1215 (1516)
T KOG1832|consen 1177 -TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQT 1215 (1516)
T ss_pred -ccCccccc----cccceeehhhhHHHHHhcccccceEEEeccc
Confidence 22233233 2234555655432233344446788999865
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00045 Score=65.48 Aligned_cols=237 Identities=17% Similarity=0.140 Sum_probs=136.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC-----------CcEEEEecCCCeEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----------GHLIYSGSDDNLCKV 108 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~-----------~~~l~s~s~dg~v~l 108 (303)
....+++|+|.|- ++-| .-..|.+.|..+-+.+..+..|...|+.+.|.|.. --+++++.-.|.|.+
T Consensus 16 sN~~A~Dw~~~GL-iAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSGL-IAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccce-EEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 3467889999873 3334 44569999999988888888899999999996531 125778888999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEe---CCCC-CEEEEEeCCCcEEEEEcccccCCcccccC------ccceeeece
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDS---RGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLG------FRSYEWDYR 178 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~---~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~------~~~~~~~~~ 178 (303)
||.. ....+..+..|.+++-.+.| .++. ..|+.-..-..+-+|+........+.... ++...|+.+
T Consensus 94 ~d~~----~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 94 VDFV----LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred EEeh----hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 9975 22334445556666544433 2333 45667677788899977654433332211 111111111
Q ss_pred eeeC----------------CCCC--ccc--cCCCCC----cceEEecccceee-----eEEEeeeeeeeCCCeEEEEEe
Q 022074 179 WMDY----------------PPQA--RDL--KHPCDQ----SVATYKGHSVLRT-----LIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 179 ~~~~----------------~~~~--~~~--~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~latg~ 229 (303)
.+.+ +|.. +.+ ...+.. ...+..|...... .+.....-.|+|.-+.++-..
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 1100 0100 000 000000 0000001000000 000000112444444444445
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEeecC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~Wd~~ 282 (303)
--..+.++|++-...+....-..+.+.=+.|-|+++ .|.+.=.||.+.+|--+
T Consensus 250 ~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 567799999988888888776666667778888875 79999999999999754
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.4e-06 Score=76.49 Aligned_cols=203 Identities=13% Similarity=0.221 Sum_probs=122.4
Q ss_pred cceEEEEEcCCCC--EEEEeeCCCeEEEEECCCCceE--EEEecccCCeEEEEEccCCCcEEEEec----CCCeEEEEcC
Q 022074 40 FGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGS----DDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~~g~--~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s----~dg~v~lWd~ 111 (303)
+.+.|+++.-+.+ .+++|..+|.|-+-........ ....+|...+++++|++-+.+.|+.|- .|..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4578888775443 7889999999999877554322 234567788999999876667777663 3678899998
Q ss_pred ccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 112 RCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
...-...+....+.+ -.++..++.+..+.+++++|..-+.+.++|+|..... ++. + +++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~--~~s-v--------------nTk--- 196 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDS--VSS-V--------------NTK--- 196 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhh--hhh-h--------------hhh---
Confidence 532101011112222 3345556667778888999999999999999842110 000 0 000
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE-CCCCeE-EEEeecCC-----CCeEEEEECCC
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD-LVSGEQ-VAALKYHT-----SPVRDCSWHPS 263 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd-~~~~~~-~~~~~~h~-----~~I~~v~~sp~ 263 (303)
...|.. + .| |+ ..|+++ ..||.|.+|| ..+-+. +..+ .|. ..+..++|.|.
T Consensus 197 --------~vqG~t----V-----dp-~~--~nY~cs-~~dg~iAiwD~~rnienpl~~i-~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 197 --------YVQGIT----V-----DP-FS--PNYFCS-NSDGDIAIWDTYRNIENPLQII-LRNENKKPKQLFALAYCPT 254 (783)
T ss_pred --------hcccce----e-----cC-CC--CCceec-cccCceeeccchhhhccHHHHH-hhCCCCcccceeeEEeccC
Confidence 000000 0 01 22 335554 4599999999 333322 2111 222 24899999998
Q ss_pred CC-eEEEEeC-CCCEEEeecCCC
Q 022074 264 QP-MLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~-~las~s~-Dg~i~~Wd~~~~ 284 (303)
.+ ++++... .++|++.|+...
T Consensus 255 rtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred CcchhhhhccCcceEEEeccccc
Confidence 65 4555444 478999997643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.97 E-value=3e-05 Score=44.11 Aligned_cols=39 Identities=38% Similarity=0.655 Sum_probs=34.6
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
++.+..+..|...|+++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0022 Score=53.78 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=71.9
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCC--eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce-eeccccc
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLE 129 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~ 129 (303)
.+.-++.|.+++++++..+... ...|... ++.+.+++ +++++++.+....|..|.+..... .... .+..-++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~a~t~D 204 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESE--YIENIYEAPTSD 204 (344)
T ss_pred ceeeccCCcceeEEEEecCccc--ceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccc--eeeeeEecccCC
Confidence 3666788888988888766443 3334443 77888864 588998999888999997752111 1111 2222334
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
.=-+.+|+....++|++..||++.|||+|.+
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 4456778888999999999999999999864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0003 Score=64.15 Aligned_cols=111 Identities=20% Similarity=0.322 Sum_probs=78.1
Q ss_pred ccceEEEEEcCCCCEEEEe--eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCcc
Q 022074 39 SFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRC 113 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sg--s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~ 113 (303)
++||+++.|+++|+.++++ =.=.++.|||++..- +. .--.+.=+++.|+| .+++++-++. .|.+-+||...
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~--df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF--DFPEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE--eCCCCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence 5799999999999865553 345689999996653 22 22335567888975 6788776654 68999999752
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeC------CCcEEEEEccc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK------DQAIKLWDIRK 159 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------D~~v~lWdl~~ 159 (303)
.+.+..+ ....-+-+.|+|||++|+|+.. |..++||+...
T Consensus 346 ----~K~i~~~--~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 346 ----RKLIAKF--KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ----hhhcccc--ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 2223333 1233456689999999998775 89999998753
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=60.81 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=50.1
Q ss_pred eeeeCCCeEEEEE---eCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCeEEEEeC------CCCEEEeecCCC
Q 022074 216 PVYSTGQKYIYTG---SHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSW------DGDVVRWEFPGN 284 (303)
Q Consensus 216 ~~~s~~~~~latg---~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~ 284 (303)
.-++|.|++++.+ |..|.+.++|....+. ......| ...+.+.|.|+|++++|++. |.--++|++++.
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 4478899998876 4678999999874332 1112234 35689999999999999886 566778998876
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0046 Score=56.16 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=118.7
Q ss_pred cceEEEEEcCCCC--EEEE-----eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEe------c-----
Q 022074 40 FGIFSLKFSTDGR--ELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG------S----- 101 (303)
Q Consensus 40 ~~v~~l~~s~~g~--~l~s-----gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~------s----- 101 (303)
.+|..-+|+|.|+ .|+. .+.++.++||.+..+....+-.-..-.-..+.|++ .++.++.= +
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeeccccee
Confidence 4577788888643 3333 35688899999986654322111111224556654 34433211 1
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeecee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 179 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (303)
....+.|++++ .+-+....+-.+.|..+.|.|.++.+++.+ .+.++-++|++.- . .+
T Consensus 253 gesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l-------~~---- 311 (561)
T COG5354 253 GESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----L-------RF---- 311 (561)
T ss_pred ccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-----e-------EE----
Confidence 12456677654 222333334567899999999888886655 6778888887631 0 00
Q ss_pred eeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEE-EEeecCCCCe
Q 022074 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQV-AALKYHTSPV 255 (303)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~-~~~~~h~~~I 255 (303)
.+|++.+ ..+.|||.+++++.++ ..|.|-+||...+-++ ..+.+. ..
T Consensus 312 -~~Pe~~r--------------------------NT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~ 362 (561)
T COG5354 312 -YFPEQKR--------------------------NTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NT 362 (561)
T ss_pred -ecCCccc--------------------------ccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--Cc
Confidence 0111110 1234777888888866 4678999998766543 366554 35
Q ss_pred EEEEECCCCCeEEEEeC------CCCEEEeecCCCCcc
Q 022074 256 RDCSWHPSQPMLVSSSW------DGDVVRWEFPGNGEA 287 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~------Dg~i~~Wd~~~~~~~ 287 (303)
.-+.||||++++-++-. |..+++||+.+....
T Consensus 363 s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 363 SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred eEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 67889999997666533 788999998776433
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.012 Score=49.92 Aligned_cols=186 Identities=18% Similarity=0.222 Sum_probs=107.7
Q ss_pred eEEEEEc-CCCCEEEEeeCCCeEEEEECCCCceEEEEec-----ccCCeEEEEEccCCCcEEEEecCC--------CeEE
Q 022074 42 IFSLKFS-TDGRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGSDD--------NLCK 107 (303)
Q Consensus 42 v~~l~~s-~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~s~d--------g~v~ 107 (303)
...+.+. ++ ..++.+..++ +.++|..+++....... .....+.+++.+ ++++.++.... |.|.
T Consensus 42 ~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceE
Confidence 6677777 55 5556666666 56669988865433222 234678888864 57777766543 4566
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.++.. ++ ...........+.++++++++.| ++-+..+.|..+++........... .....+.
T Consensus 119 ~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~---------~~~~~~~-- 181 (246)
T PF08450_consen 119 RIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR---------VFIDFPG-- 181 (246)
T ss_dssp EEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE---------EEEE-SS--
T ss_pred EECCC-----Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeee---------eEEEcCC--
Confidence 66632 11 22222234456788999999866 5677788888888753221000000 0000000
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC-CCCC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP 265 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s-p~~~ 265 (303)
. . ...+ ...+..+|.+.++....+.|.++|.+ |+.+..+......+++++|. |+.+
T Consensus 182 -------~-~-g~pD-------------G~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 182 -------G-P-GYPD-------------GLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp -------S-S-CEEE-------------EEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred -------C-C-cCCC-------------cceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 0 0 0000 01234578888887889999999987 88888887665689999994 5655
Q ss_pred -eEEEE
Q 022074 266 -MLVSS 270 (303)
Q Consensus 266 -~las~ 270 (303)
+++|.
T Consensus 239 ~L~vTt 244 (246)
T PF08450_consen 239 TLYVTT 244 (246)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 44443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.7e-05 Score=68.61 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=55.0
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|+...|+.|++||.|.+||...+... +....-.++.++|||+|.+++.|++.|.+.+||.+-+
T Consensus 267 ~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 267 RSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 5678899999999999999998766432 3345567899999999999999999999999997654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0022 Score=63.82 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=120.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc----ccc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR----CLN 115 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~----~~~ 115 (303)
..|.++.|..+.+.++.+..+|.|.+-|..+..... .-.-..+|.+.+|+++ .+.++-.+.++++.+-... ...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~D-ee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPD-EELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCC-CcEEEEEeCCcEEEEEeccccchhcc
Confidence 579999999999999999999999999888776432 3345678999999764 6788888877888653210 000
Q ss_pred C-------CC--------ccceeecc------------c---------ccCeEEEEeCCCCCEEEEEe----CC-CcEEE
Q 022074 116 V-------KG--------KPAGVLMG------------H---------LEGITFIDSRGDGRYLISNG----KD-QAIKL 154 (303)
Q Consensus 116 ~-------~~--------~~~~~~~~------------h---------~~~v~~~~~~~~~~~l~s~~----~D-~~v~l 154 (303)
. .. +....|.| + .+.-+.+.|..||.++++.. .+ +.+++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0 00 00001111 0 11123477889999998732 24 89999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEE---eCC
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG---SHD 231 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg---~~d 231 (303)
||-. ...+.... ..+. .+. +..+-|.|.++++- .+|
T Consensus 227 ~drE-g~Lns~se----~~~~------------------l~~------------------~LsWkPsgs~iA~iq~~~sd 265 (1265)
T KOG1920|consen 227 YDRE-GALNSTSE----PVEG------------------LQH------------------SLSWKPSGSLIAAIQCKTSD 265 (1265)
T ss_pred eccc-chhhcccC----cccc------------------ccc------------------ceeecCCCCeEeeeeecCCC
Confidence 9865 11110000 0000 000 01122445555552 345
Q ss_pred CeEEEEECCCCeEEE----EeecCCCCeEEEEECCCCCeEEE---EeCCCCEEEeecC
Q 022074 232 SCVYVYDLVSGEQVA----ALKYHTSPVRDCSWHPSQPMLVS---SSWDGDVVRWEFP 282 (303)
Q Consensus 232 g~i~iwd~~~~~~~~----~~~~h~~~I~~v~~sp~~~~las---~s~Dg~i~~Wd~~ 282 (303)
+.|.++. ++|-.-. .+.....+|..++|+.++..||. ......+++|...
T Consensus 266 ~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CcEEEEe-cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 6788886 3453322 22344556999999999999888 6666669999754
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=69.06 Aligned_cols=147 Identities=16% Similarity=0.276 Sum_probs=96.0
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---------CCeEEEEcCccccCCCc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---------DNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---------dg~v~lWd~~~~~~~~~ 119 (303)
.+++.+.+|...|+|.|-|.++-+.++++..|.+.+.++.. .++.|++++. |..|++||+|-. +
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----r 257 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM----R 257 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhh----h
Confidence 46789999999999999999999999999999998888655 3678888874 667889998732 1
Q ss_pred cceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 120 PAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.+..+.-+.++ ..+.|.|. ...++.++.-|.+.+-|...... |+....+..++...+.
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~ 316 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN--------------------PPAGVKMVNPNGSGIS 316 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC--------------------CccceeEEccCCCcce
Confidence 22222223232 23334442 34567777778888887432111 1111111112211111
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.-.+|+++..+|.|..+|.|.+|--
T Consensus 317 ----------------~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 317 ----------------AFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ----------------eEEecCCCceEEEecccCcEeeecC
Confidence 1235778999999999999999973
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00074 Score=62.32 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=67.0
Q ss_pred EEEEECCCCceEE---EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC
Q 022074 63 IYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139 (303)
Q Consensus 63 v~lwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 139 (303)
-.+|+...++... +.......|.+.+++| +.+.|+.|..||+|.+||... ....+....-..+.++|+|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~------~~t~~~ka~~~P~~iaWHp~ 310 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTR------GVTLLAKAEFIPTLIAWHPD 310 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCC------CeeeeeeecccceEEEEcCC
Confidence 3677777665432 2335667899999976 467888999999999999642 12223334445678899999
Q ss_pred CCEEEEEeCCCcEEEEEccc
Q 022074 140 GRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 140 ~~~l~s~~~D~~v~lWdl~~ 159 (303)
|..++.|+.-|.+.+||+..
T Consensus 311 gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 311 GAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CcEEEEEcCCceEEEEEeec
Confidence 99999999999999999863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00049 Score=65.89 Aligned_cols=108 Identities=13% Similarity=0.247 Sum_probs=77.4
Q ss_pred EEEcCCCCEEEEee----CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 45 LKFSTDGRELVAGS----SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 45 l~~s~~g~~l~sgs----~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.+|+|....+++++ ..|.|.|| +++|....-+ ...-.+.++||+|. .-+|+.|=.-|.+.+|... ..+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~----~~e~ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTN----TTET 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChH-HHHHhhccccceeEEEecC----Ccee
Confidence 57888888888876 46789888 3445422111 11113567999764 4467777778899999853 2233
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
......|..++..+.|+++|+.++|+..-|.|.+|....
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 344556999999999999999999999999999997653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=7.6e-05 Score=66.38 Aligned_cols=199 Identities=16% Similarity=0.141 Sum_probs=116.5
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEc
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDI 157 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl 157 (303)
-|.+.|+.+.. ...+.+.+++.||.++.|....... ...+..+..|...+.++..+-++.++.|.+. |+.+|++|+
T Consensus 7 mhrd~i~hv~~--tka~fiiqASlDGh~KFWkKs~isG-vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFP--TKAKFIIQASLDGHKKFWKKSRISG-VEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEee--ehhheEEeeecchhhhhcCCCCccc-eeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 36566666653 3467999999999999997431110 1123345567777888888889999999777 999999998
Q ss_pred ccccCCcccccCccc--eeeeceeeeCCCCCc-ccc--CCCCCcceEEecccc---eeeeEEEeeeee----eeCCCeEE
Q 022074 158 RKMSSNASCNLGFRS--YEWDYRWMDYPPQAR-DLK--HPCDQSVATYKGHSV---LRTLIRCHFSPV----YSTGQKYI 225 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~s~~~~~l 225 (303)
..........+.+.+ .+|.. .+.+.. .+. ......+...++... ...-...|++|+ +.+-+..+
T Consensus 84 En~DminmiKL~~lPg~a~wv~----skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWVT----SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred eccchhhhcccccCCCceEEec----CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 764433222222111 11111 000000 000 001111222211110 001112233332 34556677
Q ss_pred EEEeCCCeEEEEECCC-Ce-----E---------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 226 YTGSHDSCVYVYDLVS-GE-----Q---------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 226 atg~~dg~i~iwd~~~-~~-----~---------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++....|-|.-|..+- .+ . +..+........++.|+|++..+++-+.|+.++++.+.+.
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 8888889999998762 11 1 1122233457899999999999999999999999998765
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.021 Score=57.65 Aligned_cols=113 Identities=20% Similarity=0.271 Sum_probs=76.1
Q ss_pred cccceEEEEEcCCCCEEEEeeC---C---CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEE
Q 022074 38 YSFGIFSLKFSTDGRELVAGSS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKV 108 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~---D---g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~l 108 (303)
+...-..|+|..||+++|+.+. + ..+|||+-+ |.+......-.+--.+++|. |+++++++... ...|..
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEE
Confidence 4456788999999999999874 3 478999876 54443333333334577895 56889988764 456677
Q ss_pred EcCccccCCCccceeec----ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 109 WDRRCLNVKGKPAGVLM----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
|... +-..+.|. .....|..+.|+.++..|+.--.|. |.+|-..
T Consensus 286 fErN-----GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 286 FERN-----GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred EecC-----CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 7632 22222221 2345688999999999888866555 9999764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.011 Score=53.59 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=107.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
.+..+++++.+|.+.-+|..+|+..-+..-.......... .+..++.++.++.+..+|....+...+. .+ .+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~--~~---~~ 135 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRA--KL---SS 135 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeee--cc---Cc
Confidence 3678999999999999999999865443322221222222 2456777888999999997533221110 01 01
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC--CCccccCCCCCcceEEe---ccc
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP--QARDLKHPCDQSVATYK---GHS 204 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 204 (303)
.+.+.... .+..++.+..++.+..||.+..+.............. .....|. ....+.......+..++ |..
T Consensus 136 ~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~--~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL--RGSASPVIADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee--cCCCCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 11110001 2346667778899999998754433222111000000 0000000 00000000111111111 110
Q ss_pred ceeee-------------EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 205 VLRTL-------------IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 205 ~~~~~-------------~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
..... .....+|.. .+..+..++.+|.++.+|.++|+.+-..+. .. ... ....+..+..++
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~-~~~--p~~~~~~vyv~~ 286 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA-SS-YQG--PAVDDNRLYVTD 286 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc-CC-ccC--ceEeCCEEEEEC
Confidence 00000 000112222 234677788899999999999987655431 11 111 122456777777
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.||.+..+|...
T Consensus 287 ~~G~l~~~d~~t 298 (377)
T TIGR03300 287 ADGVVVALDRRS 298 (377)
T ss_pred CCCeEEEEECCC
Confidence 899999988754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0053 Score=55.67 Aligned_cols=175 Identities=18% Similarity=0.135 Sum_probs=100.7
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEec-ccC---C------e-EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILA-HTS---D------V-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~---~------v-~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
..++.+..+|.+.-+|+.+|+..-+... ... . + ....+ .+..++.++.+|.++.+|.+..+.
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~---- 263 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRV---- 263 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcE----
Confidence 4678888899999999999875432211 000 0 0 01111 134677788899999999753221
Q ss_pred ceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 121 AGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
.-... . ...... ...+..++.++.|+.+..+|....+.. |.... +
T Consensus 264 ~W~~~-~-~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~-----------W~~~~--------------------~ 308 (377)
T TIGR03300 264 LWKRD-A-SSYQGP--AVDDNRLYVTDADGVVVALDRRSGSEL-----------WKNDE--------------------L 308 (377)
T ss_pred EEeec-c-CCccCc--eEeCCEEEEECCCCeEEEEECCCCcEE-----------Ecccc--------------------c
Confidence 11110 0 111111 124567888888999999997543211 11000 0
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
.+ ....+|.. .+..+++++.+|.++++|..+|+.+..++.+..++..--.-.++ .|..++.||.|..|
T Consensus 309 ~~--------~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 309 KY--------RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred cC--------CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 00 00011221 24578889999999999999999988887665443322222233 47788889998865
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0072 Score=52.66 Aligned_cols=194 Identities=14% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCeEEEEECCCC--ceE-EEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCcc--ceeecccccCe
Q 022074 60 DDCIYVYDLEAN--KLS-LRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKP--AGVLMGHLEGI 131 (303)
Q Consensus 60 Dg~v~lwd~~~~--~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~--~~~~~~h~~~v 131 (303)
+.-|++|++.+. ++. .+...+.+..+-++|+++ .+.|.++.+ +|.|.-|.+... .++. +.....-..+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~--~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPD--DGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCC--CCeEEEeeccccCCCCC
Confidence 345999988743 221 234456678889999754 556666654 466666654311 1111 11111112233
Q ss_pred EEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 132 TFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
+.++++++++++++++. -+.|.++-++..-..... . ..+.+.... .| ......
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-------v------------~~~~h~g~~------p~-~rQ~~~ 145 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV-------V------------QVVKHTGSG------PH-ERQESP 145 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccc-------e------------eeeecCCCC------CC-ccccCC
Confidence 77889999999888775 578888876542110000 0 000000000 00 000111
Q ss_pred EEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEE----EeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecCCC
Q 022074 211 RCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVA----ALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPGN 284 (303)
Q Consensus 211 ~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~----~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~~ 284 (303)
.+|+ ..+.|++++|++.. ..-+|.+|++..|++.. .+ ....-...+.|+|++++.-... -++++.+|+....
T Consensus 146 h~H~-a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 146 HVHS-ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred ccce-eeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 1222 24678998888864 34469999999776422 22 2234568999999999755544 4899999987654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0038 Score=59.61 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=83.9
Q ss_pred CCcccceEEEEEcCC-------------CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC----CCcEEE
Q 022074 36 GGYSFGIFSLKFSTD-------------GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE----SGHLIY 98 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-------------g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~ 98 (303)
+.|++.|+-..+.-+ |+++++||.||+|.|-.+.+++...++ ....++..++++|+ ..++++
T Consensus 55 GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv 133 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFV 133 (846)
T ss_pred ccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhhee
Confidence 678888888777766 999999999999999999888765433 44568899999765 356899
Q ss_pred EecCCCeEEEEcCccccCCCccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+|+.-| +.++..+-. +.... .+..-.++|.++.|. |+++|=++ |-.|++||+..
T Consensus 134 ~GG~ag-lvL~er~wl---gnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~ 188 (846)
T KOG2066|consen 134 SGGMAG-LVLSERNWL---GNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPT 188 (846)
T ss_pred ecCcce-EEEehhhhh---cCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccc
Confidence 999988 888764311 11111 233344678888874 66777665 45579999864
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0059 Score=51.26 Aligned_cols=196 Identities=18% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc-cceeeccc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGVLMGH 127 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~-~~~~~~~h 127 (303)
++++.+++++.++.++.||..+|+..-+.... +.+..... .. +..++.++.++.++.+|.+..+...+ ........
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VD-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EE-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ec-ccccccccceeeeEecccCCcceeeeecccccccc
Confidence 35778888899999999999999876554432 22111112 12 34556666778999998653322111 00000000
Q ss_pred -ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccce
Q 022074 128 -LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL 206 (303)
Q Consensus 128 -~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (303)
........+ .+..++.+..++.+..+|++..+....... ..+.... .+..+
T Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~------------~~~~~~~--------~~~~~------ 162 (238)
T PF13360_consen 111 GVRSSSSPAV--DGDRLYVGTSSGKLVALDPKTGKLLWKYPV------------GEPRGSS--------PISSF------ 162 (238)
T ss_dssp STB--SEEEE--ETTEEEEEETCSEEEEEETTTTEEEEEEES------------STT-SS----------EEEE------
T ss_pred ccccccCceE--ecCEEEEEeccCcEEEEecCCCcEEEEeec------------CCCCCCc--------ceeee------
Confidence 011111222 266788888899999999875433221111 0000000 00000
Q ss_pred eeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 207 RTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 207 ~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
......+.+ .++ .+..++.++. +.+ |..+++.+-... ...+..+ ..+++..|+.++.++.+..||+...
T Consensus 163 ---~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 163 ---SDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ---TTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ---cccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 000011222 234 5566666664 566 999998663222 2222221 4567777777779999999998754
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.001 Score=62.69 Aligned_cols=240 Identities=15% Similarity=0.157 Sum_probs=135.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec--ccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+..-||+..|.-+.|+.+.+.|-++..+|.|.+|=+-.|.....+.. .++-|.+++|+. +++.+...-.||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEe
Confidence 34459999999999999999999999999999998887765433322 345678889965 477777777788776532
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc---cCCccccc---------C--ccceeee
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM---SSNASCNL---------G--FRSYEWD 176 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~---~~~~~~~~---------~--~~~~~~~ 176 (303)
++....-+ ..+.|. -...+.+++|.++++-+-..|.+.++|.... +...+|.. + ...+.|.
T Consensus 144 vdGNRIwg---KeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 144 VDGNRIWG---KELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred eccceecc---hhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 21100000 011110 0124557888888888888899999986531 11111100 0 1111121
Q ss_pred ce-eeeCCCCCccccCCCCCcceEEe-----cccceeeeEEEeeeeeeeCCCeEEEEEeCCC---------eEEEEECCC
Q 022074 177 YR-WMDYPPQARDLKHPCDQSVATYK-----GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---------CVYVYDLVS 241 (303)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---------~i~iwd~~~ 241 (303)
.. ....+|+.+.+...-.+...-+. ....+...---.....++++|..||.+|.|. .|.++.. -
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~ 297 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-Y 297 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-c
Confidence 11 01112222222111111100000 0000000000011234678899999988643 4666654 4
Q ss_pred CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 242 ~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
|+.+.+++.....|++++|-..|-.+|-+- |+.|.+=+
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 677888888888999999988887666664 55555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0088 Score=57.67 Aligned_cols=196 Identities=13% Similarity=0.178 Sum_probs=115.2
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCceE-EEEecccCC-eEEEEEccCCCcEEEEecCCC-----eEEEEcCccccCCC
Q 022074 46 KFSTDGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSD-VNTVCFGDESGHLIYSGSDDN-----LCKVWDRRCLNVKG 118 (303)
Q Consensus 46 ~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg-----~v~lWd~~~~~~~~ 118 (303)
+|++++..++.|+.||.|.+++- +... .-+..+... |..+.. .+..+.|++.++|+ .+++||+.-...+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~-~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYI-LNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cceeeehheecchhhhhHhhc-ccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35678889999999999877743 3322 345556555 444433 34446788777665 48999986332222
Q ss_pred cccee----eccc-----ccCeEEEEeCCCCCEEEEEeCCCcEEEEE--cccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 119 KPAGV----LMGH-----LEGITFIDSRGDGRYLISNGKDQAIKLWD--IRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 119 ~~~~~----~~~h-----~~~v~~~~~~~~~~~l~s~~~D~~v~lWd--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
.|... ...| ..++.+++++.+-..+|.|=.||.|.++. +.+.... .. .+
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~--------------~~----- 166 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQ--------------DY----- 166 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ce--------------ee-----
Confidence 13222 1222 33577888888888889999999999983 2111100 00 00
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEECCCCCe
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
.+....++. - ..+..+++.++-+.....|.+|.+....+ +..+..|..+++|.+|++..+.
T Consensus 167 --~~~~~~pIT----------g------L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q 228 (933)
T KOG2114|consen 167 --SHRGKEPIT----------G------LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ 228 (933)
T ss_pred --eccCCCCce----------e------eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc
Confidence 000000110 0 11222344433344456789999875442 5557788899999999998875
Q ss_pred EEEEeCCCCEEEeecCC
Q 022074 267 LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~ 283 (303)
++.|+. .-+.+++.++
T Consensus 229 fIca~~-e~l~fY~sd~ 244 (933)
T KOG2114|consen 229 FICAGS-EFLYFYDSDG 244 (933)
T ss_pred EEEecC-ceEEEEcCCC
Confidence 666553 4677887653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.6e-05 Score=72.44 Aligned_cols=158 Identities=12% Similarity=0.245 Sum_probs=101.4
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC--c
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--A 151 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~--~ 151 (303)
+..+..|+..-+|++|+- ..+.|+.|+..|.|++++..++ .-.....+|..+|+-+..+.+|..+++.+.-. -
T Consensus 1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG----~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSG----SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCc----cccccccccccccccccccCCcceeeeeccccCch
Confidence 345667888889999964 5678899999999999997643 33456778999999998888998877765432 4
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
.-+|++.. ... ...++++.. .+ .|+..-++-+.|..-
T Consensus 1169 saLW~~~s---~~~------------------------------~~Hsf~ed~----~v------kFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1169 SALWDASS---TGG------------------------------PRHSFDEDK----AV------KFSNSLQFRALGTEA 1205 (1516)
T ss_pred HHHhcccc---ccC------------------------------ccccccccc----ee------ehhhhHHHHHhcccc
Confidence 66787653 111 111111111 01 122222222334444
Q ss_pred CeEEEEECCCCeEEEEe-e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 232 SCVYVYDLVSGEQVAAL-K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~-~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....+||+.++.++.++ . +.+..=+.+.|||+..+++--| .+||+..+
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG-----vLWDvR~~ 1257 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG-----VLWDVRIP 1257 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc-----eeeeeccH
Confidence 56899999998765542 2 2233447888999998877544 57998754
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0096 Score=54.17 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCC---------------eEEEEECCCCceEEEEecccCC--eE-EEEEccCCCcEEEEecC
Q 022074 41 GIFSLKFSTDGRELVAGSSDD---------------CIYVYDLEANKLSLRILAHTSD--VN-TVCFGDESGHLIYSGSD 102 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg---------------~v~lwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~s~ 102 (303)
-|+-+.|+|++++|.+=+.-. .+.+||..++.++..+...... .. -+.|+.+ +++++=- -
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~-D~y~ARv-v 150 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID-DKYVARV-V 150 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeec-chhhhhh-c
Confidence 388899999999999876433 4899999999887665544433 33 5566543 3444322 2
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC--CEEE-----EEeCCCcEEEEEcccccCCcccccCccceee
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLI-----SNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 175 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~-----s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~ 175 (303)
...++++++. .+....+...+ ...++....++|.+ ..|+ ..+.+..+++|.+..-....+.++ +
T Consensus 151 ~~sl~i~e~t-~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f----- 221 (561)
T COG5354 151 GSSLYIHEIT-DNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F----- 221 (561)
T ss_pred cCeEEEEecC-CccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E-----
Confidence 3468888852 22222233222 13556666777753 2233 255677777776642111111100 0
Q ss_pred eceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 176 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
.. +.+...++... . .+-+.....+..+..++ .+..+++++++....--. ....++|
T Consensus 222 k~----------------~~~qLkW~~~g--~-~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~i~V~-~~~~~pV 277 (561)
T COG5354 222 KV----------------SGVQLKWQVLG--K-YLLVLVMTHTKSNKSYF----GESNLYLLRITERSIPVE-KDLKDPV 277 (561)
T ss_pred ee----------------cccEEEEecCC--c-eEEEEEEEeeeccccee----ccceEEEEeeccccccee-ccccccc
Confidence 00 00000000000 0 00000000111122222 256789999875553222 2567899
Q ss_pred EEEEECCCCCeEE--EEeCCCCEEEeecCCC
Q 022074 256 RDCSWHPSQPMLV--SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 256 ~~v~~sp~~~~la--s~s~Dg~i~~Wd~~~~ 284 (303)
.+.+|+|+++.++ +|-.+-++.++|++++
T Consensus 278 hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 278 HDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred eeeeecccCCceeEEecccccceeecccccc
Confidence 9999999987554 4457888888888766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.041 Score=46.65 Aligned_cols=192 Identities=15% Similarity=0.187 Sum_probs=107.2
Q ss_pred EEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccce
Q 022074 44 SLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 44 ~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
+..|.+ +|..+.+--..+.|..|+..++.... ..... ...+++..+++ .++.+..++. .++|...... ....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~-~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~~--~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG-PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGKV--TVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS-EEEEEEECTTS-EEEEEETTCE-EEEETTTTEE--EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC-CceEEEEccCC-EEEEEEcCce-EEEecCCCcE--EEEe
Confidence 467887 66666666678899999998886532 22222 56666653445 4445555444 4457642211 1111
Q ss_pred eec--c-cccCeEEEEeCCCCCEEEEEeCCC--------cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 123 VLM--G-HLEGITFIDSRGDGRYLISNGKDQ--------AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 123 ~~~--~-h~~~v~~~~~~~~~~~l~s~~~D~--------~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
... . .....+.+.+.++|++.++..... .|..++.. .
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~------------------------------- 124 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G------------------------------- 124 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-------------------------------
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-------------------------------
Confidence 111 1 223467788889998777765432 22222221 0
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE-EEeCCCeEEEEECCCC-e-E-----EEEeecCCCCeEEEEECCC
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSG-E-Q-----VAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-tg~~dg~i~iwd~~~~-~-~-----~~~~~~h~~~I~~v~~sp~ 263 (303)
.+... ..-+.......++++++.|+ +-+..+.|+.+++... . . ...+..-.+..-.+++..+
T Consensus 125 ----~~~~~------~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~ 194 (246)
T PF08450_consen 125 ----KVTVV------ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD 194 (246)
T ss_dssp ----EEEEE------EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT
T ss_pred ----eEEEE------ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC
Confidence 00000 00011112345788887664 6678899999998532 2 1 1122222234788999999
Q ss_pred CCeEEEEeCCCCEEEeecCCC
Q 022074 264 QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++.++.-..+.|.+++..+.
T Consensus 195 G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp S-EEEEEETTTEEEEEETTSC
T ss_pred CCEEEEEcCCCEEEEECCCcc
Confidence 999888888899999997643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00033 Score=57.36 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCeEEEE--eCCCCEEEeecCCCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPMLVSS--SWDGDVVRWEFPGNG 285 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~las~--s~Dg~i~~Wd~~~~~ 285 (303)
+.+..++++||.||-|+++-.+.+....+|+ .++.....+..+++++.+ |.|..++.|++....
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 4578889999999999999888888888888 899999999999999999 999999999987654
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00028 Score=39.84 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=29.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 67 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd 67 (303)
.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 46788899999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0055 Score=58.58 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=112.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.+.|++++ ++.++-|+-+|.|++++....- .+...|... ...+.+++|||.||+|.+-.+.. ...
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~----~~~ 105 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFT----DDE 105 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-------ccCCceEEEecCCCcEEEeeccC----Ccc
Confidence 46666666 6789999999999999875542 334444332 34589999999999999876532 111
Q ss_pred ceeecccccCeEEEEeCCC-----CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 121 AGVLMGHLEGITFIDSRGD-----GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 121 ~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
...+ .....+.+++++|+ .+.+++||.-| +.++.-+.+....+. ..+...+
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----------------------~l~~~eG 161 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----------------------VLSEGEG 161 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----------------------eeecCcc
Confidence 2222 23356777788776 56789998877 777754322110000 0000000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CeEEEEECCCCCeEEE
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDCSWHPSQPMLVS 269 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~------~I~~v~~sp~~~~las 269 (303)
. +..+.| .|.++|=++.+| |++||..+++.+..++-... .-..+.|.+..++++.
T Consensus 162 ~------------I~~i~W------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 162 P------------IHSIKW------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred c------------eEEEEe------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 1 111222 367888888777 89999999988877653322 2346778777765554
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
-+ -+|++..++
T Consensus 223 W~--d~v~i~~I~ 233 (846)
T KOG2066|consen 223 WG--DSVKICSIK 233 (846)
T ss_pred cC--CeEEEEEEe
Confidence 33 478887776
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.13 Score=47.54 Aligned_cols=172 Identities=15% Similarity=0.094 Sum_probs=88.5
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---CCeEEEEcCccccCCCccceeecccccCeEEEEeCC
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG 138 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 138 (303)
.|.+-|.+... ...+... +......|+|+..+.++..+. +..|.++|+.. ++ ...+....+......|+|
T Consensus 170 ~l~~~d~dg~~-~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t----g~-~~~lt~~~g~~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT----GK-KEKIASSQGMLVVSDVSK 242 (419)
T ss_pred eEEEECCCCCc-eeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC----Cc-EEEEecCCCcEEeeEECC
Confidence 34444444333 2223333 355677897653333443332 45788888642 22 222323344455667999
Q ss_pred CCCEEE-EEeCCC--cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 139 DGRYLI-SNGKDQ--AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 139 ~~~~l~-s~~~D~--~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
||+.++ +.+.++ .|.++|+..... ..++.... ....
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-----------------------------------~~LT~~~~------~d~~ 281 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-----------------------------------TQITNYPG------IDVN 281 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-----------------------------------EEcccCCC------ccCc
Confidence 997764 444444 444445432110 00000000 0123
Q ss_pred eeeeCCCeEEEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-------C--CEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-------G--DVVRWEFPG 283 (303)
Q Consensus 216 ~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-------g--~i~~Wd~~~ 283 (303)
|.|+|||+.|+-.+. .+ .|++.|+.+++...... ... ....|||||+.|+-.+.. + .|.+-|+.+
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 558888877666553 22 68888998776533221 111 124899999987766554 2 456666654
Q ss_pred C
Q 022074 284 N 284 (303)
Q Consensus 284 ~ 284 (303)
.
T Consensus 359 g 359 (419)
T PRK04043 359 D 359 (419)
T ss_pred C
Confidence 3
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0025 Score=57.08 Aligned_cols=216 Identities=16% Similarity=0.099 Sum_probs=130.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCeEEEEEccCCC----cEEEEecCCCeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG----HLIYSGSDDNLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----~~l~s~s~dg~v~lWd 110 (303)
..|-..|.+++.+-+|-.+.+.+. |..++++|+.+-....-+.-. ..-..+.|....+ .+.++.-.++.+.++|
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 477788999999999999999777 999999999876544212111 1111222311122 3344455789999999
Q ss_pred CccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 111 RRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.+... .+...+. -|..+|..+...+.+..+++....|-|.-|..... .......+.|.+.
T Consensus 129 ~~~d~---~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~-----~qfPr~~l~~~~K----------- 189 (558)
T KOG0882|consen 129 GFGDF---CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP-----FQFPRTNLNFELK----------- 189 (558)
T ss_pred CcCCc---CccceecccccCceEEEEeeccccceeeccccceeEeecCCCc-----ccCcccccccccc-----------
Confidence 76322 1222222 38889999999999999999999999999986531 0000001111111
Q ss_pred cCCCCCcceEEecccceeeeEEEe---eeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-----------------
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCH---FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK----------------- 249 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~----------------- 249 (303)
+. ..+....++. .+..|+|++..+++-+.|..|++++.++|+.+..+.
T Consensus 190 -~e-----------TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 190 -HE-----------TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred -cc-----------chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 00 0000001111 122367889999999999999999999986443332
Q ss_pred ---------------cCC-CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 ---------------YHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ---------------~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|. .+-+-+.|...+++|+-++.= -|++.++..+
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn 307 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN 307 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence 111 234456677788888877653 3556665543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.07 Score=44.66 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=79.3
Q ss_pred CCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec--ccccCeEEEE
Q 022074 60 DDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFID 135 (303)
Q Consensus 60 Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~--~h~~~v~~~~ 135 (303)
+|+|..||+.+|+..-+..-- .....+... .. +..+++++.++.+..||....+ ..-... +......
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~--- 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PD-GGRVYVASGDGNLYALDAKTGK----VLWRFDLPGPISGAP--- 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EE-TTEEEEEETTSEEEEEETTTSE----EEEEEECSSCGGSGE---
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-Ee-CCEEEEEcCCCEEEEEECCCCC----EEEEeecccccccee---
Confidence 689999999999876554321 111121122 22 4466677889999999975332 221111 1111111
Q ss_pred eCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 136 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 136 ~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
...+..++.+..|+.++.+|.+..+. .|.......++.. . ...
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~-----------~W~~~~~~~~~~~--~-----------------------~~~ 115 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKV-----------LWSIYLTSSPPAG--V-----------------------RSS 115 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCE-----------EEEEEE-SSCTCS--T-----------------------B--
T ss_pred -eecccccccccceeeeEecccCCcce-----------eeeeccccccccc--c-----------------------ccc
Confidence 11344666666888999999765332 1210000000000 0 000
Q ss_pred eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
.....++..++.+..++.|..+|.++|+.+-......
T Consensus 116 ~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 116 SSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 0011125567888889999999999999877766543
|
... |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.073 Score=49.24 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-----------CCeEEEEc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-----------DNLCKVWD 110 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-----------dg~v~lWd 110 (303)
-.=+.|||-|.+|++-=.-| |.+|--..-....+ ..| ..|..+.|+| +.++|+|=+. ...+++||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R-F~H-p~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR-FYH-PGVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh-ccC-CCceeeecCC-ccceEEEecCCccccCcccCCCceEEEEE
Confidence 44589999999999998888 88994433322222 234 4688888964 6778887553 25889999
Q ss_pred CccccCCCccceeeccccc--C-eEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLE--G-ITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~--~-v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
++.+ ...+.|....+ . -..+.|+.|+.|+|.-.. .+|.|++..+.
T Consensus 289 I~tG----~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf 336 (698)
T KOG2314|consen 289 IATG----LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF 336 (698)
T ss_pred cccc----chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce
Confidence 8743 33333322112 2 234578999999987665 67888886653
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=51.91 Aligned_cols=106 Identities=20% Similarity=0.325 Sum_probs=63.7
Q ss_pred CCEEEEeeCCCeEEEEECCCC-ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc-
Q 022074 51 GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL- 128 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~- 128 (303)
+..+++|+.||.|.+|....- ........-...+.+....-..+.+..++++||.+|.|... ..+..+...+|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----PNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----cCceeeeeccccC
Confidence 557999999999999977621 11111111112222322223345577789999999999864 334455555566
Q ss_pred cCeEEEEeCCCCCEEEEE--eCCCcEEEEEcccc
Q 022074 129 EGITFIDSRGDGRYLISN--GKDQAIKLWDIRKM 160 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l~s~--~~D~~v~lWdl~~~ 160 (303)
.++........++.++.. |.|..++.|++...
T Consensus 146 ~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 146 ESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 445444445555666666 67777777776643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.24 Score=42.16 Aligned_cols=210 Identities=12% Similarity=0.138 Sum_probs=105.4
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecc-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.|-...+..|+|+|+.+ .+++....+.|.-++++ |+...++.-. .+....+++. .++.++++.-.++.+.++++..
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE--
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEec
Confidence 34444599999999866 45556667778777764 5555544322 3567888885 4466666666689998887632
Q ss_pred ccCCCcc--ceee-----cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 114 LNVKGKP--AGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 114 ~~~~~~~--~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
....... ...+ ..+..++-.+++.+.++.|+.+-.....+++.++......... .... .
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~------~~~~--~------ 161 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF------VSDD--Q------ 161 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E------EEE---H------
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee------eccc--c------
Confidence 2111100 0111 1234458889999887777777777777787765421000000 0000 0
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC---------CCeEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRD 257 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~---------~~I~~ 257 (303)
.... ...........++.| ..+.+++-..++..|-..| .+|+.+..+.-.. .....
T Consensus 162 ---------~~~~--~~~~~~d~S~l~~~p---~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 162 ---------DLDD--DKLFVRDLSGLSYDP---RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp ---------HHH---HT--SS---EEEEET---TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred ---------cccc--ccceeccccceEEcC---CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence 0000 000000111111111 2467788888999999999 5677666554221 35789
Q ss_pred EEECCCCCeEEEEeCCCCEE
Q 022074 258 CSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~ 277 (303)
|+|.++|++.+++ +-+...
T Consensus 227 Ia~d~~G~LYIvs-EpNlfy 245 (248)
T PF06977_consen 227 IAFDPDGNLYIVS-EPNLFY 245 (248)
T ss_dssp EEE-TT--EEEEE-TTTEEE
T ss_pred EEECCCCCEEEEc-CCceEE
Confidence 9999999876665 433333
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.3 Score=43.17 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=39.8
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEE-eCCCCEEEeecCCC
Q 022074 233 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS-SWDGDVVRWEFPGN 284 (303)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~-s~Dg~i~~Wd~~~~ 284 (303)
.|+++|+++++.+.++.. ..++.+++.+.+.+ +|.+. ..++.|.+||....
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 388999999999988863 24688999999865 66554 45799999998754
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.084 Score=50.26 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=58.7
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc-------CCCcEEEEecCCCeEEEEcCcccc
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD-------ESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~-------~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.-+.++++|+++.+.+.+. +.+.....+..-+.. ..+.|+. ++++.... .++.|.+.|.+...
T Consensus 238 d~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~ 307 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAA 307 (635)
T ss_pred ccceECCCCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence 4567888888888776322 112211111111111 2222221 23544443 25689999975310
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccccc
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMS 161 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~ 161 (303)
..+.....+..-....+.++++|||++++.++ .+.+|-+.|+.+.+
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 01111222222334567888999999986555 69999999998754
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.16 Score=37.21 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=60.1
Q ss_pred eEEEEEc---CCC-CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFS---TDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s---~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
|.++++. .|| +.|++||.|..||+|+- .....++..+ +.|..++... ...|+.+-.+|+|-+|+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~----- 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRS----- 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCc-----
Confidence 4555555 343 47999999999999955 3444444433 5677777643 3689999999999998742
Q ss_pred Cccceeecccc-cCeEEEEeCCCC-CEEEEEeCCCcE
Q 022074 118 GKPAGVLMGHL-EGITFIDSRGDG-RYLISNGKDQAI 152 (303)
Q Consensus 118 ~~~~~~~~~h~-~~v~~~~~~~~~-~~l~s~~~D~~v 152 (303)
.+.-+.=..|. -++...++..+| ..|++|=.+|.|
T Consensus 72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 11111111111 122233344444 347777777765
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00072 Score=62.92 Aligned_cols=143 Identities=24% Similarity=0.321 Sum_probs=90.8
Q ss_pred EEEccCchhhccccccccccCcCc-ccccCCCcccceEEEEEcC-CCCEEEEee----CCCeEEEEECCCCce----EEE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDF-SAADDGGYSFGIFSLKFST-DGRELVAGS----SDDCIYVYDLEANKL----SLR 76 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~-~g~~l~sgs----~Dg~v~lwd~~~~~~----~~~ 76 (303)
|+-||+++ .+|.+--. +..+. +.+.-+||-.+..+++|++ |.+.||+|= .|..+.|||+.++-. ...
T Consensus 72 IlavG~at--G~I~l~s~-r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 72 ILAVGSAT--GNISLLSV-RHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred hhhhcccc--CceEEeec-CCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 45567666 55543322 11223 3555688999999999997 556666663 466799999988721 112
Q ss_pred Eec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 022074 77 ILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKL 154 (303)
Q Consensus 77 ~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~l 154 (303)
+.+ ...+.+.+||. .+.+++++|.....++++|+|....... .+ .+..+..+.+.| ..+|+++.. |+.|-+
T Consensus 149 fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~---sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAi 221 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVS---SV--NTKYVQGITVDPFSPNYFCSNS-DGDIAI 221 (783)
T ss_pred cccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhh---hh--hhhhcccceecCCCCCceeccc-cCceee
Confidence 222 34567788996 5567888999999999999872111111 11 122344455566 566777766 999999
Q ss_pred EE-ccc
Q 022074 155 WD-IRK 159 (303)
Q Consensus 155 Wd-l~~ 159 (303)
|| .+.
T Consensus 222 wD~~rn 227 (783)
T KOG1008|consen 222 WDTYRN 227 (783)
T ss_pred ccchhh
Confidence 99 443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.22 Score=50.30 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=70.6
Q ss_pred EEEEEcCCCCEEEEee----CC-CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---CCCeEEEEcCccc
Q 022074 43 FSLKFSTDGRELVAGS----SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVWDRRCL 114 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs----~D-g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s---~dg~v~lWd~~~~ 114 (303)
.+|+|..||+++++.. .+ .+|++||-+ |.+...-....+--.+++|-| .+..+++.. .|+.|.++.....
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCc
Confidence 4689999999999843 23 789999987 544322222233345889965 677877663 4667888874311
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEE---EeCCCcEEEEEcc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLIS---NGKDQAIKLWDIR 158 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~D~~v~lWdl~ 158 (303)
. .+.....+......+..+.|+.++..|+. ......|++|-+.
T Consensus 277 ~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 277 R-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred c-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 1 01001011111223788899999888876 5555669999764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.065 Score=52.69 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=77.8
Q ss_pred eCCCeEEEEECCCCceEEEEecccCC-eEEEEEccC----CCcEEEEecCCCeEEEEcCccccCCCccce-eec--cccc
Q 022074 58 SSDDCIYVYDLEANKLSLRILAHTSD-VNTVCFGDE----SGHLIYSGSDDNLCKVWDRRCLNVKGKPAG-VLM--GHLE 129 (303)
Q Consensus 58 s~Dg~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~-~~~--~h~~ 129 (303)
.....++-.|+.+|+.+..+..|... |..++-..+ .+...+.|-.+..+..||.|... .+.+. ... ....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--CceeeccccccccCC
Confidence 34577999999999999988887754 666653211 12344567667788899988422 11111 010 1223
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 130 GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 130 ~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
...|++...+| +||.|+.+|.||+||- ... . ....++++.-++..++...+++.+...|.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~-~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDR-LGK-R--AKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecc-cch-h--hhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 57788777777 7999999999999983 211 1 11223333334444444455555544444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.069 Score=52.51 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=45.5
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
...++|.|+.+|.||+||- .|...+ .+.+-..||..|+.+.||++|++.+ +.-|.+.+.
T Consensus 587 ~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 587 EDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3457999999999999994 444333 3556678999999999999987776 456666764
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=35.16 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=27.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLE 69 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~ 69 (303)
..|.+++|+|..+.+|.|+.||.|.|+.++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 459999999999999999999999999983
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.83 Score=41.70 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=41.2
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEECCCCCeEEEEeCCCCEEEeec
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~-v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+..++.++.||.+++.|..+|+.+...+.....+.+ -.+ .+..|..++.||.+..++.
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 345778899999999999999988776644333322 111 2446777788999998775
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.14 Score=47.13 Aligned_cols=184 Identities=23% Similarity=0.279 Sum_probs=101.9
Q ss_pred cceEEEEEcCCCCEEEEee---CC-CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE--cCcc
Q 022074 40 FGIFSLKFSTDGRELVAGS---SD-DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW--DRRC 113 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs---~D-g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW--d~~~ 113 (303)
..+..=.|+++++.++-.+ .. ..++++|+++++....+ ...+.-..-.|+|+..+++++...||...+| |+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence 3566678999988755543 22 35899999988754332 2333344557887766777888888877666 5432
Q ss_pred ccCCCccceeecccccCe-EEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 114 LNVKGKPAGVLMGHLEGI-TFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
. ....+. +..++ ..=+++|+|++++ +.++.|.-.||-+.......
T Consensus 272 ~-----~~~~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--------------------------- 318 (425)
T COG0823 272 K-----NLPRLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--------------------------- 318 (425)
T ss_pred C-----cceecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---------------------------
Confidence 1 122222 22222 2445889999876 44456666666443211000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~--i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
...+..+ .....|..||||++++..+. +|. |.+.|+.++..+..+. +..-...-.|.|+++.+.
T Consensus 319 ----~riT~~~--------~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 319 ----TRLTFSG--------GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred ----eEeeccC--------CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 0001111 11124667899999888774 344 6666666655433332 222334456777776544
Q ss_pred EE
Q 022074 269 SS 270 (303)
Q Consensus 269 s~ 270 (303)
..
T Consensus 386 ~~ 387 (425)
T COG0823 386 FS 387 (425)
T ss_pred Ee
Confidence 33
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.28 Score=35.95 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred eEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC---CCC-CeEEEEeCCCCEE
Q 022074 223 KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH---PSQ-PMLVSSSWDGDVV 277 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s---p~~-~~las~s~Dg~i~ 277 (303)
..++.|-++|+|-+|+-..+ +=..+.- ..+.++++. .|| +-|++|-.+|.+-
T Consensus 54 ~~F~Y~l~NGTVGvY~~~~R--lWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDRSQR--LWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeCcce--eeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55888999999999986432 2223322 224554433 333 3699998888775
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.066 Score=51.47 Aligned_cols=237 Identities=15% Similarity=0.140 Sum_probs=117.8
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCccccCC-Cccce
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVK-GKPAG 122 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~-~~~~~ 122 (303)
.+|+|.-+.++-...-.-+.|+|++-.+....+.-..+++.-+.+.|+ ..+.|++.-.||.+.+|-.+..... ..+..
T Consensus 236 faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~ 315 (1062)
T KOG1912|consen 236 FAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA 315 (1062)
T ss_pred hhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch
Confidence 566776665555556667999999887766554444455666666553 3567889999999999976532111 11111
Q ss_pred eecc-cccCeEEEE-----------eCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 123 VLMG-HLEGITFID-----------SRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 123 ~~~~-h~~~v~~~~-----------~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.+.- -.+.+.++. ..|. ...++.--.++.+-+|.++..+.......+........ .+......+
T Consensus 316 ~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf---~f~~~~~~v 392 (1062)
T KOG1912|consen 316 SLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF---DFNLSTKLV 392 (1062)
T ss_pred hhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc---cccCceeeh
Confidence 1110 011111111 1222 23344444577888999874322111111110000000 000000000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeee-----eC-------CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVY-----ST-------GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~-------~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 257 (303)
.-...-.+....+|..-..+.+.+..|.+ .| ...++|.|.+.|+|.++|+.++...+.+..|...|.+
T Consensus 393 ~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~Vkg 472 (1062)
T KOG1912|consen 393 GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKG 472 (1062)
T ss_pred hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceee
Confidence 00000000000011111111111111111 01 1347888999999999999999988899999999999
Q ss_pred EEECCCCCeEE---------EEeCCCCEEEeecCCC
Q 022074 258 CSWHPSQPMLV---------SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 258 v~~sp~~~~la---------s~s~Dg~i~~Wd~~~~ 284 (303)
+.|-...+++- +++--+.+.+=|+++.
T Consensus 473 leW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtG 508 (1062)
T KOG1912|consen 473 LEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTG 508 (1062)
T ss_pred eeeccceeEEEeeeccccccccceeeeEEEEEcccc
Confidence 99965444322 2222345556666544
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.062 Score=50.99 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.|.=-+++..+++++.|+.-|.+++|+-.++.....-. +..+.+.....+ ++..+++.|+..|.|.++-+.. .+...
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs-~~e~lvAagt~~g~V~v~ql~~-~~p~~ 112 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS-SVEYLVAAGTASGRVSVFQLNK-ELPRD 112 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEec-chhHhhhhhcCCceEEeehhhc-cCCCc
Confidence 34445566789999999999999999998886543222 122333444554 4577888888899998886432 11111
Q ss_pred c--ce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 120 P--AG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 120 ~--~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
. .. .-..|...|+++.|++++..+.+|..-|+|-+-.|..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 11 1123778899999999999999999999999876654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.017 Score=51.22 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=65.8
Q ss_pred EEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CC
Q 022074 63 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GR 141 (303)
Q Consensus 63 v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~ 141 (303)
++.++..+-+....+..|...|..++|+|.+.-++..++.+..+++.|++... ....+..| ..+++++|..+ .+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcc
Confidence 44444444333334556777899999987554478899999999999987332 23334445 67888888765 46
Q ss_pred EEEEEeCCCcEEEEEcccc
Q 022074 142 YLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 142 ~l~s~~~D~~v~lWdl~~~ 160 (303)
+|..|-..|.|.+||+|..
T Consensus 250 ~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred eeEEeccCceEEEEEccCC
Confidence 7888889999999999963
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.022 Score=53.25 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=57.3
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-EEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~-~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|.-.++|++.++|.+-++... .+.+-++..|..+++ +++|.|||+.||.|=.||+|++-|+...
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 44556789999999999999886 677888887888888 9999999999999999999999998643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.83 Score=41.75 Aligned_cols=227 Identities=15% Similarity=0.113 Sum_probs=108.1
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE-------------------------------------------EE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS-------------------------------------------LR 76 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~-------------------------------------------~~ 76 (303)
..|..++|+++...+++|...|.|-||.....+.. ..
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 46899999999889999999999988844221100 01
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc-ccee--ec-ccccCeEEEEeC-----CCC---CEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK-PAGV--LM-GHLEGITFIDSR-----GDG---RYLI 144 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~-~~~~--~~-~h~~~v~~~~~~-----~~~---~~l~ 144 (303)
+....+.|++++-+ +-+ .++.|.++|.+.+.|+|.....-. .+.. .. ...+.++++.|. .|+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 12224678888874 334 788899999999999974321100 0000 00 122345555543 333 5678
Q ss_pred EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEE----eeeeeeeC
Q 022074 145 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC----HFSPVYST 220 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~ 220 (303)
.|...|.+.+|.+-... ..... ..+. ........+ -..+..++........... ....-..
T Consensus 160 vGTn~G~v~~fkIlp~~-~g~f~-----v~~~--~~~~~~~~~------i~~I~~i~~~~G~~a~At~~~~~~l~~g~~- 224 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSS-NGRFS-----VQFA--GATTNHDSP------ILSIIPINADTGESALATISAMQGLSKGIS- 224 (395)
T ss_dssp EEETTSEEEEEEEEE-G-GG-EE-----EEEE--EEE--SS----------EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EEeCCCCEEEEEEecCC-CCceE-----EEEe--eccccCCCc------eEEEEEEECCCCCcccCchhHhhccccCCC-
Confidence 89999999999874211 01000 0000 000000000 0011111111000000000 0000000
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE-----CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW-----HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~-----sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...+++ ...+..|+++...+.+..............+.+ ...+..|++-..+|.++++-++.-
T Consensus 225 i~g~vV-vvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 225 IPGYVV-VVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp --EEEE-EE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cCcEEE-EEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 112344 344778999999887765443322223334555 235668999999999999999854
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.89 Score=38.54 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=44.6
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
-|++++.|...|.+++.+.++|.....+..- +.|.+-+....++.++..++.|++.+.-|.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 4778999999999999999999654333321 2333333334457788999999999887765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.033 Score=34.12 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.4
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
..+|..++|+|+..+||.+..||.+.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999974
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.1 Score=39.19 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=62.0
Q ss_pred EEEEcC-CCCEEEEeeCCCe-EEEEECCCCceEEEEecccCCeE--EEEEccCCCcEEEEec-----CCCeEEEEcCccc
Q 022074 44 SLKFST-DGRELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVN--TVCFGDESGHLIYSGS-----DDNLCKVWDRRCL 114 (303)
Q Consensus 44 ~l~~s~-~g~~l~sgs~Dg~-v~lwd~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~l~s~s-----~dg~v~lWd~~~~ 114 (303)
.++.+| .+..++.+-.-|+ ..+||..+++....+....+.-. --+|++ ++++|++.- ..|.|-+||...
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC-
Confidence 456677 4555666666664 57889999987665544332211 235754 577777653 367899999751
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEe
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 147 (303)
.-..+..+..|.-.-.-+.+.+||+.|+.+.
T Consensus 87 --~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 87 --GYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred --CcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 2234556666655555666788887776654
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.23 Score=45.98 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQV-AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~-~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
...++|.||.+|.||+||- .+... ..+.+-..+|..+..+.+|.+++..+ +..|.+-+...
T Consensus 440 ~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 3457999999999999997 45443 34677888999999999999887776 45666666543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.079 Score=49.73 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=58.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeE-EEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..+.-+.|+|.-..+|.+..+|.|.+..+. .+..-.+.-|+..++ +++|.| +++.++.|-+||+|++-|..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 358889999999999999999999998887 333444554777777 999975 49999999999999999975
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.068 Score=50.72 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=52.5
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeE---E--EEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQ---V--AAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~---~--~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|++..++|.|++.|.|.++-+..+.+ + ... +.|...|++++|++++..|.+|..-|++.+-.+..
T Consensus 84 vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 84 VSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 355677889999999999998866432 1 111 24778999999999999999999999999887764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.96 Score=43.36 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=51.3
Q ss_pred eeeCCCeEEEEEe-CCCeEEEEECCCCeE------------EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 217 VYSTGQKYIYTGS-HDSCVYVYDLVSGEQ------------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 217 ~~s~~~~~latg~-~dg~i~iwd~~~~~~------------~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+||||+++++++ .+.++.|.|+.+.+. +.+.+.-.+ ....+|.++|+...|--.|..+..|++..
T Consensus 327 ~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 327 NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4688999877765 699999999987653 344443233 45789999999999999999999999864
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.1 Score=41.68 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
|.+|...+.+ .|.+||+.+++.+..+... +|..+.||+++.++|-.+.+ ++.+.+.
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 4444444433 6888888888877777532 47888888888887777644 6666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.7 Score=42.62 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=74.6
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCC-----eEEEEECCCCc-----eE---EEEecc-----cCCeEEEEEccCCCcE
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDD-----CIYVYDLEANK-----LS---LRILAH-----TSDVNTVCFGDESGHL 96 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg-----~v~lwd~~~~~-----~~---~~~~~h-----~~~v~~l~~~~~~~~~ 96 (303)
.+|..++...-+..++ ++|++-+.|+ .++||+++.-+ .. .++..| ..+++.++.+ .+-+.
T Consensus 61 qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~ 139 (933)
T KOG2114|consen 61 QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKT 139 (933)
T ss_pred eecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-ccccE
Confidence 4566664444455555 5777766655 48999986531 11 133332 2467778885 44778
Q ss_pred EEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 97 l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
+++|-.||.|..+..+.....+........-.++|+.+.+..++...+-...-..|.+|.+.
T Consensus 140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 140 IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 89999999999986432111122122222234689999998888774444445778888775
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.31 Score=45.15 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=85.0
Q ss_pred CCcccceEE-EEEcCCCCE-EEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC------CcEEEEecCCCeEE
Q 022074 36 GGYSFGIFS-LKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES------GHLIYSGSDDNLCK 107 (303)
Q Consensus 36 ~~~~~~v~~-l~~s~~g~~-l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~------~~~l~s~s~dg~v~ 107 (303)
.||+..-.. +....+.+. +.++..-..++=.|+++|+.+..+.-+.. |+-+.+.|+. +..-+.|-.|..|.
T Consensus 329 ~g~S~~P~K~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vf 407 (644)
T KOG2395|consen 329 DGKSIDPHKAMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVF 407 (644)
T ss_pred CccccCcchhhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceE
Confidence 455533332 333334443 44455555688889999999888877766 6666665431 11223455577888
Q ss_pred EEcCccccCCCccceeecccc----cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHL----EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP 183 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (303)
-||.|..... .+...++|. ....|.+...+| +++.||.+|.|||||-- +. . ....++.+.-++..+...
T Consensus 408 riDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~-~--AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 408 RIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GR-R--AKTALPGLGDAIKHVDVT 480 (644)
T ss_pred EecccccCcc--eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hh-h--hhhcccccCCceeeEEee
Confidence 8998843321 233333442 235566655555 89999999999999852 11 1 112233333344444444
Q ss_pred CCCccccCCCC
Q 022074 184 PQARDLKHPCD 194 (303)
Q Consensus 184 ~~~~~~~~~~~ 194 (303)
.+++.+...|+
T Consensus 481 adGKwil~Tc~ 491 (644)
T KOG2395|consen 481 ADGKWILATCK 491 (644)
T ss_pred ccCcEEEEecc
Confidence 45555544444
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.71 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.7
Q ss_pred cccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc
Q 022074 127 HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 127 h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
..+.|..+..+|||+.|++...+|.|.+|++-.++
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 35678899999999999999999999999986544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.1 Score=38.27 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=36.0
Q ss_pred eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCC
Q 022074 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQP 265 (303)
Q Consensus 217 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~ 265 (303)
..||+++++|.-..+|.+.+.+.+-.+.+.++... ..+...+.|--+..
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 46889999999999999999987766666666544 34556777755543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.7 Score=37.18 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=95.0
Q ss_pred eEEEEECCCCceEEEEe-cccCCeEEEE---EccC---CCcEEEEecC----------CCeEEEEcCccccCCCccceee
Q 022074 62 CIYVYDLEANKLSLRIL-AHTSDVNTVC---FGDE---SGHLIYSGSD----------DNLCKVWDRRCLNVKGKPAGVL 124 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~-~h~~~v~~l~---~~~~---~~~~l~s~s~----------dg~v~lWd~~~~~~~~~~~~~~ 124 (303)
.|+|.|..+......+. ..+..+.+++ +..+ ..++++.|.. .|.+.++++.............
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888887776554322 2233445443 3211 1456665542 2889999875320001112211
Q ss_pred --cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEe
Q 022074 125 --MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201 (303)
Q Consensus 125 --~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (303)
....++|.++... .+ +|+.+ .++.|.+|++.... .. ..+.+.
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~--------------------------------~~~~~~ 127 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLL--------------------------------KKAFYD 127 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEE--------------------------------EEEEE-
T ss_pred EEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccch--------------------------------hhheec
Confidence 1235678887655 34 34333 34899999987533 00 011111
Q ss_pred cccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeEEEEee--cCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 202 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALK--YHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~--~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
...... .+ ...+.+++.|..-+.+.++..+. .+.+..+. ....+++++.|-++++.++.++.+|++.+
T Consensus 128 ~~~~i~-sl--------~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 128 SPFYIT-SL--------SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp BSSSEE-EE--------EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred ceEEEE-EE--------eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 111000 01 11145788898888888875443 33333332 23456899999877789999999999999
Q ss_pred eecCC
Q 022074 279 WEFPG 283 (303)
Q Consensus 279 Wd~~~ 283 (303)
+..+.
T Consensus 199 l~~~~ 203 (321)
T PF03178_consen 199 LRYNP 203 (321)
T ss_dssp EEE-S
T ss_pred EEECC
Confidence 99864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.034 Score=53.86 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=57.2
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++|..-.|+.|-+-|.+.+|...+.+.-.....|..+|..+.|||+|..|.|+..=|.+.+|...
T Consensus 67 WHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 67 WHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45666678889999999999988877766667899999999999999999999999999999865
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.17 Score=50.45 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=53.9
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEE---EEccCCCcEEEEecCCCeEEEEcC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV---CFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l---~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+||.+++|+.+|+.++.|=.+|.|.+||+.+++....+..|..++..+ .+.. .+..++++...|. +|.+
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 589999999999999999999999999999998877766666554444 3433 3457888888886 4653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=4.5 Score=36.86 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEeccc-C---------Ce-EEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHT-S---------DV-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~---------~v-~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
.+..+++++.+|.+.-+|.++|+..-+..-.. . .+ ..... .+..++.++.++.+.-+|.+..+...
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W 144 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAW 144 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCcc
Confidence 36678888889999999999987653322111 0 00 01111 13456677788999989876443322
Q ss_pred ccceeecccccCeEE-EEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 119 KPAGVLMGHLEGITF-IDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
+.. +.+ .+.+ ..+ .+..++.+..++.+..+|....+.
T Consensus 145 ~~~--~~~---~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 145 QTK--VAG---EALSRPVV--SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ccc--CCC---ceecCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 111 111 1110 001 133566667778888888765443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.87 E-value=3.4 Score=34.63 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC--CCeEEEEe
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS--QPMLVSSS 271 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~--~~~las~s 271 (303)
+|.+.++.-..++|...|..+|+.+.+++-....|++++|--. .-+.+|+.
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 4677777888899999999999999999989999999999543 22444444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.2 Score=43.68 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=46.1
Q ss_pred eeeCCCeEEEEE-----eCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCCeEEEEe
Q 022074 217 VYSTGQKYIYTG-----SHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 217 ~~s~~~~~latg-----~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~~las~s 271 (303)
+||+||++|++- ...|.|-|||.. +.+.+.++..|..-..++.+.||++.|+.+-
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 488999988884 457899999998 6677889998888889999999998777763
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=4.7 Score=38.76 Aligned_cols=60 Identities=7% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCeEEEEEeCC------CeEEEEECCC-C--eEEEEeecCCCCeEEEEECCCCCeEEEEeCCC--CEEEeecC
Q 022074 221 GQKYIYTGSHD------SCVYVYDLVS-G--EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFP 282 (303)
Q Consensus 221 ~~~~latg~~d------g~i~iwd~~~-~--~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg--~i~~Wd~~ 282 (303)
+++..+.||.+ ..+..||..+ . +.+..+.........+.+ ++.+.+.||.|+ .+..+|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 45666667643 2477899886 3 344444433333333334 788899999888 56666654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.5 Score=42.40 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=36.7
Q ss_pred eeeeeCCCeEEEEEeC------------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 215 SPVYSTGQKYIYTGSH------------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 215 ~~~~s~~~~~latg~~------------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.|.|+|+|+.+++... .+.+++.++..++... .....|.++.|||||..+|-.. ++.+.+
T Consensus 401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 4567777666655532 2344444554444322 2345799999999999777655 466655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.1 Score=41.39 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEc-cCCCcEEEEecCCCeEEEEcCc-----cc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRR-----CL 114 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~~~~l~s~s~dg~v~lWd~~-----~~ 114 (303)
..-+.-|.-++..++-+...++.|||.+.+.+..+. ....+.|.++.|. .++++.+++.+....|.++.-. ..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 444555666776666666667999999998765432 2456789999994 3568888899999999998531 01
Q ss_pred cCCCcccee--ecccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 115 NVKGKPAGV--LMGHL-EGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~--~~~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
.+...++.. +..|+ .+|....|.++|.+++.+| ..+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111112221 23344 4577777888886555443 67888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.12 E-value=6.3 Score=35.39 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=60.2
Q ss_pred cCCCCEEEEee---------CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC--
Q 022074 48 STDGRELVAGS---------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-- 116 (303)
Q Consensus 48 s~~g~~l~sgs---------~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~-- 116 (303)
|||+++++... ..+.+.|+|+.+++... +......+....|+|+ ++.++-.. ++.|.+++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEE
Confidence 57888777742 34578999999986543 3333567888899865 66766554 56888887532100
Q ss_pred ---CCccceeecccc---------cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 022074 117 ---KGKPAGVLMGHL---------EGITFIDSRGDGRYLISNG-KDQAIKLWDIR 158 (303)
Q Consensus 117 ---~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~ 158 (303)
.+ ....+.|-. +.-..+-|+||+++|+... .+..|+.+.+-
T Consensus 78 lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~ 131 (353)
T PF00930_consen 78 LTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP 131 (353)
T ss_dssp SES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred ecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence 01 001111111 1223566899999988765 45667776553
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.11 E-value=3 Score=38.20 Aligned_cols=117 Identities=20% Similarity=0.254 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCCEEEEe-eCCC----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC----------
Q 022074 39 SFGIFSLKFSTDGRELVAG-SSDD----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---------- 103 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sg-s~Dg----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---------- 103 (303)
...+....+||||+++|-+ +..| +++++|+++++........... ..+.|.++ ++.|+-...+
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d-~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDD-GKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTT-SSEEEEEECSTTTSS-CCGC
T ss_pred eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCC-CCEEEEEEeCcccccccCCC
Confidence 4445578999999988765 4444 4999999999765432222112 23899754 4554444322
Q ss_pred -CeEEEEcCccccCCCccceeecccccC--eEEEEeCCCCCEEEE-EeCCC---cEEEEEccc
Q 022074 104 -NLCKVWDRRCLNVKGKPAGVLMGHLEG--ITFIDSRGDGRYLIS-NGKDQ---AIKLWDIRK 159 (303)
Q Consensus 104 -g~v~lWd~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s-~~~D~---~v~lWdl~~ 159 (303)
..|+.|++... ...-...+.+.... ...+..+.++++++. .+... .+.+-|+..
T Consensus 201 ~~~v~~~~~gt~--~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 201 PRQVYRHKLGTP--QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp CEEEEEEETTS---GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred CcEEEEEECCCC--hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 23677776421 11112334443333 456778899998764 33333 355556654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.54 Score=47.13 Aligned_cols=102 Identities=21% Similarity=0.372 Sum_probs=67.5
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
.+..++.|+.-|.+-..|+.+.--. ..-..-.++|++++|+ .++..++.|-.+|-|.+||.. .+.+.+.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~----~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMH----RAKILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEcc----CCcceeeeeecC
Confidence 4567888888888988888654111 1111234689999995 568888889899999999964 334444444444
Q ss_pred cC---eEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 129 EG---ITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 129 ~~---v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.+ |..+....++..++++..-|+ +|.+.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 33 444444555667888777676 77654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.65 E-value=8.2 Score=35.54 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCCCCe--EEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV--RDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I--~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.++.++.++.+.||.-.+ ++=.-+....|| .-..|.....+|++-+.+|.+.+--+-
T Consensus 302 ~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred EEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeC
Confidence 488899999999996432 211111122333 233344456689999999999998763
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.60 E-value=6.9 Score=34.53 Aligned_cols=193 Identities=17% Similarity=0.241 Sum_probs=99.6
Q ss_pred eEEEEEcCC----CCEEEEeeC----------CCeEEEEECCCC-----ceEE-EEecccCCeEEEEEccCCCcEEEEec
Q 022074 42 IFSLKFSTD----GRELVAGSS----------DDCIYVYDLEAN-----KLSL-RILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 42 v~~l~~s~~----g~~l~sgs~----------Dg~v~lwd~~~~-----~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
+..+.+..+ ..++++|+. .|.|.+|++... ++.. ......++|.+++-. ++. ++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~ 105 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV 105 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee
Confidence 444555543 467887763 288999999884 2221 123456789998764 344 43333
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
++.|.+|++.... .-.+. .+......+.++... +++++.|...+.+.++..+.... .+
T Consensus 106 -g~~l~v~~l~~~~-~l~~~-~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~----~l------------- 163 (321)
T PF03178_consen 106 -GNKLYVYDLDNSK-TLLKK-AFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN----KL------------- 163 (321)
T ss_dssp -TTEEEEEEEETTS-SEEEE-EEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-----E-------------
T ss_pred -cCEEEEEEccCcc-cchhh-heecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC----EE-------------
Confidence 4699999875322 01111 121122245555443 55999999999999885543100 00
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-------Ce-EEE-Eeec-C
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-------GE-QVA-ALKY-H 251 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-------~~-~~~-~~~~-h 251 (303)
...........+..+ .+-.++..++.+..+|.+.++.... ++ .+. ...- .
T Consensus 164 ----------------~~va~d~~~~~v~~~----~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l 223 (321)
T PF03178_consen 164 ----------------ILVARDYQPRWVTAA----EFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL 223 (321)
T ss_dssp ----------------EEEEEESS-BEEEEE----EEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-
T ss_pred ----------------EEEEecCCCccEEEE----EEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC
Confidence 000000000011111 1222335789999999999998752 22 222 2222 2
Q ss_pred CCCeEEE---EECCC--C------CeEEEEeCCCCEEEe
Q 022074 252 TSPVRDC---SWHPS--Q------PMLVSSSWDGDVVRW 279 (303)
Q Consensus 252 ~~~I~~v---~~sp~--~------~~las~s~Dg~i~~W 279 (303)
...|+++ .+.|. + +.++-++.+|.|-.-
T Consensus 224 g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 224 GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 4578887 55562 2 248888889998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=92.57 E-value=8.2 Score=35.34 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=50.1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE--ec------ccCCeEEEEEcc----CCC---cEEEEecCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI--LA------HTSDVNTVCFGD----ESG---HLIYSGSDD 103 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~--~~------h~~~v~~l~~~~----~~~---~~l~s~s~d 103 (303)
..+|.+++.| |=.+++.|..+|++.|.|++....+... .. ....++++.|.. +++ -.+++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 6789999998 5669999999999999999777655431 12 123567777741 222 367889999
Q ss_pred CeEEEEcC
Q 022074 104 NLCKVWDR 111 (303)
Q Consensus 104 g~v~lWd~ 111 (303)
|.+.+|.+
T Consensus 165 G~v~~fkI 172 (395)
T PF08596_consen 165 GNVLTFKI 172 (395)
T ss_dssp SEEEEEEE
T ss_pred CCEEEEEE
Confidence 99999976
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.58 Score=27.90 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=27.5
Q ss_pred CCeEEEEECCCC---CeEEEEeCCCCEEEeecCCCCc
Q 022074 253 SPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGNGE 286 (303)
Q Consensus 253 ~~I~~v~~sp~~---~~las~s~Dg~i~~Wd~~~~~~ 286 (303)
+.|.+|+|||.. .+|+-+-.-+.+.++|...+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~ 37 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFM 37 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCcc
Confidence 368899999854 4899888889999999886443
|
It contains a characteristic DLL sequence motif. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.83 E-value=7.4 Score=33.19 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=26.7
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
..+++.++.+|+.|+..+..|.++...+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 44678899999999999999999877776654
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.81 E-value=9.1 Score=36.93 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceEEEEecccCCe--EEEEEccCCCcEEEEecCCCe-----EEEEcCccccC
Q 022074 50 DGRELVAGSSD------DCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNL-----CKVWDRRCLNV 116 (303)
Q Consensus 50 ~g~~l~sgs~D------g~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~dg~-----v~lWd~~~~~~ 116 (303)
++...++||.| .++..||..+++.. .+..-...- ..++. -++.+.+.|+.||. |-.||.+..
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~-~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~-- 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT-PVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTN-- 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCcee-ccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCC--
Confidence 56788889988 36788999888743 222211111 12222 23678888998875 445665422
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.................+.+ +|...+.||.|+.-
T Consensus 407 ~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSS 440 (571)
T ss_pred cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCc
Confidence 22222222211222222222 56777888876654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.72 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCeEEEEEccCCC--cEEEEecCCCeEEEEcCc
Q 022074 82 SDVNTVCFGDESG--HLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 82 ~~v~~l~~~~~~~--~~l~s~s~dg~v~lWd~~ 112 (303)
+.+.++.|+|... ++|+-+-..|.|.++|+|
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 3578999987655 788888889999999987
|
It contains a characteristic DLL sequence motif. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.6 Score=40.27 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCEEEEe-eCCCe--EEEEECCCCceEEEEecccCCeE-EEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFSTDGRELVAG-SSDDC--IYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg~--v~lwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
-..-+|+|||++|+-. ..||. |++.|+.++.... + .+..++. .=.|+|+....+++.+..|.=.+|-... .
T Consensus 240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~---~ 314 (425)
T COG0823 240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL---E 314 (425)
T ss_pred cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC---C
Confidence 3445799999976665 45665 5666887776432 2 3333333 3356666555666777777555553221 1
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
+.....+.-....-..-.++|+|.+|+-.+..
T Consensus 315 g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 315 GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCceeEeeccCCCCcCccCCCCCCEEEEEecc
Confidence 22222332222222245689999999877643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.77 Score=41.28 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=39.3
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+.+.++|+.+++.. .+......+....|||+|+.+|-.. ++.|.+++....
T Consensus 22 ~~~y~i~d~~~~~~~-~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEIT-PLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEEE-ESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ceeEEEEecCCCceE-ECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 457999999997643 3333367899999999999988886 689999987654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=90.30 E-value=5.6 Score=34.06 Aligned_cols=107 Identities=23% Similarity=0.366 Sum_probs=61.6
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc--e----
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA--G---- 122 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~--~---- 122 (303)
..++.|+.|+.+| +++++........++. +...|..+...++-+ .|+.-+ |++++++++.......... .
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 9999993333222222 223388888765544 444444 4999999986432221100 0
Q ss_pred ----eecccccCeEEEE--eCCCCCEEEEEeCCCcEEEEEccc
Q 022074 123 ----VLMGHLEGITFID--SRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 123 ----~~~~h~~~v~~~~--~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.-......+..++ -...+...+.....++|.+|....
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 0111223454444 233445556666667999998765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=12 Score=32.86 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=60.7
Q ss_pred cccccccCcCc-ccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 20 NVTEIHDGLDF-SAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
+|.+=.+|.+- .++. .+-...+..+..++||+++++++.-....-||.-.......-..-...|..+.|.++ +.+.+
T Consensus 125 ~iy~T~DgG~tW~~~~-~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~-~~lw~ 202 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVV-SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPD-GNLWM 202 (302)
T ss_dssp -EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TT-S-EEE
T ss_pred cEEEeCCCCCCeeEcc-cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCC-CCEEE
Confidence 45555555522 1222 344467899999999999988866665667765433222222334578999999754 55544
Q ss_pred EecCCCeEEEEcCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCC
Q 022074 99 SGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D 149 (303)
....|.++.=+......+. ++......-.-.+..+++.+++...++|+..
T Consensus 203 -~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 203 -LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred -EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 4478888876511000000 0111111112346788898888777776654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.26 E-value=2.1 Score=35.67 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=46.4
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEE-------ee-------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAA-------LK-------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~-------~~-------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++.+|++-..+|.+++||+.+++.+.. +. .....|..+..+.+|.-+++-+ +|....|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 577899999999999999998875321 11 2446799999999998777665 5778888753
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=18 Score=34.86 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=54.4
Q ss_pred cCCCCEEEEeeCCC------eEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCC------CeEEEEcCccc
Q 022074 48 STDGRELVAGSSDD------CIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVWDRRCL 114 (303)
Q Consensus 48 s~~g~~l~sgs~Dg------~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~d------g~v~lWd~~~~ 114 (303)
+..+..++.||.++ .+..||..++...... ..+...-.+++.. ++.+.++|+.| .++..||.+..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 34466778888774 6888999888533211 1222233444443 35788899988 35556776532
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.......+...........+ +|...+.||.|+.-
T Consensus 360 --~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~ 393 (571)
T KOG4441|consen 360 --QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEK 393 (571)
T ss_pred --ceeccCCccCccccceeEEE--CCEEEEEecccccc
Confidence 22223223222222222222 57778899998553
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.5 Score=24.45 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=26.7
Q ss_pred CCeEEEE-EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 221 GQKYIYT-GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 221 ~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
++++|.+ .-.+++|.++|..+++.+..+..- .....+.|+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 4454444 456899999999999888877653 333455553
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.73 E-value=16 Score=33.32 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=102.5
Q ss_pred ceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.-..++++++++.+.++.. ++++.+.|..+.+.......-..+ ..+++.+......++-..++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4567889999988888765 688999999988877664433334 778886553335555567889999986422211
Q ss_pred -CccceeecccccCeEEEEeCCCCCEEEEEeC-C--CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 118 -GKPAGVLMGHLEGITFIDSRGDGRYLISNGK-D--QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 118 -~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D--~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
....... .-...-..+.+.+++.++..... + +.+...|......... ..+..
T Consensus 196 ~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~---------------~~~~~-------- 251 (381)
T COG3391 196 RGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT---------------DLPVG-------- 251 (381)
T ss_pred cccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe---------------ccccc--------
Confidence 1100011 11122235567888886544333 2 4777777653211000 00000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEeecCC---CCeEEEEECCC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHT---SPVRDCSWHPS 263 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~h~---~~I~~v~~sp~ 263 (303)
. . .......+|+++++.... ..+.+.+.|..+........... ..+..+++.+.
T Consensus 252 -----~----------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 252 -----S----------G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred -----c----------C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 0 0 000112456777777763 45889999988877665544332 24566666554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=88.79 E-value=19 Score=33.13 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=26.4
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.+++..++.||+++++|--..+|.+.+..-
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 368999999999999999999999988763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=18 Score=32.83 Aligned_cols=198 Identities=15% Similarity=0.127 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec--CCCeEEEEcCccccCCC
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--~dg~v~lWd~~~~~~~~ 118 (303)
-..++.++.++.+++.. .++.|.+.|..+.+.......- .....+++.++.....++-. .++++.+.|.. ..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~----t~ 150 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA----TN 150 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCC----CC
Confidence 34577888888655544 4578999997777655433221 24567778665444544444 36788777743 22
Q ss_pred cccee-ecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 119 KPAGV-LMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 119 ~~~~~-~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
..... ..|- .+ ..+++.++|+.++ +...++.+.+.|........ .. + ...
T Consensus 151 ~~~~~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---------------~----------~~~ 202 (381)
T COG3391 151 KVTATIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---------------V----------GSL 202 (381)
T ss_pred eEEEEEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---------------c----------ccc
Confidence 22222 2222 22 6778899998654 45578999999854321110 00 0 000
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC---CCeEEEEECCCCeEEEE-ee-cCCCCeEEEEECCCCCeEEEE-
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQVAA-LK-YHTSPVRDCSWHPSQPMLVSS- 270 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~~~~-~~-~h~~~I~~v~~sp~~~~las~- 270 (303)
+. .....+...+++++.++..... ++.+...|..++..... .. +-. ....+..+|++.++-..
T Consensus 203 ~~----------~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 203 VG----------VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred cc----------cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEe
Confidence 00 0000111224566665444433 36899999988776544 21 222 45778999999976666
Q ss_pred eCCCCEEEeecCC
Q 022074 271 SWDGDVVRWEFPG 283 (303)
Q Consensus 271 s~Dg~i~~Wd~~~ 283 (303)
+..+.+.+-|...
T Consensus 272 ~~~~~V~vid~~~ 284 (381)
T COG3391 272 SQGGTVSVIDGAT 284 (381)
T ss_pred cCCCeEEEEeCCC
Confidence 3346777766543
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=88.06 E-value=16 Score=31.23 Aligned_cols=115 Identities=17% Similarity=0.111 Sum_probs=64.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--------------EecccCCeEEEE-EccCCCcEEEEecCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDN 104 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~--------------~~~h~~~v~~l~-~~~~~~~~l~s~s~dg 104 (303)
.+|..|...++-+.+++= .|+.++++++..-..... ......++...+ -....+...+......
T Consensus 36 ~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 349999999887766654 459999999876432221 122334566655 1122333444444455
Q ss_pred eEEEEcCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 105 LCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 105 ~v~lWd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.+.+|......... ...+.+. -.+.+..+.+. ++.++.|.. +...+.|+..
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~ 166 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-KGFYLIDLNT 166 (275)
T ss_pred EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-CceEEEecCC
Confidence 88888764321111 2222332 23566677776 445666654 5577888774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.8 Score=37.29 Aligned_cols=61 Identities=20% Similarity=0.363 Sum_probs=48.4
Q ss_pred eeeCCCeEEEEEeC-----CCeEEEEECCCC-eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 217 VYSTGQKYIYTGSH-----DSCVYVYDLVSG-EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 217 ~~s~~~~~latg~~-----dg~i~iwd~~~~-~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
+||+||.+|..--. -|.|-|||.+.+ +.+.++..|..-..++.|.+||+.|+.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 58899998876432 467999999855 45788889988889999999999998884 666655
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=87.63 E-value=19 Score=35.04 Aligned_cols=61 Identities=16% Similarity=0.346 Sum_probs=42.1
Q ss_pred eCCCeEEEEEeCCCeEEEEECC-----CC----eEEEEe--ecCC-CCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 219 STGQKYIYTGSHDSCVYVYDLV-----SG----EQVAAL--KYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 219 s~~~~~latg~~dg~i~iwd~~-----~~----~~~~~~--~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.|+++.+++-|-...|.++-.. +. ..+..+ ..|+ .+|.+..|-++|.+++.+| +.+.+++-
T Consensus 83 t~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 83 TPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 4677888888888888888542 11 122222 3344 5899999999999877775 67888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=87.06 E-value=14 Score=31.38 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=59.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC--C-ceE--EEEe------cccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N-KLS--LRIL------AHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~--~-~~~--~~~~------~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
.++.++-.++|++.++.++++-...-..||.++. + ... .... .....+..++++|..+++++-++.+..
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~ 194 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRL 194 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTE
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCe
Confidence 4667899999999988888887777777887754 2 111 1111 123467899998888899999999999
Q ss_pred EEEEcCccccCCCccceeec---c-c-----ccCeEEEEeCCCCCEEEEE
Q 022074 106 CKVWDRRCLNVKGKPAGVLM---G-H-----LEGITFIDSRGDGRYLISN 146 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~---~-h-----~~~v~~~~~~~~~~~l~s~ 146 (303)
+...|.. +++...+. + | -..--.+++.++|++.+++
T Consensus 195 l~~~d~~-----G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 195 LLELDRQ-----GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEE-TT-------EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred EEEECCC-----CCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 9998853 23222221 1 1 0134567788888655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.73 E-value=39 Score=34.35 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=73.6
Q ss_pred cceEEEEEcCC-CCEEEEee----------CCCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 40 FGIFSLKFSTD-GRELVAGS----------SDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~-g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
..+.++.|..| +.++++|. ..|.|.||....++....+..+ .+.|.++.. -+++++ ++-+.+|
T Consensus 775 ~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~--fngkll--A~In~~v 850 (1096)
T KOG1897|consen 775 LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE--FNGKLL--AGINQSV 850 (1096)
T ss_pred eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh--hCCeEE--EecCcEE
Confidence 36777778877 66788875 2456777776663222222222 244555543 235565 4445699
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
++|+.. ..+..+....|...+..+...-.|..++.|...+++.+-..+.+
T Consensus 851 rLye~t----~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 851 RLYEWT----TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred EEEEcc----ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 999975 22344455667788888888888889999999999888766543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=85.81 E-value=27 Score=31.70 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=33.1
Q ss_pred eCCCeEEEEEeCC----------------CeEEEEECCCCeEEEEeecCC---------CC--eEEEEECCCCCe-EEEE
Q 022074 219 STGQKYIYTGSHD----------------SCVYVYDLVSGEQVAALKYHT---------SP--VRDCSWHPSQPM-LVSS 270 (303)
Q Consensus 219 s~~~~~latg~~d----------------g~i~iwd~~~~~~~~~~~~h~---------~~--I~~v~~sp~~~~-las~ 270 (303)
++|+++++.-|.| -.|++++.+.++.. .+..|. .. =--..||||+++ |.++
T Consensus 291 s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 291 SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp -TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 4677766654443 26778888877642 122221 11 135689999985 7788
Q ss_pred eCCCCEEEeecC
Q 022074 271 SWDGDVVRWEFP 282 (303)
Q Consensus 271 s~Dg~i~~Wd~~ 282 (303)
...|...++=++
T Consensus 370 d~~G~~~vY~v~ 381 (386)
T PF14583_consen 370 DMEGPPAVYLVE 381 (386)
T ss_dssp -TTSS-EEEEEE
T ss_pred CCCCCccEEEEe
Confidence 888888777543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=84.98 E-value=32 Score=31.77 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=44.7
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..++..-+.||.+.+++-+.--....+.. ---..-+.|.+....+++++.+..+.-+..+.
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 45778889999999999776443334433 22234577888889999999999999888643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.55 E-value=17 Score=34.93 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=18.1
Q ss_pred CCeEEEEEeCCC--eEEEEECCCCe
Q 022074 221 GQKYIYTGSHDS--CVYVYDLVSGE 243 (303)
Q Consensus 221 ~~~~latg~~dg--~i~iwd~~~~~ 243 (303)
++++.++||.|+ .+..||+.+.+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccc
Confidence 578888999888 77888887654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=84.48 E-value=12 Score=34.49 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 79 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~ 79 (303)
.+.+|..+|+++++++...=|.|.|+|+.++.....+++
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 588899999999999888888999999999876544444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=84.23 E-value=5.9 Score=36.30 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=43.4
Q ss_pred eeCCCeEEEEE-eCC----CeEEEEECCCCeEEEE-eecCCCCeEEEEECCCCCeEEEEeCCC-----------CEEEee
Q 022074 218 YSTGQKYIYTG-SHD----SCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDG-----------DVVRWE 280 (303)
Q Consensus 218 ~s~~~~~latg-~~d----g~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp~~~~las~s~Dg-----------~i~~Wd 280 (303)
+||+++++|-+ +.. -.+++.|+.+|+.+.. +... ....+.|.+|+..|+-...|. .+++|+
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 67888887754 333 4499999999987643 2221 123499999988766555443 267777
Q ss_pred cCCCCc
Q 022074 281 FPGNGE 286 (303)
Q Consensus 281 ~~~~~~ 286 (303)
+....+
T Consensus 209 ~gt~~~ 214 (414)
T PF02897_consen 209 LGTPQS 214 (414)
T ss_dssp TTS-GG
T ss_pred CCCChH
Confidence 765533
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.64 E-value=6.3 Score=22.61 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCCCEEEEee-CCCeEEEEECCCCceEEEEe
Q 022074 49 TDGRELVAGS-SDDCIYVYDLEANKLSLRIL 78 (303)
Q Consensus 49 ~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~ 78 (303)
|++++|+++. .+++|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5778777765 47889999998887665544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=14 Score=35.74 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred eEEEEEcCCCCEEEEeeCC------------CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 42 IFSLKFSTDGRELVAGSSD------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~D------------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
...=+|+|||+.+.+.+.. +.+.+.+++.+.... ...+.|..+.|+++ +..++-.. ++.|.+=
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpD-G~RiA~i~-~g~v~Va 473 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRD-GVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCC-CCEEEEEE-CCEEEEE
Confidence 6677899998877776532 223333443332211 33467999999865 66555443 4666552
Q ss_pred ---cCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 110 ---DRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 110 ---d~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
......... .+.....+-.+.+..++|..++.+ +.+..+....+|.+
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v 524 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYV 524 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEE
Confidence 111110000 011111122233567888888874 45555555556654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.37 E-value=49 Score=32.64 Aligned_cols=32 Identities=6% Similarity=0.198 Sum_probs=27.4
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.||+.++|+--.++|.|.+-+.+..+++.+++
T Consensus 224 VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 224 VSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 57788999999999999999988877777765
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.20 E-value=8.7 Score=35.45 Aligned_cols=113 Identities=11% Similarity=0.151 Sum_probs=70.2
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-Eec---ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-~~~---h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
+++|.+|.||+|.+.+|+--.|.+|.+++...++.... ... .+..+-..+|.+. .-++-.+.. -+-+|-..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~-G~e~y~v~-- 140 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQ-GIEFYQVL-- 140 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecC-CeEEEEEc--
Confidence 34899999999999999999999999998744432211 111 2234777788643 334434433 34555422
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEE-e-CCCcEEEEEc
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-G-KDQAIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-~D~~v~lWdl 157 (303)
...+..+....|.-+|.+..+.++.+.++-+ + ..+++.=+.+
T Consensus 141 -pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 141 -PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred -hhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 2334455666788899998888887765433 3 3444443443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.12 E-value=10 Score=31.61 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=42.3
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE------e--------cccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI------L--------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~------~--------~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+.+..+++++++-+.+|.+++||+.+++....- . .....|..+..+ ++|.-+++-+ +|..+.|+
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCCEEEEEe-CCCEEEec
Confidence 335567899999999999999999998754211 1 233456666664 4455454443 46667776
Q ss_pred C
Q 022074 111 R 111 (303)
Q Consensus 111 ~ 111 (303)
.
T Consensus 94 ~ 94 (219)
T PF07569_consen 94 P 94 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.86 E-value=29 Score=34.26 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=46.7
Q ss_pred eeeeee--CCCeEEEEEeCCCeEEEEECCCCe-EEEEe--ecCCCCeEEEEECCCC---C---eEEEEeCCCCEEEeec
Q 022074 214 FSPVYS--TGQKYIYTGSHDSCVYVYDLVSGE-QVAAL--KYHTSPVRDCSWHPSQ---P---MLVSSSWDGDVVRWEF 281 (303)
Q Consensus 214 ~~~~~s--~~~~~latg~~dg~i~iwd~~~~~-~~~~~--~~h~~~I~~v~~sp~~---~---~las~s~Dg~i~~Wd~ 281 (303)
|..+++ ...+++|.++....|.||-....+ ..... ..|...|-+|+|-++. . .|++++-.|++.+|++
T Consensus 167 WGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 167 WGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 444444 556788888888889988654321 11111 1244568899997754 2 7999999999999998
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.63 E-value=10 Score=31.83 Aligned_cols=54 Identities=24% Similarity=0.443 Sum_probs=42.0
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 98 (303)
++...+|+..++.-+.++|..+|..+|+...++.-.+..++++||.-++-+.|.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~y 270 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILY 270 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEE
Confidence 334557877777778889999999999998888877889999999655444444
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.49 E-value=31 Score=36.09 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=34.3
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCccCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPP 290 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~~~~ 290 (303)
..+.+||..++.....+.|-+-++.|++..|++.++.+...+
T Consensus 239 ~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r 280 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR 280 (1311)
T ss_pred CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCcccee
Confidence 356789999999888889999999999999999776444443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.41 E-value=0.56 Score=46.24 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE-----------ECCCCCeEEEEeCCCCEEEeecCC
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS-----------WHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~-----------~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++..++..+-.++.|++..+..... ..+..|..++.+++ .||||..+|+++.||.++.|.+..
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 3446677777888888887754332 33455877666665 599999999999999999998653
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=81.42 E-value=7.7 Score=22.04 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=18.7
Q ss_pred CCCCeEEEEECCCCCeEE-EEeCC--CCEEEe
Q 022074 251 HTSPVRDCSWHPSQPMLV-SSSWD--GDVVRW 279 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~la-s~s~D--g~i~~W 279 (303)
....-....|||||+.|+ ++..+ |.-.+|
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677889999998655 44455 565555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=81.09 E-value=30 Score=28.65 Aligned_cols=48 Identities=23% Similarity=0.323 Sum_probs=31.4
Q ss_pred CEEEEeeCCCeEEEEECCCC--ceEEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 52 RELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
+.|..+.....|.+|++.+. +...++ ..-+.|..+.++ ..|++++|--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~-~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYS-EAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEec-cccceEEEEE
Confidence 44544455667999999832 233333 334788899996 4588988874
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=80.03 E-value=18 Score=35.87 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=53.5
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC----------c--eEEE-E--------ecccCCeEEEEEccC--C
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----------K--LSLR-I--------LAHTSDVNTVCFGDE--S 93 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----------~--~~~~-~--------~~h~~~v~~l~~~~~--~ 93 (303)
.-.+.|..|..|++|+.++..|..| |.|..+... + ..++ + ..+...|..+.|+|. +
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 4557899999999999999998887 666666431 1 1111 1 123346888999875 3
Q ss_pred CcEEEEecCCCeEEEEcCc
Q 022074 94 GHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~ 112 (303)
+..|+.=..|+++|+||+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCeEEEEecCCEEEEEecC
Confidence 5677777889999999985
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 303 | ||||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-17 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-17 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-17 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-17 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-17 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-17 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-17 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-17 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-17 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-17 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-17 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-17 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 4e-17 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-17 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-17 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-16 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-16 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-13 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 5e-10 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-09 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-04 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-07 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-07 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-07 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 4e-07 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-07 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-07 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-07 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-07 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-06 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 6e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 6e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 6e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 4e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 5e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 5e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 5e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-05 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 9e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 8e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 8e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 8e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 9e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-04 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 1e-04 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-04 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-04 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 4e-04 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 5e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 8e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 8e-04 |
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.95 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.92 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.92 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.91 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.91 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.91 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.88 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.87 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.78 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.76 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.75 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.75 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.73 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.73 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.73 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.7 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.68 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.68 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.67 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.66 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.66 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.63 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.63 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.53 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.52 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.52 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.51 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.5 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.45 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.45 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.45 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.43 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.41 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.41 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.37 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.35 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.34 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.34 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.31 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.31 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.29 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.27 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.27 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.26 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.24 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.23 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.2 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.2 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.2 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.16 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.15 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.14 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.13 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.09 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.07 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.06 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.06 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.04 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.03 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.02 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.0 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.97 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.97 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.97 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.92 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.86 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.81 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.78 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.75 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.71 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.71 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.69 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.67 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.65 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.63 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.63 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.58 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.54 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.41 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.39 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.36 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.27 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.27 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.22 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.19 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.18 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.16 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.14 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.05 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.99 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.92 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.9 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.88 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.86 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.81 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.79 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.76 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.72 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.7 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.63 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.59 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.5 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.25 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.19 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.18 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.16 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.11 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.96 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.93 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.84 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.78 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.72 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.7 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.63 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.59 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.48 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.45 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.35 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.27 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.21 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.94 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.93 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.92 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.82 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.67 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.58 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.46 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.23 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.21 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.01 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.18 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 93.9 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 93.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 93.73 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 93.61 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.15 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 93.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 92.95 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 92.85 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 92.77 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.73 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 92.48 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 92.1 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 91.49 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 91.43 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 91.18 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 90.53 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 90.38 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 90.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 89.99 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 89.58 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 89.57 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.81 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 87.47 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 87.33 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 87.24 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 87.14 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 86.96 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 86.56 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 84.89 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.6 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 84.35 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 84.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 84.13 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 82.16 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 81.4 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 81.32 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 80.91 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 80.4 |
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=264.51 Aligned_cols=228 Identities=23% Similarity=0.303 Sum_probs=181.7
Q ss_pred CchhhccccccccccCcCcc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
+|+.|..+.||++-+|.... .....||+.+|.+++|+|+|++|++|+.|++|+|||+.+++....+.+|...|.+++|
T Consensus 98 ~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence 45677889999987776443 1233699999999999999999999999999999999999988889999999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceee--cccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
+++...+|++++.|++|++||++.. ++...+ ..|...+.+++++++ +++|++|+.|++|++||++..+
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----- 248 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCP----KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----- 248 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSS----SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-------
T ss_pred cCCCCCceeeecccccccccccccc----ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-----
Confidence 8776678999999999999998632 233333 235556889999884 5788999999999999987532
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCCeEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~ 245 (303)
.+..+.+|..... ...|+|++ ++|++|+.|++|++||..+++.+
T Consensus 249 -----------------------------~~~~~~~h~~~v~------~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 249 -----------------------------CVLSSAVHSQCVT------GLVFSPHSVPFLASLSEDCSLAVLDSSLSELF 293 (344)
T ss_dssp -----------------------------CCEEEECCSSCEE------EEEECSSSSCCEEEEETTSCEEEECTTCCEEE
T ss_pred -----------------------------EEEEEcCCCCCEE------EEEEccCCCeEEEEEeCCCeEEEEECCCCcEE
Confidence 1233444432221 23467776 68999999999999999988754
Q ss_pred EEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 246 AALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 246 ~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
.+.+|.++|++++|||+++ +|+|+|.|++|++|+++..
T Consensus 294 -~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 294 -RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp -EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred -EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 5689999999999999987 5789999999999998753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=255.39 Aligned_cols=230 Identities=19% Similarity=0.272 Sum_probs=187.2
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|.... ...+|+.+|.++.|+|++++|++|+.|++|++||+.+++....+.+|.+.|.+++|+|
T Consensus 30 s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 107 (304)
T 2ynn_A 30 TTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP 107 (304)
T ss_dssp EEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC
Confidence 46678889999886665332 3368999999999999999999999999999999999998888999999999999975
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
++++|++|+.|++|++||++.. ......+.+|...|.+++|+| ++.+|++++.|++|++||++........
T Consensus 108 -~~~~l~sgs~D~~v~lWd~~~~---~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---- 179 (304)
T 2ynn_A 108 -TKPYVLSGSDDLTVKLWNWENN---WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL---- 179 (304)
T ss_dssp -SSSEEEEEETTSCEEEEEGGGT---TEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE----
T ss_pred -CCCEEEEECCCCeEEEEECCCC---cchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee----
Confidence 5789999999999999997621 133456789999999999998 6789999999999999998753221100
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
..++......+ .+. ..+++++|++|+.|++|++||+.+++.+..+.+
T Consensus 180 -----------------------------~~~~~~~v~~~--~~~--~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 180 -----------------------------TTGQERGVNYV--DYY--PLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp -----------------------------ECCCTTCEEEE--EEC--CSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred -----------------------------ccCCcCcEEEE--EEE--EcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence 00110001111 111 124778999999999999999999999999999
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|..+|.+++|+|++++|+|++.||+|++||....
T Consensus 227 h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999999999999999998643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=256.86 Aligned_cols=264 Identities=20% Similarity=0.233 Sum_probs=203.4
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
+=+|+.|..+.||+.-++.........||..+|.+++|++++..+++++.|++|+|||+.+++....+..|...+.+++|
T Consensus 51 l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~ 130 (321)
T 3ow8_A 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF 130 (321)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEE
T ss_pred EEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEE
Confidence 34678889999998754432112234799999999999999999999999999999999999988888888889999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+| ++++|++++.|+.|++||++. ......+..|...+.+++++|++++|++++.|+.|++||++........
T Consensus 131 sp-dg~~l~~g~~dg~v~i~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~--- 202 (321)
T 3ow8_A 131 SP-DSQYLATGTHVGKVNIFGVES----GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--- 202 (321)
T ss_dssp CT-TSSEEEEECTTSEEEEEETTT----CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---
T ss_pred CC-CCCEEEEEcCCCcEEEEEcCC----CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---
Confidence 75 588999999999999999862 3345566778889999999999999999999999999999764332211
Q ss_pred ccceeeeceeeeCCCCCccccCCC-CCcceEEecccc-eeeeEEE----eeeeeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSV-LRTLIRC----HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~----~~~~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
......+..+.+.|+...+.... +..+..++-... ....+.. .....|+|++++|++|+.|++|++||+.+++
T Consensus 203 -~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 203 -EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp -CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 11112233345555554443322 333443332211 0011111 1234588999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+..+.+|..+|++++|+|++++|++++.|++|++||.+
T Consensus 282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999964
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=266.12 Aligned_cols=259 Identities=20% Similarity=0.321 Sum_probs=196.7
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|... ....||..+|.+++|+|+|++|++|+.|++|+|||+.+++....+.+|...|.+++|+|
T Consensus 125 s~s~Dg~i~vwd~~~~~~~--~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p 202 (410)
T 1vyh_C 125 SASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202 (410)
T ss_dssp EEESSSCEEEEETTTCCCC--EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS
T ss_pred EEeCCCeEEEEECCCCcEE--EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC
Confidence 5677889999998776533 24479999999999999999999999999999999999888888889999999999975
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+++.|++|+.|++|++||++ .+.....+.+|...|..+.+++++.+|++++.|++|++||++.........
T Consensus 203 -~~~~l~s~s~D~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~---- 273 (410)
T 1vyh_C 203 -NGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---- 273 (410)
T ss_dssp -SSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC----
T ss_pred -CCCEEEEEeCCCeEEEEECC----CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec----
Confidence 57899999999999999986 344566788999999999999999999999999999999997643221111
Q ss_pred ceeeeceeeeCCCCC--------------------ccccC-CCCCcceEEecccce-eeeEEE----eeeeeeeCCCeEE
Q 022074 172 SYEWDYRWMDYPPQA--------------------RDLKH-PCDQSVATYKGHSVL-RTLIRC----HFSPVYSTGQKYI 225 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~--------------------~~~~~-~~~~~~~~~~~~~~~-~~~~~~----~~~~~~s~~~~~l 225 (303)
.....+..+.+.|.. ..+.. ..+..+..++-.... ...+.. .....|+|++++|
T Consensus 274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l 353 (410)
T 1vyh_C 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 353 (410)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCE
T ss_pred CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEE
Confidence 011111112222211 11111 112222222211100 000111 1234578899999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++|+.||.|++||+.+++.+..+.+|..+|++++|+|++++|+||+.|++|++|+.
T Consensus 354 ~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 354 LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=257.46 Aligned_cols=229 Identities=21% Similarity=0.225 Sum_probs=175.5
Q ss_pred chhhccccccccccCcCcc--cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 13 GTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
++.|..+.||++-+|.... .....||+.+|.+++|+|+|++|++|+.|++|+|||+.+++....+..|...|.+++|+
T Consensus 111 ~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 3457788999987776432 22336999999999999999999999999999999999999888899999999999998
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
++...++++++.|++|++||++..... ....+..|...+.+++|+|+ +.+|++|+.|+.|++||++....
T Consensus 191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~--~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~------- 261 (357)
T 4g56_B 191 PGKDTIFLSCGEDGRILLWDTRKPKPA--TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS------- 261 (357)
T ss_dssp TTCSSCEEEEETTSCEEECCTTSSSCB--CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-------
T ss_pred cCCCceeeeeccCCceEEEECCCCcee--eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-------
Confidence 766678999999999999998633211 11123356677999999987 56889999999999999875321
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+..+.++..... ...|+|++ ++||+|+.|++|+|||+++++.+..+
T Consensus 262 ---------------------------~~~~~~~~~~v~------~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~ 308 (357)
T 4g56_B 262 ---------------------------AQTSAVHSQNIT------GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308 (357)
T ss_dssp ---------------------------CEEECCCSSCEE------EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred ---------------------------eEEEeccceeEE------EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence 112222221111 22366665 68999999999999999999877655
Q ss_pred ecCCCCeEEEEECC-CCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHP-SQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp-~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|.++|++++||| ++++|+|+|.||+|++|+++..
T Consensus 309 -~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 309 -SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred -CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 7999999999999 7899999999999999999754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=254.97 Aligned_cols=227 Identities=21% Similarity=0.330 Sum_probs=185.1
Q ss_pred CchhhccccccccccCcCcc----cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFS----AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+.-.+.... .....+|...|.+++|+|+++.+++++.|++|++||+.+++....+.+|...|.++
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~ 202 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEE
Confidence 35567777777764432111 11225899999999999999999999999999999999999888899999999999
Q ss_pred EEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
.+++. +++.|++|+.||+|++||++ .+.....+.+|...|.+++++|++++|++++.|++|++||++......
T Consensus 203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-- 276 (354)
T 2pbi_B 203 DLAPSETGNTFVSGGCDKKAMVWDMR----SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-- 276 (354)
T ss_dssp EECCCSSCCEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECC----CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--
Confidence 99764 46899999999999999986 344566788999999999999999999999999999999997532110
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
.+..+.... ......|+|++++|++|+.|+.|++||+.+++.+.
T Consensus 277 --------------------------------~~~~~~~~~----~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 320 (354)
T 2pbi_B 277 --------------------------------IYSKESIIF----GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVS 320 (354)
T ss_dssp --------------------------------EECCTTCCS----CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred --------------------------------EEcCCCccc----ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEE
Confidence 000000000 00123478899999999999999999999999999
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+.+|..+|++++|||++++|+|++.|+++++|+
T Consensus 321 ~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 321 ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=251.06 Aligned_cols=257 Identities=18% Similarity=0.283 Sum_probs=197.5
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+..+|.... ...+|...|.+++|+|+|+++++|+.|+.|++|++.++. ....+.+|.+.|.++
T Consensus 72 s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~ 149 (340)
T 1got_B 72 SASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149 (340)
T ss_dssp EEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEE
T ss_pred EEeCCCcEEEEECCCCCcce--EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEE
Confidence 56778889999987776442 235789999999999999999999999999999998753 445677899999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
.|.++ ..+++++.|++|++||++ .+.....+.+|...|.+++++|+++++++++.|++|++||++........
T Consensus 150 ~~~~~--~~l~s~s~d~~i~~wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~- 222 (340)
T 1got_B 150 RFLDD--NQIVTSSGDTTCALWDIE----TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF- 222 (340)
T ss_dssp EEEET--TEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-
T ss_pred EECCC--CcEEEEECCCcEEEEECC----CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE-
Confidence 99753 358899999999999986 34456678899999999999999999999999999999999864322211
Q ss_pred cCccceeeeceeeeCCCCCccccCCC-CCcceEEecccceee-eE------EEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 168 LGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRT-LI------RCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~------~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
......+..+.+.|....+.... +..+..++-...... .. ....+..|+|++++|++|+.|+.|++||.
T Consensus 223 ---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 223 ---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence 11112223344555544443322 333444432211000 00 01223458899999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 240 ~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.+++.+..+.+|..+|++++|+|++++|+||+.|++|++||
T Consensus 300 ~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.64 Aligned_cols=233 Identities=21% Similarity=0.325 Sum_probs=182.4
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||..+|.+++|+|+++.+++|+.||+|+|||+.+++....+.+|.+.|.+++|++ ++++|++|+.|++|++||+.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~--- 180 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQ--- 180 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETT---
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCC---
Confidence 58999999999999999999999999999999999988888999999999999975 57899999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC-CC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (303)
.......+.+|...|.+++++|++++|++++.|++|++||++......... .....+..+.+.+....+... .+
T Consensus 181 -~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~----~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 181 -GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp -SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----CCCccEEEEEECCCCCEEEEEcCC
Confidence 234566778999999999999999999999999999999997643221111 111111222333333333221 12
Q ss_pred CcceE-----------EecccceeeeEEEeeeeeeeCC--------------------CeEEEEEeCCCeEEEEECCCCe
Q 022074 195 QSVAT-----------YKGHSVLRTLIRCHFSPVYSTG--------------------QKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 195 ~~~~~-----------~~~~~~~~~~~~~~~~~~~s~~--------------------~~~latg~~dg~i~iwd~~~~~ 243 (303)
..+.. +.+|...... ..|+|+ +.+|++|+.|+.|++||+.+++
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h~~~v~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREHRHVVEC------ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEE------EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEECCCCceeeEecCCCceEEE------EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 22222 2233222111 123332 6789999999999999999999
Q ss_pred EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+..+.+|..+|++++|+|++++|+|++.|++|++||+..
T Consensus 330 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 330 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN 369 (410)
T ss_dssp EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 9999999999999999999999999999999999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=256.86 Aligned_cols=237 Identities=22% Similarity=0.352 Sum_probs=187.3
Q ss_pred CchhhccccccccccCcC-----cccccCCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEE-----ecc
Q 022074 12 SGTMESLANVTEIHDGLD-----FSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI-----LAH 80 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~-----~~h 80 (303)
+|+.|..+.||++-++.. .......||+..|.++.|+|++ ..|++|+.|++|++||+.+++....+ .+|
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h 204 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH 204 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC
Confidence 466778888888754321 1123347999999999999974 57999999999999999999877655 578
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
...|.+++|++.++++|++|+.|++|++||++. .......+.+|...|.+++|+|++++|++++.|++|++||++..
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~---~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRI---TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTT---TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCC---CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence 899999999876789999999999999999862 23456678899999999999999999999999999999999753
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
........ .+... . .+ ........|+|++++|++|+.||.|++||..
T Consensus 282 ~~~~~~~~--------------~~~~~------~-------~~------~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 282 HQLQVYNR--------------EPDRN------D-------NE------LPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp EEEEEECC--------------CCSSS------C-------CS------SCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred cEEEEecc--------------ccccc------c-------cc------cCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 22111000 00000 0 00 0001233578899999999999999999999
Q ss_pred CCeEEEEe----ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 241 SGEQVAAL----KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 241 ~~~~~~~~----~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++.+..+ .+|..+|++++|||++++|+||+.|++|++|++.+.
T Consensus 329 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 329 LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 98887776 689999999999999999999999999999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=245.82 Aligned_cols=210 Identities=21% Similarity=0.310 Sum_probs=168.4
Q ss_pred CCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCC-----ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 35 DGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
..||+.+|.+++|+|++ +.|++|+.|++|++||+.+. .....+.+|...|.+++|++ ++++|++|+.|++|++
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRL 91 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEE
Confidence 36999999999999965 79999999999999998643 23456789999999999975 5889999999999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
||++ +++....+.+|...|.++++++++.+|++++.|++|++||++...
T Consensus 92 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~--------------------------- 140 (319)
T 3frx_A 92 WDVA----TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC--------------------------- 140 (319)
T ss_dssp EETT----TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE---------------------------
T ss_pred EECC----CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------------------------
Confidence 9986 345567788999999999999999999999999999999985311
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
+..+.+|......+..........++.++++++.|+.|++||+.+++....+.+|..+|++++|+|++++|+
T Consensus 141 --------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 141 --------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA 212 (319)
T ss_dssp --------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE
T ss_pred --------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE
Confidence 111222221111111111111223566899999999999999999998889999999999999999999999
Q ss_pred EEeCCCCEEEeecCCC
Q 022074 269 SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~~ 284 (303)
+++.||+|++||+...
T Consensus 213 s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAK 228 (319)
T ss_dssp EEETTCEEEEEETTTT
T ss_pred EEeCCCeEEEEECCCC
Confidence 9999999999998653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=242.24 Aligned_cols=213 Identities=19% Similarity=0.284 Sum_probs=165.6
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcC
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~ 111 (303)
..||+.+|.+++|+|+|++|++|+.|++|+|||+.++ +....+.+|.+.|.+++|+++ .+++|+||+.|++|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 4689999999999999999999999999999999753 456678899999999999754 4789999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
+.. .......+.+|...|.+++|+|+ +.+|++++.|++|++||++......
T Consensus 85 ~~~--~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------- 137 (297)
T 2pm7_B 85 ENG--RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------- 137 (297)
T ss_dssp SSS--CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC-------------------------
T ss_pred CCC--ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee-------------------------
Confidence 632 11234567789999999999997 8899999999999999987431100
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeee---------eeCCCeEEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPV---------YSTGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVR 256 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~~latg~~dg~i~iwd~~~~~----~~~~~~~h~~~I~ 256 (303)
...+.+|..... ...++|. ..+++++|++|+.|++|++||+.+++ .+..+.+|..+|.
T Consensus 138 -------~~~~~~h~~~v~--~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~ 208 (297)
T 2pm7_B 138 -------PIIIDAHAIGVN--SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (297)
T ss_dssp -------CEEEECCSSCEE--EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred -------eeeeecccCccc--eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceE
Confidence 001111111110 1111110 01236789999999999999998765 5667889999999
Q ss_pred EEEECCCC---CeEEEEeCCCCEEEeecCC
Q 022074 257 DCSWHPSQ---PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 257 ~v~~sp~~---~~las~s~Dg~i~~Wd~~~ 283 (303)
+++|+|++ ++|||++.|+++++||+..
T Consensus 209 ~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 209 DVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred EEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 99999995 7999999999999999865
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=241.94 Aligned_cols=258 Identities=24% Similarity=0.378 Sum_probs=196.1
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+..+|... ....+|..+|.+++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|++
T Consensus 40 s~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 117 (312)
T 4ery_A 40 SSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117 (312)
T ss_dssp EEETTSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EeeCCCeEEEEeCCCcccc--hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence 4567788899988666533 23479999999999999999999999999999999999998888999999999999975
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
++++|++++.|++|++||++ ..+....+..|...|.++.+++++++|++++.|+.|++||++............
T Consensus 118 -~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~- 191 (312)
T 4ery_A 118 -QSNLIVSGSFDESVRIWDVK----TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD- 191 (312)
T ss_dssp -SSSEEEEEETTSCEEEEETT----TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS-
T ss_pred -CCCEEEEEeCCCcEEEEECC----CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC-
Confidence 57899999999999999986 334566778899999999999999999999999999999998643221111000
Q ss_pred ceeeeceeeeCCCCCccccCCC-CCcceEEe-----------cccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPC-DQSVATYK-----------GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
...+..+.+.+....+.... +..+..++ ++........ .....+++++|++|+.||.|++||+
T Consensus 192 --~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 192 --NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp --CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCC---EEEECSSSCEEEECCTTSCEEEEET
T ss_pred --CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEE---EEEEeCCCcEEEEECCCCEEEEEEC
Confidence 11112234444444332221 22232222 2211111110 1112357889999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEECCCCCeEEEEe--CCCCEEEeecC
Q 022074 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSS--WDGDVVRWEFP 282 (303)
Q Consensus 240 ~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s--~Dg~i~~Wd~~ 282 (303)
.+++.+..+.+|..+|.+++|+|++++|++++ .|++|++|+..
T Consensus 267 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999999997 69999999964
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=248.24 Aligned_cols=204 Identities=21% Similarity=0.259 Sum_probs=163.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE----EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.|+.+|.+++|++++ .+++|+.||+|+|||+.+++... ...+|.+.|.+++|++ ++++|++|+.|++|++||++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECC
Confidence 456789999999985 68899999999999999886432 3458999999999975 58899999999999999986
Q ss_pred cccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.++....+.+|.+.|.+++|++++ .+|++++.|++|++||++..+.......
T Consensus 158 ----~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------------------- 210 (344)
T 4gqb_B 158 ----QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----------------------- 210 (344)
T ss_dssp ----TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------------
T ss_pred ----CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec-----------------------
Confidence 445677888999999999999987 5789999999999999975432111000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC-CeEEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVS 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~-~~las 269 (303)
..+... . .+..|+| ++++|++|+.||.|++||+++++.+..+.+|..+|++++|+|++ ++|||
T Consensus 211 ---------~~~~~~--~----~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~las 275 (344)
T 4gqb_B 211 ---------SAPGYL--P----TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275 (344)
T ss_dssp ------------CCC--E----EEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred ---------ceeecc--c----eeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEE
Confidence 000000 0 1122444 56789999999999999999999999999999999999999998 58999
Q ss_pred EeCCCCEEEeecCCC
Q 022074 270 SSWDGDVVRWEFPGN 284 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~~ 284 (303)
++.|++|++||....
T Consensus 276 gs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 276 LSEDCSLAVLDSSLS 290 (344)
T ss_dssp EETTSCEEEECTTCC
T ss_pred EeCCCeEEEEECCCC
Confidence 999999999998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=236.41 Aligned_cols=263 Identities=18% Similarity=0.203 Sum_probs=190.0
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
+|..+.||+.-+|.........+|...|.+++|+|+|+++++|+.||+|+|||+.+++....+.+|...+.++.+. +
T Consensus 43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~ 119 (318)
T 4ggc_A 43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---S 119 (318)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---T
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---C
Confidence 4788899998887644334457899999999999999999999999999999999999888899999988887763 4
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
+.+++++.++.+++|+... .......+.+|...+..+.+.++++++++++.|+.|++||++................
T Consensus 120 ~~l~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 120 YILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp TEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred CEEEEEecCCceEeeecCC---CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 6899999999999998642 2344566788999999999999999999999999999999986432211111000001
Q ss_pred eeceeeeCCCCCcccc----CCCCCcceEEecccceeeeEE----EeeeeeeeCCCeEEEEEe--CCCeEEEEECCCCeE
Q 022074 175 WDYRWMDYPPQARDLK----HPCDQSVATYKGHSVLRTLIR----CHFSPVYSTGQKYIYTGS--HDSCVYVYDLVSGEQ 244 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~ 244 (303)
..+....+.+....+. ...+..+..++.......... ......+++++..+++++ .|+.|++||+.++++
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 1111112222111110 011112222222111110000 011223567777766654 899999999999999
Q ss_pred EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.++++|.++|++++|||++++|||||.||+|++||+..
T Consensus 277 ~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999999999999999999999999999999853
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=241.97 Aligned_cols=261 Identities=18% Similarity=0.268 Sum_probs=189.6
Q ss_pred CchhhccccccccccCcCcc---cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
+|+.|..+.+|+.-.+.... .....||+.+|.+++|+|+|+++++|+.|++|+|||+.+++....+.+|...|.+++
T Consensus 35 s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~ 114 (319)
T 3frx_A 35 SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD 114 (319)
T ss_dssp EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEE
Confidence 56778888999875433211 112369999999999999999999999999999999999998888999999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC------CCEEEEEeCCCcEEEEEcccccC
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD------GRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
|++ ++++|++|+.|++|++||++ ......+.+|...|..+.+.|. +.++++++.|+.|++||++....
T Consensus 115 ~~~-~~~~l~s~s~D~~i~vwd~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 188 (319)
T 3frx_A 115 IDK-KASMIISGSRDKTIKVWTIK-----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188 (319)
T ss_dssp ECT-TSCEEEEEETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE
T ss_pred EcC-CCCEEEEEeCCCeEEEEECC-----CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh
Confidence 975 57899999999999999975 2345677889999999999874 45899999999999999975432
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEeccccee-eeEE---EeeeeeeeCCCeEEEEEeCCCeEEEE
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLR-TLIR---CHFSPVYSTGQKYIYTGSHDSCVYVY 237 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~---~~~~~~~s~~~~~latg~~dg~i~iw 237 (303)
... +......+..+.+.|+...+.... +..+..++-..... .... ......|+|++.++++++.+ .+++|
T Consensus 189 ~~~----~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~ 263 (319)
T 3frx_A 189 EAD----FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVF 263 (319)
T ss_dssp EEE----ECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEE
T ss_pred hee----ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEE
Confidence 111 111122233344555554443322 33444444322111 0111 12234577888888777644 48888
Q ss_pred ECCCCeEEEEee--------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 238 DLVSGEQVAALK--------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 238 d~~~~~~~~~~~--------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++..+..+..+. .|...+.+++||||+++|++|+.|++|++||+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 264 SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 887766655543 3456789999999999999999999999999753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=247.32 Aligned_cols=269 Identities=18% Similarity=0.213 Sum_probs=197.5
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~ 86 (303)
+|-||+ |..+.||+.-+|.-.......+|...|.+|+|+|+|++|++|+.||+|+|||+.+++....+.+|...+.+
T Consensus 118 ~lAvgl---d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 118 VLAVAL---DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp EEEEEE---TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred EEEEEe---CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 455664 56788888877764333344689999999999999999999999999999999999988889999999999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
+.++ ++.+++|+.|+.+++||.+. .......+.+|...+..+.+.+++.++++++.|+.+++||++........
T Consensus 195 ~s~~---~~~l~sgs~d~~i~~~d~~~---~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 195 LSWN---SYILSSGSRSGHIHHHDVRV---AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp EEEE---TTEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred EeeC---CCEEEEEeCCCceeEeeecc---cceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 9884 46999999999999999753 23445677899999999999999999999999999999998764322111
Q ss_pred ccCccceeeeceeeeCCCCCcccc-C---CCCCcceEEeccccee-eeEE---EeeeeeeeCCCeEEEEEe--CCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLK-H---PCDQSVATYKGHSVLR-TLIR---CHFSPVYSTGQKYIYTGS--HDSCVYV 236 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~---~~~~~~~s~~~~~latg~--~dg~i~i 236 (303)
..........+..+.+.+....+. . ..++.+..++-..... .... ...+..++++++.+++++ .|+.|++
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 000111111122233333222221 1 1233343333221110 0000 112234677788777754 7999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 237 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 237 wd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
||+.+++++..+.+|.++|++++||||+++||||+.|++|++||+...
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999999999999999999999999999999999999999998643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=242.39 Aligned_cols=208 Identities=20% Similarity=0.324 Sum_probs=175.8
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||..+|.+++|+|++++|++|+.||+|+|||+.++.....+..|...|.+++|+| +++++++|+.|+.|++||+...
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~ 129 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTC
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccC
Confidence 369999999999999999999999999999999999988888889999999999975 5889999999999999998643
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.........+.+|...|.++.+++++ .+++++.|++|++||++....
T Consensus 130 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~-------------------------------- 176 (340)
T 1got_B 130 EGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQ-------------------------------- 176 (340)
T ss_dssp SBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEE--------------------------------
T ss_pred CCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcE--------------------------------
Confidence 22223455678899999999998766 599999999999999864221
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
+..+.+|.... ....|+|+++++++|+.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++++.||
T Consensus 177 --~~~~~~h~~~v------~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 177 --TTTFTGHTGDV------MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp --EEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred --EEEEcCCCCce------EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 12233332211 1234678899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
++++||+...
T Consensus 249 ~v~iwd~~~~ 258 (340)
T 1got_B 249 TCRLFDLRAD 258 (340)
T ss_dssp CEEEEETTTT
T ss_pred cEEEEECCCC
Confidence 9999998754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=239.12 Aligned_cols=244 Identities=23% Similarity=0.292 Sum_probs=178.1
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEE
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lW 109 (303)
..||+.+|.+++|+|++++|++|+.||+|+|||+.++. ....+.+|...|.+++|++. ++++|++++.||+|++|
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 37999999999999999999999999999999998763 45566789999999999764 47899999999999999
Q ss_pred cCccccCCC-----ccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCcc---------ce
Q 022074 110 DRRCLNVKG-----KPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFR---------SY 173 (303)
Q Consensus 110 d~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~---------~~ 173 (303)
|++...... .....+.+|...|.++.++++ +.+|++++.|+.|++||++............. ..
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 986432111 335567789999999999999 99999999999999999986543322111000 00
Q ss_pred eeeceeeeCCCC---CccccCCC-CCc-------------ceEEecccceeeeEEEeeeeeeeCCC----eEEEEEeCCC
Q 022074 174 EWDYRWMDYPPQ---ARDLKHPC-DQS-------------VATYKGHSVLRTLIRCHFSPVYSTGQ----KYIYTGSHDS 232 (303)
Q Consensus 174 ~~~~~~~~~~~~---~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~~~----~~latg~~dg 232 (303)
......+.+.|. ...+.... +.. +..+.+|... .....|+|++ ++|++|+.||
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL------IRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC------EEEEEECCCSSCSSEEEEEEETTS
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc------eeEEEECCCCCCcceEEEEEcCCC
Confidence 000111122221 11111111 001 1111222111 1233477887 8999999999
Q ss_pred eEEEEECCCC----------------------------------------------eEEEEeecCCCCeEEEEECCCCCe
Q 022074 233 CVYVYDLVSG----------------------------------------------EQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 233 ~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
.|++||+.++ +.+..+.+|..+|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999764 567778899999999999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
|++++.||.|++|++...
T Consensus 321 l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EEEEETTSCEEEEEECTT
T ss_pred EEEecCCCcEEEEecCcC
Confidence 999999999999998753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=238.55 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=171.2
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||+.+|.+++|+|+|++|++|+.||+|+|||+.++.....+..|...|.+++|++ ++++|++|+.|++|++||++
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~-- 85 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN-- 85 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT--
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECC--
Confidence 368999999999999999999999999999999999988888889999999999975 57899999999999999975
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
+++....+.+|.+.|.+++++|++++|++++.|++|++||++....
T Consensus 86 --~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-------------------------------- 131 (304)
T 2ynn_A 86 --TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-------------------------------- 131 (304)
T ss_dssp --TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE--------------------------------
T ss_pred --CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc--------------------------------
Confidence 3455667889999999999999999999999999999999864210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECC--CCCeEEEE
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHP--SQPMLVSS 270 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp--~~~~las~ 270 (303)
....+.+|..... +..|+| ++.+|++|+.|++|++||+.+++....+ .+|...+..++|+| ++++|+++
T Consensus 132 -~~~~~~~h~~~v~------~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 132 -LEQTFEGHEHFVM------CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp -EEEEECCCCSCEE------EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred -hhhhhcccCCcEE------EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 0112233332111 233666 6789999999999999999887765544 45668899999987 67899999
Q ss_pred eCCCCEEEeecCCC
Q 022074 271 SWDGDVVRWEFPGN 284 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~ 284 (303)
+.|++|++||+...
T Consensus 205 s~D~~i~iWd~~~~ 218 (304)
T 2ynn_A 205 SDDLTIKIWDYQTK 218 (304)
T ss_dssp ETTSEEEEEETTTT
T ss_pred cCCCeEEEEeCCCC
Confidence 99999999998653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=236.47 Aligned_cols=234 Identities=17% Similarity=0.232 Sum_probs=178.0
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCC--CCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+.-.+.........||+.+|.+++|+++ |++|++|+.|++|+|||+.++. ....+..|...|.++
T Consensus 26 s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v 105 (297)
T 2pm7_B 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105 (297)
T ss_dssp EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE
T ss_pred EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE
Confidence 567888899998743321112334799999999999864 8999999999999999998874 344567899999999
Q ss_pred EEccCC-CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-------------CCEEEEEeCCCcEE
Q 022074 88 CFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-------------GRYLISNGKDQAIK 153 (303)
Q Consensus 88 ~~~~~~-~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-------------~~~l~s~~~D~~v~ 153 (303)
+|+|+. +.+|++++.|++|++||++... ......+.+|...|.+++|+|+ +++|++++.|++|+
T Consensus 106 ~~~p~~~g~~l~s~s~d~~v~~wd~~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~ 183 (297)
T 2pm7_B 106 QWAPHEYGPMLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183 (297)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEEBCSSS--CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEE
T ss_pred EeCcCCCCcEEEEEECCCcEEEEEecCCC--ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEE
Confidence 997642 6899999999999999986321 1123456789999999999986 56999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC---CeEEEEEeC
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSH 230 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~latg~~ 230 (303)
+||++....... ....+.+|..... ...|+|+ +++||+|+.
T Consensus 184 lwd~~~~~~~~~------------------------------~~~~l~~H~~~V~------~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 184 IWKYNSDAQTYV------------------------------LESTLEGHSDWVR------DVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEETTTTEEE------------------------------EEEEECCCSSCEE------EEEECCCCSSSEEEEEEET
T ss_pred EEEEcCCCceEE------------------------------EEEEecCCCCceE------EEEECCCCCCceEEEEEEC
Confidence 999874321000 1123344432221 2336666 489999999
Q ss_pred CCeEEEEECCCCe---EEEEe--ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 231 DSCVYVYDLVSGE---QVAAL--KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 231 dg~i~iwd~~~~~---~~~~~--~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
|++|++||+.+.+ ....+ ..|..+|++++|+|++++||+++.|+++++|+...
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 9999999997642 22233 46788999999999999999999999999999753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=244.45 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=167.9
Q ss_pred CCccc-ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE---EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSF-GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~-~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~---~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.||.. +|.+++|+|+|++|++|+.|++|+|||+.++..... ..+|...|.+++|+| ++++|++|+.|++|++||.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKK 90 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEc
Confidence 57877 899999999999999999999999999988764322 257999999999975 5889999999999999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
... .......+.+|...|.+++|+|++++|++++.|++|++||++.....
T Consensus 91 ~~~--~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~---------------------------- 140 (345)
T 3fm0_A 91 NQD--DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY---------------------------- 140 (345)
T ss_dssp CCC---EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE----------------------------
T ss_pred cCC--CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe----------------------------
Confidence 521 12335567899999999999999999999999999999998642110
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEECCCCCeEEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~~~~~~~h~~~I~~v~~sp~~~~las 269 (303)
..+..+.+|.... ....|+|++++|++|+.|+.|++||..+++ ....+.+|..+|++++|+|++++|++
T Consensus 141 ---~~~~~~~~h~~~v------~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 141 ---ECVSVLNSHTQDV------KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp ---EEEEEECCCCSCE------EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---EEEEEecCcCCCe------EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 0111222332111 123467889999999999999999998875 35678899999999999999999999
Q ss_pred EeCCCCEEEeec
Q 022074 270 SSWDGDVVRWEF 281 (303)
Q Consensus 270 ~s~Dg~i~~Wd~ 281 (303)
++.|++|++|+.
T Consensus 212 ~s~D~~v~iW~~ 223 (345)
T 3fm0_A 212 CSDDRTVRIWRQ 223 (345)
T ss_dssp EETTSCEEEEEE
T ss_pred EeCCCeEEEecc
Confidence 999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=241.04 Aligned_cols=210 Identities=20% Similarity=0.280 Sum_probs=174.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||+.+|.+++|+|++++|++|+.||+|+|||..++.....+..|...|.+++|+| +++.+++++.|+.+++|++....
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCT
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccc
Confidence 59999999999999999999999999999999999988888888999999999975 58899999999999999975321
Q ss_pred C--CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 116 V--KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 116 ~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
. .......+.+|...|.++.|++++.+|++++.|++|++||++...
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------------------------------- 187 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-------------------------------- 187 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--------------------------------
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--------------------------------
Confidence 1 112345667899999999999999999999999999999986422
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
.+..+.+|......+. +. +++++.+|++|+.||.|++||+++++.+..+.+|..+|++++|+|++++|++++.|
T Consensus 188 --~~~~~~~h~~~v~~~~--~~--~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 188 --LLQSFHGHGADVLCLD--LA--PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp --EEEEEECCSSCEEEEE--EC--CCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred --EEEEEcCCCCCeEEEE--EE--eCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 1223334432222211 11 12357899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeecCCC
Q 022074 274 GDVVRWEFPGN 284 (303)
Q Consensus 274 g~i~~Wd~~~~ 284 (303)
+++++||+...
T Consensus 262 ~~v~lwd~~~~ 272 (354)
T 2pbi_B 262 ATCRLYDLRAD 272 (354)
T ss_dssp SCEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 99999998654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=241.15 Aligned_cols=246 Identities=17% Similarity=0.211 Sum_probs=167.9
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd 110 (303)
...||+.+|.+++|+|+|++|++|+.|++|+|||+.++. ....+.+|.+.|.+++|+++ ++++|+||+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 447999999999999999999999999999999998875 34567899999999999754 478999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC---
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--- 185 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 185 (303)
++.. .......+.+|...|.+++|+|+ +.+|++++.|++|++||++...... ...........+..+.+.|.
T Consensus 88 ~~~~--~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENG--TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSS--CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCC--cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCC
Confidence 8632 11234467789999999999997 7899999999999999987531100 00000000001111111111
Q ss_pred --------------CccccCC-CCCcceEEecccc----eeeeEEEe----eeeeeeCCC----eEEEEEeCCCeEEEEE
Q 022074 186 --------------ARDLKHP-CDQSVATYKGHSV----LRTLIRCH----FSPVYSTGQ----KYIYTGSHDSCVYVYD 238 (303)
Q Consensus 186 --------------~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~----~~~~~s~~~----~~latg~~dg~i~iwd 238 (303)
...+... .+..+..++-... ....+..| ....|+|++ ++|++|+.|++|++||
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~ 244 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEE
Confidence 1122222 2333333322110 00011111 223466765 7899999999999999
Q ss_pred CCCC---e-EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 239 LVSG---E-QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 239 ~~~~---~-~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.+. + ....+..|..+|++++|+|++++||+++.|+++++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 8762 1 123456789999999999999999999999999999975
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=246.75 Aligned_cols=237 Identities=24% Similarity=0.385 Sum_probs=183.2
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||++-+|... ....||..+|.+++|+|++++|++|+.|++|++||+.+++....+ .+...+.+++|++
T Consensus 140 s~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~ 216 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSP 216 (393)
T ss_dssp EEETTSCEEEEETTTTEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECS
T ss_pred EEcCCCeEEEEECCCCcEE--EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-EcCCCcEEEEEEC
Confidence 4567888899988555422 234799999999999999999999999999999999998766544 4667899999987
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCcccee-------ecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV-------LMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~-------~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
.++++|++|+.|++|++||.+.. ..... ..+|...|.+++|++++++|++++.|++|++||++......
T Consensus 217 ~~~~~l~~~s~d~~v~iwd~~~~----~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 217 GDGKYIAAGSLDRAVRVWDSETG----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp TTCCEEEEEETTSCEEEEETTTC----CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCCEEEEEcCCCcEEEEECCCC----cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 67899999999999999997632 22222 25799999999999999999999999999999997532211
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
.... .........+.+|.... .+..+++++++|++|+.|+.|++||..+++.
T Consensus 293 ~~~~----------------------~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 293 DSKT----------------------PNSGTCEVTYIGHKDFV------LSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp ------------------------------CEEEEEECCSSCE------EEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred cccC----------------------CCCCcceEEEecccCcE------EEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 0000 00011223444444222 1234677899999999999999999999999
Q ss_pred EEEeecCCCCeEEEEECC------CCCeEEEEeCCCCEEEeecCC
Q 022074 245 VAALKYHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp------~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+..+.+|..+|.+++|++ ++++||||+.||+|++|++..
T Consensus 345 ~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999986 678999999999999999753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=242.74 Aligned_cols=245 Identities=19% Similarity=0.279 Sum_probs=180.2
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEEEecccCCeEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTVC 88 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~~~~h~~~v~~l~ 88 (303)
+|+.|..+.||+.-.+.........||+.+|.+++|+|+|++|++|+.|++|++||+.++.. ...+..|...|.+++
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 56778888888875443211234479999999999999999999999999999999987643 345678999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
|+| ++++|++++.|++|++||.+.. .......+.+|...|.+++|+|++++|++++.|++|++||++..........
T Consensus 158 ~~p-~~~~l~s~s~d~~i~~w~~~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 158 WHP-SQELLASASYDDTVKLYREEED--DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp ECS-SSSCEEEEETTSCEEEEEEETT--EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred ECC-CCCEEEEEeCCCcEEEEEecCC--CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence 975 5789999999999999997521 1123456789999999999999999999999999999999754221110000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEec-ccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe----
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---- 243 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---- 243 (303)
.... .....+..+.+ |... .....|++++..|++++.|+.|++|+...+.
T Consensus 235 ~~~~-------------------~~~~~~~~~~~~h~~~------v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 289 (345)
T 3fm0_A 235 SGSD-------------------PSWKCICTLSGFHSRT------IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289 (345)
T ss_dssp C----------------------CEEEEEEEECSSCSSC------EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred eccC-------------------CccceeEEecCCCCCc------EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence 0000 00011222222 1111 1234577889999999999999999986542
Q ss_pred ----E-EEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 244 ----Q-VAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ----~-~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
. ...+.+|..+|++++|+|+++ +|||++.||+|++|++...
T Consensus 290 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 1 223358999999999999985 9999999999999998754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=241.13 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=174.7
Q ss_pred ccCchhhccccccccccCc-Cccccc-CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-------CceEEEEecc
Q 022074 10 VGSGTMESLANVTEIHDGL-DFSAAD-DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-------NKLSLRILAH 80 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-------~~~~~~~~~h 80 (303)
+-+|+.|..+.+|+.-.+. .....- ..+|..+|.+++|+|++++|++|+.|++|+|||+.. ......+.+|
T Consensus 27 las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h 106 (330)
T 2hes_X 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH 106 (330)
T ss_dssp EEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--
T ss_pred EEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC
Confidence 3456778888999875543 221212 356999999999999999999999999999999853 2344567789
Q ss_pred cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 81 TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
...|.+++|+| ++++|++|+.|++|++||++...........+.+|...|.++.|+|++.+|++++.|++|++||++..
T Consensus 107 ~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999975 58899999999999999984222222345667899999999999999999999999999999997532
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC--CeEEEEEeCCCeEEEEE
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG--QKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~latg~~dg~i~iwd 238 (303)
.. ..+..+.+|..... ...|+|+ +.+|++|+.|++|++||
T Consensus 186 ~~--------------------------------~~~~~~~~h~~~v~------~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 186 DW--------------------------------ECVAVLNGHEGTVW------SSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp EE--------------------------------EEEEEECCCSSCEE------EEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred Ce--------------------------------eEEEEccCCCCcEE------EEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 10 01223344432221 2235666 67899999999999999
Q ss_pred CCCC--------eEEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 239 LVSG--------EQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 239 ~~~~--------~~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.++ ..+..+.. |..+|++++|++++ +|++++.||+|++|+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred ecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 8654 33445554 99999999999765 899999999999999754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=238.43 Aligned_cols=242 Identities=19% Similarity=0.255 Sum_probs=182.0
Q ss_pred cCCCcccceEEEEEcCC----CCEEEEeeCCCeEEEEECCCCceE--EEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 34 DDGGYSFGIFSLKFSTD----GRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~----g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
...||+.+|.+++|+++ ++.|++|+.|++|+|||+.++... ..+.+|...|.++.|++ ++.++++++.|++|+
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIR 105 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence 34799999999999975 678999999999999999877543 35778999999999975 577999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
+||++ .++....+..|...+..++|+|++++|++++.|+.|++||++.......... ....+..+.+.|+.+
T Consensus 106 lWd~~----~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~----~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 106 LWDLE----NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT----RGKFILSIAYSPDGK 177 (321)
T ss_dssp EEETT----TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC----SSSCEEEEEECTTSS
T ss_pred EEECC----CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC----CCceEEEEEECCCCC
Confidence 99986 3445566777888899999999999999999999999999976433221111 011122344455554
Q ss_pred cccCCC-CCcceEEecccce-eeeEEE----eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 188 DLKHPC-DQSVATYKGHSVL-RTLIRC----HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~~~-~~~~~~----~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
.+.... +..+..++-.... ...+.. .....|+|++++|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC
Confidence 443322 2233333221110 001111 1234588999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++++|++++.|+++++||+...
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999999999998643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=235.62 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=162.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEE-ec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRI-LA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~-~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
.||+.+|.+++|+++ +|++|+.|++|+|||+.++. ....+ .. |...|.+++|+| ++++|++|+.|++|++||.
T Consensus 11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~ 87 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAK 87 (330)
T ss_dssp ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEc
Confidence 589999999999987 99999999999999998753 33334 34 999999999976 5789999999999999997
Q ss_pred cccc---CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLN---VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
+... ........+.+|...|.+++|+|++++|++++.|++|++||++......
T Consensus 88 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~------------------------ 143 (330)
T 2hes_X 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY------------------------ 143 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC------------------------
T ss_pred ccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe------------------------
Confidence 4211 1223455678999999999999999999999999999999985311000
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC--eEEEEeecCCCCeEEEEECCC--C
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSWHPS--Q 264 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~--~~~~~~~~h~~~I~~v~~sp~--~ 264 (303)
..+..+.+|..... ...|+|++.+|++|+.|++|++||..++ +.+..+.+|..+|++++|+|+ +
T Consensus 144 ------~~~~~~~~h~~~v~------~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 211 (330)
T 2hes_X 144 ------ECISVLQEHSQDVK------HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV 211 (330)
T ss_dssp ------EEEEEECCCSSCEE------EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred ------EEEEEeccCCCceE------EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence 01223333432211 2346788999999999999999998776 567888999999999999999 6
Q ss_pred CeEEEEeCCCCEEEeecCC
Q 022074 265 PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~ 283 (303)
.+|+|++.|+++++||+..
T Consensus 212 ~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 212 FRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CEEEEEETTSCEEEEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC
Confidence 7899999999999999854
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=241.69 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=161.6
Q ss_pred CCcccceEEEEEcCCCCEEEE--eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~s--gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
..++..+.+++|||||+++++ ++.|++|+|||+++++....+ .|...|.+++|+| +++++++++.++.+.+|+..
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fsp-dg~~l~s~s~~~~~~~~~~~- 206 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFST-DGKVVAYITGSSLEVISTVT- 206 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECT-TSSEEEEECSSCEEEEETTT-
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEcc-CCceEEeccceeEEEEEecc-
Confidence 456677999999999998765 457999999999999877655 5778899999975 58899999866555554432
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC----cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~----~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
. .........+|...|.+++|+|++.++++++.|+ .+++||+........
T Consensus 207 ~--~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~------------------------ 260 (365)
T 4h5i_A 207 G--SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL------------------------ 260 (365)
T ss_dssp C--CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE------------------------
T ss_pred C--cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce------------------------
Confidence 1 1111223456888999999999999999999887 578888753211000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~la 268 (303)
....+.++.... .+..|+|++++||+|+.|++|+|||+.+++++..+ ++|..+|++++||||+++||
T Consensus 261 ------~~~~~~~~~~~V------~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 261 ------RSKQVTNRFKGI------TSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp ------EEEEEESSCSCE------EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred ------eeeeecCCCCCe------EeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 011122222111 23457899999999999999999999999998875 78999999999999999999
Q ss_pred EEeCCCCEEEeecCCCCccCCCCccc
Q 022074 269 SSSWDGDVVRWEFPGNGEAAPPLNKK 294 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~~~~~~~~~~~~ 294 (303)
|+|.|++|++||++.+......+.++
T Consensus 329 S~S~D~tvrvw~ip~~~~~~~s~~~~ 354 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLNYANYTSMKQK 354 (365)
T ss_dssp EEETTSEEEEEECCTTTTC-------
T ss_pred EEeCCCeEEEEEcCCCCcCccCcccc
Confidence 99999999999998776655555444
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-31 Score=229.53 Aligned_cols=205 Identities=22% Similarity=0.398 Sum_probs=173.7
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||..+|.+++|+|+|++|++|+.||+|++||+.+++....+.+|...|.+++|++ ++++|++++.|++|++||++
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~-- 95 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVS-- 95 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECC--
Confidence 369999999999999999999999999999999999988888889999999999975 57899999999999999986
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
..+....+.+|...|.++.+++++++|++++.|+.|++||++....
T Consensus 96 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------------- 141 (312)
T 4ery_A 96 --SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-------------------------------- 141 (312)
T ss_dssp --TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--------------------------------
T ss_pred --CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE--------------------------------
Confidence 3445667889999999999999999999999999999999874321
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWD 273 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~D 273 (303)
+..+.+|.... ....|++++++|++|+.||.|++||+.+++.+..+ ..+..++..++|+|++++|++++.|
T Consensus 142 --~~~~~~~~~~v------~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
T 4ery_A 142 --LKTLPAHSDPV------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213 (312)
T ss_dssp --EEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT
T ss_pred --EEEecCCCCcE------EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC
Confidence 11111221111 12346788999999999999999999999887665 4566789999999999999999999
Q ss_pred CCEEEeecCCC
Q 022074 274 GDVVRWEFPGN 284 (303)
Q Consensus 274 g~i~~Wd~~~~ 284 (303)
+.+++||+...
T Consensus 214 ~~i~iwd~~~~ 224 (312)
T 4ery_A 214 NTLKLWDYSKG 224 (312)
T ss_dssp TEEEEEETTTT
T ss_pred CeEEEEECCCC
Confidence 99999998653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=234.30 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=164.2
Q ss_pred CCCcccceEEEEE-----cC-CCCEEEEeeCCCeEEEEECCCC-------ceEEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 35 DGGYSFGIFSLKF-----ST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 35 ~~~~~~~v~~l~~-----s~-~g~~l~sgs~Dg~v~lwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
..||+.+|.+++| ++ ++++|++|+.|++|+|||+.++ .....+.+|...|.+++|++ ++.++++|+
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s 95 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSS 95 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEEEc
Confidence 3699999999999 76 8999999999999999999753 23456788999999999975 578999999
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
.|++|++||++ .++....+.+|...|.+++|+|++++|++++.|++|++||++......... .
T Consensus 96 ~D~~v~lwd~~----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~----------- 158 (343)
T 2xzm_R 96 WDKTLRLWDLR----TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE--K----------- 158 (343)
T ss_dssp TTSEEEEEETT----SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT--T-----------
T ss_pred CCCcEEEEECC----CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec--c-----------
Confidence 99999999986 344566788999999999999999999999999999999986311000000 0
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeee------eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP------VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
.+|...... ..++| ...+.+.+|++++.||.|++||. +++....+.+|..+|
T Consensus 159 -------------------~~~~~~v~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v 216 (343)
T 2xzm_R 159 -------------------ENHSDWVSC--VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNV 216 (343)
T ss_dssp -------------------TSCSSCEEE--EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCE
T ss_pred -------------------cCCCceeee--eeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccc
Confidence 000000000 11111 12234578999999999999994 567777889999999
Q ss_pred EEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 256 RDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++++|+|++++|++++.|+.|++||+.
T Consensus 217 ~~~~~s~~g~~l~sgs~dg~v~iwd~~ 243 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDKKLLIWDIL 243 (343)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEESS
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 999999999999999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=254.49 Aligned_cols=266 Identities=13% Similarity=0.182 Sum_probs=178.5
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC----CeEEEEECCCCceEEEEecccCCeEE
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILAHTSDVNT 86 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D----g~v~lwd~~~~~~~~~~~~h~~~v~~ 86 (303)
-+|+.|..+.||+.-+|.........+|+.+|.+++|+|+|+.|++++.+ ++|++||. +.....+.+|...|.+
T Consensus 75 asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~ 152 (611)
T 1nr0_A 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNS 152 (611)
T ss_dssp EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEE
T ss_pred EEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceE
Confidence 45677888999987555433223447899999999999999999998865 47888874 5455567899999999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
++|+|+....|++|+.|++|++||.+ ..+....+.+|...|.+++|+|++++|++++.|++|++||++........
T Consensus 153 v~f~p~~~~~l~s~s~D~~v~lwd~~----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~ 228 (611)
T 1nr0_A 153 VDFKPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228 (611)
T ss_dssp EEECSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECC----CCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence 99987655579999999999999965 33445678899999999999999999999999999999998653321111
Q ss_pred ccC---ccceeeeceeeeCCCCCccccCC-CCCcceEEeccccee-eeEEE-------eeeeeeeCCCeEEEEEeCCCeE
Q 022074 167 NLG---FRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSVLR-TLIRC-------HFSPVYSTGQKYIYTGSHDSCV 234 (303)
Q Consensus 167 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-------~~~~~~s~~~~~latg~~dg~i 234 (303)
... .......+..+.+.|+...+... .+..+..++-..... ..+.. .....+ +++.+++++.|+.+
T Consensus 229 ~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI 306 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred ccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcE
Confidence 000 00011112223333333322221 122233333211100 00000 000111 34445555555555
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 235 YVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++||..+++....+.+|..+|++++|+|++++|++++.|+++++||+...
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 55555555555566789999999999999999999999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=240.44 Aligned_cols=214 Identities=20% Similarity=0.283 Sum_probs=170.5
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||+.+|.+++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+| ++++|++|+.|++|++||+...
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCC
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCC
Confidence 479999999999999999999999999999999999998888999999999999975 5889999999999999998532
Q ss_pred cC---CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 115 NV---KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 115 ~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
.. .......+.+|...+.++.+.++ +..|++++.|++|++||++.......... .+
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~------------~~-------- 200 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS------------EF-------- 200 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC------------CS--------
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec------------cc--------
Confidence 11 12234567899999999999886 45799999999999999875322110000 00
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeee-CCCeEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYS-TGQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~latg~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
..+|... +.. ..++ +++.+|++|+.|++|++||++ .++.+..+.+|..+|++++|+|++++|+
T Consensus 201 ---------~~~h~~~--v~~----~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~ 265 (380)
T 3iz6_a 201 ---------PSGHTAD--VLS----LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265 (380)
T ss_dssp ---------SSSCCSC--EEE----EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEE
T ss_pred ---------CCCCccC--eEE----EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEE
Confidence 0111111 111 1122 367899999999999999997 4466788899999999999999999999
Q ss_pred EEeCCCCEEEeecCCC
Q 022074 269 SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~~ 284 (303)
|++.|+++++||+...
T Consensus 266 s~s~D~~i~lwd~~~~ 281 (380)
T 3iz6_a 266 TGSDDGTCRLFDMRTG 281 (380)
T ss_dssp EECSSSCEEEEETTTT
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999998753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=247.11 Aligned_cols=252 Identities=22% Similarity=0.385 Sum_probs=189.3
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
++.|..+.+|+. ++.+. ....+|..+|.+++|+|+|+++++|+.|++|++||. +++....+.+|...|.+++|+|
T Consensus 321 ~~~d~~i~~w~~-~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~- 395 (577)
T 2ymu_A 321 ASDDKTVKLWNR-NGQHL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP- 395 (577)
T ss_dssp EETTSCEEEEET-TSCEE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-
T ss_pred EeCCCeEEEEeC-CCCee--EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-
Confidence 455666777774 33322 234789999999999999999999999999999996 4556677889999999999975
Q ss_pred CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 93 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 93 ~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
++++|++++.|++|++||.. .+....+.+|...|.+++++|++++|++++.|++|++||+.... ... +..
T Consensus 396 dg~~l~~~~~d~~v~~~~~~-----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~-~~~----~~~ 465 (577)
T 2ymu_A 396 DGQTIASASDDKTVKLWNRN-----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQT----LTG 465 (577)
T ss_dssp TSSCEEEEETTSEEEEECTT-----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE-EEE----EEC
T ss_pred CCCEEEEEeCCCEEEEEeCC-----CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE-EEE----EcC
Confidence 57899999999999999953 34566788999999999999999999999999999999964311 100 111
Q ss_pred eeeeceeeeCCCCCccccCCC-CCcceEEecccceeeeEEEe----eeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE
Q 022074 173 YEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLIRCH----FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~ 247 (303)
....+..+.+.|+.+.+.... +..+..++........+..| ....|+|++++|++++.||.|++||. +++.+..
T Consensus 466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~ 544 (577)
T 2ymu_A 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT 544 (577)
T ss_dssp CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE
Confidence 122233445555555443322 22233332111111111111 23458899999999999999999996 6788899
Q ss_pred eecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 248 LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 248 ~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+.+|..+|++++|+||+++|+|++.|++|++||
T Consensus 545 ~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999999999999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-31 Score=233.55 Aligned_cols=262 Identities=15% Similarity=0.216 Sum_probs=186.6
Q ss_pred CchhhccccccccccCcCc----c-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEE
Q 022074 12 SGTMESLANVTEIHDGLDF----S-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 86 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~ 86 (303)
+|+.|..+.||+.-++... . .....||..+|.+++|+|++.++++|+.|++|+|||+.+++....+.+|...|.+
T Consensus 44 sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 123 (343)
T 2xzm_R 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYS 123 (343)
T ss_dssp EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEE
T ss_pred EEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEE
Confidence 6778888999988554321 0 1234799999999999999999999999999999999999988889999999999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC----------CEEEEEeCCCcEEEEE
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG----------RYLISNGKDQAIKLWD 156 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~~~D~~v~lWd 156 (303)
++|+| ++++|++++.|++|++||+... .........+|...|.++.++|++ .+|++++.|+.|++||
T Consensus 124 v~~sp-~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 200 (343)
T 2xzm_R 124 VAFSP-DNRQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200 (343)
T ss_dssp EEECS-STTEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE
T ss_pred EEECC-CCCEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc
Confidence 99975 5789999999999999997511 001111223688899999999886 7899999999999999
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEecccc--eeeeE---EEeeeeeeeCCCeEEEEEeC
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSV--LRTLI---RCHFSPVYSTGQKYIYTGSH 230 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~---~~~~~~~~s~~~~~latg~~ 230 (303)
.+... . ..+......+..+.+.|+.+.+.... +..+..++-... ..... .......|+|++++++ ++.
T Consensus 201 ~~~~~-~----~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~~ 274 (343)
T 2xzm_R 201 TNFQI-R----YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VGT 274 (343)
T ss_dssp TTTEE-E----EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EEE
T ss_pred CCCce-e----EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEE-EEC
Confidence 54211 0 00111112223344555555443322 333333332100 00000 0112345788888776 456
Q ss_pred CCeEEEEECCCCeEEE--Eee-----------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 231 DSCVYVYDLVSGEQVA--ALK-----------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~--~~~-----------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|+.|++||+.+++... .+. +|..+|++++|+|++++|++|+.||+|++|++.
T Consensus 275 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 275 DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEE
T ss_pred CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEE
Confidence 8889999998765432 443 688899999999999999999999999999975
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=250.36 Aligned_cols=230 Identities=13% Similarity=0.035 Sum_probs=176.0
Q ss_pred cCchhhccccccccccCcCcc--cccCCCcccceEEEEEcCC------CCEEEEeeCCCeEEEEECCCCce---------
Q 022074 11 GSGTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFSTD------GRELVAGSSDDCIYVYDLEANKL--------- 73 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~~------g~~l~sgs~Dg~v~lwd~~~~~~--------- 73 (303)
-+|+.|..+.||+.-+|.... .....+|...|.+++|+|+ +..|++++.||+|+|||+.++..
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 457888899999975443210 0123567889999999996 57999999999999999987632
Q ss_pred --EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEE--EeCCCC-CEEEEEeC
Q 022074 74 --SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFI--DSRGDG-RYLISNGK 148 (303)
Q Consensus 74 --~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~~~ 148 (303)
...+.+|...|.+++|+++ ..|++|+.||+|++||++.. ..+...+.+|...|.++ .+++++ .+|+|++.
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~ 331 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAV 331 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEET
T ss_pred CceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEEEecc
Confidence 1356789999999999753 58999999999999998632 13345578899999998 567877 89999999
Q ss_pred CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEE
Q 022074 149 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 228 (303)
Q Consensus 149 D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg 228 (303)
|++|+|||++..... ..+.++..... ..+..|+|+++.++++
T Consensus 332 D~tvklWD~~~~~~~----------------------------------~~~~~~~~~~~----v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 332 DGYFYIFNPKDIATT----------------------------------KTTVSRFRGSN----LVPVVYCPQIYSYIYS 373 (524)
T ss_dssp TSEEEEECGGGHHHH----------------------------------CEEEEECSCCS----CCCEEEETTTTEEEEE
T ss_pred CCeEEEEECCCCCcc----------------------------------cccccccccCc----ccceEeCCCcCeEEEe
Confidence 999999999753211 11111110000 0123478889999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 229 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.|++|++||++++..+..+.+|..+|++|+|||++++|+||+.|+++++||+..
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred CCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 9999999999999988788889999999999999999999999999999999753
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=248.83 Aligned_cols=218 Identities=16% Similarity=0.240 Sum_probs=175.5
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCc
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGH 95 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~ 95 (303)
.+.+|+.-+|... ....||+.+|.+++|+|+|++|++|+.|++|+|||+.+++ ....+..|.+.|.+++|+| +++
T Consensus 40 ~v~l~~~~~~~~~--~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~ 116 (611)
T 1nr0_A 40 SVYTVPVGSLTDT--EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESK 116 (611)
T ss_dssp EEEEEETTCSSCC--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSC
T ss_pred EEEEecCCCcccC--eEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC-CCC
Confidence 5566766444322 2447999999999999999999999999999999997543 3446778999999999976 477
Q ss_pred EEEEecCC----CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 96 LIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 96 ~l~s~s~d----g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
.|++++.+ +.|++||.. .....+.+|...|.+++|+|++. .|++++.|++|++||.+..+
T Consensus 117 ~l~~~~~~~~~~~~v~~wd~~------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--------- 181 (611)
T 1nr0_A 117 RIAAVGEGRERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------- 181 (611)
T ss_dssp EEEEEECCSSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---------
T ss_pred EEEEEECCCCceeEEEEeeCC------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---------
Confidence 88887764 489999842 23456789999999999999987 59999999999999975311
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK- 249 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~- 249 (303)
....+.+|.... .+..|+|++++|++|+.|++|++||..+++.+..+.
T Consensus 182 -------------------------~~~~l~~H~~~V------~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~ 230 (611)
T 1nr0_A 182 -------------------------FKSTFGEHTKFV------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 230 (611)
T ss_dssp -------------------------EEEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred -------------------------EeeeeccccCce------EEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecc
Confidence 122334443221 123478899999999999999999999999888884
Q ss_pred ------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 ------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|.++|++++|+|++++|+|++.|+++++||+...
T Consensus 231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~ 271 (611)
T 1nr0_A 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271 (611)
T ss_dssp TTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 79999999999999999999999999999998643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-31 Score=234.71 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=166.6
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeC------CCeEEEEECCCCce----EEEEecccCCeEEEEEccCCCcEEEEecCCC
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSS------DDCIYVYDLEANKL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDN 104 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~------Dg~v~lwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg 104 (303)
+.+|+..|.+++|||||++|++||. |++|++|+..++.. .....+|...|.+++|+|+ + .+++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~-~~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-K-GILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-T-EEEEEETTS
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-C-CEEEEECCC
Confidence 4689999999999999999999996 78899999877642 2345678899999999864 4 566788899
Q ss_pred eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 105 ~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
+|++||+..............+|...|.+++|+|++++|++++.|++|++||++......... .....+..+.+.+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~----~h~~~v~~v~~s~ 191 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN----AHSSEVNCVAACP 191 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC----CCSSCEEEEEECT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc----CCCCCEEEEEEcc
Confidence 999999864322222223455899999999999999999999999999999987643322211 1111112223333
Q ss_pred CCcc-c-cCCCCCcceEEecccc--eeee-----EEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 022074 185 QARD-L-KHPCDQSVATYKGHSV--LRTL-----IRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254 (303)
Q Consensus 185 ~~~~-~-~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~ 254 (303)
.... + ....+..+..++-... .... .....+..|+|+ +.+|++|+.|+.|++||+++++.+..+.+|..+
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~ 271 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQN 271 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSC
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecccee
Confidence 2221 1 1111222222221100 0000 001122346665 578999999999999999999999999999999
Q ss_pred eEEEEECCCC-CeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++++|+|++ ++|||++.|++|++||+...
T Consensus 272 v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 272 ITGLAYSYHSSPFLASISEDCTVAVLDADFS 302 (357)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999997 58999999999999998654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-31 Score=236.81 Aligned_cols=272 Identities=12% Similarity=0.189 Sum_probs=196.5
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC----CceEEEEecccCCeEEEEE
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA----NKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~----~~~~~~~~~h~~~v~~l~~ 89 (303)
+.|..+.||+.-++......-..+|..+|.+++|+|++++|++|+.||.|++||+.+ ......+..|...|.+++|
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEE
Confidence 667889999987765432333457999999999999999999999999999999987 3466678889999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccC-----CCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNV-----KGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~ 163 (303)
+++.+++|++++.|++|++||++.... .......+.+|...|.+++++++ +.+|++++.|+.|++||++.....
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 201 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV 201 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc
Confidence 876578999999999999999864321 01112234678899999999998 789999999999999999864332
Q ss_pred cccccCc--cceeeeceeeeCCCCCc-cccCCC-CC---cceEEecccc--eeeeEE-----EeeeeeeeC-CCeEEEEE
Q 022074 164 ASCNLGF--RSYEWDYRWMDYPPQAR-DLKHPC-DQ---SVATYKGHSV--LRTLIR-----CHFSPVYST-GQKYIYTG 228 (303)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~-~~---~~~~~~~~~~--~~~~~~-----~~~~~~~s~-~~~~latg 228 (303)
....... ......+..+.+.+... .+.... +. .+..++-... ...... ......|+| ++++|+++
T Consensus 202 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 202 IHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp EEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE
T ss_pred eEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE
Confidence 2221110 00011222333444321 121111 11 2333221110 000011 112345777 89999999
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC-CeEEEEeCCCCEEEeecCCCC
Q 022074 229 SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ-PMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~-~~las~s~Dg~i~~Wd~~~~~ 285 (303)
+.||.|++||+.+++.+..+..|..+|++++|+|++ .+|++++.|+.|++|++....
T Consensus 282 ~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred eCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 999999999999999999999999999999999999 799999999999999987553
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=234.89 Aligned_cols=264 Identities=20% Similarity=0.284 Sum_probs=195.1
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
++.|..+.||+.-+|... .....+|...|.+++|+|++++|++|+.||.|++||+.+++....+..|...|.+++|+
T Consensus 109 ~~~d~~v~lw~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-- 185 (401)
T 4aez_A 109 VALERNVYVWNADSGSVS-ALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN-- 185 (401)
T ss_dssp EEETTEEEEEETTTCCEE-EEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--
T ss_pred EECCCeEEEeeCCCCcEe-EeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--
Confidence 345677889988776643 33335699999999999999999999999999999999999888888999999999994
Q ss_pred CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 93 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 93 ~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
++.+++++.||.|++||++. .......+.+|...|.++++++++++|++++.|+.|++||++......... .
T Consensus 186 -~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----~ 257 (401)
T 4aez_A 186 -RHVLSSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT----N 257 (401)
T ss_dssp -TTEEEEEETTSEEEEEETTS---SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC----C
T ss_pred -CCEEEEEcCCCCEEEEeccc---CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec----C
Confidence 46999999999999999862 234466778899999999999999999999999999999998643222111 1
Q ss_pred eeeeceeeeCCCCCccccCC----CCCcceEEeccccee-eeEE---EeeeeeeeCCCeEEEE--EeCCCeEEEEECCCC
Q 022074 173 YEWDYRWMDYPPQARDLKHP----CDQSVATYKGHSVLR-TLIR---CHFSPVYSTGQKYIYT--GSHDSCVYVYDLVSG 242 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~---~~~~~~~s~~~~~lat--g~~dg~i~iwd~~~~ 242 (303)
....+..+.+.+....+... .+..+..++-..... .... ......|+++++++++ |+.||.|++||+.++
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc
Confidence 11122334444433322221 233344443221110 0010 1223457889999999 448999999999987
Q ss_pred eEE--EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCCcc
Q 022074 243 EQV--AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEA 287 (303)
Q Consensus 243 ~~~--~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~~~ 287 (303)
+.. ..+.+|..+|.+++|+|++++|++++.||.|++|++......
T Consensus 338 ~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 338 GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 654 446789999999999999999999999999999999765433
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-30 Score=233.18 Aligned_cols=200 Identities=28% Similarity=0.454 Sum_probs=162.3
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC------------------CeEEEEEccCCCcEEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS------------------DVNTVCFGDESGHLIY 98 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~~l~ 98 (303)
+|...|.+++|+|+|++|++|+ |++++||++.++.....+..|.. .|.+++|++ ++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCCEEE
Confidence 6999999999999999999976 67899999999987766655432 389999975 588999
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeece
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 178 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~ 178 (303)
+|+.|++|++||+. ..+....+.+|...|.+++|++++++|++++.|++|++||++.....
T Consensus 140 s~~~d~~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~--------------- 200 (393)
T 1erj_A 140 TGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS--------------- 200 (393)
T ss_dssp EEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---------------
T ss_pred EEcCCCeEEEEECC----CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeE---------------
Confidence 99999999999975 34456678899999999999999999999999999999998743211
Q ss_pred eeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEe-------ec
Q 022074 179 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAAL-------KY 250 (303)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~-------~~ 250 (303)
..+..+.. . ....++| ++++|++|+.|+.|++||..+++.+..+ .+
T Consensus 201 -------------------~~~~~~~~---v----~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 254 (393)
T 1erj_A 201 -------------------LTLSIEDG---V----TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254 (393)
T ss_dssp -------------------EEEECSSC---E----EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred -------------------EEEEcCCC---c----EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCC
Confidence 00110000 0 1123555 7899999999999999999998877666 57
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
|..+|++++|+|++++|++++.|++|++||+..
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 999999999999999999999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=220.72 Aligned_cols=120 Identities=22% Similarity=0.383 Sum_probs=101.6
Q ss_pred CCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCc-----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 35 DGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANK-----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
..||+.+|.+|+|+|+ +++|++||.|++|+|||+.++. ....+.+|...|.+++|++ ++++|++++.|+.|++
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRL 112 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceE
Confidence 4799999999999997 6899999999999999997653 3445778999999999975 5889999999999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
|+.. ..........+...+....+.+++.+|++++.|+.+++||++.
T Consensus 113 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 113 WDLT----TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp EETT----TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred Eeec----ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 9975 2233444556777788888999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=229.77 Aligned_cols=259 Identities=18% Similarity=0.273 Sum_probs=182.3
Q ss_pred cccccccccCcCcc---cccCCCcccceEEEEEcCC----CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 18 LANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTD----GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
.+.||+.-+|.... ......|...|.+++|+|+ |++|++|+.||+|++||+.+++....+.+|...|.+++|+
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 124 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence 57788876665322 2223458889999999998 6799999999999999999999888888999999999998
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceee---cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL---MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
|.++++|++++.||+|++||++. ......+ .+|...|.++++++++++|++++.|+.|++||++.........
T Consensus 125 ~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 200 (366)
T 3k26_A 125 PRDPNLLLSVSKDHALRLWNIQT----DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200 (366)
T ss_dssp SSCTTEEEEEETTSCEEEEETTT----TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred CCCCCEEEEEeCCCeEEEEEeec----CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc
Confidence 75788999999999999999862 3334444 6799999999999999999999999999999998532111000
Q ss_pred c-----------Cccc-------------eeeeceeeeCCCCCcccc-CCCCCcceEEecccce---------------e
Q 022074 168 L-----------GFRS-------------YEWDYRWMDYPPQARDLK-HPCDQSVATYKGHSVL---------------R 207 (303)
Q Consensus 168 ~-----------~~~~-------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------------~ 207 (303)
. .... ....+..+.+. ...+. ...+..+..++-.... .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 0 0000 00000000010 00111 1111222222211100 0
Q ss_pred eeEEE----eeeeeeeCC--CeEEEEEeCCCeEEEEECCCCe----EEEEeecC--CCCeEEEEECCCCCeEEEEeCCCC
Q 022074 208 TLIRC----HFSPVYSTG--QKYIYTGSHDSCVYVYDLVSGE----QVAALKYH--TSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 208 ~~~~~----~~~~~~s~~--~~~latg~~dg~i~iwd~~~~~----~~~~~~~h--~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..... .....|+++ +++|++|+.||.|++||+.+++ ....+..| ..+|++++|+|++++|++++.||.
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 00011 112346777 9999999999999999999875 44567777 799999999999999999999999
Q ss_pred EEEeecC
Q 022074 276 VVRWEFP 282 (303)
Q Consensus 276 i~~Wd~~ 282 (303)
|++||+.
T Consensus 359 i~iwd~~ 365 (366)
T 3k26_A 359 IWRWDRL 365 (366)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-29 Score=217.84 Aligned_cols=255 Identities=19% Similarity=0.272 Sum_probs=190.3
Q ss_pred hccccccccccCcCcc---cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEc
Q 022074 16 ESLANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~ 90 (303)
|..+.||+.-++.... .....+|..+|.+++|+|+++.+++++.||.|++||+.+++ ....+..|...|.+++|+
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ 150 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEEC
Confidence 6788899886665332 11123899999999999999999999999999999999887 455677899999999997
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+ +++.+++++.|+.|++||++ ..+....+.+|...+.++.+++++++|++++.|+.|++||++..........
T Consensus 151 ~-~~~~l~~~~~dg~v~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-- 223 (337)
T 1gxr_A 151 P-DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--
T ss_pred C-CCCEEEEEeCCCcEEEEeCC----CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--
Confidence 5 57899999999999999986 3345667778999999999999999999999999999999986433222111
Q ss_pred cceeeeceeeeCCCCCccccCCC-CCcceEEecccceeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~ 245 (303)
...+..+.+.+....+.... +..+..++-......... ......|+|++++|++++.||.|++||+.+++.+
T Consensus 224 ---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 224 ---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 11122233444443332221 223333322211111111 1123457889999999999999999999999877
Q ss_pred EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 246 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 246 ~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
... .|..+|++++|+|++++|++++.||.+++|++
T Consensus 301 ~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 301 FQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 554 58899999999999999999999999999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=240.41 Aligned_cols=203 Identities=13% Similarity=0.154 Sum_probs=157.5
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceE--EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+|+..|.||+|+| +++.||+|+.||+|+|||+.++... ..+.+|.+.|++++|+|.++++|+||+.||+|++||++
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~ 195 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK 195 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence 47888999999999 5678999999999999999877543 34568999999999987678899999999999999975
Q ss_pred cccCCCccceeec---ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 113 CLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 113 ~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.. ....+. .+...+.++++++++.+|++|+.|+.|++||++...
T Consensus 196 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~---------------------------- 242 (435)
T 4e54_B 196 GN-----ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE---------------------------- 242 (435)
T ss_dssp SC-----EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB----------------------------
T ss_pred CC-----ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce----------------------------
Confidence 21 122222 233457788999999999999999999999985311
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCCeEEE---EeecCCCCeEEEEECCCCC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQVA---ALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~---~~~~h~~~I~~v~~sp~~~ 265 (303)
+..+.+|..... +..|+|++ .++++|+.|+.|++||+.+++... ...+|..+|++++|+|+++
T Consensus 243 -------~~~~~~h~~~v~------~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 243 -------LWNLRMHKKKVT------HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp -------CCCSBCCSSCEE------EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred -------eEEEecccceEE------eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCC
Confidence 011122221111 12356655 478899999999999998765432 3357999999999999999
Q ss_pred eEEEEeCCCCEEEeecCCC
Q 022074 266 MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~~ 284 (303)
+|+|++.||+|++||+...
T Consensus 310 ~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp EEEEEESSSCEEEEESSSS
T ss_pred eeEEEcCCCEEEEEECCCC
Confidence 9999999999999998643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=237.47 Aligned_cols=235 Identities=24% Similarity=0.405 Sum_probs=174.4
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||+.+|.+|+|+|||++|++|+.|++|+|||. +++....+.+|...|.+++|+| ++++|++++.|++|++||..
T Consensus 13 ~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fsp-dg~~las~~~d~~i~vWd~~--- 87 (577)
T 2ymu_A 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN--- 87 (577)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT---
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECC---
Confidence 699999999999999999999999999999996 6677778999999999999976 58899999999999999953
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
++....+.+|...|.+++|+|++++|++++.|+.+++|+.......... .. ...+....+.+....+......
T Consensus 88 --~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 88 --GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT--GH---SSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp --SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEEC--CC---SSCEEEEEECTTSSCEEEEETT
T ss_pred --CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeecc--CC---CCceeeeeeecCCccceecccc
Confidence 4556778899999999999999999999999999999997542211000 00 0001111222222211111111
Q ss_pred c-ceEEecccceeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 196 S-VATYKGHSVLRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 196 ~-~~~~~~~~~~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
. ...+........... ......++++++++++++.|+.|++||. +++.+..+.+|..+|.+++|+|++++|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 239 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEE
Confidence 0 000000000000000 1122347789999999999999999996 567788899999999999999999999999
Q ss_pred eCCCCEEEeecCC
Q 022074 271 SWDGDVVRWEFPG 283 (303)
Q Consensus 271 s~Dg~i~~Wd~~~ 283 (303)
+.|+.+++|+..+
T Consensus 240 ~~d~~i~~w~~~~ 252 (577)
T 2ymu_A 240 SDDKTVKLWNRNG 252 (577)
T ss_dssp ETTSCEEEECTTS
T ss_pred eCCCEEEEEeCCC
Confidence 9999999999643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=224.29 Aligned_cols=233 Identities=17% Similarity=0.242 Sum_probs=180.4
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCC--CCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+.-.+.........+|..+|.+++|+++ +++|++|+.||+|++||+.+++ ....+..|...|.++
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 28 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 345678889998853222212344799999999999987 9999999999999999999986 555677799999999
Q ss_pred EEccCC-CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-------------CCCEEEEEeCCCcEE
Q 022074 88 CFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-------------DGRYLISNGKDQAIK 153 (303)
Q Consensus 88 ~~~~~~-~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s~~~D~~v~ 153 (303)
+|++.. +++|++++.|+.|++||++... ......+.+|...|.++.++| ++.+|++++.|+.|+
T Consensus 108 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 185 (379)
T 3jrp_A 108 QWAPHEYGPLLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185 (379)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEECCTTS--CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEE
T ss_pred EeCCCCCCCEEEEecCCCcEEEEecCCCC--ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEE
Confidence 997643 7899999999999999986332 123345668999999999999 689999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC---CeEEEEEeC
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSH 230 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~latg~~ 230 (303)
+||++....... ....+.+|.... ....|+|+ +++|++++.
T Consensus 186 i~d~~~~~~~~~------------------------------~~~~~~~h~~~v------~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 186 IWKYNSDAQTYV------------------------------LESTLEGHSDWV------RDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEETTTTEEE------------------------------EEEEECCCSSCE------EEEEECCCCSSSEEEEEEET
T ss_pred EEEecCCCccee------------------------------eEEEEecccCcE------eEEEECCCCCCCCeEEEEeC
Confidence 999975321100 111222332211 12347788 899999999
Q ss_pred CCeEEEEECCCCe---EEEEe--ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 231 DSCVYVYDLVSGE---QVAAL--KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 231 dg~i~iwd~~~~~---~~~~~--~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
||.|++||+.+++ ....+ ..|..+|++++|+|++++|++++.||.+++|++.
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 9999999998864 22222 3488999999999999999999999999999986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=233.97 Aligned_cols=252 Identities=10% Similarity=0.079 Sum_probs=174.7
Q ss_pred EccCchhhccccccccccCcCcc---cccCCCcccceEEEEEcC--------CCCEEEEeeCCCeEEEEECCCCceEEEE
Q 022074 9 DVGSGTMESLANVTEIHDGLDFS---AADDGGYSFGIFSLKFST--------DGRELVAGSSDDCIYVYDLEANKLSLRI 77 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~--------~g~~l~sgs~Dg~v~lwd~~~~~~~~~~ 77 (303)
.+-+|+.|..+.+|+.-+|.... .....||+..|.+++|+| ||++|++||.|++|+|||+.++.....+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 35578888999999886664221 234589999999999998 8999999999999999999988877788
Q ss_pred ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc---------------------cceeecccccCeEEEEe
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK---------------------PAGVLMGHLEGITFIDS 136 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~ 136 (303)
..|...|.+++|+|++.++|++++.|++|++||++....... ......+|...+..+.+
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~ 262 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRW 262 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEE
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeee
Confidence 899999999999876667899999999999999863321110 00112467778888887
Q ss_pred C-CCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 137 R-GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 137 ~-~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
. +++.++++++.|+++++||++......... ..........+.+.. ....... ....+.+.
T Consensus 263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~----~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~ 324 (393)
T 4gq1_A 263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEIS----DSTMKLGPKNLLPNV-----------QGISLFP---SLLGACPH 324 (393)
T ss_dssp ETTTTCEEEEECTTSEEEEEEC-----------------------CCSCSE-----------EEECSSC---CSSCCEEC
T ss_pred ecCCCCEEEEEeCCCCEEEEECccCCCCceEe----eecCccccEEEcccc-----------ccccccC---cceeEEEc
Confidence 5 789999999999999999987543211110 000000000011110 0000000 01111112
Q ss_pred eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+ ..++.++++|+.||.|++||..+++.+..+..|..+|++++|||||++||++++|| +.+|.+
T Consensus 325 ~--~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 P--RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp S--SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred c--CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 1 24677888899999999999999988888888999999999999999999999776 555654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=231.55 Aligned_cols=244 Identities=15% Similarity=0.120 Sum_probs=175.0
Q ss_pred CchhhccccccccccCc-CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+.-++. +. .....+|+.+|.+++|+|++++|++++.|++|++||+.++. ....+..|...|.++
T Consensus 28 ~~~~d~~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~ 106 (377)
T 3dwl_C 28 TTTATNQVELYEQDGNGWKH-ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV 106 (377)
T ss_dssp CCCSSSCBCEEEEETTEEEE-CCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE
T ss_pred EecCCCEEEEEEccCCceEE-EEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE
Confidence 45567888999987663 22 23447999999999999999999999999999999999876 455677899999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
+|++ ++++|++++.|++|++||++.... ......+.+ |...|.+++++|++++|++++.|+.|++||++........
T Consensus 107 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 107 RWSP-NEDKFAVGSGARVISVCYFEQEND-WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp ECCT-TSSCCEEEESSSCEEECCC------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred EECC-CCCEEEEEecCCeEEEEEECCccc-ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 9976 578999999999999999863221 113455666 9999999999999999999999999999998643211100
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-- 244 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-- 244 (303)
... .+ ... .+....+..+ +|.... ....|+|++++|++++.||.|++||+.+++.
T Consensus 185 ~~~----~~----------~~~--~~~~~~~~~~-~~~~~v------~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 185 EAS----VW----------GSR--LPFNTVCAEY-PSGGWV------HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp CSC----SS----------CSC--CCEEEEEECC-CCSSSE------EEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred ccc----cc----------ccc--cchhhhhhcc-cCCceE------EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence 000 00 000 0001111122 222111 2234788999999999999999999998876
Q ss_pred --EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 245 --VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 245 --~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+..+..|..+|++++|+|++++|++++.|+.+ +|+..
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 77788999999999999999999999876666 56544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=227.47 Aligned_cols=244 Identities=16% Similarity=0.218 Sum_probs=178.9
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+++.|..+.||++-.+.........+|..+|.+++|+|+++++++|+.|++|++||+ +++....+..|...|.+++|++
T Consensus 136 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred EEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 456778888998853222223333577799999999999999999999999999999 4666777889999999999986
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+...+|++++.|++|++||++...........+ +|...|.+++|++ ++.+|++++.|+.|++||++...........
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 292 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH- 292 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC-
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc-
Confidence 544499999999999999987433223334444 7999999999999 9999999999999999999865432211100
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
... ...+... ....+.... ... ...+++++++ +|+.|+.|++||+.+++.+..+.+
T Consensus 293 ------------~~~--~~~~~~~-~~~~~~p~~---~~~----~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 293 ------------PHR--QFQHLTP-IKATWHPMY---DLI----VAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp ------------CBC--CCTTSCC-CCCEECSSS---SEE----EEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred ------------ccc--ccccccc-eEEeccCCC---Cce----EEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 000 0000000 000111000 001 1235677877 889999999999999999988886
Q ss_pred --CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 251 --HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 251 --h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
|...+..++|+|++++|++++ |+.|++||+..
T Consensus 349 ~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 349 PNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 457788889999999999997 99999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=227.18 Aligned_cols=248 Identities=17% Similarity=0.158 Sum_probs=181.1
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
|+.|..+.+|+.-++.... ...+| ..+....|++++++|++|+.||.|++||+.++.....+.+|...|.+++|+|
T Consensus 74 ~~~d~~v~i~d~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~- 149 (420)
T 3vl1_A 74 ARLDGHDFLFNTIIRDGSK--MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP- 149 (420)
T ss_dssp EEETTEEEEEECCSEETTT--TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-
T ss_pred EEcCCcEEEEEecccceee--EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-
Confidence 4456777888875554332 22344 3344557899999999999999999999999887766678999999999975
Q ss_pred CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 93 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 93 ~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
++++|++++.|++|++||++ ..+....+.+|...|.++++++++++|++++.|++|++||++.............
T Consensus 150 ~~~~l~s~s~d~~i~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~- 224 (420)
T 3vl1_A 150 SGEALISSSQDMQLKIWSVK----DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN- 224 (420)
T ss_dssp TSSEEEEEETTSEEEEEETT----TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTB-
T ss_pred CCCEEEEEeCCCeEEEEeCC----CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCC-
Confidence 57899999999999999986 3345667889999999999999999999999999999999975432211110000
Q ss_pred eeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecC
Q 022074 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYH 251 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h 251 (303)
....+..+.+.+.... .+. ..+ ........|+|++++|++|+.||.|++||+.+++.+..+ ..|
T Consensus 225 ~~~~v~~~~~~~~~~~-------~~~--~~~------~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 289 (420)
T 3vl1_A 225 PHDGVNSIALFVGTDR-------QLH--EIS------TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF 289 (420)
T ss_dssp TTCCEEEEEEEECCCS-------SCG--GGC------CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT
T ss_pred CCCCccEEEEecCCcc-------eee--ecc------cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc
Confidence 0000000000000000 000 000 001123457889999999999999999999998876665 458
Q ss_pred CCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 252 TSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 252 ~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
..+|++++|+|+++ +|++++.||.|++||+...
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC
Confidence 89999999999999 9999999999999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=244.54 Aligned_cols=207 Identities=23% Similarity=0.342 Sum_probs=168.4
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCC-----ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
.||+..|.+|+|++++ +.|++||.|++|+|||+.++ .....+.+|...|.+++|++ ++++|+||+.|++|++|
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vw 457 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLW 457 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEE
Confidence 5999999999999864 68999999999999999764 23456789999999999975 58899999999999999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
|+. .+.....+.+|...|.+++|++++++|+|++.|++|++||++..... . ...
T Consensus 458 d~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~------------~---~~~------- 511 (694)
T 3dm0_A 458 DLA----AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY------------T---ISE------- 511 (694)
T ss_dssp ETT----TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE------------E---ECS-------
T ss_pred ECC----CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce------------e---ecc-------
Confidence 986 34456678899999999999999999999999999999997531100 0 000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCC--eEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ--KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
...+|..... +..|+|++ .++++|+.|++|++||+.+++....+.+|..+|++++|+|++++|
T Consensus 512 ---------~~~~h~~~v~------~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 512 ---------GGEGHRDWVS------CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp ---------STTSCSSCEE------EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred ---------CCCCCCCcEE------EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEE
Confidence 0011111111 12345554 589999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEeecCCC
Q 022074 268 VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~ 284 (303)
+|++.||+|++||+...
T Consensus 577 ~sg~~Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEG 593 (694)
T ss_dssp EEEETTSBCEEEETTTT
T ss_pred EEEeCCCeEEEEECCCC
Confidence 99999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=224.55 Aligned_cols=210 Identities=20% Similarity=0.291 Sum_probs=167.8
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC--CCceEEEEecccCCeEEEEEccC-CCcEEEEecCCCeEEEEcC
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~--~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~ 111 (303)
..||+.+|.+++|+|++++|++|+.||+|+|||+. ++.....+.+|...|.+++|+++ ++++|++++.||+|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 36899999999999999999999999999999998 44555667889999999999654 3789999999999999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
+... ......+.+|...|.+++++++ +.+|++++.|+.|++||++.......
T Consensus 87 ~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------------------------ 140 (379)
T 3jrp_A 87 ENGR--WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------------ 140 (379)
T ss_dssp ETTE--EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE------------------------
T ss_pred CCCc--eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee------------------------
Confidence 6321 1245567789999999999999 99999999999999999875321110
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeC-------------CCeEEEEEeCCCeEEEEECCCCe----EEEEeecCC
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYST-------------GQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHT 252 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------------~~~~latg~~dg~i~iwd~~~~~----~~~~~~~h~ 252 (303)
..+.++..... ...|+| ++.++++|+.||.|++||+.+++ .+..+.+|.
T Consensus 141 --------~~~~~~~~~v~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~ 206 (379)
T 3jrp_A 141 --------IIIDAHAIGVN------SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 206 (379)
T ss_dssp --------EEEECCTTCEE------EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred --------EEecCCCCceE------EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEeccc
Confidence 01111111111 112333 68999999999999999997653 456778899
Q ss_pred CCeEEEEECCC---CCeEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPS---QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~---~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|++++|+|+ +++|++++.||.|++||+...
T Consensus 207 ~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 207 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 99999999999 899999999999999998753
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-29 Score=220.17 Aligned_cols=243 Identities=19% Similarity=0.236 Sum_probs=173.6
Q ss_pred cCCCcccceEEEEEcCC---CCEEEEeeCCCeEEEEECCC-CceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 34 DDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEA-NKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~---g~~l~sgs~Dg~v~lwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
...+|+.+|.+++|+|+ |++|++|+.||.|+|||+.+ +... ..+.+|...|.+++|++ ++++|++++.||+|++
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKM 112 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCcEEE
Confidence 34799999999999999 69999999999999999987 4443 56778999999999975 6889999999999999
Q ss_pred EcCccccCCCccceeecccccCeEEEEe--CCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce-------------
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDS--RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY------------- 173 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~------------- 173 (303)
||++. .. ...+.+|...|.++.+ ++++.+|++++.|+.|++||++...............
T Consensus 113 wd~~~----~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 113 WDLSS----NQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp EETTT----TE-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred EEcCC----CC-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence 99862 22 2235679999999999 8999999999999999999998654332222111000
Q ss_pred ------eeecee-----eeCC-C------------CCc-----cccCCCCCcceE--------------Eecccceeee-
Q 022074 174 ------EWDYRW-----MDYP-P------------QAR-----DLKHPCDQSVAT--------------YKGHSVLRTL- 209 (303)
Q Consensus 174 ------~~~~~~-----~~~~-~------------~~~-----~~~~~~~~~~~~--------------~~~~~~~~~~- 209 (303)
.|+... .... + ... .+....+..+.. +.+|......
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 011000 0000 0 000 000000111111 1111100000
Q ss_pred -----EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 210 -----IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 210 -----~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
........|+|++++|++|+.||.|++||+.+++.+..+..|..+|++++|+|++++|++++.|+..+.|++-
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 0012234588999999999999999999999999999999999999999999999999999999877777654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=217.40 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=178.9
Q ss_pred CcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 27 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 27 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
|.........||+.+|.+++|+|+|++|++|+.||.|++||+.+++....+..|...|.+++|++ ++++|++++.||+|
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSI 98 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeE
Confidence 34443445579999999999999999999999999999999999998888999999999999975 57899999999999
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC-----CcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD-----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D-----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
++||++. .+....+. |...+.++.++++++++++++.+ +.|++||++..........
T Consensus 99 ~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------- 160 (369)
T 3zwl_B 99 KLWDVSN----GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------- 160 (369)
T ss_dssp EEEETTT----CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE-------------
T ss_pred EEEECCC----CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc-------------
Confidence 9999862 33444444 78889999999999999999999 9999999976432211100
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~~h~~~I~~v~~ 260 (303)
.....+..+.++.....+ ....+++++++|++++.||.|++||+.+ ++.+..+..|..+|.+++|
T Consensus 161 ----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 226 (369)
T 3zwl_B 161 ----------VSEEPIHKIITHEGLDAA----TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQF 226 (369)
T ss_dssp ----------ECSSCSEEEECCTTCCCE----EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEE
T ss_pred ----------cccceeeeccCCcCccce----eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEE
Confidence 000111222222211111 1234677899999999999999999998 6888889999999999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|++++|++++.|+.+++||+...
T Consensus 227 ~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 227 SPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999999998653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=242.07 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=181.3
Q ss_pred CchhhccccccccccCcCcc---cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
+|+.|..+.||+.-++.... .....||+..|.+++|+|+|++|++|+.||+|+|||+.++.....+.+|...|.+++
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~ 479 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVA 479 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEE
Confidence 67788999999886554321 123469999999999999999999999999999999999988888999999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCC--CEEEEEeCCCcEEEEEcccccCCccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG--RYLISNGKDQAIKLWDIRKMSSNASC 166 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~D~~v~lWdl~~~~~~~~~ 166 (303)
|++ +++.|+||+.|++|++||..... .........+|...|.++.+++++ .++++++.|++|++||++....
T Consensus 480 ~s~-~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~---- 553 (694)
T 3dm0_A 480 FSL-DNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL---- 553 (694)
T ss_dssp ECT-TSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----
T ss_pred EeC-CCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----
Confidence 975 57889999999999999964211 001111234788999999999986 6899999999999999864221
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA 246 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~ 246 (303)
...+.+|.... .+..|+|++++|++|+.||.|++||+.+++.+.
T Consensus 554 ------------------------------~~~~~~h~~~v------~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 554 ------------------------------RSTLAGHTGYV------STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp ------------------------------EEEECCCSSCE------EEEEECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred ------------------------------EEEEcCCCCCE------EEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 12233333211 123477899999999999999999999999888
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+.. ...|.+++|+|++.+|++++ |+.|++||+...
T Consensus 598 ~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~ 633 (694)
T 3dm0_A 598 SLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK 633 (694)
T ss_dssp CCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred EecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence 7764 56899999999999888776 566999998754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=222.69 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=165.4
Q ss_pred CCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEe--cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.+|..+|.+++|+|++ ++|++|+.||+|+|||+.++.....+. +|...|.+++|++.++++|++++.|++|++||++
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 6999999999999999 899999999999999999887665554 6999999999987567899999999999999986
Q ss_pred cccCCCccceeec---ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 113 CLNVKGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 113 ~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
. .....+. +|...|.++++++++++|++++.|+.|++||++..
T Consensus 150 ~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------------------------- 195 (383)
T 3ei3_B 150 G-----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH----------------------------- 195 (383)
T ss_dssp S-----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC-----------------------------
T ss_pred C-----CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC-----------------------------
Confidence 2 2233333 34578999999999999999999999999998421
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCC----CeEEEEeecCCCCeEEEEECC-C
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVS----GEQVAALKYHTSPVRDCSWHP-S 263 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~----~~~~~~~~~h~~~I~~v~~sp-~ 263 (303)
.+..+.+|.... ....|+|+++ +|++|+.|+.|++||+.+ ++.+..+ .|..+|++++|+| +
T Consensus 196 ------~~~~~~~h~~~v------~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 196 ------EIFKEKLHKAKV------THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTD 262 (383)
T ss_dssp ------EEEEEECSSSCE------EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTT
T ss_pred ------EEEEeccCCCcE------EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCC
Confidence 111222222111 1234677888 999999999999999987 5666666 6999999999999 9
Q ss_pred CCeEEEEeCCCCEEEeecCCC
Q 022074 264 QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|++++.|+.|++||+...
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBT
T ss_pred CCEEEEEcCCCcEEEEECCCC
Confidence 999999999999999998643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=232.13 Aligned_cols=208 Identities=16% Similarity=0.123 Sum_probs=161.4
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.|..+|.+++|+|+|++|++|+.|++|+|||+.++ +....+.+|...|.+++|++ ++++|++++.|++|++||++..
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC-----
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 35567999999999999999999999999999988 55566778999999999975 4789999999999999998632
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
. ...+...+.+|...|.++.+++++++|++++.|+.|++||++......
T Consensus 88 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------------------------ 136 (377)
T 3dwl_C 88 G-TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW------------------------------ 136 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC------------------------------
T ss_pred C-ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce------------------------------
Confidence 2 122455677899999999999999999999999999999987532100
Q ss_pred CcceEEec-ccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC------------------CCeEEEEeecCCCCe
Q 022074 195 QSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV------------------SGEQVAALKYHTSPV 255 (303)
Q Consensus 195 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~------------------~~~~~~~~~~h~~~I 255 (303)
....+.+ |.... ....|+|++++|++|+.|+.|++||+. .++.+..+ .|..+|
T Consensus 137 -~~~~~~~~h~~~v------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 208 (377)
T 3dwl_C 137 -VSKHLKRPLRSTI------LSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV 208 (377)
T ss_dssp -CCEEECSSCCSCE------EEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred -eeeEeecccCCCe------EEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence 0111111 21111 123477899999999999999999985 34566666 899999
Q ss_pred EEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 256 RDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++++|+|++++|++++.|+.|++||+...
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999999999999999999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=229.74 Aligned_cols=267 Identities=17% Similarity=0.183 Sum_probs=184.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecc--cCCeEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNT 86 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h--~~~v~~ 86 (303)
+-+|+.|..|.||+.-++.........||..+|.+|+|+| ++++|++|+.||+|+|||++++........| ...+.+
T Consensus 135 lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 214 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCS 214 (435)
T ss_dssp EEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCC
T ss_pred EEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEE
Confidence 3456788999999987766554445579999999999998 7899999999999999999877544333333 335788
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
++|++ ++++|++|+.||+|++||++ .+....+.+|...|.+++|+|++. +|++++.|++|++||++.......
T Consensus 215 ~~~~~-~~~~l~~g~~dg~i~~wd~~-----~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 215 LDVSA-SSRMVVTGDNVGNVILLNMD-----GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp EEEET-TTTEEEEECSSSBEEEEESS-----SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred EEECC-CCCEEEEEeCCCcEeeeccC-----cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 99975 57899999999999999975 234556778999999999999875 788999999999999987543322
Q ss_pred cccCccceeeeceeeeCCCCCccccCCC-CCcceEEecccc--eeeeE---------EEeeeeeeeCCCeEEEEEe----
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSV--LRTLI---------RCHFSPVYSTGQKYIYTGS---- 229 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~---------~~~~~~~~s~~~~~latg~---- 229 (303)
... .......+..+.+.++...+.... +..+..++-... ..... .......+++++.++++++
T Consensus 289 ~~~-~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 289 FLY-SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CSB-CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred EEE-eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 211 011112223344555544443322 233333322110 00000 0001122445555555553
Q ss_pred --------CCCeEEEEECCCCeEEEEe-ecCCCCeEEE-EECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 230 --------HDSCVYVYDLVSGEQVAAL-KYHTSPVRDC-SWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 230 --------~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v-~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.++.|++||..+++.+..+ .+|...|.++ +|||++++||+|+ |++|++|++...
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 3468999999999988776 4788889987 6999999999986 789999998754
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=221.62 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=179.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
..|+.+|.+++|+|+++++++|+.|+.|++||+.+++ ....+.+|...|.+++|++ ++++|++++.|+.|++||++.
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEET
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCC
Confidence 4588899999999999999999999999999999987 6677889999999999976 578999999999999999752
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC-
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP- 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (303)
.. ......+.+|...|.++.+++++++|++++.|+.|++||++..................+..+.+.+....+...
T Consensus 84 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RT--WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TE--EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred Ce--eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 21 112223467889999999999999999999999999999986432111100000111112223333433333222
Q ss_pred CCCcceEEecc-------------------cceeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 193 CDQSVATYKGH-------------------SVLRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 193 ~~~~~~~~~~~-------------------~~~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.+..+..++-. ........ ......|+|++++|++++.|+.|++||+.+++.+..+.
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 12233333310 00000000 11234578899999999999999999999999999999
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|..+|.+++|+|++++|+++ .|+.+++|++..
T Consensus 242 ~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 242 SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 999999999999999998888 899999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=221.93 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=178.7
Q ss_pred CchhhccccccccccCcCc--ccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCC-------ceEEEEeccc
Q 022074 12 SGTMESLANVTEIHDGLDF--SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEAN-------KLSLRILAHT 81 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~-------~~~~~~~~h~ 81 (303)
+|+.+..+.||+.-..... ......||+.+|.+++|+| +++.|++|+.||+|+|||+.++ .....+.+|.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 4556778888887443322 1223479999999999999 9999999999999999999987 4456788999
Q ss_pred CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 82 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
..|.+++|+++..++|++++.|++|++||++ .......+ .+|...|.++++++++++|++++.|+.|++||++.
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 207 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVG----TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK 207 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETT----TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECC----CCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence 9999999987644799999999999999986 33445566 68999999999999999999999999999999875
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE-ecccceeeeEEEeeeeeeeCCCeEEEEE---eCCCeEE
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-KGHSVLRTLIRCHFSPVYSTGQKYIYTG---SHDSCVY 235 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~latg---~~dg~i~ 235 (303)
.... ..+ .+|... .. ....|++++++|++| +.|+.|+
T Consensus 208 ~~~~----------------------------------~~~~~~~~~~-~~----~~~~~~~~~~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 208 GTVV----------------------------------AEKDRPHEGT-RP----VHAVFVSEGKILTTGFSRMSERQVA 248 (402)
T ss_dssp TEEE----------------------------------EEEECSSCSS-SC----CEEEECSTTEEEEEEECTTCCEEEE
T ss_pred Ccee----------------------------------eeeccCCCCC-cc----eEEEEcCCCcEEEEeccCCCCceEE
Confidence 3211 011 111100 00 112367889999999 7999999
Q ss_pred EEECCCCeE-EEEee-cCCCCeEEEEECCCCCeEE-EEeCCCCEEEeecCCC
Q 022074 236 VYDLVSGEQ-VAALK-YHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 236 iwd~~~~~~-~~~~~-~h~~~I~~v~~sp~~~~la-s~s~Dg~i~~Wd~~~~ 284 (303)
+||+.+++. +.... .|...+.+++|+|++++|+ +++.|+.|++||+...
T Consensus 249 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 249 LWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred EEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 999988654 33333 5778899999999999886 5557999999998754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=220.11 Aligned_cols=259 Identities=17% Similarity=0.198 Sum_probs=184.3
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCC---CCEEEEeeCCCeEEEEECCCCc-eEEEEecccCCeEEEEEcc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~sgs~Dg~v~lwd~~~~~-~~~~~~~h~~~v~~l~~~~ 91 (303)
|..+.||+.-+|... .....+|..+|.+++|+|+ |+++++|+.||.|++||+.+++ ....+.+|...|.++.|.+
T Consensus 43 d~~v~iw~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp CEEEEEEEECSSSEE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred CcEEEEEeCCCCccc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 788899988655432 2333589999999999998 6999999999999999999887 6777889999999997642
Q ss_pred -----CCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc----CeEEEE----eCCCCCEEEEEeCCCcEEEEEcc
Q 022074 92 -----ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE----GITFID----SRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 92 -----~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~----~v~~~~----~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
++++.|++++.|++|++||++... .+...+..|.. .+.++. ++++++++++++.|+.|++||++
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 198 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKD---DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR 198 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCS---SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCC---CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc
Confidence 457899999999999999986322 23444444433 688887 78899999999999999999998
Q ss_pred cccCCcccccCccceeeeceeeeCCC---CCccccCCC-CCcceEEeccc--ceeee--------EEEeeeeeeeCCCe-
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPP---QARDLKHPC-DQSVATYKGHS--VLRTL--------IRCHFSPVYSTGQK- 223 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~--~~~~~--------~~~~~~~~~s~~~~- 223 (303)
.......... ...+..+.+.+ ....+.... +..+..++-.. ..... ........|+|+++
T Consensus 199 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 273 (357)
T 3i2n_A 199 NMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRE 273 (357)
T ss_dssp TTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEE
T ss_pred cCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCc
Confidence 6443211111 11122233433 333332221 22232222111 00000 00112345788888
Q ss_pred EEEEEeCCCeEEEEECCCC-------------------eEEEEeecCCCCeEEEEECCCCCeEE-EEeCCCCEEEeecCC
Q 022074 224 YIYTGSHDSCVYVYDLVSG-------------------EQVAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPG 283 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~I~~v~~sp~~~~la-s~s~Dg~i~~Wd~~~ 283 (303)
+|++|+.||.|++||+.++ +.+..+..|..+|++++|+|++++|+ |++.|+.+++||+..
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 8999999999999998753 45777889999999999999999998 899999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=250.64 Aligned_cols=265 Identities=20% Similarity=0.269 Sum_probs=201.1
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|.... ...+|..+|.+++|+|+|+++++|+.||+|++||+.+++....+.+|...|.+++|++
T Consensus 632 s~~~d~~i~vw~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 709 (1249)
T 3sfz_A 632 SCGADKTLQVFKAETGEKLL--DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709 (1249)
T ss_dssp EEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EEeCCCeEEEEECCCCCEEE--EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEec
Confidence 45677889999987776442 3369999999999999999999999999999999999998888999999999999976
Q ss_pred C-CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 92 E-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+ +..++++|+.|++|++||++ .+.....+.+|...|.++.++|+++++++++.|+.|++||++............
T Consensus 710 ~~~~~~l~sg~~d~~v~vwd~~----~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 785 (1249)
T 3sfz_A 710 KSNHLLLATGSNDFFLKLWDLN----QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785 (1249)
T ss_dssp SSSCCEEEEEETTSCEEEEETT----SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred CCCceEEEEEeCCCeEEEEECC----CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence 4 45689999999999999986 344566778999999999999999999999999999999997643221111000
Q ss_pred ---------cceeeeceeeeCCCCCccccCCCCCcceEEecccce--eeeE----EEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 171 ---------RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL--RTLI----RCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 171 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
......+..+.+.++...+.......+..++..... .... .......|+|+++++++++.||.|+
T Consensus 786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence 000011122333344333332222223222211110 0000 0112345788999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+||..+++.+..+.+|..+|++++|+|++++|++++.|+++++|++.
T Consensus 866 vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 866 LWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999975
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=216.48 Aligned_cols=237 Identities=18% Similarity=0.097 Sum_probs=176.0
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---eEEEEecccCCeEEEEEccCCCc-EEEEecCCCeEEEEc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVWD 110 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~-~l~s~s~dg~v~lWd 110 (303)
..+|+.+|.+++|+|++++|++++.||+|+|||+.++. ....+..|...|.+++|+++ ++ +|++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEEE
Confidence 46899999999999999999999999999999998876 23456689999999999764 78 899999999999999
Q ss_pred C-ccccCCCccceeecc--cccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc---------ccCCcccccCccceeeece
Q 022074 111 R-RCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK---------MSSNASCNLGFRSYEWDYR 178 (303)
Q Consensus 111 ~-~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~---------~~~~~~~~~~~~~~~~~~~ 178 (303)
+ ... ....+.+ |...|.++.+++ +++|++++.|+.|++||++. .......... ..+.
T Consensus 86 ~~~~~-----~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~v~ 154 (342)
T 1yfq_A 86 LIGSP-----SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK-----NKIF 154 (342)
T ss_dssp SSSSS-----SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC-----CCEE
T ss_pred eccCC-----ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC-----CceE
Confidence 7 522 2356677 999999999999 99999999999999999986 3322222111 1111
Q ss_pred eeeCCCCCccccCCCCCcceEEeccc-ce---eeeE----EEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCC------e
Q 022074 179 WMDYPPQARDLKHPCDQSVATYKGHS-VL---RTLI----RCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSG------E 243 (303)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~----~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~------~ 243 (303)
.+.+.+.. .+....+..+..++-.. .. .... .......++| +++++++++.||.|++||+..+ +
T Consensus 155 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~ 233 (342)
T 1yfq_A 155 TMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred EEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence 22222222 11111222233332221 00 0000 0112345788 8999999999999999999876 6
Q ss_pred EEEEeecCCC---------CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTS---------PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~---------~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+..+..|.. +|++++|+|++++|++++.||.|++||+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 6778888865 9999999999999999999999999998643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=227.11 Aligned_cols=226 Identities=19% Similarity=0.247 Sum_probs=173.0
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-++... ....+|..+|.+++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|++
T Consensus 114 ~~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 114 LGTTEGDIKVLDSNFNLQR--EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp EEETTSCEEEECTTSCEEE--EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred EEECCCCEEEEeCCCccee--eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 3456778888887544322 23369999999999999999999999999999999999988888889999999999976
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecc---cc---------------------cCeEEEEeCCCCCEEEEEe
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---HL---------------------EGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~---h~---------------------~~v~~~~~~~~~~~l~s~~ 147 (303)
+++.|++++.|++|++||++. .+....+.. |. ..+.++.+++++++|++++
T Consensus 192 -~~~~l~s~~~d~~v~iwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 266 (420)
T 3vl1_A 192 -RGRNVLSASLDGTIRLWECGT----GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH 266 (420)
T ss_dssp -TTTEEEEEETTSCEEEEETTT----TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred -CCCEEEEEcCCCcEEEeECCC----CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence 578999999999999999863 223333332 22 3444555688999999999
Q ss_pred CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEE
Q 022074 148 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIY 226 (303)
Q Consensus 148 ~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~la 226 (303)
.|+.|++||++........ ..++.... ....|+|+++ +|+
T Consensus 267 ~dg~i~i~d~~~~~~~~~~---------------------------------~~~~~~~v------~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 267 VSGVITVHNVFSKEQTIQL---------------------------------PSKFTCSC------NSLTVDGNNANYIY 307 (420)
T ss_dssp TTSCEEEEETTTCCEEEEE---------------------------------CCTTSSCE------EEEEECSSCTTEEE
T ss_pred CCCeEEEEECCCCceeEEc---------------------------------ccccCCCc------eeEEEeCCCCCEEE
Confidence 9999999998753211000 00111101 1234677887 999
Q ss_pred EEeCCCeEEEEECCCCeE-EEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 227 TGSHDSCVYVYDLVSGEQ-VAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~-~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|+.||.|++||+.+++. +..+.. |..+|+++.| +++++|++++.|+.+++|++...
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 999999999999998754 666766 6778888855 57889999999999999998753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=225.42 Aligned_cols=261 Identities=13% Similarity=0.096 Sum_probs=177.6
Q ss_pred Cchhhcccccccccc---CcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC---CCceEEEEec------
Q 022074 12 SGTMESLANVTEIHD---GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---ANKLSLRILA------ 79 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~---~~~~~~~~~~------ 79 (303)
+|+.|..+.||+.-+ |......-..+|..+|.+++|+|+++.|++|+.||+|++||+. +++.......
T Consensus 81 s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~ 160 (437)
T 3gre_A 81 TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKI 160 (437)
T ss_dssp EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEE
Confidence 566888899999866 4322222223799999999999999999999999999999994 4543332221
Q ss_pred ------ccCCeEEEEEc-cCCCcEEEEecCCCeEEEEcCccccCCCccceeecc--cccCeEEEEeCCCCCEEEEEeCCC
Q 022074 80 ------HTSDVNTVCFG-DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQ 150 (303)
Q Consensus 80 ------h~~~v~~l~~~-~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~D~ 150 (303)
+...+.++.+. .+++++|++++.|++|++||++ ..+....+.+ |...|.++++++++++|++++.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 161 NLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR----TLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT----TCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred EccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 44556666532 2457899999999999999986 3345566766 889999999999999999999999
Q ss_pred cEEEEEcccccCCcccccCccceeeeceee----eCCCCCccccCCC-CCcceEEecccce-eeeEE-------------
Q 022074 151 AIKLWDIRKMSSNASCNLGFRSYEWDYRWM----DYPPQARDLKHPC-DQSVATYKGHSVL-RTLIR------------- 211 (303)
Q Consensus 151 ~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~------------- 211 (303)
.|++||++............. ..+..+ .+.++...+.... +..+..++-.... .....
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred eEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 999999986443222211111 111122 1222222222221 2222222211100 00000
Q ss_pred -----------------EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec------------------------
Q 022074 212 -----------------CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------------------------ 250 (303)
Q Consensus 212 -----------------~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~------------------------ 250 (303)
......|+ ++++|++|+.|+.|++||+.+++.+..+.+
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKM 392 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEEC
T ss_pred cccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEec
Confidence 01122456 568999999999999999998876665554
Q ss_pred -------------CCCCeEEEEECCC--CCeEEEEeCCCCEEEee
Q 022074 251 -------------HTSPVRDCSWHPS--QPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 251 -------------h~~~I~~v~~sp~--~~~las~s~Dg~i~~Wd 280 (303)
|...|++++|+++ +.+|+||+.||.|++|+
T Consensus 393 ~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 393 KRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 77999999999999995
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-28 Score=224.35 Aligned_cols=226 Identities=25% Similarity=0.415 Sum_probs=181.8
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|.... ...||+.+|.+++|++++ .+++|+.||+|++||+.+++....+.+|...|.+++|.+
T Consensus 137 sgs~dg~i~vwd~~~~~~~~--~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~ 213 (464)
T 3v7d_B 137 TGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 213 (464)
T ss_dssp EEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEE--EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEec
Confidence 46778888999986665332 336999999999999988 999999999999999999998888889999999999975
Q ss_pred -CCCcEEEEecCCCeEEEEcCccccCCCc-------------------cceeecccccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 92 -ESGHLIYSGSDDNLCKVWDRRCLNVKGK-------------------PAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 92 -~~~~~l~s~s~dg~v~lWd~~~~~~~~~-------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
++++++++++.|++|++||++....... ....+.+|...+.++ +++++++++++.|+.
T Consensus 214 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT 291 (464)
T ss_dssp SSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred CCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence 4568999999999999999864321100 134567788888887 457889999999999
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d 231 (303)
|++||++.... +..+.+|.... ....++++++++++|+.|
T Consensus 292 i~vwd~~~~~~----------------------------------~~~~~~~~~~v------~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 292 LIVWDVAQMKC----------------------------------LYILSGHTDRI------YSTIYDHERKRCISASMD 331 (464)
T ss_dssp EEEEETTTTEE----------------------------------EEEECCCSSCE------EEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCcE----------------------------------EEEecCCCCCE------EEEEEcCCCCEEEEEeCC
Confidence 99999874321 11222222111 123467889999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|.|++||+.+++.+..+.+|..+|.+++|+ +++|++++.||++++||+...
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred CcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 999999999999999999999999999998 589999999999999998753
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-28 Score=223.44 Aligned_cols=231 Identities=22% Similarity=0.319 Sum_probs=180.7
Q ss_pred CchhhccccccccccCc---------CcccccCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCce-------E
Q 022074 12 SGTMESLANVTEIHDGL---------DFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKL-------S 74 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~-------~ 74 (303)
+++.+..+.||++-+.. .. .....+|..+|.+++|+|+++ .|++|+.||+|++||+.++.. .
T Consensus 146 t~~~dg~V~vwd~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 224 (430)
T 2xyi_A 146 TKTPSSDVLVFDYTKHPSKPEPSGECQP-DLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK 224 (430)
T ss_dssp EECSSSCEEEEEGGGSCSSCCTTCCCCC-SEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECS
T ss_pred EECCCCcEEEEECCCcccccCccccCCC-cEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccc
Confidence 44556778888886521 11 122358999999999999998 999999999999999987421 2
Q ss_pred EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEE
Q 022074 75 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIK 153 (303)
Q Consensus 75 ~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~ 153 (303)
..+..|...|.+++|++.++.+|++++.|+.|++||++... ...+...+..|...|.+++|++++. ++++++.|+.|+
T Consensus 225 ~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~ 303 (430)
T 2xyi_A 225 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303 (430)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence 45668999999999987678899999999999999987432 1244556678999999999999887 689999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCC
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDS 232 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg 232 (303)
+||++.... .+..+.+|.... ....|+|++ .+|++++.|+
T Consensus 304 vwd~~~~~~---------------------------------~~~~~~~h~~~v------~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 304 LWDLRNLKL---------------------------------KLHSFESHKDEI------FQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp EEETTCTTS---------------------------------CSEEEECCSSCE------EEEEECSSCTTEEEEEETTS
T ss_pred EEeCCCCCC---------------------------------CeEEeecCCCCE------EEEEECCCCCCEEEEEeCCC
Confidence 999975321 122233332111 122356666 5799999999
Q ss_pred eEEEEECCC--------------CeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 233 CVYVYDLVS--------------GEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 233 ~i~iwd~~~--------------~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
.|++||+.. .+.+..+.+|..+|++++|+|+++ +|++++.||.|++|++..
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 999999976 356778889999999999999999 899999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=218.26 Aligned_cols=247 Identities=16% Similarity=0.280 Sum_probs=172.2
Q ss_pred CCCcccceEEEEEcCCCCEE-EEeeC---CCeEEEEECCCCceEEE-EecccCCeEEEEEccCC--CcEEEEecCCCeEE
Q 022074 35 DGGYSFGIFSLKFSTDGREL-VAGSS---DDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDES--GHLIYSGSDDNLCK 107 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l-~sgs~---Dg~v~lwd~~~~~~~~~-~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~ 107 (303)
..||..+|.+++|+|+++.+ ++|+. ||+|+|||+.+++.... ..+|...|.+++|+++. +++|++++.||.|+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 36799999999999999755 45665 99999999999876543 34788999999998753 68999999999999
Q ss_pred EEcCccccCCCccceeecccccCeEEEE------eCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCccceeeeceee
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFID------SRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~~~~~~~~~~ 180 (303)
+||+.... .+...+.+|...|.++. +++++++|++++.|+.|++||++... ...............+..+
T Consensus 94 iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 94 IWNLEAPE---MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EECTTSCS---SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEeCCCCC---ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 99986321 25667889999999984 57899999999999999999998654 2211111000000011111
Q ss_pred e----CCCCCccccCCC-CCcceEEecccceeeeEE----EeeeeeeeC---CCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 181 D----YPPQARDLKHPC-DQSVATYKGHSVLRTLIR----CHFSPVYST---GQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 181 ~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~s~---~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
. +.+....+.... +..+..++-......... ......|+| ++.++++|+.||.|++||+.+++.+..+
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 250 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGF 250 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccce
Confidence 1 333333332222 223333332211110001 112345777 8899999999999999999877644333
Q ss_pred -----ecCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCCC
Q 022074 249 -----KYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 -----~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~~ 284 (303)
..|..+|++++|+|+++ +|++++.||.+++||+...
T Consensus 251 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 251 ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 48999999999999998 8999999999999998643
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=220.83 Aligned_cols=258 Identities=15% Similarity=0.142 Sum_probs=189.0
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCC---------
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD--------- 83 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~--------- 83 (303)
|+.+..+.||+ .+|... ....+|..+|.+++|+|++++|++++.|+.|++||+.+++....+..+...
T Consensus 126 ~~~dg~i~i~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 126 GVENGELRLWN-KTGALL--NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EETTSCEEEEE-TTSCEE--EEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EeCCCeEEEEe-CCCCee--eeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 45567788887 444332 233689999999999999999999999999999999999887777777666
Q ss_pred ------eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 84 ------VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 84 ------v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
+.+++|+++ ..+++++.|+.|++||++. ..+...+.+|...|.++++++++++|++++.|+.|++||+
T Consensus 203 ~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITE----KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHG 276 (425)
T ss_dssp ---CCCBSCCEEEET--TEEEEECGGGCEEEEETTC----SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECS
T ss_pred cCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCC----CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 889999763 5688999999999999863 3456667789999999999999999999999999999998
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccce-eeeEE----EeeeeeeeCCCeEEEEEeCCC
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVL-RTLIR----CHFSPVYSTGQKYIYTGSHDS 232 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~s~~~~~latg~~dg 232 (303)
+.......... ....+..+.+.+....+....+..+..++-.... ..... ......|+|++++|++++.||
T Consensus 277 ~~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 277 GNGNSQNCFYG----HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp SSBSCSEEECC----CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTS
T ss_pred CCCccceEecC----CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCC
Confidence 86543322211 1111122233333311112222333333321110 00111 112345788999999999999
Q ss_pred eEEEEECCCCe--------------------EEEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 233 CVYVYDLVSGE--------------------QVAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 233 ~i~iwd~~~~~--------------------~~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.|++||+.+++ .+..+..|.. +|++++|+|++++|++++.||.|++|++++
T Consensus 353 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 353 QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 99999999888 8888999976 999999999999999999999999999863
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=234.61 Aligned_cols=261 Identities=13% Similarity=0.053 Sum_probs=161.3
Q ss_pred ccCchhhccccccccccCcCcc---------cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEEec
Q 022074 10 VGSGTMESLANVTEIHDGLDFS---------AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILA 79 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-~~~~~~~ 79 (303)
+-+|+.|..+.||++-++.... .....||+.+|.+++|+++ ..|++|+.||+|++||+.++. ....+.+
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~ 306 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV 306 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec
Confidence 3456778889999986664220 0134689999999999986 489999999999999998764 3345778
Q ss_pred ccCCeEEEE--EccCCC-cEEEEecCCCeEEEEcCccccCCCccceeeccccc--CeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 80 HTSDVNTVC--FGDESG-HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 80 h~~~v~~l~--~~~~~~-~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
|...|.+++ | ++++ ++|+||+.|++|+|||++.. +....+.+|.. .|.+++|+|++..+++++.|++|++
T Consensus 307 H~~~V~sv~~~~-s~~g~~~laS~S~D~tvklWD~~~~----~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~l 381 (524)
T 2j04_B 307 HDSYILSVSTAY-SDFEDTVVSTVAVDGYFYIFNPKDI----ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRA 381 (524)
T ss_dssp SSSCEEEEEEEC-CTTSCCEEEEEETTSEEEEECGGGH----HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEE
T ss_pred ccccEEEEEEEc-CCCCCeEEEEeccCCeEEEEECCCC----CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEE
Confidence 999999994 5 4555 89999999999999998632 23345556654 4788999999999999999999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEecccc-eeeeE---E-----EeeeeeeeCCCeE
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSV-LRTLI---R-----CHFSPVYSTGQKY 224 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~---~-----~~~~~~~s~~~~~ 224 (303)
||++........ ......+..+.+.|..+.+.... +..+..++-... ..... . ..+...|+|+++.
T Consensus 382 wd~~~~~~~~~l----~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~ 457 (524)
T 2j04_B 382 VPSRAAFAVHPL----VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDK 457 (524)
T ss_dssp EETTCTTCCEEE----EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCE
T ss_pred EECcccccceee----ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCe
Confidence 999864321111 11111122233344333332211 112221111000 00000 0 1122334454442
Q ss_pred EEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEECCCCC---eEEEEeCCCCEEEeecCC
Q 022074 225 IYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 225 latg~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v~~sp~~~---~las~s~Dg~i~~Wd~~~ 283 (303)
+ ....+ .++|+.. ++..+..+.+|..+|++|+|||+++ +||+|+.||.|++|++..
T Consensus 458 ~-~~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 458 Y-RIDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp E-EECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred E-EccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2 11111 2222221 3445566778999999999999965 999999999999999875
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-28 Score=217.09 Aligned_cols=257 Identities=20% Similarity=0.219 Sum_probs=176.6
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEe-------------cccC
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL-------------AHTS 82 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-------------~h~~ 82 (303)
..+.||+.-.+... ....+|+.+|.+++|+| ++++|++|+.||+|++||+.++.....+. +|..
T Consensus 23 ~~~~v~~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 23 STRRVLGLELNKDR--DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHTEEECTTE--EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred CcceeeccccCcce--eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44456665333322 24478999999999999 99999999999999999999876433222 4889
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC---CCCEEEEEeCCCcEEEEEccc
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG---DGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.|.+++|++.++++|++++.|+.|++||++. ......+ .+...+..+.+.+ ++.++++++.|+.|++||++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----LQTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTT----TEEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----Cccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 9999999876788999999999999999862 2333333 3667788888877 445999999999999999986
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCcc-ccC-CCCCcceEEecccce---------------------eeeEEEeeee
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARD-LKH-PCDQSVATYKGHSVL---------------------RTLIRCHFSP 216 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~---------------------~~~~~~~~~~ 216 (303)
........ .....+..+.+.+.... +.. ..+..+..++-.... ..........
T Consensus 176 ~~~~~~~~----~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 251 (408)
T 4a11_B 176 GSCSHILQ----GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL 251 (408)
T ss_dssp SCCCEEEC----CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE
T ss_pred cceeeeec----CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE
Confidence 54332221 11112223334444332 211 112222222211000 0000011233
Q ss_pred eeeCCCeEEEEEeCCCeEEEEECCCC-----------------------------------------------eEEEEee
Q 022074 217 VYSTGQKYIYTGSHDSCVYVYDLVSG-----------------------------------------------EQVAALK 249 (303)
Q Consensus 217 ~~s~~~~~latg~~dg~i~iwd~~~~-----------------------------------------------~~~~~~~ 249 (303)
.|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus 252 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 252 CFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 46778888888888888888887643 4566777
Q ss_pred cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|..+|++++|+|++++|++++.||.|++||+...
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 89999999999999999999999999999998754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=220.26 Aligned_cols=239 Identities=14% Similarity=0.168 Sum_probs=178.4
Q ss_pred CchhhccccccccccCcCcc---cccCCCc-----ccceEEEEEc----CCCCE-EEEeeCCCeEEEEECCC------Cc
Q 022074 12 SGTMESLANVTEIHDGLDFS---AADDGGY-----SFGIFSLKFS----TDGRE-LVAGSSDDCIYVYDLEA------NK 72 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~v~~l~~s----~~g~~-l~sgs~Dg~v~lwd~~~------~~ 72 (303)
+++.|..+.||+.-++.... .....+| ..+|.+++|+ |+++. +++++.||.|++||+.+ +.
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 45667888999987766410 1233567 6999999999 99999 99999999999999988 54
Q ss_pred eEE-----EE-------ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecc---c---ccCeEEE
Q 022074 73 LSL-----RI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG---H---LEGITFI 134 (303)
Q Consensus 73 ~~~-----~~-------~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~---h---~~~v~~~ 134 (303)
... .+ ..|...|.+++|+++ + .+++++.|+.|++||++ ...+...+.. | ...+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELS----TLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETT----TTEEEEEEECCC---CCCCCEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECC----CCceeEEEeccccccccCCccceE
Confidence 443 45 348889999999764 6 99999999999999986 2345566777 8 8899999
Q ss_pred EeCCCCCEEEEEeCC---CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 135 DSRGDGRYLISNGKD---QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 135 ~~~~~~~~l~s~~~D---~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
++++++.+|++++.| +.|++||++......... .+.... ...+.. ..|... +
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~--------------~~~~~~------~~~~~~-~~~~~~--v-- 294 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS--------------VPTHSS------QASLGE-FAHSSW--V-- 294 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--------------BC--------------CC-BSBSSC--E--
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceec--------------cCcccc------cccccc-cccCCc--E--
Confidence 999999999999999 999999987532211100 000000 000000 001111 1
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee------cC---------------CCCeEEEEECCCC------
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK------YH---------------TSPVRDCSWHPSQ------ 264 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~------~h---------------~~~I~~v~~sp~~------ 264 (303)
....|+|++++|++++.||.|++||+.+++.+..+. .| ..+|++++|+|++
T Consensus 295 --~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 295 --MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp --EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred --EEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 123467889999999999999999999999999998 88 9999999999998
Q ss_pred ----CeEEEEeCCCCEEEeecCC
Q 022074 265 ----PMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 265 ----~~las~s~Dg~i~~Wd~~~ 283 (303)
++|++++.||.|++|+++.
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccceEEEecCCCcEEEEEcCC
Confidence 7999999999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=210.95 Aligned_cols=263 Identities=17% Similarity=0.190 Sum_probs=193.9
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
|+.|..+.||+.-+|... ....+|..+|.+++|+|++++|++++.||+|++||+.+++....+. |...+.+++|++
T Consensus 50 ~~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~- 125 (369)
T 3zwl_B 50 CSKDSSASVWYSLNGERL--GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSP- 125 (369)
T ss_dssp EESSSCEEEEETTTCCEE--EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECT-
T ss_pred EeCCCEEEEEeCCCchhh--hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEcc-
Confidence 456778888887665533 2347899999999999999999999999999999999998776655 888999999975
Q ss_pred CCcEEEEecCC-----CeEEEEcCccccCC-------Cccceeeccccc--CeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 93 SGHLIYSGSDD-----NLCKVWDRRCLNVK-------GKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 93 ~~~~l~s~s~d-----g~v~lWd~~~~~~~-------~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
+++.+++++.+ +.|++||++..... ..+...+..|.. .+.++++++++++|++++.|+.|++||++
T Consensus 126 ~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 126 CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 57899999988 99999997633211 123344556666 89999999999999999999999999997
Q ss_pred cc-cCCcccccCccceeeeceeeeCCCCCccccCCC-CCcceEEeccccee-eeEE---EeeeeeeeCCCeEEEEEeCCC
Q 022074 159 KM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLR-TLIR---CHFSPVYSTGQKYIYTGSHDS 232 (303)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~---~~~~~~~s~~~~~latg~~dg 232 (303)
.. ....... .....+..+.+.++...+.... +..+..++-..... .... ......++|+++++++++.++
T Consensus 206 ~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 206 NNYEYVDSID----LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTTEEEEEEE----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred CCcEeEEEEe----cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 52 2111111 1111222334444444333222 23333333221100 0000 112345788999999999988
Q ss_pred --------------eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 233 --------------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 233 --------------~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+++||..+++.+..+.+|..+|++++|+|++++|++++.||.|++|++..
T Consensus 282 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 282 AKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp -------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred CceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 899999999999999999999999999999999999999999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=220.58 Aligned_cols=231 Identities=14% Similarity=0.156 Sum_probs=181.1
Q ss_pred CchhhccccccccccCcCc----ccccCCCcccceEEEEEcCC----C---CEEEEeeCCCeEEEEECCCCce-----EE
Q 022074 12 SGTMESLANVTEIHDGLDF----SAADDGGYSFGIFSLKFSTD----G---RELVAGSSDDCIYVYDLEANKL-----SL 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~l~~s~~----g---~~l~sgs~Dg~v~lwd~~~~~~-----~~ 75 (303)
+|+.|..+.||+.-++... ......+|..+|.+++|+|+ | ++|++++.||+|++||+.++.. ..
T Consensus 31 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 110 (397)
T 1sq9_A 31 SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE 110 (397)
T ss_dssp EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE
T ss_pred EEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccce
Confidence 4566788899998766511 12233599999999999999 9 9999999999999999998875 66
Q ss_pred EEecc-----cCCeEEEEEc----cCCCcE-EEEecCCCeEEEEcCcc------ccCCC-ccceee-------cccccCe
Q 022074 76 RILAH-----TSDVNTVCFG----DESGHL-IYSGSDDNLCKVWDRRC------LNVKG-KPAGVL-------MGHLEGI 131 (303)
Q Consensus 76 ~~~~h-----~~~v~~l~~~----~~~~~~-l~s~s~dg~v~lWd~~~------~~~~~-~~~~~~-------~~h~~~v 131 (303)
.+..| ...|.+++|+ + +++. |++++.||.|++||++. ..... .+...+ ..|...+
T Consensus 111 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 111 KLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp EECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred eecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 77788 5899999997 5 4677 99999999999999864 21111 111144 3478889
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEec---c---cc
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---H---SV 205 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~ 205 (303)
.++++++++ ++++++.|+.|++||++.... +..+.+ | ..
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~----------------------------------~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELSTLRP----------------------------------LYNFESQHSMINNSN 234 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTTTEE----------------------------------EEEEECCC---CCCC
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCCCce----------------------------------eEEEeccccccccCC
Confidence 999999999 999999999999999874221 111111 1 11
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeEEEEeec-------------CCCCeEEEEECCCCCeEEE
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQVAALKY-------------HTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~-------------h~~~I~~v~~sp~~~~las 269 (303)
.. ....|+|++++|++++.| |.|++||+.+++.+..+.. |..+|.+++|+|++++|++
T Consensus 235 ~i------~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 308 (397)
T 1sq9_A 235 SI------RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 308 (397)
T ss_dssp CE------EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred cc------ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence 11 123467889999999999 9999999999999999988 9999999999999999999
Q ss_pred EeCCCCEEEeecCCC
Q 022074 270 SSWDGDVVRWEFPGN 284 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~~ 284 (303)
++.||.|++||+...
T Consensus 309 ~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 309 AGWDGKLRFWDVKTK 323 (397)
T ss_dssp EETTSEEEEEETTTT
T ss_pred EeCCCeEEEEEcCCC
Confidence 999999999998643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=207.88 Aligned_cols=238 Identities=15% Similarity=0.195 Sum_probs=174.7
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
...||+.+|.+++| ++++++++|+.||.|++||+.++.....+..|...|.+++|++ +++.+++++.|+.|++|++..
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTC
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeee
Confidence 34799999999999 9999999999999999999999988888889999999999976 578999999999999999864
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC-CCCCccccC-
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY-PPQARDLKH- 191 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 191 (303)
.. .......+.+|...|.++.+ +++++++++.|+.|++||...... ... .....+..+.+ ++....+..
T Consensus 91 ~~-~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~--~~~----~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 91 TS-GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVY--NLQ----AHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp CT-TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEE--EEE----CCSSCEEEEEEEETTTTEEEEE
T ss_pred cC-CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEE--ecc----cCCCceeEEEEccCCCCEEEEE
Confidence 32 23456677889999999998 577999999999999999332111 000 00001111111 112222211
Q ss_pred CCCCcceEEecccceeeeE----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 192 PCDQSVATYKGHSVLRTLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
..+..+..++......... .......++++++ +++++.||.|++||+.+++.+..+..|..+|++++|+|++ .|
T Consensus 162 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 162 SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp ETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred ECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 1223333333211111100 0112234677887 8999999999999999999999999999999999999999 69
Q ss_pred EEEeCCCCEEEeecCCC
Q 022074 268 VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 268 as~s~Dg~i~~Wd~~~~ 284 (303)
++++.||.+++||+...
T Consensus 240 ~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEETTSEEEEECTTTC
T ss_pred EEEecCCEEEEEECCCC
Confidence 99999999999998654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=206.60 Aligned_cols=219 Identities=19% Similarity=0.233 Sum_probs=175.8
Q ss_pred chhhccccccccccCcCcc-cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 13 GTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
|+.|..+.+|++++..... .....+|..+|.+++| +++.+++++.||.|++|| .+.....+..|...+.+++|.+
T Consensus 77 ~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~ 152 (313)
T 3odt_A 77 GGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS 152 (313)
T ss_dssp EETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred ecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence 4566778888887765332 2234789999999999 578999999999999999 5666777888999999999987
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
.+++.+++++.|+.|++||.. .....+.. |...+.++.+++++. +++++.|+.|++||++....
T Consensus 153 ~~~~~l~~~~~d~~i~i~d~~------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-------- 217 (313)
T 3odt_A 153 FSENKFLTASADKTIKLWQND------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV-------- 217 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETT------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE--------
T ss_pred CCCCEEEEEECCCCEEEEecC------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh--------
Confidence 678899999999999999942 33445555 888999999999887 99999999999999874321
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
+..+.+|.... ....|+|++ .+++++.||.|++||+.+++.+..+..
T Consensus 218 --------------------------~~~~~~~~~~i------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~ 264 (313)
T 3odt_A 218 --------------------------LRTYEGHESFV------YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL 264 (313)
T ss_dssp --------------------------EEEEECCSSCE------EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC
T ss_pred --------------------------hhhhhcCCceE------EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec
Confidence 11222222111 123467787 589999999999999999999999999
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|..+|++++|+|+++ +++++.||.|++||+...
T Consensus 265 ~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 265 PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 999999999999998 667999999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-29 Score=223.90 Aligned_cols=229 Identities=15% Similarity=0.224 Sum_probs=179.7
Q ss_pred CchhhccccccccccCc------Ccc-cccCCCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEEecc---
Q 022074 12 SGTMESLANVTEIHDGL------DFS-AADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAH--- 80 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h--- 80 (303)
+++.|..+.||++-++. ... .....+|..+|.+++|+|+ +..+++++.||.|++||+.+++....+..|
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred EEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 34567788999987765 221 2233689999999999999 789999999999999999999887777666
Q ss_pred ---cCCeEEEEEccCCCcEEEEecCCC---eEEEEcCccccCCCccceeec-ccccCeEEEEeCC-CCCEEEEEeCCCcE
Q 022074 81 ---TSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRG-DGRYLISNGKDQAI 152 (303)
Q Consensus 81 ---~~~v~~l~~~~~~~~~l~s~s~dg---~v~lWd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~~~D~~v 152 (303)
...|.+++|+|+...++++++.|+ .|++||++.. ..+...+. +|...|.+++|+| ++.+|++++.|+.|
T Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v 287 (416)
T 2pm9_A 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNA---NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTV 287 (416)
T ss_dssp SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTST---TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCC---CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCE
Confidence 788999999876567999999999 9999998632 23455666 8999999999999 89999999999999
Q ss_pred EEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCC
Q 022074 153 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHD 231 (303)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~d 231 (303)
++||++.... +..+.+|.... ....|+|++ ++|++++.|
T Consensus 288 ~~wd~~~~~~----------------------------------~~~~~~~~~~v------~~~~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 288 LLWNPESAEQ----------------------------------LSQFPARGNWC------FKTKFAPEAPDLFACASFD 327 (416)
T ss_dssp EEECSSSCCE----------------------------------EEEEECSSSCC------CCEEECTTCTTEEEECCSS
T ss_pred EEeeCCCCcc----------------------------------ceeecCCCCce------EEEEECCCCCCEEEEEecC
Confidence 9999864321 12222222111 123467887 899999999
Q ss_pred CeEEEEECCCCeEEEEee-----------------------------------cCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 232 SCVYVYDLVSGEQVAALK-----------------------------------YHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~-----------------------------------~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
+.|++||+.+++...... .|..++++++|||+|++|++++.|++|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 999999998765321111 167788999999999999999999999
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
++|++..
T Consensus 408 ~~w~~~~ 414 (416)
T 2pm9_A 408 SITNPKI 414 (416)
T ss_dssp CCBCCCC
T ss_pred EEEEecc
Confidence 9999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=234.71 Aligned_cols=240 Identities=21% Similarity=0.260 Sum_probs=182.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||..+|.+++|+|+|+++++|+.||+|+|||+.+++....+..|...|.+++|+| ++++|++++.||.|++||..
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~--- 85 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYN--- 85 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETT---
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECC---
Confidence 68999999999999999999999999999999999998888889999999999976 57899999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC-CCccccCC-C
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP-QARDLKHP-C 193 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 193 (303)
.++....+.+|.+.|.+++|+|++++|++++.|+.|++||++........ +......+..+.+.| ....+... .
T Consensus 86 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 86 -TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT---FEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp -TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE---EECCSSCEEEEEEETTEEEEEEEEET
T ss_pred -CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE---EcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 34556678889999999999999999999999999999998753111000 000011111222222 22222111 1
Q ss_pred CCcceEEecccc--eeeeE----EEeeeeeeeC--CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 194 DQSVATYKGHSV--LRTLI----RCHFSPVYST--GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 194 ~~~~~~~~~~~~--~~~~~----~~~~~~~~s~--~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
+..+..++-... ..... .......++| ++.++++++.||.|++||..+++.+..+.+|..+|.+++|+|+++
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 222333221100 00000 0112234566 899999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCEEEeecCC
Q 022074 266 MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~ 283 (303)
+|++++.||.+++||...
T Consensus 242 ~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCeEEEEECCC
Confidence 999999999999999865
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-28 Score=219.48 Aligned_cols=216 Identities=15% Similarity=0.263 Sum_probs=162.0
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-----------eEEEEeccc------------CCeEEEEEc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----------LSLRILAHT------------SDVNTVCFG 90 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~ 90 (303)
++-.|..+|.+++|+|+|++|++|+.||.|+|||+.++. ....+.+|. +.|.+++|+
T Consensus 23 ~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 23 DDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp SCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred ccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence 335678899999999999999999999999999998876 356778898 889999998
Q ss_pred cCCC-cEEEEecCCCeEEEEcCccccCC----------C-------------------------cccee-ecccccCeEE
Q 022074 91 DESG-HLIYSGSDDNLCKVWDRRCLNVK----------G-------------------------KPAGV-LMGHLEGITF 133 (303)
Q Consensus 91 ~~~~-~~l~s~s~dg~v~lWd~~~~~~~----------~-------------------------~~~~~-~~~h~~~v~~ 133 (303)
++.. ..|++++.|++|++||+...... + .+... ..+|...|.+
T Consensus 103 ~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 6532 68999999999999997531110 0 00112 3579999999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEe
Q 022074 134 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH 213 (303)
Q Consensus 134 ~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (303)
+++++++++|+++ .|+.|++||++...... ......+ ..+.+|....
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~-------------~~~~~~~-------------~~~~~~~~~v------ 229 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSF-------------NIVDIKP-------------ANMEELTEVI------ 229 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEE-------------EEEECCC-------------SSGGGCCCCE------
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCcee-------------eeeeccc-------------ccccccCcce------
Confidence 9999999999998 79999999987321000 0000000 0111222111
Q ss_pred eeeeeeCCC-eEEEEEeCCCeEEEEECCCCeE----EEEeecCCC------------CeEEEEECCCCCeEEEEeCCCCE
Q 022074 214 FSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTS------------PVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 214 ~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~----~~~~~~h~~------------~I~~v~~sp~~~~las~s~Dg~i 276 (303)
....|+|++ ++|++|+.||.|++||+++++. +..+..|.. +|++++|+|++++|++++. +.+
T Consensus 230 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v 308 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSV 308 (447)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred EEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence 123467787 8999999999999999998886 678888876 8999999999999999999 999
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
++||+..
T Consensus 309 ~iwd~~~ 315 (447)
T 3dw8_B 309 KVWDLNM 315 (447)
T ss_dssp EEEETTC
T ss_pred EEEeCCC
Confidence 9999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-27 Score=206.82 Aligned_cols=240 Identities=15% Similarity=0.183 Sum_probs=176.9
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEe--cccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
.+|..+|.+++|+|+++++++++ ||.|++||+.++... ..+. .|...|.+++|++ +++++++++.|+.|++||
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEE
Confidence 48999999999999999999998 999999999876522 2222 7889999999975 578999999999999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
++.. .......+.+|...+.++.++++++++++++.|+.|++||++......... .....+..+.+.++...+.
T Consensus 126 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 126 LAAP--TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----GHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp CCCC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----CCSSCEEEEEECTTSSEEE
T ss_pred CCCC--CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee----cccCceEEEEECCCCCEEE
Confidence 8632 112345567888999999999999999999999999999997643222111 1111122334444443333
Q ss_pred CC-CCCcceEEecccceee-eEE---EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC
Q 022074 191 HP-CDQSVATYKGHSVLRT-LIR---CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 191 ~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
.. .+..+..++-...... ... ......++|+++++++++.|+.|++||+.+++. ..+..|..+|.+++|+|+++
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSS
T ss_pred EEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCC
Confidence 22 2223333332211100 000 112345789999999999999999999998775 45678999999999999999
Q ss_pred eEEEEeCCCCEEEeecCCC
Q 022074 266 MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~~ 284 (303)
+|++++.||.+++||+...
T Consensus 279 ~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEEEEETTSEEEEEETTTC
T ss_pred EEEEecCCCcEEEEECCCC
Confidence 9999999999999998754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=236.54 Aligned_cols=234 Identities=17% Similarity=0.226 Sum_probs=182.9
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCC--CCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l 87 (303)
+|+.|..+.||+.-.+.........||+.+|.+++|+++ ++.+++|+.||+|++||+.+++ ....+..|...|.++
T Consensus 26 tg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE
Confidence 356678899998753322223344799999999999988 9999999999999999999986 455677899999999
Q ss_pred EEccCC-CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-------------CCCEEEEEeCCCcEE
Q 022074 88 CFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-------------DGRYLISNGKDQAIK 153 (303)
Q Consensus 88 ~~~~~~-~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------------~~~~l~s~~~D~~v~ 153 (303)
+|+|+. ++.+++|+.||+|++||++... ......+.+|...|.++.++| ++.++++++.|+.|+
T Consensus 106 ~~sp~~~~~~l~sgs~dg~I~vwdl~~~~--~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~ 183 (753)
T 3jro_A 106 QWAPHEYGPLLLVASSDGKVSVVEFKENG--TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183 (753)
T ss_dssp EECCGGGCSEEEEEETTSEEEEEECCSSS--CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEE
T ss_pred EECCCCCCCEEEEEeCCCcEEEEEeecCC--CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEE
Confidence 997642 7899999999999999986432 223445678999999999999 589999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC---CeEEEEEeC
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSH 230 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~latg~~ 230 (303)
+||++....... ....+.+|.... ....|+|+ ++++++|+.
T Consensus 184 iwd~~~~~~~~~------------------------------~~~~~~~h~~~V------~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 184 IWKYNSDAQTYV------------------------------LESTLEGHSDWV------RDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEETTTTEEE------------------------------EEEEECCCSSCE------EEEEECCCCSSSEEEEEEES
T ss_pred EEeccCCcccce------------------------------eeeeecCCCCcE------EEEEeccCCCCCCEEEEEec
Confidence 999975321100 112223332211 12346778 899999999
Q ss_pred CCeEEEEECCCCe-----EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 231 DSCVYVYDLVSGE-----QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 231 dg~i~iwd~~~~~-----~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
||.|++||+.+++ .+.....|..+|++++|+|++++|++++.||.|++|++..
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999998864 2333346889999999999999999999999999999874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-28 Score=234.82 Aligned_cols=214 Identities=20% Similarity=0.288 Sum_probs=166.8
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC--CceEEEEecccCCeEEEEEccCC-CcEEEEecCCCeEEEEcC
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~--~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~lWd~ 111 (303)
..||+.+|.+++|+|+|+++++|+.||+|+|||+.+ +.....+.+|.+.|.+++|+++. ++.|++|+.||+|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 479999999999999999999999999999999984 45556778899999999997542 789999999999999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCC--CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGD--GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
+.. .......+.+|...|.++.++|+ ++++++++.|+.|++||++.......
T Consensus 85 ~~~--~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~------------------------ 138 (753)
T 3jro_A 85 ENG--RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------------------------ 138 (753)
T ss_dssp ETT--EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC------------------------
T ss_pred CCC--cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce------------------------
Confidence 632 11245567789999999999999 99999999999999999975421110
Q ss_pred cCCCCCcceEEecccceeeeEEEeeee---------eeeCCCeEEEEEeCCCeEEEEECCCC----eEEEEeecCCCCeE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSP---------VYSTGQKYIYTGSHDSCVYVYDLVSG----EQVAALKYHTSPVR 256 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~s~~~~~latg~~dg~i~iwd~~~~----~~~~~~~~h~~~I~ 256 (303)
..+.+|......+ .+.| ...+++.++++|+.||.|++||+.++ ..+..+.+|..+|+
T Consensus 139 --------~~~~~~~~~v~~l--~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~ 208 (753)
T 3jro_A 139 --------IIIDAHAIGVNSA--SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208 (753)
T ss_dssp --------EEEECCSSCEEEE--EECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred --------eEeecCCCceEEE--EecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence 0111111111111 1111 01125789999999999999999876 55667889999999
Q ss_pred EEEECCC---CCeEEEEeCCCCEEEeecCCC
Q 022074 257 DCSWHPS---QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 257 ~v~~sp~---~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|+|+ +++|++++.||.|++||+...
T Consensus 209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred EEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 9999999 899999999999999998754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=217.71 Aligned_cols=224 Identities=23% Similarity=0.392 Sum_probs=170.2
Q ss_pred cCCCcccce-EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 34 DDGGYSFGI-FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 34 ~~~~~~~~v-~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
...||..++ .++.+ +++++++|+.||+|++||+.+++....+.+|.+.|.+++|+++ + .+++|+.||+|++||++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETT
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECC
Confidence 336898886 55555 5789999999999999999999988889999999999999653 3 89999999999999986
Q ss_pred cccCCCccceeecccccCeEEEEeC--CCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSR--GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
.+.....+.+|...|.++++. +++.++++++.|++|++||++............ ........+..
T Consensus 192 ----~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~---- 258 (464)
T 3v7d_B 192 ----KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH-----DYPLVFHTPEE---- 258 (464)
T ss_dssp ----TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------C-----CSSEEESCGGG----
T ss_pred ----CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccC-----CcceEeeccCC----
Confidence 344566788899999999887 577899999999999999998643221110000 00000000000
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
....+..+.+|..... .+++++.++++|+.||.|++||+.+++.+..+.+|..+|.+++|+|++++|+++
T Consensus 259 --~~~~~~~~~~~~~~v~--------~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 259 --NPYFVGVLRGHMASVR--------TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp --CTTEEEEECCCSSCEE--------EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred --CeEEEEEccCccceEE--------EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 0011223334432211 124568899999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEeecCCC
Q 022074 271 SWDGDVVRWEFPGN 284 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~ 284 (303)
+.||.|++||+...
T Consensus 329 ~~dg~i~vwd~~~~ 342 (464)
T 3v7d_B 329 SMDTTIRIWDLENG 342 (464)
T ss_dssp ETTSCEEEEETTTT
T ss_pred eCCCcEEEEECCCC
Confidence 99999999998643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-28 Score=210.24 Aligned_cols=200 Identities=13% Similarity=0.134 Sum_probs=141.9
Q ss_pred ceEEEEEcCC----CCEEEEeeC--------------------CCeEEEEEC-CCCceEEEEecccCCeEEEEEcc--CC
Q 022074 41 GIFSLKFSTD----GRELVAGSS--------------------DDCIYVYDL-EANKLSLRILAHTSDVNTVCFGD--ES 93 (303)
Q Consensus 41 ~v~~l~~s~~----g~~l~sgs~--------------------Dg~v~lwd~-~~~~~~~~~~~h~~~v~~l~~~~--~~ 93 (303)
.|.+++|+|| ++++++++. |++|++|++ ++++....+..|...+..++|++ .+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5677777778 777777653 888999999 55777777778888888888865 24
Q ss_pred CcEEEEecCCCeEEEEcCccccCCCccceeecccc---cCeEEEEeCCCCCEE------------EEEeCCCcEEEEEcc
Q 022074 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL---EGITFIDSRGDGRYL------------ISNGKDQAIKLWDIR 158 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l------------~s~~~D~~v~lWdl~ 158 (303)
+++|+|++.|++|++||++ +++....+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..
T Consensus 193 ~~~LaSgS~D~TIkIWDl~----TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~ 268 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLK----TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK 268 (356)
T ss_dssp TTEEEEEETTSEEEEEETT----TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred CceEEEecCCCcEEEEECC----CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence 6899999999999999986 345566666543 467778899999876 568889999999986
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYD 238 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd 238 (303)
..+..... . ..+ | +||... .+. ..+ ++.++|+|+.|++|+|||
T Consensus 269 tgk~l~v~-------~-----~~~-p----------------~Gh~~~--~ls----g~~--sg~~lASgS~DgTIkIWD 311 (356)
T 2w18_A 269 TTLSVGVM-------L-----YCL-P----------------PGQAGR--FLE----GDV--KDHCAAAILTSGTIAIWD 311 (356)
T ss_dssp TTEEEEEE-------E-----ECC-C----------------TTCCCC--EEE----EEE--ETTEEEEEETTSCEEEEE
T ss_pred CCEEEEEE-------E-----eec-c----------------CCCcce--eEc----ccc--CCCEEEEEcCCCcEEEEE
Confidence 43211000 0 000 0 111100 011 111 266899999999999999
Q ss_pred CCCCeEEEEeecCCCCeE-EEEECCCCCeEEEEeCCCCEEEeec
Q 022074 239 LVSGEQVAALKYHTSPVR-DCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 239 ~~~~~~~~~~~~h~~~I~-~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
+.+++.+.++++|...+. .++||||+++|+||+.|++|++||+
T Consensus 312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999987665 5899999999999999999999995
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=210.80 Aligned_cols=230 Identities=16% Similarity=0.153 Sum_probs=174.8
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce---EEE-EecccCCeEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLR-ILAHTSDVNTV 87 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~---~~~-~~~h~~~v~~l 87 (303)
+++.|..+.||+.-++.........+|..+|.+++|+|+++++++++.|+.|++||+..+.. ... ...|...|.++
T Consensus 69 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 148 (372)
T 1k8k_C 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 148 (372)
T ss_dssp EEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred EEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence 34567788899885554222233478999999999999999999999999999999988762 222 35688999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCcccc--------------CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLN--------------VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
+|++ ++++|++++.|+.|++||++... ........+.+|...+.++.+++++++|++++.|+.|+
T Consensus 149 ~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 149 DWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 9975 57899999999999999964211 12344556678999999999999999999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
+||++.... +..+.++.... ....|+++++++++| .|+.
T Consensus 228 i~d~~~~~~----------------------------------~~~~~~~~~~v------~~~~~~~~~~~l~~~-~d~~ 266 (372)
T 1k8k_C 228 LADADKKMA----------------------------------VATLASETLPL------LAVTFITESSLVAAG-HDCF 266 (372)
T ss_dssp EEEGGGTTE----------------------------------EEEEECSSCCE------EEEEEEETTEEEEEE-TTSS
T ss_pred EEECCCCce----------------------------------eEEEccCCCCe------EEEEEecCCCEEEEE-eCCe
Confidence 999875321 11122221111 123366788888877 9999
Q ss_pred EEEEECCC--CeE--------------------------------E------EEe-ecCCCCeEEEEEC-CCC---CeEE
Q 022074 234 VYVYDLVS--GEQ--------------------------------V------AAL-KYHTSPVRDCSWH-PSQ---PMLV 268 (303)
Q Consensus 234 i~iwd~~~--~~~--------------------------------~------~~~-~~h~~~I~~v~~s-p~~---~~la 268 (303)
|++||+.+ ++. . ..+ .+|..+|++++|+ +++ ++|+
T Consensus 267 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~ 346 (372)
T 1k8k_C 267 PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 346 (372)
T ss_dssp CEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEE
T ss_pred EEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEE
Confidence 99999987 421 0 223 3899999999976 666 9999
Q ss_pred EEeCCCCEEEeecCC
Q 022074 269 SSSWDGDVVRWEFPG 283 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~ 283 (303)
|++.||.|++|++..
T Consensus 347 s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 347 TTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEETTSEEEEEEHHH
T ss_pred EecCCCceEEEEecC
Confidence 999999999999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-26 Score=207.75 Aligned_cols=241 Identities=15% Similarity=0.201 Sum_probs=168.9
Q ss_pred CCcccceEEEEEcCCCC-EEEEeeCCCeEEEEEC----CCCc------eEEEEec----------ccCCeEEEEEccCCC
Q 022074 36 GGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDL----EANK------LSLRILA----------HTSDVNTVCFGDESG 94 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~~ 94 (303)
..|..+|.+++|+|+|+ +|++|+.||.|++||+ .+++ ....+.. |...|.+++|++ ++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DG 120 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CC
Confidence 45668999999999999 9999999999999999 8887 3444443 677999999975 58
Q ss_pred cEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC-----
Q 022074 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG----- 169 (303)
Q Consensus 95 ~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~----- 169 (303)
++|++++.||.|++||. .......+.+|...|.++.+++++++|++++.|+.|++||++...........
T Consensus 121 ~~l~~~~~dg~i~i~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNK-----TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp SEEEEEETTSCEEEEET-----TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CEEEEEeCCCeEEEEeC-----CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 89999999999999993 34556678889999999999999999999999999999998753221111000
Q ss_pred -------------cccee------------------eec----------------eeeeCCCCCccccCCC-CCcceEEe
Q 022074 170 -------------FRSYE------------------WDY----------------RWMDYPPQARDLKHPC-DQSVATYK 201 (303)
Q Consensus 170 -------------~~~~~------------------~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~ 201 (303)
..... |+. ..+.+.+....+.... +..+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 00000 000 0111111111111110 11111121
Q ss_pred cccc-eeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 202 GHSV-LRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 202 ~~~~-~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
-... ...... ......+++++ ++++++.|+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 1100 000000 11234477888 89999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
++||+..
T Consensus 355 ~i~~~~~ 361 (425)
T 1r5m_A 355 NVYDLKK 361 (425)
T ss_dssp EEEECHH
T ss_pred EEEECCC
Confidence 9999864
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=215.85 Aligned_cols=263 Identities=13% Similarity=0.178 Sum_probs=178.6
Q ss_pred CchhhccccccccccCcCcc---------cccCCCcc------------cceEEEEEcCCC--CEEEEeeCCCeEEEEEC
Q 022074 12 SGTMESLANVTEIHDGLDFS---------AADDGGYS------------FGIFSLKFSTDG--RELVAGSSDDCIYVYDL 68 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------~~v~~l~~s~~g--~~l~sgs~Dg~v~lwd~ 68 (303)
+|+.|..+.||+.-++.... .....||+ .+|.+++|+|++ ..+++++.|++|++||+
T Consensus 45 ~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~ 124 (447)
T 3dw8_B 45 TGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKI 124 (447)
T ss_dssp EEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEE
T ss_pred EEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEec
Confidence 45677889999987665210 12235898 889999999998 79999999999999999
Q ss_pred CCCceE---------------------------------------EE-EecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 69 EANKLS---------------------------------------LR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 69 ~~~~~~---------------------------------------~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
.++... .. ..+|...|.+++|++ ++++|++| .|++|++
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~i 202 (447)
T 3dw8_B 125 SERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYLSA-DDLRINL 202 (447)
T ss_dssp EEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEE
T ss_pred ccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEE
Confidence 764431 11 357999999999976 57899998 7999999
Q ss_pred EcCccccCCCccce-------eecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCC----cccccCcc-----
Q 022074 109 WDRRCLNVKGKPAG-------VLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSN----ASCNLGFR----- 171 (303)
Q Consensus 109 Wd~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~----~~~~~~~~----- 171 (303)
||++... .... .+.+|...|.+++|+|++ ++|++++.|+.|++||++..... ........
T Consensus 203 wd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
T 3dw8_B 203 WHLEITD---RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRS 279 (447)
T ss_dssp EETTEEE---EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CC
T ss_pred EECCCCC---ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccc
Confidence 9986211 1111 356899999999999998 99999999999999999875431 11111000
Q ss_pred ---ceeeeceeeeCCCCCccccCCCCCcceEE------------ecccceee---------eEEEeeeeeeeCCCeEEEE
Q 022074 172 ---SYEWDYRWMDYPPQARDLKHPCDQSVATY------------KGHSVLRT---------LIRCHFSPVYSTGQKYIYT 227 (303)
Q Consensus 172 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~---------~~~~~~~~~~s~~~~~lat 227 (303)
.....+..+.+.+....+.......+..+ .+|..... .+...+...|+|++++|++
T Consensus 280 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s 359 (447)
T 3dw8_B 280 FFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMT 359 (447)
T ss_dssp HHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEE
T ss_pred cccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEE
Confidence 00002233445555444433222223323 22221100 0000112468899999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecC---------------------------------CCCeEEEEECCCCCeEEEEeCCC
Q 022074 228 GSHDSCVYVYDLVSGEQVAALKYH---------------------------------TSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~h---------------------------------~~~I~~v~~sp~~~~las~s~Dg 274 (303)
|+.||.|++||+.+++.+ .++.| ..+|.+++|||++++||+++.|+
T Consensus 360 ~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~ 438 (447)
T 3dw8_B 360 GSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN 438 (447)
T ss_dssp ECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC
T ss_pred eccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce
Confidence 999999999999998765 33333 35789999999999999998775
Q ss_pred CEEEeec
Q 022074 275 DVVRWEF 281 (303)
Q Consensus 275 ~i~~Wd~ 281 (303)
+.+|..
T Consensus 439 -~~~~~~ 444 (447)
T 3dw8_B 439 -LYIFQD 444 (447)
T ss_dssp -EEEEEC
T ss_pred -eeeecc
Confidence 777764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=212.29 Aligned_cols=218 Identities=23% Similarity=0.412 Sum_probs=175.5
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|... ....||..+|.+++| +++.+++|+.||+|++||+.+++....+..|...|.+++|+
T Consensus 148 ~g~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~- 222 (435)
T 1p22_A 148 SGLRDNTIKIWDKNTLECK--RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN- 222 (435)
T ss_dssp EEESSSCEEEEESSSCCEE--EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC-
T ss_pred EEeCCCeEEEEeCCCCeEE--EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc-
Confidence 4566788889988665432 234799999999999 78899999999999999999999888899999999999995
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
++.+++|+.||+|++||++.... ......+.+|...|.++++ +++++++++.|+.|++||++....
T Consensus 223 --~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--------- 288 (435)
T 1p22_A 223 --NGMMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF--------- 288 (435)
T ss_dssp --TTEEEEEETTSCEEEEECSSSSC-CEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE---------
T ss_pred --CCEEEEeeCCCcEEEEeCCCCCC-ceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE---------
Confidence 35899999999999999863221 1122567789999999988 778999999999999999875321
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 251 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h 251 (303)
+..+.+|......+ .+ ++.++++|+.||.|++||+.+++.+..+.+|
T Consensus 289 -------------------------~~~~~~~~~~v~~~------~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 289 -------------------------VRTLNGHKRGIACL------QY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp -------------------------EEEEECCSSCEEEE------EE--ETTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred -------------------------EEEEcCCCCcEEEE------Ee--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC
Confidence 11222222111111 12 3678999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..+|.+++| ++++|++|+.||.|++||+..
T Consensus 336 ~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 336 EELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp SSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred cCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 999999999 788999999999999999853
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=232.71 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=162.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||...|.+++|+|++++||+|+.||+|+||+..+..... ...|...|.+++|++ +++|++++.|++|++||++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~-- 88 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-KLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYS-- 88 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-ECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTT--
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-EcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCC--
Confidence 5899999999999999999999999999999998776543 345788999999986 66999999999999999862
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
++....+. |...|++++++|++++|++|+.|++|++||++..... .+...... .
T Consensus 89 --~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~----------~~~i~~~~-----~-------- 142 (902)
T 2oaj_A 89 --QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS----------SFKLDNLQ-----K-------- 142 (902)
T ss_dssp --CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE----------EEEECCHH-----H--------
T ss_pred --CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc----------cceecccc-----c--------
Confidence 33344443 6678999999999999999999999999998753210 00000000 0
Q ss_pred cceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEeecC------------------CCCeE
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------------TSPVR 256 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~h------------------~~~I~ 256 (303)
......+|.... .+..|+|+ +..+++|+.||.| +||+++++.+..+..| ..+|+
T Consensus 143 ~~~~~~~h~~~V------~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~ 215 (902)
T 2oaj_A 143 SSFFPAARLSPI------VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVI 215 (902)
T ss_dssp HHTCSSSCCCCC------CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEE
T ss_pred cccccccCCCCe------EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeE
Confidence 000011221111 12346664 5789999999999 9999999988887765 57899
Q ss_pred EEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 257 DCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 257 ~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++|+|++++|||++.||+|++||+...
T Consensus 216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 216 QSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999999999999999999998653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-27 Score=213.19 Aligned_cols=211 Identities=17% Similarity=0.287 Sum_probs=167.1
Q ss_pred CCcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCC----------CceEEEEecccCCeEEEEEccCCCcEEEEecCCC
Q 022074 36 GGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEA----------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 104 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg 104 (303)
.+|..+|.+++|+|+ +.++++++.||.|++||+.+ ......+.+|...|.+++|++....+|++|+.||
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 204 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH 204 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence 478899999999997 67999999999999999986 4556678899999999999875444999999999
Q ss_pred eEEEEcCccccCCC---ccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 105 LCKVWDRRCLNVKG---KPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 105 ~v~lWd~~~~~~~~---~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+|++||++...... .+...+.+|...|.+++|++ ++.+|++++.|+.|++||++.....
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----------------- 267 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----------------- 267 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-----------------
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-----------------
Confidence 99999986421111 12455678999999999999 6789999999999999999853210
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDC 258 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~-~~~~~~~~~h~~~I~~v 258 (303)
..+..+..|.... ....|+|+++ ++++|+.||.|++||+++ ++.+..+..|..+|+++
T Consensus 268 --------------~~~~~~~~~~~~v------~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i 327 (430)
T 2xyi_A 268 --------------KPSHTVDAHTAEV------NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327 (430)
T ss_dssp --------------SCSEEEECCSSCE------EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEE
T ss_pred --------------cceeEeecCCCCe------EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE
Confidence 0111222222111 1233667665 799999999999999987 45688888999999999
Q ss_pred EECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 259 SWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 259 ~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
+|+|+++ +|++++.|+.|++||+..
T Consensus 328 ~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 328 QWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 9999996 699999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=208.19 Aligned_cols=243 Identities=14% Similarity=0.162 Sum_probs=172.5
Q ss_pred CCCcccceEEEEEcCC----CCEEEEeeCCCeEEEEECCCCceEEEEec-----ccCCeEEEEEccCC---CcEEEEecC
Q 022074 35 DGGYSFGIFSLKFSTD----GRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDES---GHLIYSGSD 102 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~----g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~---~~~l~s~s~ 102 (303)
..||+.+|.+++|+|+ ...+++++.++.|++||+.+++....+.. |...|.+++|+++. +++|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4699999999999984 45677777788999999998776555543 55789999998653 468999999
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
||+|++||+. ..+....+.+|...|.++.|+| ++++|++++.|+.|++||++.......... .......+..+.
T Consensus 94 dg~i~v~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 RGIIRIINPI----TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-VEGHRDEVLSAD 168 (366)
T ss_dssp TCEEEEECTT----TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS-TTSCSSCEEEEE
T ss_pred CCEEEEEEch----hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc-cccccCceeEEE
Confidence 9999999975 3455667888999999999999 899999999999999999976432222100 011111222333
Q ss_pred CCCCCccccCC-CCCcceEEeccccee-----------------------------e----eEEEeeeeeeeCCCeEEEE
Q 022074 182 YPPQARDLKHP-CDQSVATYKGHSVLR-----------------------------T----LIRCHFSPVYSTGQKYIYT 227 (303)
Q Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~----~~~~~~~~~~s~~~~~lat 227 (303)
+.+....+... .+..+..++-..... . .........|+ +.++++
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 246 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILS 246 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEE
Confidence 44443333222 122333322110000 0 00000112234 678999
Q ss_pred EeCCCeEEEEECCCCe--------------EEEEeecCCCCeEEEEECCC--CCeEEEEeCCCCEEEeecCCC
Q 022074 228 GSHDSCVYVYDLVSGE--------------QVAALKYHTSPVRDCSWHPS--QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~--------------~~~~~~~h~~~I~~v~~sp~--~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++.|+.|++||+.+++ .+..+..|..+|++++|+|+ +++|++++.||.|++||+...
T Consensus 247 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 247 KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 9999999999998763 37788899999999999999 999999999999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-27 Score=214.88 Aligned_cols=207 Identities=13% Similarity=0.120 Sum_probs=157.6
Q ss_pred CCcccceEEEEEcC-CCCEEEEeeCCCeEEEEECCC---CceE--EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 36 GGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA---NKLS--LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 36 ~~~~~~v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~---~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
.||+.+|.+++|+| ++++|++|+.||+|+|||+.+ +... .....|...|.+++|++ +++.|++++.||+|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEE
Confidence 78999999999999 999999999999999999976 4311 12236899999999975 67899999999999999
Q ss_pred cCccccCCCccceeecc------------cccCeEEEE--eCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceee
Q 022074 110 DRRCLNVKGKPAGVLMG------------HLEGITFID--SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 175 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~------------h~~~v~~~~--~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~ 175 (303)
|+... ..+.....+.+ +...+.++. +++++.+|++++.|+.|++||++....
T Consensus 139 d~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------- 204 (437)
T 3gre_A 139 KVNHY-QQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER------------- 204 (437)
T ss_dssp EEEEE-EETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE-------------
T ss_pred Eeccc-cCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee-------------
Confidence 97411 01111111111 344566665 567899999999999999999875321
Q ss_pred eceeeeCCCCCccccCCCCCcceEEec--ccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCC
Q 022074 176 DYRWMDYPPQARDLKHPCDQSVATYKG--HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT 252 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~ 252 (303)
+..+.+ |.... ....|+|++++|++|+.||.|++||+++++.+..+. .|.
T Consensus 205 ---------------------~~~~~~~~h~~~v------~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 257 (437)
T 3gre_A 205 ---------------------LQIIENSPRHGAV------SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH 257 (437)
T ss_dssp ---------------------EEEEECCGGGCCE------EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC
T ss_pred ---------------------eEEEccCCCCCce------EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC
Confidence 112222 11111 123467889999999999999999999999988876 788
Q ss_pred CCeEEEEEC----CCCCeEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWH----PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~s----p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|++++|+ |++++|++++.||.|++||+...
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 899999655 56789999999999999998744
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-27 Score=212.75 Aligned_cols=216 Identities=27% Similarity=0.414 Sum_probs=170.8
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEecccCCeEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVC 88 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~ 88 (303)
+|+.|..+.||+.-+|... ....+|..+|.+++|++ +.+++|+.||+|++||+.++... ..+.+|...|.++.
T Consensus 188 sg~~dg~i~vwd~~~~~~~--~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGEML--NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EEETTSCEEEEESSSCCEE--EEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred EEcCCCeEEEEECCCCcEE--EEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence 4567888999998776533 23368999999999974 59999999999999999887644 55678999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
| +++.+++|+.||+|++||++ .......+.+|...|.++.+ +++++++++.|+.|++||++....
T Consensus 264 ~---~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~------ 328 (435)
T 1p22_A 264 F---DDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC------ 328 (435)
T ss_dssp E---ETTEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE------
T ss_pred e---CCCEEEEEeCCCeEEEEECC----cCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE------
Confidence 9 35799999999999999986 34556678889999999988 467999999999999999874321
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-----
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----- 243 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~----- 243 (303)
+..+.+|......+ ..++.+|++|+.||.|++||+.+++
T Consensus 329 ----------------------------~~~~~~h~~~v~~~--------~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 372 (435)
T 1p22_A 329 ----------------------------LRVLEGHEELVRCI--------RFDNKRIVSGAYDGKIKVWDLVAALDPRAP 372 (435)
T ss_dssp ----------------------------EEEECCCSSCEEEE--------ECCSSEEEEEETTSCEEEEEHHHHTSTTSC
T ss_pred ----------------------------EEEEeCCcCcEEEE--------EecCCEEEEEeCCCcEEEEECCCCCCcccc
Confidence 12222332211111 1257899999999999999997665
Q ss_pred ----EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 ----QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ----~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+..+.+|..+|++++| ++++|++++.||+|++||+...
T Consensus 373 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 373 AGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp TTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred ccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 78888999999999999 7889999999999999998754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-26 Score=208.05 Aligned_cols=204 Identities=14% Similarity=0.189 Sum_probs=163.3
Q ss_pred CcccceEEEEEcCCCCEE-EEeeCCCeEEEEECC--CCceEEEEe--cccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLE--ANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~--~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+|...|.+++|+|+|++| ++|+.||+|+|||+. ++.....+. .|...|.+++|+| ++++|++|+.+|.|++|++
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence 677789999999999996 899999999999998 777666555 5678999999975 5789999999999999998
Q ss_pred ccccCCCccceeecccccCeEEEEeCCC---CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGD---GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
............+.+|...|.+++|+|+ +.+|++++.|+.|++||++.......
T Consensus 179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----------------------- 235 (450)
T 2vdu_B 179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK----------------------- 235 (450)
T ss_dssp TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE-----------------------
T ss_pred CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee-----------------------
Confidence 6432221133467789999999999999 99999999999999999864321100
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-----------------
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH----------------- 251 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h----------------- 251 (303)
.+.+|.... ....|+ ++++|++|+.|+.|++||+.+++.+..+..+
T Consensus 236 ----------~~~~h~~~v------~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (450)
T 2vdu_B 236 ----------WLFGHKHFV------SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRF 298 (450)
T ss_dssp ----------ECCCCSSCE------EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----
T ss_pred ----------eecCCCCce------EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccc
Confidence 011222111 123467 8999999999999999999999988777632
Q ss_pred --------CCCeEEEEECCCCCeEEEEe-CCCCEEEeec
Q 022074 252 --------TSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 281 (303)
Q Consensus 252 --------~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~ 281 (303)
...|.+++|+|++++|++++ .|+.|++|++
T Consensus 299 ~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 299 QNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 35799999999999999999 8999999998
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=231.22 Aligned_cols=240 Identities=19% Similarity=0.281 Sum_probs=185.5
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
..||..+|.+++|+|+|+++++|+.||+|++||+.+++....+.+|...|.+++|+| +++++++++.|++|++||+.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~-- 687 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA-- 687 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT--
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECC--
Confidence 369999999999999999999999999999999999998888999999999999975 57899999999999999986
Q ss_pred cCCCccceeecccccCeEEEEeCC--CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRG--DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
+++....+.+|...|.++.|++ ++.++++++.|+.|++||++........ ......+..+.+.++...+...
T Consensus 688 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----~~h~~~v~~~~~sp~~~~l~s~ 761 (1249)
T 3sfz_A 688 --TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----FGHTNSVNHCRFSPDDELLASC 761 (1249)
T ss_dssp --TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE----CCCSSCEEEEEECSSTTEEEEE
T ss_pred --CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee----cCCCCCEEEEEEecCCCEEEEE
Confidence 3456677889999999999998 5568999999999999999764322211 1111222334455554444332
Q ss_pred C-CCcceEEeccccee-eeEE-----------------EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-cCC
Q 022074 193 C-DQSVATYKGHSVLR-TLIR-----------------CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-YHT 252 (303)
Q Consensus 193 ~-~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-~h~ 252 (303)
. +..+..++-..... .... ......|+++++++++++ ++.+.+||..++..+..+. +|.
T Consensus 762 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 762 SADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp ESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSS
T ss_pred ECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCC
Confidence 2 33444444322111 1111 111234788999888887 7899999999988877665 899
Q ss_pred CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 253 SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 253 ~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.+++|+|+++++++++.||.+++|++...
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~ 872 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=204.86 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEe-----ecCCCCeEEEEECCCCCeEEEEeCCCC----EEEeecCCC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAAL-----KYHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFPGN 284 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~-----~~h~~~I~~v~~sp~~~~las~s~Dg~----i~~Wd~~~~ 284 (303)
+++++++|+.||.|++||+.+++.+..+ ..|..+|++++|+|++.+||+++.||+ +.+||+...
T Consensus 371 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 371 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 4689999999999999999999988877 478889999999999999999999998 999998753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-25 Score=213.14 Aligned_cols=224 Identities=15% Similarity=0.233 Sum_probs=178.8
Q ss_pred hccccccccccCcCc--ccccCCCcccc-eEEEEEcC--CCCEEEEeeCCCeEEEEECCCC--------ceEEEEecccC
Q 022074 16 ESLANVTEIHDGLDF--SAADDGGYSFG-IFSLKFST--DGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTS 82 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~--------~~~~~~~~h~~ 82 (303)
+..+.||+.-+|... ......||..+ |.+++|+| ++++|++|+.||+|+|||+.++ .....+..|..
T Consensus 38 ~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 117 (615)
T 1pgu_A 38 GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAG 117 (615)
T ss_dssp TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSS
T ss_pred CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccc
Confidence 456788888666211 12234799999 99999999 9999999999999999999755 45566778999
Q ss_pred CeEEEEEccCCCcEEEEecCC----CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEc
Q 022074 83 DVNTVCFGDESGHLIYSGSDD----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-YLISNGKDQAIKLWDI 157 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~d----g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl 157 (303)
.|.+++|++ ++++|++++.+ +.|++||. ......+.+|...|.++.|+++++ ++++++.|+.|++||+
T Consensus 118 ~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~ 190 (615)
T 1pgu_A 118 PISDISWDF-EGRRLCVVGEGRDNFGVFISWDS------GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG 190 (615)
T ss_dssp CEEEEEECT-TSSEEEEEECCSSCSEEEEETTT------CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEET
T ss_pred cEEEEEEeC-CCCEEEEeccCCCCccEEEEEEC------CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeC
Confidence 999999975 57889999887 79999983 235667788999999999999998 8999999999999997
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYV 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~i 236 (303)
+.... +..+.+|..... ......|+|+ +++|++++.||.|++
T Consensus 191 ~~~~~----------------------------------~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 191 PPFKF----------------------------------SASDRTHHKQGS---FVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp TTBEE----------------------------------EEEECSSSCTTC---CEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred CCcce----------------------------------eeeecccCCCCc---eEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 64221 111222211000 0112347788 999999999999999
Q ss_pred EECCCCeEEEEe-e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 237 YDLVSGEQVAAL-K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 237 wd~~~~~~~~~~-~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
||+.+++.+..+ . .|..+|.+++|+ ++++|++++.|+.+++||+...
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~ 284 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS 284 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred EECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence 999999999888 6 899999999999 9999999999999999998743
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=200.41 Aligned_cols=223 Identities=11% Similarity=0.077 Sum_probs=154.5
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|+.+|.+++|+|||++|++|+.|+ ++|||+.++...... +...+..+++.+....++++++.|++|++||.+
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~--- 89 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV--- 89 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE--ECSCCCEEEECTTSSEEEEECSSTTEEEEEETT---
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee--ecCCeEEEEEcCCCCEEEEEECCccEEEEEECC---
Confidence 78999999999999999999998776 889999887654332 223577788865544445678889999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc-cCCcccccCccceeeeceeeeCCCCCccccC---
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM-SSNASCNLGFRSYEWDYRWMDYPPQARDLKH--- 191 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 191 (303)
.++....+. |...|.++.++++. ++.+ .|+.|++||++.. ........ ......+.+ ..+..
T Consensus 90 -~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-------~~~~~~~s~--~~la~~sg 155 (355)
T 3vu4_A 90 -KKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-------FGGVCEFSN--GLLVYSNE 155 (355)
T ss_dssp -TTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-------EEEEEEEET--TEEEEEES
T ss_pred -CCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-------CCceEEEEc--cEEEEeCC
Confidence 333444443 66789999998753 4443 4789999999865 22211111 000000000 00000
Q ss_pred CCCCc---------------------------ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe-EEEEECCCCe
Q 022074 192 PCDQS---------------------------VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC-VYVYDLVSGE 243 (303)
Q Consensus 192 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~-i~iwd~~~~~ 243 (303)
..+.. +..+.+|.... ....|+|++++|++|+.|++ |++||+.+++
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v------~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI------KMVRLNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEECCCSSCE------EEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce------EEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 01111 33344443221 23457899999999999998 9999999999
Q ss_pred EEEEee-c-CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALK-Y-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~-~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+..+. + |..+|++++|+|++++|++++.|+++++||+...
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999998 5 9999999999999999999999999999998654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=203.44 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=182.8
Q ss_pred chhhccccccccccCcCc-ccccCCCcccceEEEEEcCCCC-EEEEeeCCCeEEEEEC-CCCceEEEEec--ccCCeEEE
Q 022074 13 GTMESLANVTEIHDGLDF-SAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDL-EANKLSLRILA--HTSDVNTV 87 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~-~~~~~~~~~~~--h~~~v~~l 87 (303)
|+.|..+.||+.-++... ......+|..+|.+++|+|+++ ++++|+.||.|++||+ .++.. ..+.. |...|.++
T Consensus 29 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l 107 (342)
T 1yfq_A 29 TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRI 107 (342)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEE
T ss_pred EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEE
Confidence 456788889988666511 1223358999999999999999 9999999999999999 88765 56778 99999999
Q ss_pred EEccCCCcEEEEecCCCeEEEEcCccccCC-----CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc-cc
Q 022074 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK-MS 161 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~-~~ 161 (303)
+|++ ++.|++++.|+.|++||++..... .++...+. |...+.++++++++ +++++.|+.|++||++. ..
T Consensus 108 ~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~ 182 (342)
T 1yfq_A 108 CKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp EEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTT
T ss_pred EeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccc
Confidence 9976 789999999999999998631000 22333343 88899999999876 99999999999999986 33
Q ss_pred CCcccccCccceeeeceeeeCCC-CCccccCCC-C-----------------CcceEEecccceee---eEEEeeeeeee
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPP-QARDLKHPC-D-----------------QSVATYKGHSVLRT---LIRCHFSPVYS 219 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----------------~~~~~~~~~~~~~~---~~~~~~~~~~s 219 (303)
....... ......+..+.+.+ ....+.... + .....+.++..... .........|+
T Consensus 183 ~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 183 DNGTIEE--SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp CCCEEEE--CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred ccceeee--cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence 2111000 00111122233333 322221111 1 12223333221000 00011234578
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEeCCCC-EEEeec
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDGD-VVRWEF 281 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s~Dg~-i~~Wd~ 281 (303)
|++++|++|+.||.|++||+.+++.+..+..| ..+|++++ |++++|++++.||. .+.|..
T Consensus 261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 89999999999999999999999999999998 99999999 99999999999998 776664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-26 Score=221.29 Aligned_cols=261 Identities=15% Similarity=0.200 Sum_probs=191.2
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 93 (303)
+.+..+.||+.-+|.... ...+|..+|.+++|+|++++|++|+.||+|++||+.+++....+.+|.+.|.+++|+| +
T Consensus 32 ~~~g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~ 108 (814)
T 3mkq_A 32 LYSGRVEIWNYETQVEVR--SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-T 108 (814)
T ss_dssp ETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-S
T ss_pred eCCCEEEEEECCCCceEE--EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-C
Confidence 456778888876655332 2358999999999999999999999999999999999998888889999999999975 5
Q ss_pred CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
++.|++++.||+|++||++. .......+.+|...|.++.|+| ++.+|++++.|+.|++||++.............
T Consensus 109 ~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~- 184 (814)
T 3mkq_A 109 KPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE- 184 (814)
T ss_dssp SSEEEEEETTSEEEEEEGGG---TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCT-
T ss_pred CCEEEEEcCCCEEEEEECCC---CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCC-
Confidence 77999999999999999752 1234566778999999999999 888999999999999999976443322211110
Q ss_pred eeeeceeeeCCC--CCccccCC-CCCcceEEecccce-eeeEEE----eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 173 YEWDYRWMDYPP--QARDLKHP-CDQSVATYKGHSVL-RTLIRC----HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 173 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~----~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
..+..+.+.+ ....+... .+..+..++..... ...... .....|+|+++++++++.||.|++||..+++.
T Consensus 185 --~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 185 --RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp --TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred --CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 1112223332 33222221 22233333221110 011111 12345788999999999999999999999999
Q ss_pred EEEeecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecCC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~~ 283 (303)
+..+..|..++++++|+|+++. +++++.|+.+.+|++..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 9999999999999999999873 34555577788898654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=203.30 Aligned_cols=216 Identities=25% Similarity=0.410 Sum_probs=176.2
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+.-+|.... ...||..+|.++.|+ ++.+++|+.||+|++||+.+++....+.+|...|.++.+.
T Consensus 134 sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~- 208 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH- 208 (445)
T ss_dssp EEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-
T ss_pred EEECCCcEEEEECCCCcEEE--EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec-
Confidence 46678889999987765332 346999999999998 6799999999999999999999888888999999999994
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
++.+++|+.||+|++||++ ..+....+.+|...|.++.+ +++++++++.|+.|++||++....
T Consensus 209 --~~~l~s~s~dg~i~~wd~~----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--------- 271 (445)
T 2ovr_B 209 --EKRVVSGSRDATLRVWDIE----TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC--------- 271 (445)
T ss_dssp --TTEEEEEETTSEEEEEESS----SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE---------
T ss_pred --CCEEEEEeCCCEEEEEECC----CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE---------
Confidence 4579999999999999986 34456677889999999988 678999999999999999874321
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 251 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h 251 (303)
+..+.+|......+ .+ ++.++++|+.||.|++||+.+++.+..+.+|
T Consensus 272 -------------------------~~~~~~~~~~v~~~------~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 272 -------------------------LHTLQGHTNRVYSL------QF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp -------------------------EEEECCCSSCEEEE------EE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred -------------------------eEEecCCCCceEEE------EE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 11222222111111 12 5788999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...+.++.+ ++++|++++.||.|++||+...
T Consensus 319 ~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 319 QSLTSGMEL--KDNILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp CSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred cccEEEEEE--eCCEEEEEeCCCeEEEEECCCC
Confidence 999998887 4679999999999999998643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=208.66 Aligned_cols=217 Identities=9% Similarity=-0.061 Sum_probs=160.1
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC-----CeEEEEEccC
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-----DVNTVCFGDE 92 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-----~v~~l~~~~~ 92 (303)
..+.|++|+|..... -..+|+..|.+++|||+|+.||+++.||+|+|||.++ ....+. |+. .|.+++|+|
T Consensus 65 ~~~~~~~~~~~~~~~-~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP- 139 (588)
T 2j04_A 65 FENKLDFELAQQNGL-LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP- 139 (588)
T ss_dssp CCCTTTTSCCCSSCS-STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-
T ss_pred CcceEEEEeCCCceE-eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-
Confidence 346677777653321 1236688899999999999999999999999999644 444455 665 499999976
Q ss_pred CCcEEEEecCCCeEEEEcCccccCCCc---cceee----cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcc
Q 022074 93 SGHLIYSGSDDNLCKVWDRRCLNVKGK---PAGVL----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165 (303)
Q Consensus 93 ~~~~l~s~s~dg~v~lWd~~~~~~~~~---~~~~~----~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~ 165 (303)
++++|++|+.||+|++||+........ ....+ .+|.+.|.+++|+|+| +++++.|++|++||+......
T Consensus 140 DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~-- 215 (588)
T 2j04_A 140 IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ-- 215 (588)
T ss_dssp SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC--
T ss_pred CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc--
Confidence 589999999999999999864321000 13444 6788899999999998 889999999999998542210
Q ss_pred cccCccceeeeceeeeCCCCCccccCCCCCcceEEe-cccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
....++. +|.... ....|+ ++.||+++ +++|++||+.+++.
T Consensus 216 -----------------------------~~~~tL~~~h~~~V------~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 216 -----------------------------PVSRMIQNASRRKI------TDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp -----------------------------CCEEEEECCCSSCC------CCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred -----------------------------cceeeecccccCcE------EEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 0011121 221111 122355 47888887 69999999998876
Q ss_pred EEEeecCCCCeEEEEE--CCCCCeEEEEeCCCCEEEeecC
Q 022074 245 VAALKYHTSPVRDCSW--HPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~--sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.....+|...|.+++| +|++..|+++++||+ ++|...
T Consensus 258 ~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 258 SSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 3333389999999999 999999999999999 999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-26 Score=213.36 Aligned_cols=209 Identities=17% Similarity=0.161 Sum_probs=170.6
Q ss_pred ccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC----ceEEEEecccCC-eEEEEEccC-CCcEEEEecCCCeE
Q 022074 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHTSD-VNTVCFGDE-SGHLIYSGSDDNLC 106 (303)
Q Consensus 33 ~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~----~~~~~~~~h~~~-v~~l~~~~~-~~~~l~s~s~dg~v 106 (303)
+.+.+|...|.+++|+|+|+++++++ ++.|+|||+.++ +....+.+|... |.+++|+|. ++++|++++.||+|
T Consensus 12 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 12 PQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 34568999999999999999999998 889999999988 778888999999 999999751 57899999999999
Q ss_pred EEEcCccccC----CCccceeecccccCeEEEEeCCCCCEEEEEeCC----CcEEEEEcccccCCcccccCccceeeece
Q 022074 107 KVWDRRCLNV----KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYR 178 (303)
Q Consensus 107 ~lWd~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~ 178 (303)
++||+..... .......+.+|...|.+++|++++++|++++.| +.|++||....
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~------------------ 152 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS------------------ 152 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE------------------
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc------------------
Confidence 9999742100 123455677899999999999999999999988 68999984210
Q ss_pred eeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCCCeEEEEeecCCC---C
Q 022074 179 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVAALKYHTS---P 254 (303)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~h~~---~ 254 (303)
+..+.+|.... ....|+|+++ ++++++.|+.|++||..+++.+..+..|.. +
T Consensus 153 ------------------~~~~~~~~~~v------~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 153 ------------------LGEVSGHSQRI------NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208 (615)
T ss_dssp ------------------EEECCSCSSCE------EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred ------------------ceeeecCCccE------EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence 11112222111 1234677776 899999999999999999999999999999 9
Q ss_pred eEEEEECCC-CCeEEEEeCCCCEEEeecCCC
Q 022074 255 VRDCSWHPS-QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 255 I~~v~~sp~-~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++++|+|+ +++|++++.|+.+++||+...
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999 999999999999999998643
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=211.53 Aligned_cols=228 Identities=18% Similarity=0.261 Sum_probs=174.6
Q ss_pred CchhhccccccccccCcCc-----ccccCCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEE--ecccCC
Q 022074 12 SGTMESLANVTEIHDGLDF-----SAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRI--LAHTSD 83 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~--~~h~~~ 83 (303)
+|+.|..+.||++-+|... ......||..+|.+++|+|++ +.+++|+.||+|++||+.+++....+ ..|...
T Consensus 99 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 99 SGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 4566788999998776421 122336899999999999998 69999999999999999999888778 789999
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceee-cccccC-eEEEEeCCCCCEEEEE---eCCCcEEEEEcc
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL-MGHLEG-ITFIDSRGDGRYLISN---GKDQAIKLWDIR 158 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~l~s~---~~D~~v~lWdl~ 158 (303)
|.+++|++ ++++|++++.|+.|++||++. ......+ .+|... +..+.+++++.+|+++ +.|+.|++||++
T Consensus 179 v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 179 IYSVDWSR-DGALICTSCRDKRVRVIEPRK----GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp EEEEEECT-TSSCEEEEETTSEEEEEETTT----TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred eEEEEECC-CCCEEEEEecCCcEEEEeCCC----CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence 99999975 578999999999999999863 3344555 678776 8889999999999999 799999999997
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE-EEeCCCeEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVY 237 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-tg~~dg~i~iw 237 (303)
........ ........ ...+.|++++++|+ +|+.||.|++|
T Consensus 254 ~~~~~~~~-------------------------------~~~~~~~~-------v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 254 HLEEPLSL-------------------------------QELDTSSG-------VLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp BCSSCSEE-------------------------------EECCCCSS-------CEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred cccCCceE-------------------------------EeccCCCc-------eeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 53321000 00000000 11234778888886 45589999999
Q ss_pred ECCCCeE-EEEeec--CCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 238 DLVSGEQ-VAALKY--HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 238 d~~~~~~-~~~~~~--h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+.+++. +..+.. |..+|++++|+|++.++++ .|+.+++|++...
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 9998873 444443 5689999999999998876 4569999998653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-26 Score=201.03 Aligned_cols=224 Identities=8% Similarity=0.019 Sum_probs=160.8
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC---------CCceEEEE-ec
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---------ANKLSLRI-LA 79 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~---------~~~~~~~~-~~ 79 (303)
+-+|+.|..+.||+.-+|....... ..+|.++.|+|+ +++++.|++|++|+.. +++..... .+
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 3467788899999987776432111 456778888887 9999999999999665 44433333 36
Q ss_pred ccCCeEEEEEccC-CCcEEEEecCCCeEEEEcCccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 80 HTSDVNTVCFGDE-SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 80 h~~~v~~l~~~~~-~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
|.+.|.+++|+|. +++++++++.||+|++||++. ........ .|...+.+++++|++.+|++|+.|+.|++||+
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED----DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSS----SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC----CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 7788999999751 578999999999999999863 22333332 34557999999999999999999999999999
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEec-ccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG-HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYV 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~i 236 (303)
+...... ..+.+ |.... ....|+|++.+|++++ |+.|++
T Consensus 200 ~~~~~~~---------------------------------~~~~~~h~~~v------~~l~fs~~g~~l~s~~-~~~v~i 239 (343)
T 3lrv_A 200 SSPDQAS---------------------------------SRFPVDEEAKI------KEVKFADNGYWMVVEC-DQTVVC 239 (343)
T ss_dssp SCTTSCC---------------------------------EECCCCTTSCE------EEEEECTTSSEEEEEE-SSBEEE
T ss_pred CCCCCCc---------------------------------cEEeccCCCCE------EEEEEeCCCCEEEEEe-CCeEEE
Confidence 7543210 11111 22111 1234788999999999 559999
Q ss_pred EECCCCeEEEEeec---CCCCeE--EEEECCCCCeEEEEeC-CCCEEEeecCCC
Q 022074 237 YDLVSGEQVAALKY---HTSPVR--DCSWHPSQPMLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 237 wd~~~~~~~~~~~~---h~~~I~--~v~~sp~~~~las~s~-Dg~i~~Wd~~~~ 284 (303)
||+++++.+..+.. |..++. +++|+|++++|++++. |+.+++|++...
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 99998876544432 445555 6999999999999998 999999998543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=195.21 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=162.6
Q ss_pred Cchhhccccccccc---------cCcCcccccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCceEEEEe-c
Q 022074 12 SGTMESLANVTEIH---------DGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRIL-A 79 (303)
Q Consensus 12 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~ 79 (303)
+|+.|..+.||..- ++.-. .....+|..+|.+++|+| +++++++|+.||+|++||+.+++...... .
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 168 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVL-REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK 168 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEE-EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred EecCCCeEEEEEccCceEEeecCCccee-EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence 45667777777432 11101 122357778999999999 99999999999999999999988755443 4
Q ss_pred ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc-eeecc-cccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA-GVLMG-HLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
|...+.+++|+| ++.+|++|+.||+|++||++.. ... ..+.+ |...|.+++|+|++.+|++++ |+.|++||+
T Consensus 169 ~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 169 SDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP----DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp SSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT----TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEET
T ss_pred CCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC----CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEc
Confidence 556899999975 5889999999999999998732 223 45666 999999999999999999999 559999999
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC-CCeEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH-DSCVYV 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~-dg~i~i 236 (303)
+......... .+..+...... ....|+|++++|++++. |+.|++
T Consensus 243 ~~~~~~~~~~-------------------------------~~~~~~~~~~~----~~~~~~~~g~~l~~~s~~d~~i~v 287 (343)
T 3lrv_A 243 RKDVGTLAYP-------------------------------TYTIPEFKTGT----VTYDIDDSGKNMIAYSNESNSLTI 287 (343)
T ss_dssp TSSTTCBSSC-------------------------------CCBC-----CC----EEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCcceeec-------------------------------ccccccccccc----eEEEECCCCCEEEEecCCCCcEEE
Confidence 8643221100 00000000000 12347889999999998 999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEECC---CCCeEEEEeCCCCEEEeecC
Q 022074 237 YDLVSGEQVAALKYHTSPVRDCSWHP---SQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 237 wd~~~~~~~~~~~~h~~~I~~v~~sp---~~~~las~s~Dg~i~~Wd~~ 282 (303)
|++.+....... .++..++|+| +.+.|++++.|+.+.++-..
T Consensus 288 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 288 YKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 999765443222 5788999999 88999999999999988643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-25 Score=198.03 Aligned_cols=201 Identities=19% Similarity=0.327 Sum_probs=158.9
Q ss_pred CCcccc--eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 36 GGYSFG--IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 36 ~~~~~~--v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
.||... +.+++|++ +.+++++.|++|++||+.++.....+.. |...|.+++|++ ++++|++|+.||.|++||+.
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECc
Confidence 355543 55566764 5688899999999999999987665554 788999999976 57899999999999999975
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
.......+.+|...|.++++ +++++++++.|+.|++||++....
T Consensus 165 ----~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~------------------------------ 208 (401)
T 4aez_A 165 ----SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH------------------------------ 208 (401)
T ss_dssp ----TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC------------------------------
T ss_pred ----CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc------------------------------
Confidence 34456677899999999998 567999999999999999873211
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEe
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS 271 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s 271 (303)
.+..+.+|.... ....|++++++|++|+.|+.|++||+.+++.+..+..|..+|.+++|+|++. ++++++
T Consensus 209 ---~~~~~~~~~~~v------~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 209 ---QIGTLQGHSSEV------CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp ---EEEEEECCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred ---eeeEEcCCCCCe------eEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence 112222332211 1234678899999999999999999999999888999999999999999875 566655
Q ss_pred --CCCCEEEeecCCC
Q 022074 272 --WDGDVVRWEFPGN 284 (303)
Q Consensus 272 --~Dg~i~~Wd~~~~ 284 (303)
.|+.|++||+...
T Consensus 280 gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 280 GTMDKQIHFWNAATG 294 (401)
T ss_dssp CTTTCEEEEEETTTC
T ss_pred CCCCCEEEEEECCCC
Confidence 7999999998654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=198.25 Aligned_cols=237 Identities=9% Similarity=0.080 Sum_probs=158.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCC-------eEEEEECCCCce----------EEEEecccCCeEEEEEccCCCcEEEE---
Q 022074 40 FGIFSLKFSTDGRELVAGSSDD-------CIYVYDLEANKL----------SLRILAHTSDVNTVCFGDESGHLIYS--- 99 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg-------~v~lwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~~l~s--- 99 (303)
+||++++|+|||+.|++||.|. +|+||++..+.. ...+..|...|.++++. ++.+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~~ 91 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGCN 91 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEECC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEEC
Confidence 6899999999999999997543 599999876532 12345677888888874 234444
Q ss_pred --------ecCCCeEEEEcCccccCCCcccee-----ecccccCeEEEEeCCCCCEEEEE--eCCCcEEEEEcccccCCc
Q 022074 100 --------GSDDNLCKVWDRRCLNVKGKPAGV-----LMGHLEGITFIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 100 --------~s~dg~v~lWd~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~l~s~--~~D~~v~lWdl~~~~~~~ 164 (303)
++.|+++|+|++............ ...+...+.+++|+|||++++++ +.|++|++||++......
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 456888999986422111111111 12344568899999999997654 479999999997654332
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc---ceeeeE----EEeeeeeeeCCCeEEEEEeCCC----e
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS---VLRTLI----RCHFSPVYSTGQKYIYTGSHDS----C 233 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~s~~~~~latg~~dg----~ 233 (303)
.... ...+..+.+.|+.+.+....+..+..+.... ...... .......|+|+++++++++.|+ .
T Consensus 172 ~~~~-----~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 172 EIET-----RGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEC-----SSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EeCC-----CCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 2211 1123345566666665544443333322111 000000 0112345788999999999887 6
Q ss_pred EEEEECCCCeE----EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~----~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++||...... ...+.+|..+|++++||||+++||+|+.|++|++||+...
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~ 301 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL 301 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred EeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC
Confidence 89999876643 3456789999999999999999999999999999998753
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=199.17 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=156.4
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---eEEEEec-----------------------------------
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILA----------------------------------- 79 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---~~~~~~~----------------------------------- 79 (303)
+..++.+++|+++|++|+++ .++.|++||+.+++ ....+..
T Consensus 3 ~~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 3 VIHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp EECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred ccccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 34578999999999966655 67899999999887 4433332
Q ss_pred -------------------ccCCeEEEEEccCCCcE-EEEecCCCeEEEEcCccccCCCccceeec--ccccCeEEEEeC
Q 022074 80 -------------------HTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSR 137 (303)
Q Consensus 80 -------------------h~~~v~~l~~~~~~~~~-l~s~s~dg~v~lWd~~~~~~~~~~~~~~~--~h~~~v~~~~~~ 137 (303)
|.+.|.+++|+|+ ++. +++++.||+|++||+... .+.....+. .|...|.+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKT--SKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp ------------------CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSS--SSSCEEEEEEEECSSCEEEEEEC
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCC--CCceeeeeecccCCCCceEEEEc
Confidence 3336999999765 666 489999999999997510 223344444 566889999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeee
Q 022074 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 217 (303)
Q Consensus 138 ~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (303)
|++.+|++++.|+.+++|++........ ....+.+|.... ....
T Consensus 159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~------------------------------~~~~~~~h~~~v------~~~~ 202 (450)
T 2vdu_B 159 EDDTTVIIADKFGDVYSIDINSIPEEKF------------------------------TQEPILGHVSML------TDVH 202 (450)
T ss_dssp TTSSEEEEEETTSEEEEEETTSCCCSSC------------------------------CCCCSEECSSCE------EEEE
T ss_pred CCCCEEEEEeCCCcEEEEecCCcccccc------------------------------cceeeecccCce------EEEE
Confidence 9999999999999999999864321100 011122222111 1234
Q ss_pred eeCC---CeEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 218 YSTG---QKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 218 ~s~~---~~~latg~~dg~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+|+ +++|++|+.|+.|++||+.+++.+.. +.+|..+|++++|+ ++++|++++.|++|++||+...
T Consensus 203 ~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 203 LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 6778 89999999999999999999887766 56899999999999 9999999999999999998754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-26 Score=204.31 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=133.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-----EecccCCeEEEEEcc-------CCCcEEEEecCCC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-----ILAHTSDVNTVCFGD-------ESGHLIYSGSDDN 104 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-----~~~h~~~v~~l~~~~-------~~~~~l~s~s~dg 104 (303)
+|...+....++++++.+++|+.|++|+|||+.++..... +.+|.+.|++++|+| .++++|+||+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 4444444455556777899999999999999998864322 457999999999975 2478999999999
Q ss_pred eEEEEcCccccCCCccceeecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEEcccccCCcccccCc-cceeeeceeeeC
Q 022074 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWDIRKMSSNASCNLGF-RSYEWDYRWMDY 182 (303)
Q Consensus 105 ~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~-~~~~~~~~~~~~ 182 (303)
+|+|||++ ...+...+.+|...|.+++|+|++ .+|++++.|++|++||++............ ....+... ...
T Consensus 167 tv~~Wd~~----~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s-~~~ 241 (393)
T 4gq1_A 167 TLIIWRLT----DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT-LNT 241 (393)
T ss_dssp EEEEEEEE----TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE-EES
T ss_pred eEEEEECC----CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe-ccc
Confidence 99999975 233455667888999999999987 479999999999999998643321111000 00000000 000
Q ss_pred CCCCccccCCCCCcceEEecccceeeeEEEeeeeee-eCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVY-STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
. .........++..... ...+ +++++.+++++.|+++++||+.+++....+..|...+..+.++
T Consensus 242 ----~-----~~~~~~~~~~~~~~v~------~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~ 306 (393)
T 4gq1_A 242 ----L-----PLVNTCHSSGIASSLA------NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL 306 (393)
T ss_dssp ----G-----GGC------CCSSSCS------EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred ----c-----cceeeeecccccccce------eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence 0 0000011112211111 1112 3789999999999999999999887766666666655555544
Q ss_pred CC--------------------CCeEEEEeCCCCEEEeecCCC
Q 022074 262 PS--------------------QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~--------------------~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+ +.++++|+.||+|++||....
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~ 349 (393)
T 4gq1_A 307 PNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK 349 (393)
T ss_dssp CSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT
T ss_pred cccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC
Confidence 42 336788999999999998654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=188.74 Aligned_cols=218 Identities=17% Similarity=0.274 Sum_probs=143.8
Q ss_pred EEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC-CCccceeecccccCeEEEEeCCC
Q 022074 63 IYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV-KGKPAGVLMGHLEGITFIDSRGD 139 (303)
Q Consensus 63 v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 139 (303)
++++...+.+ +..++.+|.+.|++++|+|+.+++|+||+.|++|++||+..... ...+...+.+|...|.++.|+++
T Consensus 18 ~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp --------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC
Confidence 3334443433 34568899999999999887788999999999999999863321 12345667899999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CCCCcceEEecccceeeeE------EE
Q 022074 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQSVATYKGHSVLRTLI------RC 212 (303)
Q Consensus 140 ~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~ 212 (303)
+++|++++.|+.|++|+............... ......+.+....+.. ..+..+..++......... ..
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~ 173 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK----DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW 173 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred CCEEEEEcccccceEEeecccceeeeecCCCC----ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc
Confidence 99999999999999999875332111110000 0001111222221111 1112222221111000000 00
Q ss_pred eeeeeee--CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 213 HFSPVYS--TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 213 ~~~~~~s--~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.....++ +...++++++.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++++.|+.|++||+...
T Consensus 174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247 (340)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred ccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence 0111233 33567899999999999999999999999999999999999999999999999999999998654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=218.85 Aligned_cols=256 Identities=11% Similarity=0.116 Sum_probs=169.9
Q ss_pred CchhhccccccccccCcCcccc----c-----CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc----------
Q 022074 12 SGTMESLANVTEIHDGLDFSAA----D-----DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------- 72 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---------- 72 (303)
+|+.|..+.+|++-+|.-.... + ..||+..|.+++|+|||++||+|+.||+|+|||+.+++
T Consensus 452 Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 452 TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 5678899999998777311000 0 12899999999999999999999999999999997662
Q ss_pred -----------------------------------eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 73 -----------------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 73 -----------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
....+.+|.+.|++++|+| ++ +|++|+.|++|+|||++.....
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAII 609 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEE
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEE
Confidence 2345677999999999975 57 9999999999999997532110
Q ss_pred C-ccceeec-ccccCeEEEEeC-----CCC---CEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 118 G-KPAGVLM-GHLEGITFIDSR-----GDG---RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 118 ~-~~~~~~~-~h~~~v~~~~~~-----~~~---~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
. .....+. +|.+.|++++|+ +|| .+|++|+.|++|++||+.... ...+...+... ........
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~-~g~~~~~~~~~------~~~~~~~~ 682 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPAS-GGKFDVQLMDI------TNVTSKGP 682 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECG-GGCEEEEEEEE------EECCSSCC
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCC-CCcEEEEecCc------eecCCCCc
Confidence 0 0112343 899999999999 885 899999999999999983211 11110000000 00000000
Q ss_pred cccCCCCCcceEEecccceeeeE--E--EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE---E-
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLI--R--CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC---S- 259 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v---~- 259 (303)
. ..+..++......... . ....+...+++.+|+++ +..|+||++.+++.+...-.|...+.++ .
T Consensus 683 v------~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~ 754 (902)
T 2oaj_A 683 I------HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFKYPLAATGLSYIST 754 (902)
T ss_dssp C------CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECSSCEEEEEEEEEEE
T ss_pred e------EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcccceeeeEEEEEEe
Confidence 0 0011111000000000 0 00011122456655555 7789999999998876665666667776 6
Q ss_pred -----ECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 260 -----WHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 260 -----~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|++++..|++.+.||+|++|+++.-
T Consensus 755 ~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l 784 (902)
T 2oaj_A 755 VEKNNDRKNLTVIITLEINGHLRVFTIPDF 784 (902)
T ss_dssp ECSSSCEEEEEEEEEEETTSEEEEEETTTC
T ss_pred ccccccccCceEEEEEeCCCcEEEEECcch
Confidence 7899999999999999999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=190.69 Aligned_cols=228 Identities=16% Similarity=0.196 Sum_probs=154.5
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEE
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNT 86 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~ 86 (303)
-+|+.|..+.||+.-+|.........||+.+|.+++|++ +++.|++|+.|++|+|||+.++. ....+.+|...|.+
T Consensus 29 asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~ 108 (316)
T 3bg1_A 29 ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS 108 (316)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCE
T ss_pred EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEE
Confidence 356788899999986664321234479999999999986 48999999999999999998874 44556789999999
Q ss_pred EEEccCC-CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-----------------CCEEEEEeC
Q 022074 87 VCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-----------------GRYLISNGK 148 (303)
Q Consensus 87 l~~~~~~-~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------------~~~l~s~~~ 148 (303)
++|+|+. +.+|++|+.|++|++||++... .......+.+|...|.+++|+|+ +.+|++++.
T Consensus 109 v~~~p~~~g~~lasgs~D~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 109 VCWAPHDYGLILACGSSDGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp EEECCTTTCSCEEEECSSSCEEEEEECSSS-CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred EEECCCCCCcEEEEEcCCCCEEEEecCCCC-CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 9998753 6799999999999999976321 11123455688889999999886 468999999
Q ss_pred CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC----ccccC-CCCCcceEEecccc-----eeeeEE----Eee
Q 022074 149 DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA----RDLKH-PCDQSVATYKGHSV-----LRTLIR----CHF 214 (303)
Q Consensus 149 D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~-----~~~~~~----~~~ 214 (303)
|++|++||++.... ......+......+..+.+.|.. ..+.. ..+..+..++.... ....+. ..+
T Consensus 188 D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVW 266 (316)
T ss_dssp TSBCCEEEECTTSC-EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEE
T ss_pred CCeEEEEEeCCCCc-cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEE
Confidence 99999999864210 00000111111223334444432 22222 22333444432210 001111 123
Q ss_pred eeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 215 SPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 215 ~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
...|+|++++||+|+.|+.|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 45688999999999999999999975
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=200.28 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=142.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
-.+.+|.+++|+|||+++|+++.|++|+ |.+.++. +.+|...|.+++|+|+ + .++.+.+|+.+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPd-g-------~~~~~~~~~~~---- 75 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPL-E-------FENKLDFELAQ---- 75 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECC-C-------CCCTTTTSCCC----
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCC-C-------CcceEEEEeCC----
Confidence 3456799999999999999999999999 7666643 4689999999999874 4 45555555532
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
+..... ..|.+.|.+++|+|+|.+|++++.||.|++||....
T Consensus 76 -~~~~~~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~------------------------------------ 117 (588)
T 2j04_A 76 -QNGLLN-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKM------------------------------------ 117 (588)
T ss_dssp -SSCSST-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEE------------------------------------
T ss_pred -CceEee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCce------------------------------------
Confidence 111111 156788999999999999999999999999995320
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe-------EEEEe----ecCCCCeEEEEECCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-------QVAAL----KYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-------~~~~~----~~h~~~I~~v~~sp~~~ 265 (303)
+..+. |...... +...+..|||+|++||+|+.||+|++||+.+++ .+.++ .+|..+|.+++||||+
T Consensus 118 l~~l~-~~~~~~~-~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg- 194 (588)
T 2j04_A 118 LTNLD-SKGNLSS-RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV- 194 (588)
T ss_dssp EEECC-CSSCSTT-TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-
T ss_pred eeecc-CCCcccc-ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-
Confidence 00001 0000000 000134588999999999999999999998875 35666 5778899999999999
Q ss_pred eEEEEeCCCCEEEeecCCCC
Q 022074 266 MLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~~~ 285 (303)
+++++.|+++++|++.+..
T Consensus 195 -Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 195 -LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp -EEEEETTCCEEEECCCSSS
T ss_pred -EEEEeCCCeEEEEECCCCc
Confidence 8899999999999987654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-23 Score=185.95 Aligned_cols=197 Identities=18% Similarity=0.339 Sum_probs=152.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE--ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
+.+..|+||++ +.|++|. |++|+|||+.+++....+ .+|...|++++|++ ++++|++|+.||+|++||++ .
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~----~ 178 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQ----Q 178 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETT----T
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcC----C
Confidence 45778999975 5677664 999999999999866544 46778899999975 58899999999999999986 3
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
++....+.+|...+.++++ ++.+|++++.|+.+++||.+.... .+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~---------------------------------~~ 223 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH---------------------------------HV 223 (420)
T ss_dssp TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---------------------------------EE
T ss_pred CcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccce---------------------------------ee
Confidence 4566778899999998876 467999999999999999764211 12
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeEEEEECCCCC-eEEE--E
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE----QVAALKYHTSPVRDCSWHPSQP-MLVS--S 270 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~----~~~~~~~h~~~I~~v~~sp~~~-~las--~ 270 (303)
..+.+|..... ...++++++++++++.|+.+++||..+++ .+.....|...|.+++|+|++. ++++ |
T Consensus 224 ~~~~~h~~~~~------~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g 297 (420)
T 4gga_A 224 ATLSGHSQEVC------GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297 (420)
T ss_dssp EEEECCSSCEE------EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC
T ss_pred EEeccccccee------eeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee
Confidence 23333332111 12356789999999999999999998765 3456678999999999999875 5554 4
Q ss_pred eCCCCEEEeecCCC
Q 022074 271 SWDGDVVRWEFPGN 284 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~ 284 (303)
+.|++|++||+...
T Consensus 298 s~D~~I~iwd~~t~ 311 (420)
T 4gga_A 298 TSDRHIRIWNVCSG 311 (420)
T ss_dssp TTTCEEEEEETTTT
T ss_pred cCCCEEEEEeCCcc
Confidence 57999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=181.94 Aligned_cols=256 Identities=13% Similarity=0.064 Sum_probs=179.4
Q ss_pred hccccccccccCcCcccc---cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC
Q 022074 16 ESLANVTEIHDGLDFSAA---DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~ 92 (303)
+..+.+|+.-+|...... ...+|...|.+++|+++++.+++++.|+.|++||+++++....+..|...+.+++|+++
T Consensus 143 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 455777777555432111 22589999999999999999999999999999999999888888889999999999865
Q ss_pred CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe--------CCCcEEEEEcccccCCc
Q 022074 93 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--------KDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 93 ~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--------~D~~v~lWdl~~~~~~~ 164 (303)
...++++++.|+.|++||++. ++....+.. ...+..++++++++++++++ .|+.|++||++..+...
T Consensus 223 ~~~l~~~~~~~~~i~~~d~~~----~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~ 297 (433)
T 3bws_A 223 RDLVYCSNWISEDISVIDRKT----KLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID 297 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTT----TEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE
T ss_pred CCEEEEEecCCCcEEEEECCC----CcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe
Confidence 444446777899999999862 233333433 34588999999999999888 58899999987543211
Q ss_pred ccccCccceeeeceeeeCCCCCccccC--CCCCcceEEecccce-eeeEE---EeeeeeeeCCCeEEEEEeC--------
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKH--PCDQSVATYKGHSVL-RTLIR---CHFSPVYSTGQKYIYTGSH-------- 230 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~s~~~~~latg~~-------- 230 (303)
.. ........+.+.+..+.+.. ..+..+..++-.... ...+. ......++|+++++++++.
T Consensus 298 ~~-----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 298 TI-----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EE-----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred ec-----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 11 00111223344454433221 223333334322110 01111 1123457899998888876
Q ss_pred -------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC-CCCEEEeecC
Q 022074 231 -------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW-DGDVVRWEFP 282 (303)
Q Consensus 231 -------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~-Dg~i~~Wd~~ 282 (303)
||.|++||..+++.+..+.. ...+.+++|+|++++|++++. |+.+++|++.
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 57999999999998888875 457999999999999988875 9999999975
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-22 Score=178.03 Aligned_cols=258 Identities=12% Similarity=0.097 Sum_probs=176.2
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
+++.+..+.||+.-+|.... ...+|. .+.+++|+|+|+++ ++++.|++|++||+.+++....+..+. .+.+++|+
T Consensus 7 s~~~d~~v~v~d~~~~~~~~--~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~s 82 (391)
T 1l0q_A 7 ANSESDNISVIDVTSNKVTA--TIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (391)
T ss_dssp EETTTTEEEEEETTTTEEEE--EEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EcCCCCEEEEEECCCCeEEE--EeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEEC
Confidence 34566788888886664332 113443 48999999999987 667799999999999998776665554 89999998
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccC
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
++...++++++.++.|++||+.. ++....+. +...+..++++++++++ ++++.|+.|++||++..........+
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~----~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 157 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTS----NTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTT----TEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred CCCCEEEEEECCCCEEEEEECCC----CeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC
Confidence 65443456777889999999762 23333343 34568899999999977 78888999999998754322221111
Q ss_pred ccceeeeceeeeCCCCCcccc-C-CCCCcceEEeccccee-eeE---EEeeeeeeeCCCeEEEEEe---CCCeEEEEECC
Q 022074 170 FRSYEWDYRWMDYPPQARDLK-H-PCDQSVATYKGHSVLR-TLI---RCHFSPVYSTGQKYIYTGS---HDSCVYVYDLV 240 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~s~~~~~latg~---~dg~i~iwd~~ 240 (303)
. ....+.+.++...+. . ..+..+..++...... ... .......++++++++++++ .++.|++||+.
T Consensus 158 ~-----~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 158 R-----SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp S-----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred C-----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 1 112233444444331 1 1222333333221110 011 0112345788999888887 69999999999
Q ss_pred CCeEEEEeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCCC
Q 022074 241 SGEQVAALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 241 ~~~~~~~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~~ 284 (303)
+++.+..+..|. .+.+++|+|++++| ++++.|+.+++||+...
T Consensus 233 ~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 233 TNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp TTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 999888888765 57999999999876 77789999999998743
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=180.34 Aligned_cols=227 Identities=12% Similarity=0.131 Sum_probs=151.1
Q ss_pred CchhhccccccccccCcCcc--cccCCCcccceEEEEEcC--CCCEEEEeeCCCeEEEEECCCC---------ceEEEEe
Q 022074 12 SGTMESLANVTEIHDGLDFS--AADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEAN---------KLSLRIL 78 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~---------~~~~~~~ 78 (303)
+|+.|..+.||+.-++.... .....+|..+|.+++|+| ++++|++|+.||+|++||+.++ .....+.
T Consensus 28 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 28 TCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp EEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred EeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec
Confidence 45678889999986654321 222368999999999999 6999999999999999999887 4456677
Q ss_pred cccCCeEEEEEccCC-CcEEEEecCCCeEEEEcCccccCCC---------------------------------------
Q 022074 79 AHTSDVNTVCFGDES-GHLIYSGSDDNLCKVWDRRCLNVKG--------------------------------------- 118 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~-~~~l~s~s~dg~v~lWd~~~~~~~~--------------------------------------- 118 (303)
.|...|.+++|+++. +++|++++.||.|++||++......
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 187 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEE
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEE
Confidence 899999999997542 7899999999999999975322100
Q ss_pred -----------------ccceeecccccCeEEEEeCCCC----CEEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 119 -----------------KPAGVLMGHLEGITFIDSRGDG----RYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 119 -----------------~~~~~~~~h~~~v~~~~~~~~~----~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
.....+.+|...|.+++++|++ ++|++++.|+.|++||++................
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 264 (351)
T 3f3f_A 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN--- 264 (351)
T ss_dssp EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee---
Confidence 0133455788999999999998 8999999999999999986422111100000000
Q ss_pred eeeeCCCCCcccc----------------CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 178 RWMDYPPQARDLK----------------HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 178 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
............ ......+..+.+|.... ....|+|++++|++|+.||.|++||+.+
T Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 265 -MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV------WSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCE------EEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred -ccCCCcccccccccccccccceeeeecccccccEEEEEecccccE------EEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 000000000000 00001222333333211 2345788999999999999999999998
Q ss_pred CeEEEEe
Q 022074 242 GEQVAAL 248 (303)
Q Consensus 242 ~~~~~~~ 248 (303)
++.+..+
T Consensus 338 ~~~~~~~ 344 (351)
T 3f3f_A 338 SNEFKCM 344 (351)
T ss_dssp TSCEEEE
T ss_pred Ccchhhe
Confidence 7654443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-22 Score=181.70 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=148.0
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCC---CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 88 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~ 88 (303)
+++.|..+.||+.-+|.... ...|...+.++.|++. +..+++++.||.|++||+.++.....+..|...|.+++
T Consensus 117 s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTAD---VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEETTSEEEEEETTTTEEEE---EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEeCCCeEEEeeCCCCccce---eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 45667788889886554332 1236778999999984 45999999999999999999988888889999999999
Q ss_pred EccCCCcEEEEecCCCeEEEEcCccccC------------CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 89 FGDESGHLIYSGSDDNLCKVWDRRCLNV------------KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 89 ~~~~~~~~l~s~s~dg~v~lWd~~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
|+|+...+|++++.||.|++||++.... .......+.+|...|.++++++++++|++++.|+.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 9876555799999999999999863221 0111222357889999999999999999999999999999
Q ss_pred cccccCCcccccCccc-eeeeceeee-CCCCCccccCCCC-----------CcceEEecccceeeeEEEeeeeeeeCCCe
Q 022074 157 IRKMSSNASCNLGFRS-YEWDYRWMD-YPPQARDLKHPCD-----------QSVATYKGHSVLRTLIRCHFSPVYSTGQK 223 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 223 (303)
++.............. ......... .......+....+ ..+..+.+|.... ....|+|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v------~~~~~s~~~~ 347 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTV------DCCVFQSNFQ 347 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCE------EEEEEETTTT
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeE------EEEEEcCCCC
Confidence 9864332111000000 000000000 0000000111111 1222333332111 2345789999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC-CCeEEEEeCCCCEEEeecC
Q 022074 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 224 ~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~ 282 (303)
+|++|+.||.|++||+.+++.+.....+. ....++|. ...+.+.+.|+.+++|+.+
T Consensus 348 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 348 ELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEEETTSCEEEEEECC------------------------------------------
T ss_pred EEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCCc
Confidence 99999999999999999988765544332 22334443 3456677889999999865
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-22 Score=171.87 Aligned_cols=196 Identities=18% Similarity=0.308 Sum_probs=149.8
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE--ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI--LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
.+.+|+||+++ .|++| .|++|+|||+.+++....+ .+|...|.+++|++ ++++|++|+.||+|++||++ .+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~----~~ 99 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQ----QQ 99 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETT----TT
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecC----Cc
Confidence 36789999876 66665 5999999999999876554 46778899999975 58899999999999999986 34
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
+....+.+|...+.+++. ++..+++++.++.+++|+...... .+.
T Consensus 100 ~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~---------------------------------~~~ 144 (318)
T 4ggc_A 100 KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH---------------------------------HVA 144 (318)
T ss_dssp EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---------------------------------EEE
T ss_pred eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCce---------------------------------eEE
Confidence 556778889988887655 567999999999999998753211 112
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE----EEEeecCCCCeEEEEECCCCCe---EEEEe
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ----VAALKYHTSPVRDCSWHPSQPM---LVSSS 271 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~----~~~~~~h~~~I~~v~~sp~~~~---las~s 271 (303)
.+.+|..... ...++++++++++++.|+.|++||+.+++. ......|..+|..++|+|++.. +++++
T Consensus 145 ~~~~~~~~~~------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 218 (318)
T 4ggc_A 145 TLSGHSQEVC------GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218 (318)
T ss_dssp EEECCSSCEE------EEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT
T ss_pred EEcCccCceE------EEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC
Confidence 2233322111 123567889999999999999999987652 3455678889999999998763 45778
Q ss_pred CCCCEEEeecCCC
Q 022074 272 WDGDVVRWEFPGN 284 (303)
Q Consensus 272 ~Dg~i~~Wd~~~~ 284 (303)
.++++++||....
T Consensus 219 ~~~~i~lwd~~~~ 231 (318)
T 4ggc_A 219 SDRHIRIWNVCSG 231 (318)
T ss_dssp TTCEEEEEETTTC
T ss_pred CCCEEEEEecccc
Confidence 8999999997654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=177.55 Aligned_cols=203 Identities=10% Similarity=0.110 Sum_probs=145.6
Q ss_pred ceEEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC----------------CC---------
Q 022074 41 GIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE----------------SG--------- 94 (303)
Q Consensus 41 ~v~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~----------------~~--------- 94 (303)
++..+.+.++++.+ ++|+.|++|+|||+.+++....+. |...|.+++++++ ..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc
Confidence 47778888888876 568889999999999998776554 5667888777532 01
Q ss_pred ---------cEEEE--ecCCCeEEEEcCccccC-----------CCcc-ceeecccccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 95 ---------HLIYS--GSDDNLCKVWDRRCLNV-----------KGKP-AGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 95 ---------~~l~s--~s~dg~v~lWd~~~~~~-----------~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
..++. |+.||+|++||++.... ...+ ...+.+|...|.+++|+|++++|++++.|++
T Consensus 139 ~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 139 FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 23333 67888889998753210 0012 5678899999999999999999999999999
Q ss_pred -EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEe-c-ccceeeeEEEeeeeeeeCCCeEEEEE
Q 022074 152 -IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-G-HSVLRTLIRCHFSPVYSTGQKYIYTG 228 (303)
Q Consensus 152 -v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~~~~~latg 228 (303)
|++||++.... +..+. + |.... ....|+|++++|+++
T Consensus 219 ~v~iwd~~~~~~----------------------------------~~~~~~g~h~~~v------~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 219 IIRVFKTEDGVL----------------------------------VREFRRGLDRADV------VDMKWSTDGSKLAVV 258 (355)
T ss_dssp EEEEEETTTCCE----------------------------------EEEEECTTCCSCE------EEEEECTTSCEEEEE
T ss_pred EEEEEECCCCcE----------------------------------EEEEEcCCCCCcE------EEEEECCCCCEEEEE
Confidence 99999874321 12222 2 22111 233578899999999
Q ss_pred eCCCeEEEEECCCCeE--EEEee---------------------cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 229 SHDSCVYVYDLVSGEQ--VAALK---------------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 229 ~~dg~i~iwd~~~~~~--~~~~~---------------------~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.|++|++||+..+.. ...+. .+..+...++|+|++++|++++.||.+++|++...
T Consensus 259 s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 9999999999976531 11111 11234577999999999999999999999998644
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-21 Score=173.58 Aligned_cols=232 Identities=14% Similarity=0.039 Sum_probs=163.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-----EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+.+++|+|++..+++++.|++|++||+.+++... .+.+|...|.+++|+ ++++++++++.|+.|++||++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~--- 199 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLK--- 199 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETT---
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECC---
Confidence 45689999977788888889999999999988765 234678899999995 467899999999999999975
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC- 193 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 193 (303)
..+....+..|...+.++++++++++++ +++.|+.|++||++........... .....+.+.+....+....
T Consensus 200 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 200 -TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-----GLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp -TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-----SEEEEEEECTTSSEEEEEEE
T ss_pred -CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-----CCceEEEEcCCCCEEEEEEC
Confidence 3344556667888999999999998885 5558999999998754322211111 0122233444433332211
Q ss_pred --------CCcceEEecccc--eeee--EEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 194 --------DQSVATYKGHSV--LRTL--IRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 194 --------~~~~~~~~~~~~--~~~~--~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
+..+..++-... .... ........|+|+++ ++++++.|+.|++||+.+++.+..+. +...+.+++|
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 122333332111 1100 11122345788885 55777899999999999998887775 6778999999
Q ss_pred CCCCCeEEEEeC---------------CCCEEEeecCC
Q 022074 261 HPSQPMLVSSSW---------------DGDVVRWEFPG 283 (303)
Q Consensus 261 sp~~~~las~s~---------------Dg~i~~Wd~~~ 283 (303)
+|++++|++++. ||.+++||...
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 999998888877 57999999864
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=168.04 Aligned_cols=157 Identities=16% Similarity=0.145 Sum_probs=108.0
Q ss_pred CcccceEEEEEcC---CCCEEEEeeCCCeEEEEECCCCceEEEEeccc---CCeEEEEEccCCCcEE------------E
Q 022074 37 GYSFGIFSLKFST---DGRELVAGSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLI------------Y 98 (303)
Q Consensus 37 ~~~~~v~~l~~s~---~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~ 98 (303)
+|...+..++|++ +++.|++|+.|++|+|||+++++...++.+|. ..+.+++|+| ++.++ +
T Consensus 176 ~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 176 LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESES 254 (356)
T ss_dssp ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC---------
T ss_pred cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceee
Confidence 5555555555555 45678899999999999999999888887654 3677778976 46654 6
Q ss_pred EecCCCeEEEEcCccccCCCccceee-----cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVL-----MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+|+.|++|++||.. +++....+ .+|...+...++ ++.++++++.|++|+|||++..+
T Consensus 255 SGs~D~tIklWd~~----tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk------------ 316 (356)
T 2w18_A 255 LRSPVFQLIVINPK----TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQ------------ 316 (356)
T ss_dssp ---CCEEEEEEETT----TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCS------------
T ss_pred ccCCCcEEEEEECC----CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCc------------
Confidence 78899999999975 22222222 467666544444 37789999999999999986532
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+.++.+|..... ....|||++++|++|+.|++|+|||+
T Consensus 317 ----------------------~l~tL~gH~~~vv-----s~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 ----------------------CTALLPPVSDQHW-----SFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ----------------------EEEEECCC--CCC-----CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ----------------------EEEEecCCCCCeE-----EEEEECCCCCEEEEEECCCcEEEecC
Confidence 2233444421110 12358899999999999999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-20 Score=167.12 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=158.0
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEecccCCeEEEEEccCC
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 93 (303)
..+.+|+. +|.+. ....+|...+.+++|+|||++|++++.|+ .|++||+.+++.. .+..|...+.+++|+|+
T Consensus 159 ~~i~i~d~-~g~~~--~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spd- 233 (415)
T 2hqs_A 159 YELRVSDY-DGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPD- 233 (415)
T ss_dssp EEEEEEET-TSCSC--EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTT-
T ss_pred ceEEEEcC-CCCCC--EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCC-
Confidence 56667776 34332 23357888999999999999999999885 9999999998764 57778889999999865
Q ss_pred CcEEE-EecCCCe--EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CC--cEEEEEcccccCCcccc
Q 022074 94 GHLIY-SGSDDNL--CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQ--AIKLWDIRKMSSNASCN 167 (303)
Q Consensus 94 ~~~l~-s~s~dg~--v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~--~v~lWdl~~~~~~~~~~ 167 (303)
++.|+ +++.++. |++||++. + ....+..|...+..+.|+|+|++|+.++. ++ .|.+||+......
T Consensus 234 g~~la~~~~~~g~~~i~~~d~~~----~-~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~---- 304 (415)
T 2hqs_A 234 GSKLAFALSKTGSLNLYVMDLAS----G-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ---- 304 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTT----C-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----
T ss_pred CCEEEEEEecCCCceEEEEECCC----C-CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE----
Confidence 66555 7776654 89999752 2 23456678888999999999999988775 55 4555566432100
Q ss_pred cCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC---CeEEEEECCCCeE
Q 022074 168 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD---SCVYVYDLVSGEQ 244 (303)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~ 244 (303)
.+..+.. ....+.|+|++++|++++.+ ..|++||+.+++.
T Consensus 305 -------------------------------~l~~~~~------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 305 -------------------------------RITWEGS------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp -------------------------------ECCCSSS------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred -------------------------------EEecCCC------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 0000000 01235688999999988764 6899999998876
Q ss_pred EEEeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCCC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGN 284 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~~ 284 (303)
..+..|. .+.+++|+|++++|++++.|+ .|++||+.+.
T Consensus 348 -~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 348 -QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp -EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred -EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 4455554 899999999999999988887 7999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=166.97 Aligned_cols=211 Identities=14% Similarity=0.167 Sum_probs=136.6
Q ss_pred ECCCCceEEEEecccCCeEEEEEccCC--CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE
Q 022074 67 DLEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 144 (303)
Q Consensus 67 d~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 144 (303)
+....+....+.+|.+.|++++|+|+. +++|++|+.||.|++||++.. .......+.+|...|.++.|++++++|+
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--SCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--CceeEEEeccccCCEEEEEECcCCCEEE
Confidence 344445555677899999999998764 689999999999999997521 1122356778999999999999999999
Q ss_pred EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeC--CCCCccccCC------------CCCcceEEeccccee---
Q 022074 145 SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY--PPQARDLKHP------------CDQSVATYKGHSVLR--- 207 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~~~~~~--- 207 (303)
+++.|+.|++||++........... ..+..+.+ .+....+... ....+..+..+....
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIAQHD-----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECS-----SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred EEcCCCcEEEEEcCCCCceeecccc-----CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 9999999999998764322111110 00111111 1111111100 011111111110000
Q ss_pred ---------------ee---------EEE--------eeeeeeeC----CCeEEEEEeCCCeEEEEECCCC---eEEEEe
Q 022074 208 ---------------TL---------IRC--------HFSPVYST----GQKYIYTGSHDSCVYVYDLVSG---EQVAAL 248 (303)
Q Consensus 208 ---------------~~---------~~~--------~~~~~~s~----~~~~latg~~dg~i~iwd~~~~---~~~~~~ 248 (303)
.+ ... .....+.+ ....+++++.||.|++||+... +.+..+
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 00 000 00000111 1233999999999999999887 456677
Q ss_pred ecCCC------------CeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTS------------PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~------------~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
..|.. +|++++|+|++++|++++.||.|++||+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~ 305 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR 305 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence 77775 7999999999999999999999999998743
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=160.12 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=138.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCe
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 131 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v 131 (303)
..+++++.|++|++||+.+++....+..| ..+.+++|+++...++++++.|++|++||+. .++....+..+ ..+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~----~~~~~~~~~~~-~~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA----TNNVIATVPAG-SSP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT----TTEEEEEEECS-SSE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC----CCeEEEEEECC-CCc
Confidence 35788899999999999999877766655 4589999976533345788899999999975 23334444433 389
Q ss_pred EEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 132 TFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 132 ~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
.++++++++++++ +++.|+.|++||+..... +..+..+..
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----------------------------------~~~~~~~~~----- 117 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------------------------AGTVKTGKS----- 117 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------------------------EEEEECSSS-----
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeE----------------------------------EEEEeCCCC-----
Confidence 9999999999875 555679999999864221 011111110
Q ss_pred EEeeeeeeeCCCeEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCCC
Q 022074 211 RCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 211 ~~~~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~~ 284 (303)
.....++++++++ ++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++.| ++++.|+.+++||+...
T Consensus 118 --~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 118 --PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp --EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 0123477888876 788889999999999999888887664 57999999999876 68888999999998654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=164.21 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=144.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCC-----------ceE----EEEecccCCeEEEEEccCCCcEEE----Ee
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-----------KLS----LRILAHTSDVNTVCFGDESGHLIY----SG 100 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~-----------~~~----~~~~~h~~~v~~l~~~~~~~~~l~----s~ 100 (303)
..+..+++++++..+++++.|+ +++|+...- ... .....+...|.+++|++ ++++|+ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 3578899999999999999998 899865311 110 01234566799999976 477888 89
Q ss_pred cCCCeEEEEcCcccc----CCCc---cceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 101 SDDNLCKVWDRRCLN----VKGK---PAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 101 s~dg~v~lWd~~~~~----~~~~---~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
+.|++|++||++... ...+ ....+.+|...|.+++|+|+ +++|++++.|++|++||++....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~---------- 184 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK---------- 184 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE----------
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc----------
Confidence 999999999975321 0001 13456679999999999997 78999999999999999974210
Q ss_pred eeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 022074 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT 252 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~ 252 (303)
+....+|.... .+..|+|++++|++|+.||.|++||.+ ++....+..|.
T Consensus 185 ------------------------~~~~~~~~~~v------~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~ 233 (434)
T 2oit_A 185 ------------------------VCATLPSTVAV------TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP 233 (434)
T ss_dssp ------------------------EEEEECGGGCE------EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT
T ss_pred ------------------------eeeccCCCCce------eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc
Confidence 00111111111 123478899999999999999999998 55555554442
Q ss_pred -------CCeEEEEECCCCCeEEE-EeCCCC------EEEeecCCC
Q 022074 253 -------SPVRDCSWHPSQPMLVS-SSWDGD------VVRWEFPGN 284 (303)
Q Consensus 253 -------~~I~~v~~sp~~~~las-~s~Dg~------i~~Wd~~~~ 284 (303)
..|.+++|++++.++++ ++.||. +++|++...
T Consensus 234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 38999999999887754 334433 889998753
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.5e-19 Score=153.89 Aligned_cols=263 Identities=13% Similarity=0.106 Sum_probs=159.4
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCC-CeEEEEECC--CCceE--EEEecccCCeEEEE
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLE--ANKLS--LRILAHTSDVNTVC 88 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D-g~v~lwd~~--~~~~~--~~~~~h~~~v~~l~ 88 (303)
+.+..+.||+.-...+........|...+.+++|+|+|++|++++.+ +.|++|++. ++... ..+..+ ..+..++
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 90 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHIS 90 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEE
Confidence 45677888877332222222224566778999999999999998886 899999997 55532 223333 3788999
Q ss_pred EccCCCcEEE-EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEccc-ccCCcc
Q 022074 89 FGDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRK-MSSNAS 165 (303)
Q Consensus 89 ~~~~~~~~l~-s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~-~~~~~~ 165 (303)
|+++ ++.++ ++..++.|++||+. ..........+.. ...+..+.++++++++++++ .++.|++||+.. ......
T Consensus 91 ~s~d-g~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 91 TDHQ-GQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp ECTT-SSEEEEEETTTTEEEEEEEE-TTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EcCC-CCEEEEEecCCCeEEEEECC-CCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 9764 56554 44568999999973 1111122233332 33577888999999888777 899999999875 211100
Q ss_pred c--ccCccceeeeceeeeCCCCCccccCC--CCCcceEEeccc---ce--eeeEE----------EeeeeeeeCCCeEEE
Q 022074 166 C--NLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHS---VL--RTLIR----------CHFSPVYSTGQKYIY 226 (303)
Q Consensus 166 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~--~~~~~----------~~~~~~~s~~~~~la 226 (303)
. .... ........+.+.++.+.+... ....+..++-.. .. ..... ......|+|++++|+
T Consensus 168 ~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 168 DPAEVTT-VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEEEEC-STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ccccccc-CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 0 0000 000011223444554433211 122233222110 00 00000 011245788998776
Q ss_pred -EEeCCCeEEEEECC--C--CeEEEEeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecC
Q 022074 227 -TGSHDSCVYVYDLV--S--GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFP 282 (303)
Q Consensus 227 -tg~~dg~i~iwd~~--~--~~~~~~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~ 282 (303)
++..++.|++||+. + .+.+..+..+.. +.+++|+|++++|++++ .++.+.+|++.
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 45589999999998 3 344555555544 89999999999888777 68999999664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=150.71 Aligned_cols=227 Identities=16% Similarity=0.108 Sum_probs=157.0
Q ss_pred ccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-CceEEEEecc-cCCeEEE
Q 022074 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAH-TSDVNTV 87 (303)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-~~~~~~~~~h-~~~v~~l 87 (303)
.+.++.+..+.+|+.-+|... ...+|...|.+++|+|+|+++++++ ++.|++||+.+ ++.......+ ...+.++
T Consensus 15 ~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 15 GPGGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp ---CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred cCCCCcceeEEEEeCCCCcee---eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce
Confidence 345667778888887554422 2345788899999999999999986 78999999998 7765444455 3678899
Q ss_pred EEccCCCcEEEEec--CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCc
Q 022074 88 CFGDESGHLIYSGS--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 88 ~~~~~~~~~l~s~s--~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~ 164 (303)
+|+| +++.|++++ .++..++|..+.. ......+..+ ..+..+.++|++++|+ +++.|+.+++|+++......
T Consensus 91 ~~sp-dg~~l~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 91 GISP-DGALYAISDKVEFGKSAIYLLPST---GGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp EECT-TSSEEEEEECTTTSSCEEEEEETT---CCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred EECC-CCCEEEEEEeCCCCcceEEEEECC---CCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 9976 577888887 4456666654311 1122333333 3488889999999887 78899999999875321100
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECC-CC
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV-SG 242 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~-~~ 242 (303)
..+..+.. ....+.++|++++|+.++ .++.+++|++. .+
T Consensus 166 ---------------------------------~~~~~~~~------~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 166 ---------------------------------TRLTHGEG------RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp ---------------------------------EECCCSSS------CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred ---------------------------------eEcccCCC------ccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 00000000 001345788898877766 58999999886 45
Q ss_pred eEEEEeecCCCCeEEEEECCCCCeEEEEeCC-----------CCEEEeecCCC
Q 022074 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-----------GDVVRWEFPGN 284 (303)
Q Consensus 243 ~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-----------g~i~~Wd~~~~ 284 (303)
..+..+..|...+..++|+|++++|+.++.+ +.|.+||+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 207 SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence 5567777888899999999999999888876 56999998654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=160.06 Aligned_cols=223 Identities=9% Similarity=0.051 Sum_probs=160.7
Q ss_pred chhhcccccccc--ccCcCcccccCCCcccceEEEEEcC--------------CCCEEEEeeCC------CeEEEEECCC
Q 022074 13 GTMESLANVTEI--HDGLDFSAADDGGYSFGIFSLKFST--------------DGRELVAGSSD------DCIYVYDLEA 70 (303)
Q Consensus 13 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~s~--------------~g~~l~sgs~D------g~v~lwd~~~ 70 (303)
|.++-.+.+|+. -+|.........||...+..+++++ .+..++.++.+ ++|++||+++
T Consensus 89 G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g 168 (415)
T 2hqs_A 89 GSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG 168 (415)
T ss_dssp SCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS
T ss_pred CeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC
Confidence 445557788888 7776443445577887777777664 25666666654 7999999986
Q ss_pred CceEEEEecccCCeEEEEEccCCCcEEEEecCCC---eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE-EE
Q 022074 71 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SN 146 (303)
Q Consensus 71 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg---~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~ 146 (303)
+. ...+..|...+.+++|+| +++.|++++.++ .|++||++. ++ ...+..|...+.+++|+|+|++|+ ++
T Consensus 169 ~~-~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~t----g~-~~~l~~~~~~~~~~~~spdg~~la~~~ 241 (415)
T 2hqs_A 169 YN-QFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLAN----GA-VRQVASFPRHNGAPAFSPDGSKLAFAL 241 (415)
T ss_dssp CS-CEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTT----CC-EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CC-CEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCC----Cc-EEEeecCCCcccCEEEcCCCCEEEEEE
Confidence 54 456778999999999976 578888888775 999999863 22 234567888899999999999887 67
Q ss_pred eCCCc--EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeE
Q 022074 147 GKDQA--IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224 (303)
Q Consensus 147 ~~D~~--v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 224 (303)
+.|+. |++||++.... ..+..+.. ....+.|+|++++
T Consensus 242 ~~~g~~~i~~~d~~~~~~-----------------------------------~~l~~~~~------~~~~~~~spdg~~ 280 (415)
T 2hqs_A 242 SKTGSLNLYVMDLASGQI-----------------------------------RQVTDGRS------NNTEPTWFPDSQN 280 (415)
T ss_dssp CTTSSCEEEEEETTTCCE-----------------------------------EECCCCSS------CEEEEEECTTSSE
T ss_pred ecCCCceEEEEECCCCCE-----------------------------------EeCcCCCC------cccceEECCCCCE
Confidence 66665 88888764211 00011110 0123568899999
Q ss_pred EEEEeC-CC--eEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC---CCEEEeecCCC
Q 022074 225 IYTGSH-DS--CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD---GDVVRWEFPGN 284 (303)
Q Consensus 225 latg~~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D---g~i~~Wd~~~~ 284 (303)
|+.++. ++ .|++||+.+++. ..+..|...+.+++|||++++|++++.+ ..|.+||+.+.
T Consensus 281 l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 281 LAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred EEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 988876 44 788889988764 4455677789999999999999988865 58999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-17 Score=154.48 Aligned_cols=261 Identities=14% Similarity=0.092 Sum_probs=172.6
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEEC--CCCceEEEEecccCCeEEEEEc
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~--~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
++.+..+.||+.-+|.-. .....||. +.+++|+|||++|++++.|++|++||+ .+++...++. +...+..++|+
T Consensus 155 ~~~d~~V~v~D~~t~~~~-~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~s 230 (543)
T 1nir_A 155 LRDAGQIALVDGDSKKIV-KVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESS 230 (543)
T ss_dssp EGGGTEEEEEETTTCCEE-EEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEEC
T ss_pred EcCCCeEEEEECCCceEE-EEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeC
Confidence 556677888877665432 22334665 889999999999999999999999999 7877666655 45678999997
Q ss_pred cC---CCcEEEEec-CCCeEEEEcCccccCCCccceeecc----------ccc-CeEEEEeCCCCCE-EEEEeCCCcEEE
Q 022074 91 DE---SGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG----------HLE-GITFIDSRGDGRY-LISNGKDQAIKL 154 (303)
Q Consensus 91 ~~---~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~-l~s~~~D~~v~l 154 (303)
|- +++++++++ .+++|.+||... .++...+.. |.+ .+..+.+++++.. +++...+++|.+
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t----~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGET----LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTT----CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccc----cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 50 477877777 589999999753 333333332 333 6888889987655 567778999999
Q ss_pred EEcccccCCcccccCccceeeeceeeeCCCCCccccCC--CCCcceEEecccc-eeeeEEE----ee--eee-eeCC-Ce
Q 022074 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHSV-LRTLIRC----HF--SPV-YSTG-QK 223 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~----~~--~~~-~s~~-~~ 223 (303)
||+............. .-....+.+.|+.+.+... .+..+..++-... ....+.. |. ... ++|+ +.
T Consensus 307 vd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~ 383 (543)
T 1nir_A 307 VNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGP 383 (543)
T ss_dssp EECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEE
T ss_pred EEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCcc
Confidence 9987543211000000 0001122334444433211 1223333332211 1111111 10 111 3465 67
Q ss_pred EEEEEe-CCCeEEEEECCC-------CeEEEEeecCCCCeEEEEECCCCCeEEEEe-------CCCCEEEeecCCC
Q 022074 224 YIYTGS-HDSCVYVYDLVS-------GEQVAALKYHTSPVRDCSWHPSQPMLVSSS-------WDGDVVRWEFPGN 284 (303)
Q Consensus 224 ~latg~-~dg~i~iwd~~~-------~~~~~~~~~h~~~I~~v~~sp~~~~las~s-------~Dg~i~~Wd~~~~ 284 (303)
+++++. .|++|.+||..+ ++.+.+++.|...+..++|||++++|.+++ .+++|.+||+...
T Consensus 384 ~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 384 VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 777775 689999999988 888999999998999999999999999987 3789999998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-17 Score=159.65 Aligned_cols=237 Identities=9% Similarity=0.008 Sum_probs=154.4
Q ss_pred cceEEEEEcCCCCEEEEeeC-CC-----eEEEEECCCCceEEEEecccC------------------------CeEEEEE
Q 022074 40 FGIFSLKFSTDGRELVAGSS-DD-----CIYVYDLEANKLSLRILAHTS------------------------DVNTVCF 89 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~-Dg-----~v~lwd~~~~~~~~~~~~h~~------------------------~v~~l~~ 89 (303)
..+.+++|||||++|++++. |+ +|++||+.+++....+..+.. .+..++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 35899999999999999998 88 899999999876655544432 2788999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+| +++.|++++. +.|++||+..... .....+..|...+..+.|+|||++|+.++ ++.|++||+............
T Consensus 117 Sp-Dg~~l~~~~~-~~i~~~d~~~~~~--~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~ 191 (741)
T 2ecf_A 117 SP-DAQRLLFPLG-GELYLYDLKQEGK--AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADG 191 (741)
T ss_dssp CT-TSSEEEEEET-TEEEEEESSSCST--TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCC
T ss_pred CC-CCCEEEEEeC-CcEEEEECCCCCc--ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCC
Confidence 76 5778887775 8999999763200 02334566778899999999999999887 469999998653211110000
Q ss_pred cccee-----e-------eceeeeCCCCCccccCCCC-C---------------------------------cceEEecc
Q 022074 170 FRSYE-----W-------DYRWMDYPPQARDLKHPCD-Q---------------------------------SVATYKGH 203 (303)
Q Consensus 170 ~~~~~-----~-------~~~~~~~~~~~~~~~~~~~-~---------------------------------~~~~~~~~ 203 (303)
...+. | ......++|+.+.+..... . .+..++-.
T Consensus 192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~ 271 (741)
T 2ecf_A 192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA 271 (741)
T ss_dssp CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence 00000 0 0112334444443322110 0 11111111
Q ss_pred c-c-eeee------EEEeeeeeeeCCCeEEEEEeC-----CCeEEEEECCCCeEEEEeecCCC----CeEEEEECCCCCe
Q 022074 204 S-V-LRTL------IRCHFSPVYSTGQKYIYTGSH-----DSCVYVYDLVSGEQVAALKYHTS----PVRDCSWHPSQPM 266 (303)
Q Consensus 204 ~-~-~~~~------~~~~~~~~~s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~h~~----~I~~v~~sp~~~~ 266 (303)
. . ...+ ......+.| ||+++|+.++. +..|++||..+++....+..|.. .+.+++||||+++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~ 350 (741)
T 2ecf_A 272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSI 350 (741)
T ss_dssp TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCE
T ss_pred CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeE
Confidence 1 0 0000 012234567 88998887654 67899999999987666665543 4578999999999
Q ss_pred EEEEeCCCCEEEeecC
Q 022074 267 LVSSSWDGDVVRWEFP 282 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~ 282 (303)
+++++.||..++|.+.
T Consensus 351 ~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 351 LWSSERTGFQHLYRID 366 (741)
T ss_dssp EEEECTTSSCEEEEEC
T ss_pred EEEecCCCccEEEEEc
Confidence 9999999999998875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-17 Score=140.15 Aligned_cols=255 Identities=9% Similarity=0.001 Sum_probs=158.7
Q ss_pred chhhccccccccccCcCcccccCCCccc-ceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEec-c----cCCeE
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSF-GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILA-H----TSDVN 85 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~-h----~~~v~ 85 (303)
++.+..+.+|+.-+|... .....++.. .+..++|+|+|++++ +++.++.|.+||+.+++....+.. + ...+.
T Consensus 7 ~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 7 PARPDKLVVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp EETTTEEEEEETTTTEEE-EEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred cCCCCeEEEEECCCCcEE-EEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 344566777776555432 222233433 377899999998765 455688999999999887655442 2 22567
Q ss_pred EEEEccCCCcEEEEec------------CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 86 TVCFGDESGHLIYSGS------------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.++|++ +++.+++++ .++.|.+||+.. .+....+.. ...+..+.+++++++++++ ++.|.
T Consensus 86 ~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~----~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 86 GAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAET----LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT----TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred ceEECC-CCCEEEEEecccccccccccccCceEEEEECCC----CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 889975 466777775 579999999752 222333322 3456778899999988887 68999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC-------------------------cceEEecccceee
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ-------------------------SVATYKGHSVLRT 208 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 208 (303)
+||+............... ....+.++...+...... .+..++.......
T Consensus 158 ~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWE-----AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EEETTTTEEEEEECSTTTT-----TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EEECCCCcEeeeeeccccC-----CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 9998754322111111000 001122222222111100 0111211110000
Q ss_pred eEE------EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 209 LIR------CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 209 ~~~------~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
... ......++|++++++++ ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|.+||+.
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 000 11124688999998888 799999999999888777644 467899999999999889999999999986
Q ss_pred CC
Q 022074 283 GN 284 (303)
Q Consensus 283 ~~ 284 (303)
..
T Consensus 310 ~~ 311 (337)
T 1pby_B 310 TL 311 (337)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-17 Score=150.38 Aligned_cols=118 Identities=12% Similarity=0.059 Sum_probs=99.2
Q ss_pred CcccceEEEEEcCCCCEEE----EeeCCCeEEEEECCCC--------ce---EEEEecccCCeEEEEEccCCCcEEEEec
Q 022074 37 GYSFGIFSLKFSTDGRELV----AGSSDDCIYVYDLEAN--------KL---SLRILAHTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~----sgs~Dg~v~lwd~~~~--------~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~s 101 (303)
.|..+|.+++|+|+|++|+ +|+.|++|+|||+.++ +. ...+.+|...|.+++|+|..+++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3556799999999999999 7899999999998654 11 2334568999999999876688999999
Q ss_pred CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
.||+|++||++.. .......+|...|.+++|+++|++|++|+.|++|++||++
T Consensus 170 ~Dg~v~iwD~~~~----~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 170 ADGSIAVLQVTET----VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TTSCEEEEEESSS----EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCeEEEEEcCCC----cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 9999999998632 2233455788999999999999999999999999999987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=140.97 Aligned_cols=234 Identities=10% Similarity=0.059 Sum_probs=145.4
Q ss_pred hccccccccccCcCccccc-CCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCC-CceE--EEEec---------cc
Q 022074 16 ESLANVTEIHDGLDFSAAD-DGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEA-NKLS--LRILA---------HT 81 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~-~~~~--~~~~~---------h~ 81 (303)
+.-+.+|++-+|. ..... ..+|...+..++|+|+|++|++++ .+++|++|++.. +... ..+.. +.
T Consensus 62 ~~~v~~~~~~~g~-~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~ 140 (347)
T 3hfq_A 62 EGGIAAWQIDGQT-AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDG 140 (347)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSS
T ss_pred CceEEEEEecCCc-EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccC
Confidence 3456677763332 21111 134566788999999999998888 689999999963 3322 22211 11
Q ss_pred CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccc-ccCeEEEEeCCCCCEEEE-EeCCCcEEEEEccc
Q 022074 82 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLIS-NGKDQAIKLWDIRK 159 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s-~~~D~~v~lWdl~~ 159 (303)
..+.+++|+|+ ++++++...++.|++||+.... .......+..+ ......++|+|+|++++. +..++.+++|++..
T Consensus 141 ~~~~~~~~spd-g~l~v~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 141 SHIHYTDLTPD-NRLAVIDLGSDKVYVYNVSDAG-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp CCEEEEEECTT-SCEEEEETTTTEEEEEEECTTS-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceEEEECCC-CcEEEEeCCCCEEEEEEECCCC-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 24778999765 5577777788999999975110 00111112222 235778899999996554 66789999999863
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEE-EEEeCCCeEEEEE
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYD 238 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-atg~~dg~i~iwd 238 (303)
....... .......+.. +.+. .......|+|++++| ++...++.|.+||
T Consensus 219 ~~g~~~~----------~~~~~~~~~~-------------~~~~-------~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 219 QTGAFTQ----------LGIVKTIPAD-------------YTAH-------NGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp TTTEEEE----------EEEEESSCTT-------------CCSC-------CEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred CCCceEE----------eeeeeecCCC-------------CCCC-------CcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 1110000 0000000000 0000 001234578999977 5556799999999
Q ss_pred CC---CCeEEEEeecCCCCeEEEEECCCCCeEEEEeCC-CCEEEeecC
Q 022074 239 LV---SGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFP 282 (303)
Q Consensus 239 ~~---~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~D-g~i~~Wd~~ 282 (303)
+. +.+.+..+..+...+..++|+||+++|++++.+ +.+.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 87 224566666677778999999999988887765 899999764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=138.87 Aligned_cols=212 Identities=16% Similarity=0.149 Sum_probs=143.2
Q ss_pred hcccccccccc-CcCcccccCCCc-ccceEEEEEcCCCCEEEEeeC--CC--eEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 16 ESLANVTEIHD-GLDFSAADDGGY-SFGIFSLKFSTDGRELVAGSS--DD--CIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~~l~~s~~g~~l~sgs~--Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
+..+.+|+.-+ |. ..... .+| ...+.+++|+|+|+++++++. ++ .|.++++.++.. ..+.. ...+..++|
T Consensus 61 ~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~~~~~~ 136 (297)
T 2ojh_A 61 EGLLYRLSLAGDPS-PEKVD-TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTK-NLPSYWHGW 136 (297)
T ss_dssp TTEEEEEESSSCCS-CEECC-CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCS-SSSEEEEEE
T ss_pred CCeEEEEeCCCCCC-ceEec-cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeec-CCCccceEE
Confidence 34556676644 33 22222 344 477899999999999999983 34 445555555543 33333 345888999
Q ss_pred ccCCCcEEE-EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccc
Q 022074 90 GDESGHLIY-SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 90 ~~~~~~~l~-s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~ 167 (303)
+|+ ++.++ +++.++.+++|+++. .......+..|...+..+.++|++++|+.++ .|+.+++|+++....
T Consensus 137 spd-g~~l~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~----- 207 (297)
T 2ojh_A 137 SPD-GKSFTYCGIRDQVFDIYSMDI---DSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS----- 207 (297)
T ss_dssp CTT-SSEEEEEEEETTEEEEEEEET---TTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----
T ss_pred CCC-CCEEEEEECCCCceEEEEEEC---CCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC-----
Confidence 765 55554 888899999998642 1222345556778899999999999887666 599999998753110
Q ss_pred cCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC-----------CeEEE
Q 022074 168 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD-----------SCVYV 236 (303)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d-----------g~i~i 236 (303)
....+..+. .....+.|+|++++|++++.+ +.|++
T Consensus 208 ----------------------------~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 208 ----------------------------SVERITDSA------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp ----------------------------CEEECCCCS------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ----------------------------CcEEEecCC------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 000111111 011234578899999888766 57999
Q ss_pred EECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 237 YDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 237 wd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
||+.+++. +..+..|...+.+++|+|++++|++++.|.
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99988764 445557888999999999999988887664
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=149.59 Aligned_cols=258 Identities=12% Similarity=0.075 Sum_probs=163.8
Q ss_pred hccccccccc--cCcCcccccCCCcccceEEEEEcC----CCCEEEEee-CCCeEEEEECCCCceEEEEec---------
Q 022074 16 ESLANVTEIH--DGLDFSAADDGGYSFGIFSLKFST----DGRELVAGS-SDDCIYVYDLEANKLSLRILA--------- 79 (303)
Q Consensus 16 ~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~l~~s~----~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~--------- 79 (303)
+..+.||+.+ +|. ...... +......++|+| ||+++++++ .+++|.+||..+++....+..
T Consensus 199 d~~V~v~D~~~~t~~-~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 199 DARIDMIDLWAKEPT-KVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TSEEEEEETTSSSCE-EEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred CCeEEEEECcCCCCc-EEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 3667788874 332 222222 234579999999 999999988 489999999999887766653
Q ss_pred -c-cCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEE-eCCCcEEEEE
Q 022074 80 -H-TSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISN-GKDQAIKLWD 156 (303)
Q Consensus 80 -h-~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~D~~v~lWd 156 (303)
| ...+..+.++++.+.++++...+++|.+||...... .....+ .+...+..+.|+|++++|+++ ..+++|.+||
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~--l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN--LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS--CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc--ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 2 236888999877777888889999999999763211 111122 345567788899999987655 4689999999
Q ss_pred cccccCCcccccC---c--cceeeeceeeeCCCCCccccCC--CCCcceEEeccc--------ceeeeEEE----eeeee
Q 022074 157 IRKMSSNASCNLG---F--RSYEWDYRWMDYPPQARDLKHP--CDQSVATYKGHS--------VLRTLIRC----HFSPV 217 (303)
Q Consensus 157 l~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~----~~~~~ 217 (303)
+...+.......+ . +...+ ..+.....+... .+..+..++-.. .....+.. .....
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-----~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-----VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-----EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-----CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 9765433222211 0 11111 001001111110 111222221111 00001111 12234
Q ss_pred eeCCCeEEEEEe-------CCCeEEEEECCCCeEE-EEe--------ecCCCCeEEEEECCCCCeEEEEe-----CCCCE
Q 022074 218 YSTGQKYIYTGS-------HDSCVYVYDLVSGEQV-AAL--------KYHTSPVRDCSWHPSQPMLVSSS-----WDGDV 276 (303)
Q Consensus 218 ~s~~~~~latg~-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~I~~v~~sp~~~~las~s-----~Dg~i 276 (303)
++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..++|+|+|+.|..+. .|++|
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i 507 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL 507 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE
Confidence 789999999987 3789999999998866 443 35677899999999999877653 47999
Q ss_pred EEeecCCC
Q 022074 277 VRWEFPGN 284 (303)
Q Consensus 277 ~~Wd~~~~ 284 (303)
.+||.+..
T Consensus 508 ~v~D~~t~ 515 (543)
T 1nir_A 508 VVVDDKTL 515 (543)
T ss_dssp EEEETTTT
T ss_pred EEEECCCc
Confidence 99997653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-17 Score=154.38 Aligned_cols=195 Identities=11% Similarity=0.122 Sum_probs=133.8
Q ss_pred ccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEeccc-CCeEEEEEccCCCcEEEEecC---CCeEEEEcCcc
Q 022074 39 SFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSD---DNLCKVWDRRC 113 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~---dg~v~lWd~~~ 113 (303)
..+|++++|+|||++|+.++. ||+++||+++++.. .++..|. ..+..++|+|+ +++++++. +...++|....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 457999999999999999887 99999999966654 4555555 58899999854 67777765 55667765432
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCC--EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGR--YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.. .+... .+... ......+++++++ .+++++. +.+.+||+.....
T Consensus 98 ~~-~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g~~----------------------------- 144 (582)
T 3o4h_A 98 SR-PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGGGL----------------------------- 144 (582)
T ss_dssp TS-TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETTEE-----------------------------
T ss_pred cC-CCccc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCCcE-----------------------------
Confidence 00 11111 22111 1223445566653 4455544 4455999753210
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC----CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD----SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d----g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
..+..+.. ..+.+||||+++++++.+ +.|++||+.+++.. .+..|...+.+++|||||++|
T Consensus 145 ------~~l~~~~~--------~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l 209 (582)
T 3o4h_A 145 ------RELARLPG--------FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVT 209 (582)
T ss_dssp ------EEEEEESS--------CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEE
T ss_pred ------EEeecCCC--------ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEE
Confidence 00000000 345678899999988877 88999999888754 667888899999999999999
Q ss_pred EEEeCCC--CEEEeecCCC
Q 022074 268 VSSSWDG--DVVRWEFPGN 284 (303)
Q Consensus 268 as~s~Dg--~i~~Wd~~~~ 284 (303)
++++.++ .|++||+.+.
T Consensus 210 ~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 210 AGLETAREARLVTVDPRDG 228 (582)
T ss_dssp EEEECSSCEEEEEECTTTC
T ss_pred EEccCCCeeEEEEEcCCCC
Confidence 9888898 8999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-16 Score=136.14 Aligned_cols=225 Identities=8% Similarity=0.004 Sum_probs=148.3
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCce-EEEEecccCCeEEEEEcc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKL-SLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~-~~~~~~h~~~v~~l~~~~ 91 (303)
+.+..+.||+.-+|... .....+ ..+. +++|+|+|+++++++. ++.|++||+.+++. ...+..+.....+++|++
T Consensus 17 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~ 93 (331)
T 3u4y_A 17 QHLRRISFFSTDTLEIL-NQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP 93 (331)
T ss_dssp GGGTEEEEEETTTCCEE-EEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT
T ss_pred cCCCeEEEEeCccccee-eeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC
Confidence 44567778877665432 222233 3445 9999999997777665 88999999999887 555555655555599975
Q ss_pred CCCcEEEEecCCC---eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCc-EEEEEcccccCCccc
Q 022074 92 ESGHLIYSGSDDN---LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQA-IKLWDIRKMSSNASC 166 (303)
Q Consensus 92 ~~~~~l~s~s~dg---~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~-v~lWdl~~~~~~~~~ 166 (303)
++++++++..++ .|++||+.. .+....+. +......+.++|+|+++ ++...++. +.+|++........
T Consensus 94 -dg~~l~~~~~~~~~~~i~v~d~~~----~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~- 166 (331)
T 3u4y_A 94 -DDQFAVTVTGLNHPFNMQSYSFLK----NKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD- 166 (331)
T ss_dssp -TSSEEEECCCSSSSCEEEEEETTT----TEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE-
T ss_pred -CCCEEEEecCCCCcccEEEEECCC----CCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee-
Confidence 577777655553 999999752 23333332 23456889999999855 45556688 99999863211000
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE-EEeCCCeEEEEECCCCeE-
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVYDLVSGEQ- 244 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-tg~~dg~i~iwd~~~~~~- 244 (303)
.. . ........ .....++|++++++ ++..++.|++||+.+++.
T Consensus 167 --------~~-~-------------------~~~~~~~~-------~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 167 --------TG-Q-------------------EFISGGTR-------PFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp --------EE-E-------------------EEECSSSS-------EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred --------cC-C-------------------ccccCCCC-------ccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 00 0 00000000 01234788998554 455789999999998887
Q ss_pred --EEEeecCCCCeEEEEECCCCCeEE-EEeCCCCEEEeecCCC
Q 022074 245 --VAALKYHTSPVRDCSWHPSQPMLV-SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 245 --~~~~~~h~~~I~~v~~sp~~~~la-s~s~Dg~i~~Wd~~~~ 284 (303)
+..+..+ ..+..++|+||+++|+ +...++.+.+||....
T Consensus 212 ~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 212 TLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred ceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence 7777644 5678999999999655 4456788999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-15 Score=133.15 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=143.2
Q ss_pred cccceEEEEEcCCCCEEEEeeC-------CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSS-------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~-------Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
...++..++|+|+|+++++++. ++.|.+||..+++....+.. ...+..++|+++...++++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999888874 56899999999987665543 345778899765444666777789999999
Q ss_pred CccccCCCccceeeccccc---------CeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeecee
Q 022074 111 RRCLNVKGKPAGVLMGHLE---------GITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW 179 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~ 179 (303)
... ++....+..+.. ....+.+++++++++.++ .++.|.+||+........
T Consensus 118 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~-------------- 179 (353)
T 3vgz_A 118 AKT----GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTA-------------- 179 (353)
T ss_dssp TTT----CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEE--------------
T ss_pred CCC----CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEE--------------
Confidence 753 233333332221 267789999999877665 488999999864321100
Q ss_pred eeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec----CCCCe
Q 022074 180 MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY----HTSPV 255 (303)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~----h~~~I 255 (303)
+..... ......++++++++++++.++.|.+||..+++.+..+.. +...+
T Consensus 180 --------------------~~~~~~------~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 180 --------------------IQNTGK------MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp --------------------ECCCCT------TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred --------------------ecCCCC------ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 000000 001234678999999999999999999999998877654 55678
Q ss_pred EEEEECCCCCeEEEEeC-CCCEEEeecCCC
Q 022074 256 RDCSWHPSQPMLVSSSW-DGDVVRWEFPGN 284 (303)
Q Consensus 256 ~~v~~sp~~~~las~s~-Dg~i~~Wd~~~~ 284 (303)
..++|+|++++|+.++. ++.+.+||....
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 89999999997666554 599999998643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=158.34 Aligned_cols=214 Identities=10% Similarity=0.017 Sum_probs=142.6
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC---CeEEEEEccCCCcEEEEecCC---------CeEEE
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGSDD---------NLCKV 108 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~s~d---------g~v~l 108 (303)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|..++|+| +++.|++++.+ +.+++
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEE
Confidence 4678899999997766 7899999999999987666655654 489999976 57888888664 78889
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
||+..... .......+|...+..++|+|+|++|+.++. +.|++||+...........+..
T Consensus 96 ~d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~----------------- 155 (723)
T 1xfd_A 96 SKIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE----------------- 155 (723)
T ss_dssp EESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT-----------------
T ss_pred EECCCCce--EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC-----------------
Confidence 99863221 122223345555888899999999999886 7999999864321110000000
Q ss_pred ccCCCCCcceEEecccce---eeeEEEeeeeeeeCCCeEEEEEeCCC---------------------------------
Q 022074 189 LKHPCDQSVATYKGHSVL---RTLIRCHFSPVYSTGQKYIYTGSHDS--------------------------------- 232 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~latg~~dg--------------------------------- 232 (303)
.+ .+.|.... +........+.|||||++|++++.|+
T Consensus 156 -------~~-~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 227 (723)
T 1xfd_A 156 -------GV-IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (723)
T ss_dssp -------TT-EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred -------Cc-eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCe
Confidence 00 00000000 00000012345778888888776543
Q ss_pred -eEEEEECCCCeEEEEeecC------CCCeEEEEECCCCCeEEEEeC----CCCEEEeecCCC
Q 022074 233 -CVYVYDLVSGEQVAALKYH------TSPVRDCSWHPSQPMLVSSSW----DGDVVRWEFPGN 284 (303)
Q Consensus 233 -~i~iwd~~~~~~~~~~~~h------~~~I~~v~~sp~~~~las~s~----Dg~i~~Wd~~~~ 284 (303)
.|++||+.+++....+..+ ...+.+++|||||++|++.+. +..|++||+.+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 8999999988765556544 568999999999998877653 357999998654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-16 Score=136.92 Aligned_cols=228 Identities=8% Similarity=-0.019 Sum_probs=143.2
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
++++++++.+++++.+++|++||+.+++....+..+. ..+..++|+++...++++...++.|.+||+.. ++....
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t----~~~~~~ 80 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT----CKNTFH 80 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT----TEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC----CcEEEE
Confidence 4577888899999999999999999998766655443 25778899765333556777899999999752 222322
Q ss_pred ec-cc-----ccCeEEEEeCCCCCEEEEEeCC------------CcEEEEEcccccCCc---ccccCccceeeeceeeeC
Q 022074 124 LM-GH-----LEGITFIDSRGDGRYLISNGKD------------QAIKLWDIRKMSSNA---SCNLGFRSYEWDYRWMDY 182 (303)
Q Consensus 124 ~~-~h-----~~~v~~~~~~~~~~~l~s~~~D------------~~v~lWdl~~~~~~~---~~~~~~~~~~~~~~~~~~ 182 (303)
+. .+ ...+..+.++|+|+++++++.+ +.|.+||+....... ...... ....+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~ 155 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-----QVYLMRA 155 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-----SCCCEEE
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-----cccceeE
Confidence 22 22 2336788899999999988865 999999987522111 000000 0011112
Q ss_pred CCCCccccC---------CCCCcceEEeccc-------------------------c-----------------------
Q 022074 183 PPQARDLKH---------PCDQSVATYKGHS-------------------------V----------------------- 205 (303)
Q Consensus 183 ~~~~~~~~~---------~~~~~~~~~~~~~-------------------------~----------------------- 205 (303)
.++.+.+.. .....+..+.... .
T Consensus 156 s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 156 ADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp CTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred CCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 222110000 0000000000000 0
Q ss_pred --------eeeeEE------EeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 206 --------LRTLIR------CHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 206 --------~~~~~~------~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
...... ......++| ++++++++ ++.|++||+.+++.+..+... ..+.+++|+|++++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 312 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLG 312 (349)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEE
T ss_pred EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEe
Confidence 000000 112234678 99988888 889999999999988777643 457899999999988888
Q ss_pred eCCCCEEEeecCCC
Q 022074 271 SWDGDVVRWEFPGN 284 (303)
Q Consensus 271 s~Dg~i~~Wd~~~~ 284 (303)
+.++.|.+||....
T Consensus 313 ~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 313 GTFNDLAVFNPDTL 326 (349)
T ss_dssp SBSSEEEEEETTTT
T ss_pred cCCCeEEEEecccc
Confidence 89999999998643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=151.74 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=149.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
..|.+++|||||++|++++. ++|++||+.++. ....+..|...+..++|+| +++.|+.++ ++.|++||+...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g--- 182 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASG--- 182 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTT---
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCC---
Confidence 34889999999999999886 899999999882 2345667888899999976 578888777 469999997532
Q ss_pred Cccceeeccccc----------------CeEEEEeCCCCCEEEEEeCCC-------------------------------
Q 022074 118 GKPAGVLMGHLE----------------GITFIDSRGDGRYLISNGKDQ------------------------------- 150 (303)
Q Consensus 118 ~~~~~~~~~h~~----------------~v~~~~~~~~~~~l~s~~~D~------------------------------- 150 (303)
........+.. .+..+.|+|||++|++++.|+
T Consensus 183 -~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 183 -RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp -EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred -CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 22222222222 146788999999999988776
Q ss_pred --cEEEEEccc-ccCCcccccCccceeeeceeeeCCCCCccccCCC------CCcceEEecccc-eeeeEEE--------
Q 022074 151 --AIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC------DQSVATYKGHSV-LRTLIRC-------- 212 (303)
Q Consensus 151 --~v~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~-------- 212 (303)
.|.+||+.. ....... .. ......+....+ ++.+.+.... ...+..++-... ...+...
T Consensus 262 ~~~l~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWID-LG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEEEECSSTTCCCEEEC-CC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCCceEEec-CC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 788888765 3321110 00 001111222334 4444332111 111222221110 1111111
Q ss_pred eeeeeeeCCCeEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEE-EECCCCCeE-EEEeCCC--CEEEeecCC
Q 022074 213 HFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRDC-SWHPSQPML-VSSSWDG--DVVRWEFPG 283 (303)
Q Consensus 213 ~~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~v-~~sp~~~~l-as~s~Dg--~i~~Wd~~~ 283 (303)
...+.|+||++++++++.||.++||.+. +++ ...+..|...+.++ .|||+++.| ++++.|+ .+++|++..
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 1256789999999999999988887765 445 67777888889888 599999866 4555565 899999753
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=132.95 Aligned_cols=227 Identities=12% Similarity=0.081 Sum_probs=141.1
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
.+.+++.-+|.-.. .....+..+..+++|+|+|++++++..++ .|++||+.+++....+. +......++|+|+..
T Consensus 63 ~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~ 140 (331)
T 3u4y_A 63 TLVQIETQLEPPKV-VAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGN 140 (331)
T ss_dssp EEEEEECSSSSCEE-EEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSS
T ss_pred eEEEEECCCCceeE-EecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCC
Confidence 34555554443201 11133445555599999999999666553 89999999988765544 345678999976543
Q ss_pred cEEEEecCCCe-EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccc
Q 022074 95 HLIYSGSDDNL-CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 95 ~~l~s~s~dg~-v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
.++++...++. |.+|++......................+.++|+|+++ +++..++.|++||+.......
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-------- 212 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-------- 212 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE--------
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc--------
Confidence 45666666678 99999752110000001111234457889999999865 555578999999986432100
Q ss_pred eeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeE--EEEee
Q 022074 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQ--VAALK 249 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~--~~~~~ 249 (303)
.+..+..... .....|+|++++++.++ .++.|.+||..+++. +..+.
T Consensus 213 -----------------------~~~~~~~~~~-------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~ 262 (331)
T 3u4y_A 213 -----------------------LLNAVGTNNL-------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFG 262 (331)
T ss_dssp -----------------------EEEEEECSSC-------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred -----------------------eeeeccCCCC-------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccc
Confidence 0001110000 01234788999766554 688899999999876 44443
Q ss_pred cC----CCC---eEEEEECCCCCeEEEE-eCCCCEEEeecCCC
Q 022074 250 YH----TSP---VRDCSWHPSQPMLVSS-SWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ~h----~~~---I~~v~~sp~~~~las~-s~Dg~i~~Wd~~~~ 284 (303)
.+ ..+ ...++|+||+++|+.+ ..++.+.+||+...
T Consensus 263 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 263 HGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred cccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 22 222 3568999999987554 45679999998754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-16 Score=148.62 Aligned_cols=248 Identities=9% Similarity=0.001 Sum_probs=148.3
Q ss_pred hhccccccccccCcCcccccCCCccc---ceEEEEEcCCCCEEEEeeCC---------CeEEEEECCCCceEEEEe---c
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSF---GIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKLSLRIL---A 79 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~s~~g~~l~sgs~D---------g~v~lwd~~~~~~~~~~~---~ 79 (303)
.|..+.+|+.-+|.... ...+|.. .|.+++|||||++|++++.+ +.+++||+.+++. ..+. .
T Consensus 35 ~dg~i~~~d~~~g~~~~--~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~ 111 (723)
T 1xfd_A 35 QKGTVRLWNVETNTSTV--LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEV 111 (723)
T ss_dssp SSSCEEEBCGGGCCCEE--EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTC
T ss_pred CCCCEEEEECCCCcEEE--EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcc
Confidence 45567778876665332 2244554 59999999999999999874 7888999999875 2333 2
Q ss_pred ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccC------------------eEEEEeCCCCC
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG------------------ITFIDSRGDGR 141 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~------------------v~~~~~~~~~~ 141 (303)
|...+..++|+| +++.|+.++. +.|++||+... ........+... +..+.|+|||+
T Consensus 112 ~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g----~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 112 SNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGK----QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp CSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSS----CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred ccccccccEECC-CCCEEEEEEC-CeEEEEECCCC----ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence 344588899976 4777877775 79999997532 222233333322 37899999999
Q ss_pred EEEEEeCC-CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc-----c--c-CCCCCcceEEecccceeeeEEE
Q 022074 142 YLISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD-----L--K-HPCDQSVATYKGHSVLRTLIRC 212 (303)
Q Consensus 142 ~l~s~~~D-~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~-~~~~~~~~~~~~~~~~~~~~~~ 212 (303)
+|++++.| +.+++|++....... .. ......+++.... + . .........+..+.........
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~ 256 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSI-----YP----TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYY 256 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSS-----SC----CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEE
T ss_pred EEEEEEECCCccceEEeeccCCcC-----CC----cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccce
Confidence 99888754 578888764321110 00 0111222221110 0 0 0000000111110000000011
Q ss_pred eeeeeeeCCCeEEEEEeC----CCeEEEEECCCCeEEEEeec-CCCCeE----EEEECCCCCeEEE--EeCCC------C
Q 022074 213 HFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQVAALKY-HTSPVR----DCSWHPSQPMLVS--SSWDG------D 275 (303)
Q Consensus 213 ~~~~~~s~~~~~latg~~----dg~i~iwd~~~~~~~~~~~~-h~~~I~----~v~~sp~~~~las--~s~Dg------~ 275 (303)
...+.||||++++++... +..|++||+.+++....+.. |...+. .++|||||+.|+. +..|+ .
T Consensus 257 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 257 ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 234668999998877653 46899999999887655543 445544 8899999997764 45666 4
Q ss_pred EEEee
Q 022074 276 VVRWE 280 (303)
Q Consensus 276 i~~Wd 280 (303)
|.+||
T Consensus 337 l~~~d 341 (723)
T 1xfd_A 337 ITVSS 341 (723)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 66677
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-15 Score=130.79 Aligned_cols=201 Identities=13% Similarity=0.131 Sum_probs=138.3
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCC---------eEEEEEccCCCcEEEEec--CCCeEEE
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSD---------VNTVCFGDESGHLIYSGS--DDNLCKV 108 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~---------v~~l~~~~~~~~~l~s~s--~dg~v~l 108 (303)
.+.+++|+++|++++++ ..++.|.+||+.+++....+..+... +..++|+++ ++.++.++ .++.|.+
T Consensus 90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-TNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-TTEEEEEEESSSCEEEE
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC-CCEEEEEecCCCceEEE
Confidence 36789999999966554 55799999999999877666554322 678999765 55554443 5889999
Q ss_pred EcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
||.. ..+....+..+...+..+.++++++++++++.++.+.+||+......... .....
T Consensus 169 ~d~~----~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--------------~~~~~--- 227 (353)
T 3vgz_A 169 VDGG----NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--------------KLLDD--- 227 (353)
T ss_dssp EETT----TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--------------ECCCS---
T ss_pred EcCC----CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--------------EcCCC---
Confidence 9975 23334444434555777889999999999999999999998643211000 00000
Q ss_pred ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE
Q 022074 189 LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267 (303)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l 267 (303)
+... ......++|++++++.++ .++.|++||..+++.+..+.... ...++|+|+++++
T Consensus 228 -------------~~~~------~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l 286 (353)
T 3vgz_A 228 -------------GKEH------FFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEA 286 (353)
T ss_dssp -------------SSCC------CEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEE
T ss_pred -------------CCCc------ccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEE
Confidence 0000 001234678888766665 45999999999999887776544 2679999999954
Q ss_pred -EEEeCCCCEEEeecCCC
Q 022074 268 -VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 268 -as~s~Dg~i~~Wd~~~~ 284 (303)
++...++.+.+||....
T Consensus 287 ~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp EEEETTTTEEEEEETTTT
T ss_pred EEEECCCCeEEEEECCCC
Confidence 55557999999997643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-15 Score=148.86 Aligned_cols=226 Identities=11% Similarity=0.015 Sum_probs=153.8
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC----------Ce
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD----------NL 105 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----------g~ 105 (303)
.+|...+.+++|+|||++|++++.++.|++||+.+++.......|...+..++|+| ++++|++++.+ +.
T Consensus 375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~ 453 (1045)
T 1k32_A 375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQA 453 (1045)
T ss_dssp CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEE
T ss_pred cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCe
Confidence 37888999999999999999999999999999999987766668888899999976 57788777654 49
Q ss_pred EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 185 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (303)
|++||+.. ++ ...+..|...+..+.|+++|++|+.++.++..++|+......... ..... + .+.+.+.
T Consensus 454 i~l~d~~~----g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~--~~~~~--~---~~~~~~~ 521 (1045)
T 1k32_A 454 IHVYDMEG----RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE--VVSKP--F---VIPLIPG 521 (1045)
T ss_dssp EEEEETTT----TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECC--SCBEE--E---EEESSTT
T ss_pred EEEEECCC----Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccc--cCcee--E---EEEeCCC
Confidence 99999752 22 445667878888899999999999999999999998653211000 00000 0 0011111
Q ss_pred Cccc---------------cCCC-CCcceEEecccceeeeEEEeeeeeeeCCCeEEEE-------------EeCCCeEEE
Q 022074 186 ARDL---------------KHPC-DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-------------GSHDSCVYV 236 (303)
Q Consensus 186 ~~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat-------------g~~dg~i~i 236 (303)
.... .... ...+..+..+. .......++++++++++ ......|++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~------~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 522 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP------GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp CCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC------BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred CCCccccCcCccccccccccccCHhHceEEcCCCC------CChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 0000 0000 00111111111 01123346788887775 223568999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 237 YDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 237 wd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
||..+++.. .+. ..+.+++|||||+.|++++.| .+++||+....
T Consensus 596 ~d~~~~~~~-~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVT-EVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEE-EEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EECCCCcEE-Eee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 999888753 333 568999999999999999876 89999997543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-14 Score=127.01 Aligned_cols=270 Identities=13% Similarity=0.089 Sum_probs=156.5
Q ss_pred EEEEccCch--hhcccccccccc-CcCcccccCCCcccceEEEEEcCCCCEEEEeeCC----CeEEEEECCC--CceE--
Q 022074 6 HIVDVGSGT--MESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEA--NKLS-- 74 (303)
Q Consensus 6 ~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~D----g~v~lwd~~~--~~~~-- 74 (303)
+.+-||+-+ .+.-|.+|+.-. ..+....... +......++|+|||++|++++.+ +.|.+|++.. +...
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 556677432 234566766522 1222211112 55667789999999999999886 7999998865 4432
Q ss_pred EEEecccCCeEEEEEccCCCcEEEEe-cCCCeEEEEcCccccCCCccceee--c--------ccccCeEEEEeCCCCCEE
Q 022074 75 LRILAHTSDVNTVCFGDESGHLIYSG-SDDNLCKVWDRRCLNVKGKPAGVL--M--------GHLEGITFIDSRGDGRYL 143 (303)
Q Consensus 75 ~~~~~h~~~v~~l~~~~~~~~~l~s~-s~dg~v~lWd~~~~~~~~~~~~~~--~--------~h~~~v~~~~~~~~~~~l 143 (303)
.....+......+++ +++.++++ ..+++|.+|++............+ . .+...+.++.++|+|+++
T Consensus 93 ~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 93 NTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 222334456677777 35555555 468899999975321111111111 1 112335789999999966
Q ss_pred EEEe-CCCcEEEEEcccccC----C-c-------ccccCccceeeeceeeeCCCCCccccCCC--CCcceEEecccc-ee
Q 022074 144 ISNG-KDQAIKLWDIRKMSS----N-A-------SCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATYKGHSV-LR 207 (303)
Q Consensus 144 ~s~~-~D~~v~lWdl~~~~~----~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~ 207 (303)
+.++ .++.|++|++..... . . ..... .......+.+.++.+.+.... ...+..++-... ..
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~ 246 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA---PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD 246 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC---TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC---CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence 5544 589999999874321 0 0 00000 001122345556655432222 223333321110 00
Q ss_pred eeEEE---------eeeeeeeCCCeEEEEEeC--CCeEEEEECC--CCe--EEEEeecCCCCeEEEEECCCCCeEEEEe-
Q 022074 208 TLIRC---------HFSPVYSTGQKYIYTGSH--DSCVYVYDLV--SGE--QVAALKYHTSPVRDCSWHPSQPMLVSSS- 271 (303)
Q Consensus 208 ~~~~~---------~~~~~~s~~~~~latg~~--dg~i~iwd~~--~~~--~~~~~~~h~~~I~~v~~sp~~~~las~s- 271 (303)
..... .....|+|++++|++++. ++.|.+|++. +++ .+..+.. ...+.+++|+||+++|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEEC
Confidence 01000 124558999998877665 4899999985 444 3445544 55788999999999888887
Q ss_pred CCCCEEEeecCC
Q 022074 272 WDGDVVRWEFPG 283 (303)
Q Consensus 272 ~Dg~i~~Wd~~~ 283 (303)
.++.+.+|++..
T Consensus 326 ~~~~v~v~~~d~ 337 (361)
T 3scy_A 326 DTNVIQIFERDQ 337 (361)
T ss_dssp TTTEEEEEEECT
T ss_pred CCCCEEEEEEEC
Confidence 679999987653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=146.52 Aligned_cols=213 Identities=11% Similarity=0.066 Sum_probs=142.3
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCC--CceEEEEecccCCeEEEEEc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEA--NKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~--~~~~~~~~~h~~~v~~l~~~ 90 (303)
+..+.||.+ +|.+.. ....++...+.+++|+|| +.+++++. +...+||.++. ......+... ..+...+|+
T Consensus 43 ~g~~~lw~~-~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~s 118 (582)
T 3o4h_A 43 EGSVNAYLY-DGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMRILSGV 118 (582)
T ss_dssp TTEEEEEEE-ETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBEEEEEE
T ss_pred CCceeEEEE-cCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCceeeeeC
Confidence 556678885 565442 221333368999999999 77777764 45566665533 2222233332 334456776
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC----CcEEEEEcccccCCccc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASC 166 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D----~~v~lWdl~~~~~~~~~ 166 (303)
++....+++.+.++.+.+||+.. ++.. .+..+.. ..+.++|||++|++++.| ..|++||+.....
T Consensus 119 ~dg~~~~~~s~~~~~~~l~d~~~----g~~~-~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---- 187 (582)
T 3o4h_A 119 DTGEAVVFTGATEDRVALYALDG----GGLR-ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---- 187 (582)
T ss_dssp ECSSCEEEEEECSSCEEEEEEET----TEEE-EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC----
T ss_pred CCCCeEEEEecCCCCceEEEccC----CcEE-EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc----
Confidence 65444444444444555999752 2222 2323333 678899999999988877 7899999753221
Q ss_pred ccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC--eEEEEECCCCeE
Q 022074 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS--CVYVYDLVSGEQ 244 (303)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg--~i~iwd~~~~~~ 244 (303)
..+.++.. ....+.|||||++|+++..++ .|++||+.+++.
T Consensus 188 -------------------------------~~l~~~~~------~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 188 -------------------------------RVFDSGEG------SFSSASISPGMKVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp -------------------------------EEECCSSC------EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE
T ss_pred -------------------------------eEeecCCC------ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE
Confidence 01111111 113567999999999888888 999999999887
Q ss_pred EEEeecCCCCeEEEE--------ECCCCCeEEEEeCCCCEEEeec
Q 022074 245 VAALKYHTSPVRDCS--------WHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~--------~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
. .+..|...+..++ |||||.++++++.|+++++|++
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7 7778887788888 9999999999999999999998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-15 Score=131.01 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=145.2
Q ss_pred EEEEccCc--hhhcccccccccc-CcCcccccCCCcccceEEEEEcCCCCEEEEeeC---CCeEEEEECCCCce--EEEE
Q 022074 6 HIVDVGSG--TMESLANVTEIHD-GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKL--SLRI 77 (303)
Q Consensus 6 ~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~---Dg~v~lwd~~~~~~--~~~~ 77 (303)
|.|-||+- +-+.-+.||..-. ..+.......++......++|+|||+ +++++. ++.|++||+.++.. ...+
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 55666632 2233455555521 11221112233445677899999999 666554 68999999987763 2333
Q ss_pred ecccCCeEEEEEccCCCcEEEEec-CCCeEEEEcCccccCCCccceeecc---------cccCeEEEEeCCCCCEEEEEe
Q 022074 78 LAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMG---------HLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 78 ~~h~~~v~~l~~~~~~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~~ 147 (303)
..+...+..++|++ +++.|++++ .+++|++||+.... .......+.. +...+.+++++|+|+++++..
T Consensus 82 ~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADG-ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTS-CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred ecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCC-CeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 45677888999976 467666666 78999999974211 1111111111 122477899999999777777
Q ss_pred CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEE
Q 022074 148 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 227 (303)
Q Consensus 148 ~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat 227 (303)
.++.|++||+..... .. . . .....+ .+.. .....|+|+++++++
T Consensus 160 ~~~~v~~~~~~~~g~---~~----~-~---~~~~~~-----------------~g~~--------p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQ---LS----E-Q---SVLTME-----------------AGFG--------PRHLVFSPDGQYAFL 203 (347)
T ss_dssp TTTEEEEEEECTTSC---EE----E-E---EEEECC-----------------TTCC--------EEEEEECTTSSEEEE
T ss_pred CCCEEEEEEECCCCc---EE----E-e---eeEEcC-----------------CCCC--------CceEEECCCCCEEEE
Confidence 789999999862100 00 0 0 000000 0000 012357889986555
Q ss_pred -EeCCCeEEEEECCC--CeE--EEEeecCC------CCeEEEEECCCCCeE-EEEeCCCCEEEeecC
Q 022074 228 -GSHDSCVYVYDLVS--GEQ--VAALKYHT------SPVRDCSWHPSQPML-VSSSWDGDVVRWEFP 282 (303)
Q Consensus 228 -g~~dg~i~iwd~~~--~~~--~~~~~~h~------~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~ 282 (303)
+..++.|++|++.. ++. +..+.... ..+..++|+|||++| ++...++.+.+|++.
T Consensus 204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 56789999999874 543 23333222 348899999999976 666678999999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=151.67 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=150.8
Q ss_pred cccceEEEEEc-CCCCEEEEeeCCCeEEEEECCCCceEEEEecccC-CeEEEEEccCCCcEEEEecCCCeEE-EEcCccc
Q 022074 38 YSFGIFSLKFS-TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCK-VWDRRCL 114 (303)
Q Consensus 38 ~~~~v~~l~~s-~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~-lWd~~~~ 114 (303)
|...+.+++|+ |||+++++++ ++.+++|++.++... .+..|.. .+..++|+ +++.++.++.+..+. +||...
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~- 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT- 368 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTT-
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCC-
Confidence 44578999999 9999999887 788999999887644 4666766 78999996 577888888788888 888642
Q ss_pred cCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 115 NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 115 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
.. ...+.+|...+..++++|+|++|++++.++.|++||+......
T Consensus 369 ---~~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~------------------------------- 413 (1045)
T 1k32_A 369 ---GK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT------------------------------- 413 (1045)
T ss_dssp ---CC-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------------------------
T ss_pred ---CC-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE-------------------------------
Confidence 12 2234477788999999999999999999999999998642210
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC----------eEEEEECCCCeEEEEeecCCCCeEEEEECCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS----------CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg----------~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~ 264 (303)
....++... ...+.||||+++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||
T Consensus 414 ---~~~~~~~~~------v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 414 ---VIERSREAM------ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ---EEEECSSSC------CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTS
T ss_pred ---EeccCCCCC------ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCC
Confidence 001111100 12345889999999887754 99999999887 66777888889999999999
Q ss_pred CeEEEEeCCCCEEEeecC
Q 022074 265 PMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~ 282 (303)
++|+.++.++....|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 999999999888888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-15 Score=141.27 Aligned_cols=237 Identities=13% Similarity=0.102 Sum_probs=147.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc-cCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL-NVKG 118 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~-~~~~ 118 (303)
.+|.+++|+|| +.++.+ .|++|++||+.+++.. .+..+...+..++|+| +++.|+++ .|+.|++||+... +..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCC
Confidence 57999999999 666655 4699999999988653 4556777888999976 57788775 6799999998630 0002
Q ss_pred ccceeecccccC--------------eEEEEeCCCCCEEEEEe---------------------------------CCCc
Q 022074 119 KPAGVLMGHLEG--------------ITFIDSRGDGRYLISNG---------------------------------KDQA 151 (303)
Q Consensus 119 ~~~~~~~~h~~~--------------v~~~~~~~~~~~l~s~~---------------------------------~D~~ 151 (303)
........+... +..+.|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 222222222222 47888999999999987 4577
Q ss_pred EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-C-----CcceEEecccc--eeeeEEE--------eee
Q 022074 152 IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-D-----QSVATYKGHSV--LRTLIRC--------HFS 215 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~--~~~~~~~--------~~~ 215 (303)
|++||+........... ......+..+.+.|+.+.+.... + ..+..++.... ...+... ...
T Consensus 237 l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred EEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 99999865321110000 00011122344555555333211 1 12222222111 1111110 123
Q ss_pred eeeeC--CCeEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEE-EEECCCCCeEEEEeC-CC----CEEEeecCC
Q 022074 216 PVYST--GQKYIYTGSHDSCVYVYDLV-SGEQVAALKYHTSPVRD-CSWHPSQPMLVSSSW-DG----DVVRWEFPG 283 (303)
Q Consensus 216 ~~~s~--~~~~latg~~dg~i~iwd~~-~~~~~~~~~~h~~~I~~-v~~sp~~~~las~s~-Dg----~i~~Wd~~~ 283 (303)
+.|+| +++++++++.|+.+++|++. +++.+..+..|...+.+ ++|+|+++.|+.++. ++ .|..||..+
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 56899 99999999999999999876 66777788888888887 899999987655544 44 455555443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-15 Score=132.16 Aligned_cols=274 Identities=11% Similarity=0.098 Sum_probs=158.6
Q ss_pred EEEEEccCchhhcccccccc--ccCc-CcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC-CCceEEEEecc
Q 022074 5 VHIVDVGSGTMESLANVTEI--HDGL-DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAH 80 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~-~~~~~~~~~~h 80 (303)
+|-|-||+-+...-|.+.++ -+|. ........+....+..++|+|+|++|++++.+ .|.+||+. ++++.... .+
T Consensus 2 ~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~ 79 (365)
T 1jof_A 2 LHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SH 79 (365)
T ss_dssp EEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EE
T ss_pred cEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-Ee
Confidence 46677887554333444443 1221 11111111233357789999999999999888 89999997 77654322 22
Q ss_pred c--CCeEEEEEccCCCc--EEEEec-------------CCCeEEEEcCccccCCCccceeec----ccccCeEEEEeCCC
Q 022074 81 T--SDVNTVCFGDESGH--LIYSGS-------------DDNLCKVWDRRCLNVKGKPAGVLM----GHLEGITFIDSRGD 139 (303)
Q Consensus 81 ~--~~v~~l~~~~~~~~--~l~s~s-------------~dg~v~lWd~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~ 139 (303)
. +....++|+| +++ ++++++ .++++.+|++.. .++....+. .+...+..+.++|+
T Consensus 80 ~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 80 PIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE---TGKLEKNVQNYEYQENTGIHGMVFDPT 155 (365)
T ss_dssp ECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT---TCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred ecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCC---CCcCcceEeeEEeCCCCcceEEEECCC
Confidence 1 3355678865 466 345664 689999999752 122222222 24456889999999
Q ss_pred CCEEEEEe-CCCcEEEEEcc-cccCCcccccCccceeeeceeeeCCCCCccccCCC--CCcceEE--ec--ccce---ee
Q 022074 140 GRYLISNG-KDQAIKLWDIR-KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC--DQSVATY--KG--HSVL---RT 208 (303)
Q Consensus 140 ~~~l~s~~-~D~~v~lWdl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~--~~~~---~~ 208 (303)
|++++++. .++.|++||+. ...................+.+.+.++.+.+.... ...+..+ +. .... ..
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 235 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS 235 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence 99887765 46899999986 22211000000000011123345555554432211 1222222 11 0000 00
Q ss_pred e--E-------E-------Eeeeee-eeCCCeEEEEEeCC-C-----eEEEEECC-CCeEEE---EeecCCCCeEEEEEC
Q 022074 209 L--I-------R-------CHFSPV-YSTGQKYIYTGSHD-S-----CVYVYDLV-SGEQVA---ALKYHTSPVRDCSWH 261 (303)
Q Consensus 209 ~--~-------~-------~~~~~~-~s~~~~~latg~~d-g-----~i~iwd~~-~~~~~~---~~~~h~~~I~~v~~s 261 (303)
+ + . ...... ++|++++|++++.+ . +|.+|++. +++... ....+...+..++|+
T Consensus 236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~s 315 (365)
T 1jof_A 236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS 315 (365)
T ss_dssp EESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE
T ss_pred EEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceec
Confidence 0 0 0 123456 89999988776543 2 89999986 666433 233455567889999
Q ss_pred C---CCCeEEEEeCC-CCEEEeecCCC
Q 022074 262 P---SQPMLVSSSWD-GDVVRWEFPGN 284 (303)
Q Consensus 262 p---~~~~las~s~D-g~i~~Wd~~~~ 284 (303)
| |+++|++++.+ +++++|++...
T Consensus 316 p~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 316 PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9 89999998875 89999998653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=126.70 Aligned_cols=190 Identities=13% Similarity=0.185 Sum_probs=123.3
Q ss_pred EEEeeCCCeEEEEECCC-Cce-EEEEecccCCeEEEEEccCCCcEEEEecCC-CeEEEEcCccccCCCccceeecccccC
Q 022074 54 LVAGSSDDCIYVYDLEA-NKL-SLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKPAGVLMGHLEG 130 (303)
Q Consensus 54 l~sgs~Dg~v~lwd~~~-~~~-~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v~lWd~~~~~~~~~~~~~~~~h~~~ 130 (303)
+++++.|+.|++||+.. +.. ......|...+..++|+| +++.+++++.+ +.|++|++............+..+. .
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 44447899999999963 322 233456777889999976 46767777665 9999999752111111222333333 6
Q ss_pred eEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeee
Q 022074 131 ITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 209 (303)
Q Consensus 131 v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (303)
+..++++++++++++++. ++.|++||+.... ... .+........
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-~~~------------------------------~~~~~~~~~~---- 130 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-PVG------------------------------VVDVVEGLDG---- 130 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTE-EEE------------------------------EEEEECCCTT----
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-ccc------------------------------ccccccCCCC----
Confidence 788999999998876664 8899999984100 000 0000000000
Q ss_pred EEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCC-CeEEE----EeecC-CCCeEEEEECCCCCeEEE-EeCCCCEEEeec
Q 022074 210 IRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVS-GEQVA----ALKYH-TSPVRDCSWHPSQPMLVS-SSWDGDVVRWEF 281 (303)
Q Consensus 210 ~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~-~~~~~----~~~~h-~~~I~~v~~sp~~~~las-~s~Dg~i~~Wd~ 281 (303)
.....++|+++++++++ .++.|++||+.+ ++... .+..+ ...+..++|+|++++|+. +..++.+.+|++
T Consensus 131 ---~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~ 207 (343)
T 1ri6_A 131 ---CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 207 (343)
T ss_dssp ---BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred ---ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 11234778898888777 899999999987 65422 23333 347889999999996654 458899999998
Q ss_pred CC
Q 022074 282 PG 283 (303)
Q Consensus 282 ~~ 283 (303)
..
T Consensus 208 ~~ 209 (343)
T 1ri6_A 208 KD 209 (343)
T ss_dssp SC
T ss_pred cC
Confidence 53
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-15 Score=140.96 Aligned_cols=256 Identities=11% Similarity=0.052 Sum_probs=152.0
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC-----CceEEEEecccCC--------
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSD-------- 83 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~-----~~~~~~~~~h~~~-------- 83 (303)
..+.||+.-+|. .. ....|...+.+++|||||++|+++ .|++|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~-~~--~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 101 GGLVGFDMLARK-VT--YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp TEEEEEETTTTE-EE--EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred CEEEEEECCCCc-eE--EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 445566654442 11 123445668889999999999985 789999999988 7654323333332
Q ss_pred ------eEEEEEccCCCcEEEEec---------------------------------CCCeEEEEcCccccCCCccceee
Q 022074 84 ------VNTVCFGDESGHLIYSGS---------------------------------DDNLCKVWDRRCLNVKGKPAGVL 124 (303)
Q Consensus 84 ------v~~l~~~~~~~~~l~s~s---------------------------------~dg~v~lWd~~~~~~~~~~~~~~ 124 (303)
+..+.|+| +++.|++++ .+..|++||+... ......
T Consensus 177 ~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~----~~~~~~ 251 (706)
T 2z3z_A 177 QREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG----KTVYLQ 251 (706)
T ss_dssp GGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT----EEEECC
T ss_pred hhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC----ceEeec
Confidence 47899976 577888776 4468999997532 211112
Q ss_pred --cccccCeEEEEeCCCCCEEEEEeCCC-----cEEEEEcccccCCcccccCccceeee--ceeeeCCC--CCccccCCC
Q 022074 125 --MGHLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGFRSYEWD--YRWMDYPP--QARDLKHPC 193 (303)
Q Consensus 125 --~~h~~~v~~~~~~~~~~~l~s~~~D~-----~v~lWdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~ 193 (303)
..|...+..++|+|+|++|++++.|+ .|++||+........... .....+. .....+.+ +.+.+....
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE-ccCCCeECccCCceeecCCCCEEEEEEc
Confidence 24666789999999999999988776 999999865411000000 0000000 01123334 433222111
Q ss_pred -CC--cceEEecc-cceeeeEEE---eee-eeeeCCCeEEEEEe-CCC----eEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 194 -DQ--SVATYKGH-SVLRTLIRC---HFS-PVYSTGQKYIYTGS-HDS----CVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 194 -~~--~~~~~~~~-~~~~~~~~~---~~~-~~~s~~~~~latg~-~dg----~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
+. .+..++.. .....+... ... +.|+++++.|+.++ .++ .|+.||..+++ +..+. |...+.+++|
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~ 408 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQL 408 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEE
T ss_pred cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEE
Confidence 11 12222211 111111000 111 46788988776654 444 78888887766 34443 6778999999
Q ss_pred CCCCCeEEEEeCC----CCEEEeecCCC
Q 022074 261 HPSQPMLVSSSWD----GDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s~D----g~i~~Wd~~~~ 284 (303)
|||+++|+.++.+ +.+++||..+.
T Consensus 409 spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 409 SPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp CTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred CCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 9999988776554 45999998654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-14 Score=122.58 Aligned_cols=221 Identities=10% Similarity=0.058 Sum_probs=136.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEeccc-C-CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec-cc-
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAHT-S-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM-GH- 127 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~-~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~-~h- 127 (303)
+++++++.+++|++||+.+++....+.... . .+..++|+++...+++++..++.|.+||+.. ++....+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT----GETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT----CCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC----CCeEeeEEcCCc
Confidence 478999999999999999988766554322 1 4788999765444567777889999999753 22232222 11
Q ss_pred ---ccCeEEEEeCCCCCEEEEEe------------CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 128 ---LEGITFIDSRGDGRYLISNG------------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 128 ---~~~v~~~~~~~~~~~l~s~~------------~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
...+..+.++++++++++++ .++.|.+||+...........+. ....+.+.++.+.+...
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYGL 152 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEEE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-----CcceeEECCCCCEEEEe
Confidence 22566788999999888886 57999999986533221111110 11122334444333222
Q ss_pred CCCcceEEeccccee-eeEEEe---eeeeeeCCCeEEEEEeCC-C-----------------------eEEEEECCCCeE
Q 022074 193 CDQSVATYKGHSVLR-TLIRCH---FSPVYSTGQKYIYTGSHD-S-----------------------CVYVYDLVSGEQ 244 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~s~~~~~latg~~d-g-----------------------~i~iwd~~~~~~ 244 (303)
...+..++-..... ...... ....++|++++++..+.+ + .|++||..+++.
T Consensus 153 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp -SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred -CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 22233332211100 000000 112466777765544432 2 478999998876
Q ss_pred E-EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 245 V-AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 245 ~-~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
. ..+..+...+.+++|+|++++|+++ ++.|.+||+...
T Consensus 232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~ 270 (337)
T 1pby_B 232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC
Confidence 4 3345566788999999999998888 799999998643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=146.34 Aligned_cols=204 Identities=12% Similarity=0.091 Sum_probs=132.6
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC---CeEEEEEccCCCcEEEEecC---------CCeEEEEcC
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGSD---------DNLCKVWDR 111 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~s~---------dg~v~lWd~ 111 (303)
+++|+|+|++++ .+.|++|++||+.+++....+..|.. .+..++|+| +++.|++++. +++|++||+
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEEC
Confidence 678999996555 45699999999999986654444433 488999976 5788887765 789999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
....... ...+ ...+..++|+|||+.|+.+. |+.|++||+...........
T Consensus 98 ~~g~~~~--~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~----------------------- 148 (719)
T 1z68_A 98 SNGEFVR--GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFN----------------------- 148 (719)
T ss_dssp TTTEECC--SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCC-----------------------
T ss_pred CCCcccc--ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecC-----------------------
Confidence 6322100 0112 24577889999999999885 78999999864321100000
Q ss_pred CCCCcceEEeccccee---eeEEEeeeeeeeCCCeEEEEEeCCC----------------------------------eE
Q 022074 192 PCDQSVATYKGHSVLR---TLIRCHFSPVYSTGQKYIYTGSHDS----------------------------------CV 234 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~latg~~dg----------------------------------~i 234 (303)
......+.|+.... ........+.|||||++|++++.|. .|
T Consensus 149 --~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 149 --GRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp --CBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred --CCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 00000111211000 0000012456889999999987652 89
Q ss_pred EEEECCCCeEE--------EEeecCCCCeEEEEECCCCCeEEEEeCCC----CEEEee
Q 022074 235 YVYDLVSGEQV--------AALKYHTSPVRDCSWHPSQPMLVSSSWDG----DVVRWE 280 (303)
Q Consensus 235 ~iwd~~~~~~~--------~~~~~h~~~I~~v~~sp~~~~las~s~Dg----~i~~Wd 280 (303)
++||+.+++.. ..+..|...+.+++||||++++++....+ .|.+||
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 99999887642 11335788899999999988877754332 388888
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=138.13 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=84.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCC---e--EEEEEccCCCcEEEEecCC---------C
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD---V--NTVCFGDESGHLIYSGSDD---------N 104 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~---v--~~l~~~~~~~~~l~s~s~d---------g 104 (303)
.....++.|+|||++++++ |++|++||+.+++....+..|... + ..+.|+| +++.++.++.+ +
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSCEEE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEccce
Confidence 3346689999999988886 999999999999876656666532 2 3478876 57888888765 5
Q ss_pred eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 105 LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 105 ~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.+.+||+... + ...+..|...+...+|+|||+.|+.+ .|+.|++||+..
T Consensus 93 ~~~~~d~~~~----~-~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~ 141 (740)
T 4a5s_A 93 SYDIYDLNKR----Q-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN 141 (740)
T ss_dssp EEEEEETTTT----E-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred EEEEEECCCC----c-EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCC
Confidence 6679997532 2 22355677789999999999999888 478999999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-12 Score=108.09 Aligned_cols=237 Identities=11% Similarity=0.125 Sum_probs=145.6
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe------cccCCeEEEEEccCCCcEEEEecC-CCeEEE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------AHTSDVNTVCFGDESGHLIYSGSD-DNLCKV 108 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~l 108 (303)
.|+-....+++++++|+.+++.+.++.|++||.+ ++....+. .+...+..+++.+++++++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566678999999999988888889999999987 44444442 233567888885455667666643 889999
Q ss_pred EcCccccCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 109 WDRRCLNVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 109 Wd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
||.. +.....+. .+...+..+++.++++++++...++.|.+||..... ....... ... .....+.+.+...
T Consensus 105 ~d~~-----g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~-~~~-~~p~~i~~~~~g~ 176 (286)
T 1q7f_A 105 YNQY-----GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LHKFGCS-KHL-EFPNGVVVNDKQE 176 (286)
T ss_dssp ECTT-----SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEEECT-TTC-SSEEEEEECSSSE
T ss_pred ECCC-----CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EEEeCCC-Ccc-CCcEEEEECCCCC
Confidence 9942 22233332 234567889999999988888889999999964211 0000000 000 0011122222222
Q ss_pred cccCC-CCCcceEEecccceeeeE------EEeeeeeeeCCCeEEEEEeCCC-eEEEEECCCCeEEEEeecCCC--CeEE
Q 022074 188 DLKHP-CDQSVATYKGHSVLRTLI------RCHFSPVYSTGQKYIYTGSHDS-CVYVYDLVSGEQVAALKYHTS--PVRD 257 (303)
Q Consensus 188 ~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~h~~--~I~~ 257 (303)
.+... ....+..++......... .......++++++++++...++ .|++||. +++.+..+..+.. .+.+
T Consensus 177 l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 177 IFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp EEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred EEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 11111 112222222111100000 0112234678888888888776 9999996 5666766665533 4789
Q ss_pred EEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 258 CSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
++++|+++++++ +.|+.|++|+...
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEECCCCcEEEE-CCCCeEEEEEccc
Confidence 999999998887 5799999999753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-14 Score=134.47 Aligned_cols=251 Identities=11% Similarity=0.017 Sum_probs=141.3
Q ss_pred hccccccccccCcCcccccCCCccc---ceEEEEEcCCCCEEEEeeC---------CCeEEEEECCCCceEEEEecccCC
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSF---GIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSD 83 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~s~~g~~l~sgs~---------Dg~v~lwd~~~~~~~~~~~~h~~~ 83 (303)
+..+.+|+.-+|... ....+|.. .+.+++|||||++|+.++. |++|++||+.+++... ...-...
T Consensus 35 d~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~-~~~l~~~ 111 (719)
T 1z68_A 35 DNNIVLYNIETGQSY--TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR-GNELPRP 111 (719)
T ss_dssp TSCEEEEESSSCCEE--EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCSS
T ss_pred CCCEEEEEcCCCcEE--EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccc-ceecCcc
Confidence 455667776555422 12234443 4899999999999999876 7899999999986510 0111356
Q ss_pred eEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-----CccceeecccccC---------eEEEEeCCCCCEEEEEeCC
Q 022074 84 VNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHLEG---------ITFIDSRGDGRYLISNGKD 149 (303)
Q Consensus 84 v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-----~~~~~~~~~h~~~---------v~~~~~~~~~~~l~s~~~D 149 (303)
+..++|+| +++.|+.+. ++.|++||+...... +.....+.||.+. ...+.|+|||++|++++.|
T Consensus 112 ~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 112 IQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp BCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred cccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 88999976 477777775 789999997532110 0000012222221 1478999999999998865
Q ss_pred -CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEe--cccce-----------eeeEEEeee
Q 022074 150 -QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK--GHSVL-----------RTLIRCHFS 215 (303)
Q Consensus 150 -~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~ 215 (303)
+.+++|.+...... ...... ...++...... ....+..++ +.... .........
T Consensus 190 ~~~~~~~~~~~~~~~------~~~~~~---~~~yp~~g~~~---~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (719)
T 1z68_A 190 DTDIPVIAYSYYGDE------QYPRTI---NIPYPKAGAKN---PVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSW 257 (719)
T ss_dssp CTTSCEEEEEECCSS------SSCEEE---EEECCBTTSCC---CEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEE
T ss_pred CCCCceEEeeccCCC------CCccce---eecCCCCCCCC---CeeEEEEEECCCCCccceeEccCCccCCCCcceEEE
Confidence 55666654321110 000000 01111111000 000011111 00000 000112235
Q ss_pred eeeeCCCeEEEEEeCC----CeEEEEE----CCCCeEEEEe----ecCCCCeE-----EEEECCCCCeEE--EEeCCCC-
Q 022074 216 PVYSTGQKYIYTGSHD----SCVYVYD----LVSGEQVAAL----KYHTSPVR-----DCSWHPSQPMLV--SSSWDGD- 275 (303)
Q Consensus 216 ~~~s~~~~~latg~~d----g~i~iwd----~~~~~~~~~~----~~h~~~I~-----~v~~sp~~~~la--s~s~Dg~- 275 (303)
+.||||++++++.... ..|++|| ..+++....+ ..|...+. .++|||||+.|+ ++..+|.
T Consensus 258 ~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 258 LTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCE
T ss_pred eEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCce
Confidence 6688998887775432 3489999 8777654444 46777777 899999999554 4556665
Q ss_pred -EEEeecCC
Q 022074 276 -VVRWEFPG 283 (303)
Q Consensus 276 -i~~Wd~~~ 283 (303)
|.+|++.+
T Consensus 338 ~l~~~~~~~ 346 (719)
T 1z68_A 338 HIHYIKDTV 346 (719)
T ss_dssp EEEEESSCS
T ss_pred EEEEEECCC
Confidence 55556543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-13 Score=126.56 Aligned_cols=206 Identities=10% Similarity=-0.003 Sum_probs=135.9
Q ss_pred CCcccceEEEEEcCCCCEEEEe--eCCCeEEEEECCCCceEEEEecccCCeE---------EEEEcc-CCCcE-EE-Eec
Q 022074 36 GGYSFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSLRILAHTSDVN---------TVCFGD-ESGHL-IY-SGS 101 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sg--s~Dg~v~lwd~~~~~~~~~~~~h~~~v~---------~l~~~~-~~~~~-l~-s~s 101 (303)
.+|...+..++|++++-++++. +.++...||....+....++..|...+. ...|+. ++++. |+ +..
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~ 99 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF 99 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC
Confidence 5788889999999886666666 5688999998655555566767766655 666751 34555 44 444
Q ss_pred CCCeEEEEcCccccCCC-ccceeecc-----cccCeEEEEeCCCCCEEEEEeCC----------CcEEEEEcccccCC--
Q 022074 102 DDNLCKVWDRRCLNVKG-KPAGVLMG-----HLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRKMSSN-- 163 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~-~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~D----------~~v~lWdl~~~~~~-- 163 (303)
.+..|.+|++.. .+ .....+.. |...+..++|+|||+.|+.++.| ..|++||+......
T Consensus 100 ~~~~l~~~~~~~---~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 100 GDQRLYAFEPDA---PGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp TTCCEEEECTTS---TTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred CCCeEEEEcCCC---CCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 466777777530 01 12233334 56678889999999999988877 57888887531000
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCcceEEe-cccceeeeEEEeeeeeeeCCCeEEEEEeCC--------CeE
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------SCV 234 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~latg~~d--------g~i 234 (303)
... ..+. .+. .....+.+||||++|+.++.+ ..|
T Consensus 177 ~~~-------------------------------~~l~~~~~------~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i 219 (662)
T 3azo_A 177 SAV-------------------------------RELSDDAH------RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTEL 219 (662)
T ss_dssp GGS-------------------------------EESSCSCS------SEECCCEECTTSSEEEEEEECTTCCTTTCEEE
T ss_pred Cce-------------------------------eEEEecCC------CcccCceECCCCCEEEEEECCCCCCCCCCcEE
Confidence 000 0000 000 012346689999999988755 379
Q ss_pred EEEECC-CC---eEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 235 YVYDLV-SG---EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 235 ~iwd~~-~~---~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++||+. ++ +.......|...+..++|||||+++++++.|+..++|.+
T Consensus 220 ~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~ 270 (662)
T 3azo_A 220 KTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRV 270 (662)
T ss_dssp EEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEE
T ss_pred EEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEE
Confidence 999998 57 444444556788999999999999899988984444443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-12 Score=111.51 Aligned_cols=263 Identities=11% Similarity=0.060 Sum_probs=154.5
Q ss_pred EEEEEccCchh-hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCce
Q 022074 5 VHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKL 73 (303)
Q Consensus 5 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~ 73 (303)
+-..+.|+..+ |..+.|++.-+|.-. ...+.| ..+ .++|+|||+++++++ .+++|.+||+.+.+.
T Consensus 18 ~yv~~~~~~~~~d~~v~v~D~~t~~~~-~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 18 IYVMDSVFMHLTESRVHVYDYTNGKFL-GMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp EEEEECCGGGGGGCEEEEEETTTCCEE-EEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred EEEECCCCCccccCeEEEEECCCCeEE-EEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 45566666544 677888886565422 223233 344 899999999999986 367899999998887
Q ss_pred EEEEecc------cCCeEEEEEccCCCcEEEEecC--CCeEEEEcCccccCCCcccee-ecccccCeEEEEeCCCC-CEE
Q 022074 74 SLRILAH------TSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDG-RYL 143 (303)
Q Consensus 74 ~~~~~~h------~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l 143 (303)
..++... ......+++++ ++++|+++.. +++|.+||+.. .+.... +. . .....+.+.|++ ..+
T Consensus 94 ~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~----~~~~~~~i~-~-~~~~~v~~~p~~~~~~ 166 (361)
T 2oiz_A 94 EKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAK----GDYVEDVTA-A-AGCWSVIPQPNRPRSF 166 (361)
T ss_dssp EEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTT----TEEEEEEGG-G-TTEEEEEECTTSSSEE
T ss_pred EEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCC----CcEEEEEec-C-CCcceeEEcCCCCeeE
Confidence 6665432 23567888975 5777777753 67999999863 223333 21 1 122223445554 678
Q ss_pred EEEeCCCcEEEEEcccccCCc-ccccCccceeeec----eeeeCCCCCcc-ccCCCCCcceEEecccceeee--------
Q 022074 144 ISNGKDQAIKLWDIRKMSSNA-SCNLGFRSYEWDY----RWMDYPPQARD-LKHPCDQSVATYKGHSVLRTL-------- 209 (303)
Q Consensus 144 ~s~~~D~~v~lWdl~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------- 209 (303)
++.+.|+.+.+|++....... .... ...++. ......++... +.......+..++-.......
T Consensus 167 ~~~~~dg~~~~v~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 243 (361)
T 2oiz_A 167 MTICGDGGLLTINLGEDGKVASQSRS---KQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN 243 (361)
T ss_dssp EEEETTSSEEEEEECTTSSEEEEEEC---CCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC
T ss_pred EEECCCCcEEEEEECCCCcEeeeccc---cceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccC
Confidence 888999999999875311100 0000 000000 00000000000 000001111111110000000
Q ss_pred ---------EEEeeeeeeeCCCeEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEE
Q 022074 210 ---------IRCHFSPVYSTGQKYIYTGSH-----------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 210 ---------~~~~~~~~~s~~~~~latg~~-----------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las 269 (303)
........++++++.++.+.+ ++.|.+||..+++.+.++..+. +.+++|+||+++|++
T Consensus 244 ~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 244 DEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp HHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred ccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEE
Confidence 000001246788776666543 3589999999999999998877 899999999999998
Q ss_pred EeCCCCEEEeecCCC
Q 022074 270 SSWDGDVVRWEFPGN 284 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~~ 284 (303)
++. +++.+||.+..
T Consensus 322 ~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 322 LDG-GNVNVYDISQP 335 (361)
T ss_dssp ECS-SCEEEEECSSS
T ss_pred eCC-CeEEEEECCCC
Confidence 887 99999997653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-12 Score=112.87 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=141.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc-eEEEE---------ecccCCeEEEEEccCCCcEEEEec-CCCe
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---------LAHTSDVNTVCFGDESGHLIYSGS-DDNL 105 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~-~~~~~---------~~h~~~v~~l~~~~~~~~~l~s~s-~dg~ 105 (303)
++-.....++++++|+.+++...++.|++||..... ....+ ..+......+++.+++++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 444578899999999988888889999999986552 23333 233346889999765688888886 6999
Q ss_pred EEEEcCccccCCCccceeec----------ccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCcccee
Q 022074 106 CKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYE 174 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~ 174 (303)
|++||.. +.....+. ++......++++++ +.++++...++.|++||..........
T Consensus 168 I~~~~~~-----g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-------- 234 (329)
T 3fvz_A 168 IVQFSPS-----GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-------- 234 (329)
T ss_dssp EEEECTT-----SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE--------
T ss_pred EEEEcCC-----CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE--------
Confidence 9999943 22232232 22234778899998 788888889999999997622111000
Q ss_pred eeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC------CCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 175 WDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST------GQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
..+.. ..... ...++| ++...++...+..|++||..+++.+..+
T Consensus 235 ------~~~~~--------~~~~~----------------~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 235 ------KHASF--------GRNVF----------------AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ------CCTTT--------TTCEE----------------EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred ------ecccc--------CCCcc----------------eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 00000 00000 011222 3344444555679999999999988887
Q ss_pred e---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 K---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
. .+...+.+++++|+|.++++...++.|++|++.+.
T Consensus 285 ~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 285 KPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred cCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3 66778999999999999999999999999998653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-13 Score=117.55 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=121.5
Q ss_pred EEEcCCCCEEEEeeC-CC--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 45 LKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 45 l~~s~~g~~l~sgs~-Dg--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
.+|+|||++|+.++. ++ .|.+||+.+++.......+...+..++|+| +++.|+.++.++.|++||+.. ++..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~----g~~~ 115 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLAT----LEEN 115 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTT----CCEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCC----Ccce
Confidence 789999999999887 67 488889998876544444555555678975 578888888899999999763 2223
Q ss_pred eeecccccCeEE--EEeCCCCCEEEEEe----------------------CCCcEEEEEcccccCCcccccCccceeeec
Q 022074 122 GVLMGHLEGITF--IDSRGDGRYLISNG----------------------KDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 122 ~~~~~h~~~v~~--~~~~~~~~~l~s~~----------------------~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
..+..+...+.. ..+++++.+++... .+..|.+||+....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------------- 179 (388)
T 3pe7_A 116 VVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------------- 179 (388)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------------
T ss_pred eeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----------------
Confidence 233333333322 23478888876422 22444555543210
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCC------CeEEEEECCCCeEEEEeec
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHD------SCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~d------g~i~iwd~~~~~~~~~~~~ 250 (303)
...+..+.. ....+.++| +++.|+....+ ..|+++|...++. ..+..
T Consensus 180 -------------------~~~l~~~~~------~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~ 233 (388)
T 3pe7_A 180 -------------------STVILQENQ------WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT 233 (388)
T ss_dssp -------------------EEEEEEESS------CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC
T ss_pred -------------------eEEeecCCc------cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee
Confidence 001110100 112456889 89988877653 3788889876543 34433
Q ss_pred CC--CCeEEEEECCCCCeEEEEeC-CC----CEEEeecCCC
Q 022074 251 HT--SPVRDCSWHPSQPMLVSSSW-DG----DVVRWEFPGN 284 (303)
Q Consensus 251 h~--~~I~~v~~sp~~~~las~s~-Dg----~i~~Wd~~~~ 284 (303)
+. ..+...+|||||+.|+..+. ++ .|.+||+.+.
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL 274 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence 43 35888999999997765443 22 2999998754
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=108.34 Aligned_cols=208 Identities=12% Similarity=0.074 Sum_probs=139.6
Q ss_pred ceEEEEEcCCCCEEEEeeCC------------------------CeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGSSD------------------------DCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGH 95 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~D------------------------g~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~ 95 (303)
.+.+|+++++|+.+++.+.+ ++|.+||..+++....+. .+......+++.+ +++
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~ 103 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGN 103 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-TSC
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-CCC
Confidence 48999999999988888777 479999999888765443 3445788999964 577
Q ss_pred EEEEecCCCeEEEEcCccccCCCccceee---------cccccCeEEEEeCC-CCCEEEEEe-CCCcEEEEEcccccCCc
Q 022074 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVL---------MGHLEGITFIDSRG-DGRYLISNG-KDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 96 ~l~s~s~dg~v~lWd~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~-~~~~l~s~~-~D~~v~lWdl~~~~~~~ 164 (303)
++++...++.|++||..... .....+ .++......+++++ ++.++++.+ .++.|++||.... ..
T Consensus 104 l~v~d~~~~~v~~~~~~g~~---~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-~~- 178 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKE---GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-FV- 178 (329)
T ss_dssp EEEEETTTTEEEEECTTCSS---CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-EE-
T ss_pred EEEEECCCCEEEEEeCCCCe---EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-EE-
Confidence 88888889999999964210 022222 23445678899999 788888887 6999999984311 00
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCe
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~ 243 (303)
...+. .. ... .. ... .........++++ +.++++...+++|++||..+++
T Consensus 179 -~~~~~-----------~g-~~~---~~---~~~----------~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 179 -TQWGE-----------ES-SGS---SP---RPG----------QFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp -EEECE-----------EC-CSS---SC---CTT----------EESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred -EEecc-----------CC-CCC---CC---CCc----------ccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 00000 00 000 00 000 0001112346677 8888888899999999999899
Q ss_pred EEEEee--cCCCCeEEEEECC------CCCeEEEEeCCCCEEEeecCC
Q 022074 244 QVAALK--YHTSPVRDCSWHP------SQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 244 ~~~~~~--~h~~~I~~v~~sp------~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+..+. .+...+.+++|+| +++.+++...+..+++|+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 230 FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 888774 4567889999999 444444444556899999653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.1e-12 Score=110.98 Aligned_cols=239 Identities=11% Similarity=0.038 Sum_probs=140.3
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE-ccCCCcEEEE---------------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-GDESGHLIYS--------------- 99 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~l~s--------------- 99 (303)
.+|...+..+.|+|||+.|+.++.++.|++||+.+++.......+...+....| ..++++.++.
T Consensus 77 ~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 77 EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHH
T ss_pred eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccc
Confidence 455555667789999999999999999999999998866555555554444433 1345666653
Q ss_pred -------ecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCC------CcEEEEEcccccCCcc
Q 022074 100 -------GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNAS 165 (303)
Q Consensus 100 -------~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D------~~v~lWdl~~~~~~~~ 165 (303)
...+..|.+||+.. +. ...+..+...+..+.++| +|+.|+..+.+ ..|.++|+........
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~----g~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l 231 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKT----GE-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV 231 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTT----CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred hhhhhhccCCcceEEEEECCC----Cc-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence 23457888999752 22 334445666788899999 99988877653 3666666543211100
Q ss_pred cccCccceeeeceeeeCCCCCccccCCC---CC---cceEEeccccee-eeEE------E---eeeeeeeCCCeEEEEE-
Q 022074 166 CNLGFRSYEWDYRWMDYPPQARDLKHPC---DQ---SVATYKGHSVLR-TLIR------C---HFSPVYSTGQKYIYTG- 228 (303)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~-~~~~------~---~~~~~~s~~~~~latg- 228 (303)
... .. ........+.|+.+.+.... .. .+..++-..... .+.. . .....|+|+|+.|+..
T Consensus 232 ~~~--~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 232 KTH--AE-GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp CCC--CT-TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred eeC--CC-CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 000 00 00111223455554332211 00 122222111100 0100 0 0112478888887753
Q ss_pred --------eCCCeEEEEECCCCeEEEEeecCCC-----------CeEEEEECCCCCeEEEEe-CCCCEEEeecCC
Q 022074 229 --------SHDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 283 (303)
Q Consensus 229 --------~~dg~i~iwd~~~~~~~~~~~~h~~-----------~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~ 283 (303)
..+..|++||+.+++. ..+..|.. .+.+++|||||+.|+.++ .+|...+|.+..
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp --------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred eeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 5567999999988775 44555655 578899999998766554 578888887653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=124.00 Aligned_cols=223 Identities=9% Similarity=-0.013 Sum_probs=138.2
Q ss_pred cccccccccCcCcccccCCCcccceE---------EEEEc--CCCCE-EEEeeC-CCeEEEEECC--C-CceEEEEec--
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIF---------SLKFS--TDGRE-LVAGSS-DDCIYVYDLE--A-NKLSLRILA-- 79 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~---------~l~~s--~~g~~-l~sgs~-Dg~v~lwd~~--~-~~~~~~~~~-- 79 (303)
-..+|...+|.+. ....+|...+. +..|+ |||+. |+.++. +..|+++++. + +. ..++..
T Consensus 48 ~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~ 124 (662)
T 3azo_A 48 RATLVRRRADGAE--ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVS 124 (662)
T ss_dssp EEEEEEECTTSCE--EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCC
T ss_pred cEEEEEECCCCCc--ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCc
Confidence 3455555444432 22344544444 55555 99998 666543 5567777765 3 43 344555
Q ss_pred ---ccCCeEEEEEccCCCcEEEEecCC----------CeEEEEcCccccC-CCccceeec-ccccCeEEEEeCCCCCEEE
Q 022074 80 ---HTSDVNTVCFGDESGHLIYSGSDD----------NLCKVWDRRCLNV-KGKPAGVLM-GHLEGITFIDSRGDGRYLI 144 (303)
Q Consensus 80 ---h~~~v~~l~~~~~~~~~l~s~s~d----------g~v~lWd~~~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 144 (303)
|...+..++|+| +++.|++++.+ .+|++||+..... .......+. .+...+..++++|||++|+
T Consensus 125 ~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la 203 (662)
T 3azo_A 125 AVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAV 203 (662)
T ss_dssp CSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEE
T ss_pred cCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEE
Confidence 566788999976 47788877766 5899999753100 001223444 4556677788999999998
Q ss_pred EEeCCC--------cEEEEEccc-ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeee
Q 022074 145 SNGKDQ--------AIKLWDIRK-MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS 215 (303)
Q Consensus 145 s~~~D~--------~v~lWdl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (303)
..+.++ .|++||+.. .... . ......++. .....
T Consensus 204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~------------------------------~~~l~~~~~------~~~~~ 246 (662)
T 3azo_A 204 WLAWDHPRMPWEGTELKTARVTEDGRFA-D------------------------------TRTLLGGPE------EAIAQ 246 (662)
T ss_dssp EEEECTTCCTTTCEEEEEEEECTTSCEE-E------------------------------EEEEEEETT------BCEEE
T ss_pred EEECCCCCCCCCCcEEEEEEECCCCccc-c------------------------------cEEeCCCCC------ceEcc
Confidence 877553 688888752 1000 0 000011110 01134
Q ss_pred eeeeCCCeEEEEEeCCC--eEEEEECCCCeEEEEeecCCCC--------eEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 216 PVYSTGQKYIYTGSHDS--CVYVYDLVSGEQVAALKYHTSP--------VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg--~i~iwd~~~~~~~~~~~~h~~~--------I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
+.|+||++++++++.++ .|++||..+++.......+... +..++|+|+++++++++. +..++|.+.
T Consensus 247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 66889999888888888 7777777677654333333222 568999999999999999 999999543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=126.98 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=144.9
Q ss_pred hccccccccccCcCcccccCCCcc-----cceEEEEEcCCCCEEEEeeCC---------CeEEEEECCCCceEEEEeccc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYS-----FGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKLSLRILAHT 81 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~l~~s~~g~~l~sgs~D---------g~v~lwd~~~~~~~~~~~~h~ 81 (303)
+..+.+|+.-+|.... -..+|. .....++|||||++|+.++.+ +.+.+||+.+++.. ++..|.
T Consensus 35 ~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~ 111 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSV--FLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIP 111 (740)
T ss_dssp TTEEEEEETTTCCEEE--EECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCC
T ss_pred CCcEEEEECCCCceEE--EEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCC
Confidence 4556677776665321 123343 234558899999999999876 55679999998753 466677
Q ss_pred CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC-----Cccceeecccc---------cCeEEEEeCCCCCEEEEEe
Q 022074 82 SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK-----GKPAGVLMGHL---------EGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~-----~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~ 147 (303)
..+...+|+|+ ++.|+.+. |+.|++||+...... +.....+.++. .....+.|+|||++|+..+
T Consensus 112 ~~~~~~~~SPd-G~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 112 NNTQWVTWSPV-GHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp TTEEEEEECSS-TTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CcceeeEECCC-CCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 88999999864 77777664 689999997532110 00001122222 1123478999999999887
Q ss_pred CCCc-EEEEEcccccCCcccccCccceeeeceeeeCCCCCcc-----c--cCCCC---C---cceEEecccceeeeEEEe
Q 022074 148 KDQA-IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD-----L--KHPCD---Q---SVATYKGHSVLRTLIRCH 213 (303)
Q Consensus 148 ~D~~-v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~---~---~~~~~~~~~~~~~~~~~~ 213 (303)
.|.+ +++|++....... ...... ....++..+.. + ..... . ....+..-..........
T Consensus 190 ~d~~~v~~~~~~~~~~~~----~~~~~~---~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 262 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDES----LQYPKT---VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL 262 (740)
T ss_dssp EECTTCCEEEEEECCSTT----CSSCEE---EEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred EcccCCceEEEEeecCCC----CCCCcc---eeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEE
Confidence 6554 9999875321110 000000 11112211110 0 00000 0 011111000000001123
Q ss_pred eeeeeeCCCeEEEEEe----CCCeEEEEECCCCe----E--EEEe--ecCCCCeE-----EEEECCCCCeEE-EEeC-C-
Q 022074 214 FSPVYSTGQKYIYTGS----HDSCVYVYDLVSGE----Q--VAAL--KYHTSPVR-----DCSWHPSQPMLV-SSSW-D- 273 (303)
Q Consensus 214 ~~~~~s~~~~~latg~----~dg~i~iwd~~~~~----~--~~~~--~~h~~~I~-----~v~~sp~~~~la-s~s~-D- 273 (303)
..+.||||+++++... .+..|++||+.+++ + +..+ +.|...|. ..+|||||+.|+ ..++ +
T Consensus 263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 3567889999766653 34479999998886 2 1112 45666665 789999999776 6654 3
Q ss_pred -CCEEEeecCCC
Q 022074 274 -GDVVRWEFPGN 284 (303)
Q Consensus 274 -g~i~~Wd~~~~ 284 (303)
..|.+|+..+.
T Consensus 343 ~~~l~~~~~~~~ 354 (740)
T 4a5s_A 343 YRHICYFQIDKK 354 (740)
T ss_dssp CEEEEEEETTCS
T ss_pred ceEEEEEECCCC
Confidence 45677776543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-11 Score=117.89 Aligned_cols=207 Identities=11% Similarity=0.031 Sum_probs=128.8
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCC-----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL------ 105 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~------ 105 (303)
+|+..+.+++|||||++|+.++.++ +|++||+.+++.......+ ..+..++|+| +++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccccc
Confidence 5667899999999999998776543 8999999999765432222 2367889976 4677777776655
Q ss_pred ----------EEEEcCccccCCCccceeecc--cccCeEEEEeCCCCCEEEEEeC-----CCcEEEEEcccccCCccccc
Q 022074 106 ----------CKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGK-----DQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 106 ----------v~lWd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~-----D~~v~lWdl~~~~~~~~~~~ 168 (303)
|++|++..... .....+.. |...+..+.++++|++|+..+. +..|.+||+...........
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~--~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQS--EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGG--GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred cccccCCCCEEEEEECCCCcc--cceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 99999753211 11122222 3445778899999999887764 56888998764100000000
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC----CCeEEEEECCCCeE
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSGEQ 244 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~----dg~i~iwd~~~~~~ 244 (303)
....+..+.... . ..++++++.|+..+. .+.|.+||+.+++.
T Consensus 278 ---------------------------~~~~l~~~~~~~---~----~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~ 323 (710)
T 2xdw_A 278 ---------------------------KWVKLIDNFEGE---Y----DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE 323 (710)
T ss_dssp ---------------------------CCEEEECSSSSC---E----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred ---------------------------ceEEeeCCCCcE---E----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 000011110000 0 113455665555443 34699999987641
Q ss_pred --EEEeecCCC--CeEEEEECCCCCeEEEEeCCCCEE--Eeec
Q 022074 245 --VAALKYHTS--PVRDCSWHPSQPMLVSSSWDGDVV--RWEF 281 (303)
Q Consensus 245 --~~~~~~h~~--~I~~v~~sp~~~~las~s~Dg~i~--~Wd~ 281 (303)
...+..|.. .+.+++|++++.++++...|+..+ +|++
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 234444543 688999998888999999998654 5555
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-11 Score=105.67 Aligned_cols=185 Identities=12% Similarity=0.179 Sum_probs=113.8
Q ss_pred ccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCc-------eE------EEEecccCCeEEEEEccCCCcEEEEec-CC
Q 022074 39 SFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANK-------LS------LRILAHTSDVNTVCFGDESGHLIYSGS-DD 103 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~-------~~------~~~~~h~~~v~~l~~~~~~~~~l~s~s-~d 103 (303)
...+.+++|+|+|+++++++ .++.|++|++.... +. .....+......++|+|+ ++.++.++ .+
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~ 232 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD-GKFAYLINEIG 232 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT-SSEEEEEETTT
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC-CCEEEEEcCCC
Confidence 34568899999999776655 48899999887543 21 122344557789999764 66555554 78
Q ss_pred CeEEEEcCccccCCC-ccceeecccccCeEEEEeCCCCCEEEEEeC--CCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 104 NLCKVWDRRCLNVKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 104 g~v~lWd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
+.|.+||+....... ........+......+.++|+|++|++++. ++.|.+|++........
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~--------------- 297 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT--------------- 297 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE---------------
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE---------------
Confidence 999999975221100 001112233345678999999998876665 48999999852110000
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEE--ECCCCeEEEEe-ecCCCCeE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVY--DLVSGEQVAAL-KYHTSPVR 256 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iw--d~~~~~~~~~~-~~h~~~I~ 256 (303)
.+..+.... ......|+|++++|++++ .++.|.+| |..+++..... ..+...+.
T Consensus 298 ---------------~~~~~~~g~-------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~ 355 (361)
T 3scy_A 298 ---------------KVGYQLTGI-------HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPV 355 (361)
T ss_dssp ---------------EEEEEECSS-------CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEE
T ss_pred ---------------EeeEecCCC-------CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCe
Confidence 000000000 001234789999888887 67999996 44567654332 23445788
Q ss_pred EEEEC
Q 022074 257 DCSWH 261 (303)
Q Consensus 257 ~v~~s 261 (303)
|++|.
T Consensus 356 ~v~~~ 360 (361)
T 3scy_A 356 CLKFV 360 (361)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99885
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-11 Score=105.64 Aligned_cols=139 Identities=15% Similarity=0.166 Sum_probs=91.3
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEeccc------CCeEEE
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHT------SDVNTV 87 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~~l 87 (303)
.+..+.||+.-+|... .....+....+..++|+|+|++++ ++..++.|.+||+.+++....+..+. ..+..+
T Consensus 19 ~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~ 97 (349)
T 1jmx_B 19 YPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF 97 (349)
T ss_dssp TTTEEEEEETTTTEEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred CCCeEEEEECCCCcEE-EEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce
Confidence 3556677776555322 122223333577899999999765 45578999999999988765554322 237788
Q ss_pred EEccCCCcEEEEecCC------------CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 88 CFGDESGHLIYSGSDD------------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 88 ~~~~~~~~~l~s~s~d------------g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
+|+| +++.+++++.+ +.|.+||+..... ......+. +...+.+++++++++ ++.++. .|++|
T Consensus 98 ~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~ 171 (349)
T 1jmx_B 98 AISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKM 171 (349)
T ss_dssp EECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEE
T ss_pred EECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccc-cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEE
Confidence 9975 57788777755 8999999763221 12222332 334577888999999 555544 49999
Q ss_pred Ecccc
Q 022074 156 DIRKM 160 (303)
Q Consensus 156 dl~~~ 160 (303)
|+...
T Consensus 172 d~~~~ 176 (349)
T 1jmx_B 172 DVKTG 176 (349)
T ss_dssp CTTTC
T ss_pred eCCCC
Confidence 98754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=117.62 Aligned_cols=201 Identities=9% Similarity=-0.007 Sum_probs=127.1
Q ss_pred CCcccceEEEEEcCCCCEEE-----EeeCCCeEEEEECCCCceEEEEecccCCe--EEEEEccCCCcEEEEecCCCe---
Q 022074 36 GGYSFGIFSLKFSTDGRELV-----AGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCFGDESGHLIYSGSDDNL--- 105 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~-----sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~~l~s~s~dg~--- 105 (303)
.+|+..+.+++|||||++|+ .|+.+.+|++||+.+++... ..+...+ ..++|+| +++.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCC
Confidence 36788899999999999988 45556789999999987530 1222333 6789975 5778888887766
Q ss_pred ----------EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC----cEEEEEcccccCCcccccCcc
Q 022074 106 ----------CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ----AIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 106 ----------v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~----~v~lWdl~~~~~~~~~~~~~~ 171 (303)
|++|++.........+.....|...+..+.++++|++|+..+.++ .|.+||.....
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~---------- 263 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD---------- 263 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----------
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----------
Confidence 999997532211111212223445688899999999988877665 44444321100
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeE---E
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQ---V 245 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~---~ 245 (303)
...+..+.. ....+.+ +++++++... .++.|++||+.+++. .
T Consensus 264 -------------------------~~~l~~~~~------~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 264 -------------------------FRLLVKGVG------AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp -------------------------CEEEEECSS------CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred -------------------------eEEeecCCC------ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 000000000 0011222 3455444443 368999999987652 2
Q ss_pred EEeecC-CCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 246 AALKYH-TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 246 ~~~~~h-~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
..+..+ ...+.+++|+ ++.++++...|+..++|.+.
T Consensus 312 ~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 223333 4568899998 77899999999999998764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-09 Score=95.02 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=130.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC----CeEEEEcCc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD----NLCKVWDRR 112 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d----g~v~lWd~~ 112 (303)
++...+.+++|+++|+.++++..++.|++||.++++.......+...+..+++.+ +++++++...+ +.|.+||..
T Consensus 42 ~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~ 120 (333)
T 2dg1_A 42 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATEN 120 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTT
T ss_pred ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCC
Confidence 3444568999999999777888899999999988876543335667899999964 47777777666 689999965
Q ss_pred cccCCCccceeec--ccccCeEEEEeCCCCCEEEEEeCC----CcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 113 CLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 113 ~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~D----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
... ....+. .+...+..+.+.++|+++++...+ ....||.+.....
T Consensus 121 ~~~----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~------------------------ 172 (333)
T 2dg1_A 121 GDN----LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR------------------------ 172 (333)
T ss_dssp SCS----CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC------------------------
T ss_pred CCE----EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCC------------------------
Confidence 221 111111 234568889999999887776542 2334444321100
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEE-EEEeCCCeEEEEECCC-CeEEEE--------eecCCCCeE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVS-GEQVAA--------LKYHTSPVR 256 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-atg~~dg~i~iwd~~~-~~~~~~--------~~~h~~~I~ 256 (303)
....+... ........++++++.+ ++...++.|++||..+ ++.+.. +.++ ..+.
T Consensus 173 ---------~~~~~~~~------~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 173 ---------TVTPIIQN------ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD 236 (333)
T ss_dssp ---------CEEEEEEE------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred ---------EEEEeecC------CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence 00000000 0001123467888755 4556689999999863 332221 1222 3678
Q ss_pred EEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 257 DCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 257 ~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.++++++++++++...++.|.+||..+
T Consensus 237 ~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 237 SCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred ceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 899999999988888889999999743
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=101.43 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=119.0
Q ss_pred cceEEEEEcCCCCEEEEeeCC---C--eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC------------
Q 022074 40 FGIFSLKFSTDGRELVAGSSD---D--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD------------ 102 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~D---g--~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~------------ 102 (303)
..+..+.|||||++|+..+.+ + .|.+||+.+++... +..+.. +..++|+|+ ++.|+.++.
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEAKN-IRSLEWNED-SRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEESE-EEEEEECTT-SSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcCCC-ccceeECCC-CCEEEEEEccCCCcCCcEEEc
Confidence 357889999999999887754 3 37888888876543 333334 899999764 666666542
Q ss_pred ---------------CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC-------cEEEEEcccc
Q 022074 103 ---------------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ-------AIKLWDIRKM 160 (303)
Q Consensus 103 ---------------dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~-------~v~lWdl~~~ 160 (303)
...|++||+.. +.....+.. . .+..+.++|+| ++++++.+. ...||.+...
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~----~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTES----EEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp -CCCC---------CEEEEEEEETTT----TEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ccceeecCcccccCccceEEEEECCC----CeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC
Confidence 25688888752 222123333 3 67788899999 777776653 4455544310
Q ss_pred cCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC--------C
Q 022074 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD--------S 232 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d--------g 232 (303)
. ...+..+ .....+ +|+|++|+.++.+ .
T Consensus 209 ----~-------------------------------~~~l~~~-------~~~~~~--spdg~~l~~~~~~~~~~~~~~~ 244 (347)
T 2gop_A 209 ----K-------------------------------EEKMFEK-------VSFYAV--DSDGERILLYGKPEKKYMSEHN 244 (347)
T ss_dssp ----E-------------------------------EEEEEEE-------ESEEEE--EECSSCEEEEECCSSSCCCSSC
T ss_pred ----c-------------------------------eEEeccC-------cceeeE--CCCCCEEEEEEccccCCccccc
Confidence 0 0001000 000112 6788888777644 4
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEE-EEECCCCCeEEEEeCCCCEEEeecC
Q 022074 233 CVYVYDLVSGEQVAALKYHTSPVRD-CSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~h~~~I~~-v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.|++|| +++.......|...+.. +.|+ |+ ++++++.++..++| +.
T Consensus 245 ~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 245 KLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp EEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred eEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence 788888 55544444566678886 9999 88 99999999999999 86
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-10 Score=98.95 Aligned_cols=194 Identities=10% Similarity=0.049 Sum_probs=127.4
Q ss_pred ceEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
...++.|+|+|+ .++++..++.|..||..++ ...+..+...+..+++.+ +++++++...++.|.+||.... +
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g----~ 101 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGG----E 101 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTC----C
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCC----c
Confidence 367899999998 7778888999999999887 445566777889999965 5778877777889999997422 1
Q ss_pred cceee---ccc-ccCeEEEEeCCCCCEEEEEeCCC---------------cEEEEEcccccCCcccccCccceeeeceee
Q 022074 120 PAGVL---MGH-LEGITFIDSRGDGRYLISNGKDQ---------------AIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 120 ~~~~~---~~h-~~~v~~~~~~~~~~~l~s~~~D~---------------~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
..... .+. ...+..+.+.++|+++++.+.++ .-.||.+....
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g------------------- 162 (296)
T 3e5z_A 102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG------------------- 162 (296)
T ss_dssp EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS-------------------
T ss_pred EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCC-------------------
Confidence 11111 111 12456688899999888743211 12333332100
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC-CCeE---EEEeecCCCCeE
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-SGEQ---VAALKYHTSPVR 256 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~-~~~~---~~~~~~h~~~I~ 256 (303)
....+.... .......++++++.+++.+.++.|++||+. +++. ...+..+...+.
T Consensus 163 ---------------~~~~~~~~~------~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~ 221 (296)
T 3e5z_A 163 ---------------TLSAPIRDR------VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTD 221 (296)
T ss_dssp ---------------CEEEEECCC------SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCC
T ss_pred ---------------CEEEeecCC------CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCC
Confidence 000000000 001123477889888778888999999986 5554 233334556678
Q ss_pred EEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 257 DCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 257 ~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.++++++|+++++. ++.|.+|+..+
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~g 246 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPDG 246 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTTS
T ss_pred eEEECCCCCEEEEc--CCeEEEECCCC
Confidence 99999999977777 78999999764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-10 Score=96.50 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=130.5
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGH 127 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h 127 (303)
..++.|++++.|+.|.+||.++|+...++..+. ..+..+.+.+ ++++++ +.++.|..||.. ++.+-.+..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~~-----G~~~W~~~~~ 74 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITRD-----GRELWNIAAP 74 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECTT-----SCEEEEEECC
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECCC-----CCEEEEEcCC
Confidence 346889999999999999999999887777665 4688888865 578887 346789999852 2333333333
Q ss_pred -ccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccc
Q 022074 128 -LEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 205 (303)
Q Consensus 128 -~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (303)
...+..+.+.++|+++++.+. ++.+..+|.. .+. .|... ...... ..+..
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-----------l~~~~---~~~~~~-------------~~~~~ 126 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-----------LSKTE---FETGIE-------------RPHAQ 126 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-----------EEEEE---ECCSCS-------------SGGGS
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-----------EEEEe---ccCCCC-------------ccccc
Confidence 235777888999999999887 6666666532 110 01100 000000 00000
Q ss_pred eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 206 LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 206 ~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.....+.+++.++++...++.|..||.+ |+.+-.+..+ ..+.++.+.++++++++++.++.+..+|..
T Consensus 127 -------~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 127 -------FRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp -------CSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred -------ccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 0011235688999999999999999998 9988888754 456778899999999999988889888866
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=113.02 Aligned_cols=217 Identities=10% Similarity=0.074 Sum_probs=112.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCC---CeEEEEECCCCceEEEEecccCC-eEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSD-VNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~D---g~v~lwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
|...+.+++|+|||++|+..+.+ ..|++||+.+++.. .+..+... ...+.|+| +++.|+.++.++.|++||+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLET 111 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-ECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTT
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-EeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCC
Confidence 44447778999999998776543 46888999888653 34333333 33377875 578888888888999999752
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccccc-CCcccccCcc-----ceeeeceeeeCCCCCc
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS-SNASCNLGFR-----SYEWDYRWMDYPPQAR 187 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 187 (303)
+........+.. +.++++.|+..+.+....+|+..... +.... ..+. .....+.....
T Consensus 112 ----~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~-~~~~~~~~~~~~~~l~~~d~----- 175 (396)
T 3c5m_A 112 ----LEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSW-EKFAEFYHTNPTCRLIKVDI----- 175 (396)
T ss_dssp ----CCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH-HHHHHHHHTCCCEEEEEEET-----
T ss_pred ----CCcEEEEecccc------cCCCCCEEEeccCCccccccccccccCCCCcc-eeeeeeccCCCcceEEEEEC-----
Confidence 222222222222 22233334433333333333311000 00000 0000 00000000000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCC------CeEEEEECCCCeEEEEeecC--CCCeEEE
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHD------SCVYVYDLVSGEQVAALKYH--TSPVRDC 258 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~d------g~i~iwd~~~~~~~~~~~~h--~~~I~~v 258 (303)
.......+..+. .....+.|+| +++.|+..+.+ ..|++||...++.. .+..+ ...+..+
T Consensus 176 -----~~g~~~~~~~~~------~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 176 -----ETGELEVIHQDT------AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHE 243 (396)
T ss_dssp -----TTCCEEEEEEES------SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEE
T ss_pred -----CCCcEEeeccCC------cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccce
Confidence 000000000000 0112345788 67766665543 46999998765533 33223 2358889
Q ss_pred EECCCCCeEEEEeCC-----CCEEEeecCCC
Q 022074 259 SWHPSQPMLVSSSWD-----GDVVRWEFPGN 284 (303)
Q Consensus 259 ~~sp~~~~las~s~D-----g~i~~Wd~~~~ 284 (303)
+||||++.|+.++.+ +.|.+||+...
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 999999987777654 34999998653
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=104.10 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=121.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc---------eEE-EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---------LSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~---------~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
++..+++++....+++|+.|+ +++|+++.-. ... ....+.. |..++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999986 7779875432 111 2334555 999999 46788887 889999999
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
.+... .......|...+..+.+.+. .++.+..||.+.+||+......
T Consensus 113 v~sl~----~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--------------------------- 159 (388)
T 1xip_A 113 LEELS----EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--------------------------- 159 (388)
T ss_dssp SSSTT----CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred chhhh----ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc---------------------------
Confidence 86432 12234456666777665543 3888999999999998632110
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEe------e---cCCCCeEEEE
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAAL------K---YHTSPVRDCS 259 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~------~---~h~~~I~~v~ 259 (303)
.. ...+ .+..+||+| ++.|..||.+++|+...++. .+++ . +|...|.++.
T Consensus 160 --------~~------~~~V---s~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 160 --------QL------AQNV---TSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp --------EE------EESE---EEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred --------cc------cCCc---eEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 00 0001 123467777 67799999999999987774 4555 2 3778999999
Q ss_pred ECCCCCeEEE
Q 022074 260 WHPSQPMLVS 269 (303)
Q Consensus 260 ~sp~~~~las 269 (303)
|.+++.+|++
T Consensus 221 wl~~~~flv~ 230 (388)
T 1xip_A 221 ILSPQDFLAV 230 (388)
T ss_dssp ESSSSEEEEE
T ss_pred EecCCeEEEE
Confidence 9999998876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-09 Score=90.85 Aligned_cols=197 Identities=9% Similarity=0.018 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
...+++++++|+..+ +.+.++.|.+||..+.........+...+..+++.+ +++++++.. ++.|..||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~----- 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSN----- 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCS-----
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCc-----
Confidence 578999999998666 547788999998866543221123334678888864 466776666 889999996421
Q ss_pred cceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 120 PAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 120 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
....+. ........+.+.++|+++++...++.|.+||........ ...
T Consensus 98 ~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----------------~~~-------------- 146 (270)
T 1rwi_B 98 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----------------LPF-------------- 146 (270)
T ss_dssp CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----------------CCC--------------
T ss_pred eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----------------ecc--------------
Confidence 121221 223567888999999988888888999999753211000 000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.+.. ......++++++++++...++.|.+||...+........+...+.+++++++++++++...++.|.+
T Consensus 147 --~~~~-------~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 147 --TGLN-------DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp --CSCC-------SCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred --ccCC-------CceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 0000 0011224567887777777899999998876544333334467899999999988888888999999
Q ss_pred eecCCC
Q 022074 279 WEFPGN 284 (303)
Q Consensus 279 Wd~~~~ 284 (303)
|+..+.
T Consensus 218 ~~~~~~ 223 (270)
T 1rwi_B 218 LLAGST 223 (270)
T ss_dssp ECTTCS
T ss_pred EcCCCC
Confidence 997654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.7e-10 Score=93.42 Aligned_cols=199 Identities=8% Similarity=0.029 Sum_probs=131.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
..+.+++++++|+.+++.. ++.|.+||..+.............+..+++.+ +++++++...++.|.+|+.... .
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~----~ 140 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSK----T 140 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCC----S
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCc----e
Confidence 4577899999998555555 88999999877654321112335688999965 5778877777889999975311 1
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
..............+.+.++++++++...++.|.+||........ ... . ..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----------------~~~---------~-~~-- 191 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-----------------LPF---------T-DI-- 191 (270)
T ss_dssp CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-----------------CCC---------S-SC--
T ss_pred eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-----------------ecc---------c-CC--
Confidence 111111222356678889999988888788999999875321000 000 0 00
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
. ......+++++.++++...++.|.+||............+...+.+++++|+++++++...++.|+++
T Consensus 192 ----~-------~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 192 ----T-------APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp ----C-------SEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred ----C-------CceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 0 00112345677777777788999999987654332222334578999999999999999999999999
Q ss_pred ecCCC
Q 022074 280 EFPGN 284 (303)
Q Consensus 280 d~~~~ 284 (303)
+....
T Consensus 261 ~~~~~ 265 (270)
T 1rwi_B 261 TSLEH 265 (270)
T ss_dssp CCCGG
T ss_pred cCCCc
Confidence 97643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=103.40 Aligned_cols=230 Identities=12% Similarity=0.008 Sum_probs=129.9
Q ss_pred EEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEE---E----------------EEccCCCcEEEEe---
Q 022074 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT---V----------------CFGDESGHLIYSG--- 100 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~---l----------------~~~~~~~~~l~s~--- 100 (303)
..+.|+|||++|+..+.++.|++||+.+++.......+...... + .|+| +++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~ 162 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFY 162 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeec
Confidence 34789999999999999999999999988755433333332222 2 2333 23333322
Q ss_pred --cCCCeEEEEcCccccCCCccceeecccccCeEEEEeCC-CCCEEEEEeCC------CcEEEEEcccccCCcccccCcc
Q 022074 101 --SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKD------QAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 101 --s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D------~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
..+..|++||+.. +. ...+..+...+..+.++| ++..|+..+.+ ..|.+||+.......... .
T Consensus 163 ~~~~~~~l~~~d~~~----g~-~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~ 234 (396)
T 3c5m_A 163 HTNPTCRLIKVDIET----GE-LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---H 234 (396)
T ss_dssp HTCCCEEEEEEETTT----CC-EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---C
T ss_pred cCCCcceEEEEECCC----Cc-EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---c
Confidence 3566888998752 22 223334566788889999 78777665543 357778875322110000 0
Q ss_pred ceeeeceeeeCCCCCccccCCC----CCc--ceEEecccc-eeeeE--EEeeeeeeeC-CCeEEEEEe------------
Q 022074 172 SYEWDYRWMDYPPQARDLKHPC----DQS--VATYKGHSV-LRTLI--RCHFSPVYST-GQKYIYTGS------------ 229 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~-~~~~~--~~~~~~~~s~-~~~~latg~------------ 229 (303)
...+......+.|+.+.+.... ... +..++-... ...+. ... .+.+++ ++++++.++
T Consensus 235 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 235 AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPC-SHLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSE-EEEEECSSSSEEEEEECCC---------
T ss_pred CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCC-CCCccCCCCceEEEecCCcceeeccccc
Confidence 0011122234445544332110 011 333321111 01110 011 166888 999888765
Q ss_pred ----CCCeEEEEECCCCeEEEEeecCCC-----------CeEEEEECCCCCeEEEEeC-CCCEEEeecCC
Q 022074 230 ----HDSCVYVYDLVSGEQVAALKYHTS-----------PVRDCSWHPSQPMLVSSSW-DGDVVRWEFPG 283 (303)
Q Consensus 230 ----~dg~i~iwd~~~~~~~~~~~~h~~-----------~I~~v~~sp~~~~las~s~-Dg~i~~Wd~~~ 283 (303)
.+..|++||..+++. ..+..+.. .+..++|+||++.|+.++. ++...+|.+..
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 347899999988764 33444543 2567899999998776654 67777776643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-09 Score=92.21 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=124.8
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc----cCCeEEEEEccCCCcEEEE----ec-------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYS----GS------- 101 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s----~s------- 101 (303)
.+...+.+++++++|+.+++...++.|.+||.++++........ ...++.+++.+ +++++++ |+
T Consensus 66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSS
T ss_pred CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccc
Confidence 34556899999999998777777789999999888754322221 12456788864 5778887 33
Q ss_pred ------CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceee
Q 022074 102 ------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW 175 (303)
Q Consensus 102 ------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~ 175 (303)
..+.|..++.. + ....+..+......++++++++.+++.+.++.|.+||+.... ... ..
T Consensus 145 ~~~~~~~~~~l~~~~~~-----g-~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g---~~~---~~--- 209 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPD-----G-TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG---ETE---YQ--- 209 (296)
T ss_dssp CCCCCSSSCEEEEECTT-----S-CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS---CEE---EE---
T ss_pred cccccCCCcEEEEECCC-----C-CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC---cCc---CC---
Confidence 13455555532 1 223344555667889999999988888888999999985210 000 00
Q ss_pred eceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 022074 176 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I 255 (303)
....... . .. .....++++|+++++. ++.|.+||.. ++.+..+..+.. +
T Consensus 210 -~~~~~~~----------~---------~~-------p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~ 258 (296)
T 3e5z_A 210 -GVHFTVE----------P---------GK-------TDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-T 258 (296)
T ss_dssp -EEEECCS----------S---------SC-------CCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-C
T ss_pred -CeEeeCC----------C---------CC-------CCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-c
Confidence 0000000 0 00 0012356778866665 8899999986 777788887777 9
Q ss_pred EEEEE-CCCCCeEEEEeCCC
Q 022074 256 RDCSW-HPSQPMLVSSSWDG 274 (303)
Q Consensus 256 ~~v~~-sp~~~~las~s~Dg 274 (303)
++++| +|+++.|..++.++
T Consensus 259 ~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 259 SNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CEEEEESTTSCEEEEEETTE
T ss_pred eeEEEECCCCCEEEEEcCCe
Confidence 99999 68999888887763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-10 Score=97.75 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=115.6
Q ss_pred EEEEeeCC--CeEEEEEC--CCCceEEEEe---cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec
Q 022074 53 ELVAGSSD--DCIYVYDL--EANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 125 (303)
Q Consensus 53 ~l~sgs~D--g~v~lwd~--~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~ 125 (303)
++++|+.. +.|.+|++ .++++..... .....+..++|++ ++++|++++.+ .|.+||+.. .++.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~---~g~~~~~~- 77 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKS---PTEIVHEA- 77 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEE---TTEEEEEE-
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECC---CCCEEEee-
Confidence 45666653 56888765 5565432211 2334678899975 57788888877 999999741 12222111
Q ss_pred ccc--cCeEEEEeCCCCCE--EEEEe-------------CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcc
Q 022074 126 GHL--EGITFIDSRGDGRY--LISNG-------------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARD 188 (303)
Q Consensus 126 ~h~--~~v~~~~~~~~~~~--l~s~~-------------~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (303)
.+. .....++++|+|++ +++++ .++++++|++...-. . ...
T Consensus 78 ~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~---~-------~~~------------ 135 (365)
T 1jof_A 78 SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK---L-------EKN------------ 135 (365)
T ss_dssp EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC---E-------EEE------------
T ss_pred EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc---C-------cce------------
Confidence 111 22445778999984 44553 689999999853100 0 000
Q ss_pred ccCCCCCcceEEe-cccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECC-CCeEE--EEee--cCCCCeEEEEEC
Q 022074 189 LKHPCDQSVATYK-GHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV-SGEQV--AALK--YHTSPVRDCSWH 261 (303)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~-~~~~~--~~~~--~h~~~I~~v~~s 261 (303)
+..+. .+. .......++|+|+++++++ .++.|++||+. +++.. ..+. .|...+..++||
T Consensus 136 --------~~~~~~~~~------~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 136 --------VQNYEYQEN------TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp --------EEEEECCTT------CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred --------EeeEEeCCC------CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 00000 000 0012345789999888765 47899999998 77642 3343 245678999999
Q ss_pred CCCCeEEEEeC-CCCEEEeecC
Q 022074 262 PSQPMLVSSSW-DGDVVRWEFP 282 (303)
Q Consensus 262 p~~~~las~s~-Dg~i~~Wd~~ 282 (303)
|||++|+.+++ ++++.+|++.
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEEe
Confidence 99998887775 6899999875
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.9e-10 Score=107.49 Aligned_cols=201 Identities=9% Similarity=0.000 Sum_probs=122.0
Q ss_pred CcccceEEEEEcCCCCEEEEeeCC-----CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCe------
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL------ 105 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~D-----g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~------ 105 (303)
+|+..+.+++|||||++|+.++.+ .+|++||+.+++.... ..+...+..++|+|+ +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT--SEEEEEECCCC------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC--CEEEEEEecCccccccc
Confidence 456788999999999999887654 3699999999976432 112222357889765 56666655443
Q ss_pred --------EEEEcCccccCCCccceeecc--cccCeEEEEeCCCCCEEEEEeCCC-----cEEEEEcccccCCcccccCc
Q 022074 106 --------CKVWDRRCLNVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQ-----AIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 106 --------v~lWd~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~D~-----~v~lWdl~~~~~~~~~~~~~ 170 (303)
|++|++...... ....+.. +...+..+.++++|++|+..+.++ .|++||+...... +
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~--~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~---- 308 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSA--DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG--P---- 308 (741)
T ss_dssp --CCCCCEEEEEETTSCGGG--CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC--C----
T ss_pred ccCCCCCEEEEEECCCCchh--CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc--c----
Confidence 888887422111 1122222 223477889999999988777544 7888887532000 0
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC----CCeEEEEECCCC--eE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----DSCVYVYDLVSG--EQ 244 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~----dg~i~iwd~~~~--~~ 244 (303)
...+..+.... ..+ ++++++.|+..+. ++.|++||+.++ +.
T Consensus 309 --------------------------~~~l~~~~~~~------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~ 355 (741)
T 1yr2_A 309 --------------------------VTALIPDLKAQ------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRF 355 (741)
T ss_dssp --------------------------CEEEECSSSSC------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEE
T ss_pred --------------------------cEEecCCCCce------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcccc
Confidence 00000000000 011 1245666666554 456999999874 33
Q ss_pred EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 245 VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 245 ~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
...+..+...+.+++|+ ++.++++...|+..++|.+.
T Consensus 356 ~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 356 DTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred EEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 33344555567788887 66789999999998888654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-08 Score=86.63 Aligned_cols=197 Identities=12% Similarity=0.110 Sum_probs=121.7
Q ss_pred cccceEEEEEcCCCCEEEEeeCC----CeEEEEECCCCceEEEEe--cccCCeEEEEEccCCCcEEEEecC------CCe
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSD------DNL 105 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~D----g~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~------dg~ 105 (303)
+...+.+++++++|+.+++...+ +.|.+||.+++.....+. .+...+..+++.+ +++++++... .+.
T Consensus 85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~ 163 (333)
T 2dg1_A 85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGG 163 (333)
T ss_dssp SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEE
T ss_pred CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCce
Confidence 45679999999999977776666 689999998877543332 2345688999965 5777776653 345
Q ss_pred EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCC
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPP 184 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (303)
|..+|... .. ...+..+......+.++++++.+ ++.+.++.|.+||++...... .. +...
T Consensus 164 l~~~~~~~----~~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~------~~--~~~~------ 224 (333)
T 2dg1_A 164 VYYVSPDF----RT-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI------QP--FGAT------ 224 (333)
T ss_dssp EEEECTTS----CC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE------EE--EEEE------
T ss_pred EEEEeCCC----CE-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCc------cc--ccce------
Confidence 65565421 11 22222333457788899999855 555668899999985310000 00 0000
Q ss_pred CCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CeEEE
Q 022074 185 QARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS------PVRDC 258 (303)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~------~I~~v 258 (303)
....+.++.. .....+++++.++++...++.|.+||. +++.+..+..+.. .+.++
T Consensus 225 -----------~~~~~~~~~~-------~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~ 285 (333)
T 2dg1_A 225 -----------IPYYFTGHEG-------PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP 285 (333)
T ss_dssp -----------EEEECCSSSE-------EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE
T ss_pred -----------EEEecCCCCC-------CCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceE
Confidence 0000000000 011235678888888778899999998 5666666654433 68999
Q ss_pred EECCCCCeEEEEeCC
Q 022074 259 SWHPSQPMLVSSSWD 273 (303)
Q Consensus 259 ~~sp~~~~las~s~D 273 (303)
+|+||++.|..++.+
T Consensus 286 ~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 286 QFIPGTNQLIICSND 300 (333)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEeCc
Confidence 999998766544444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-09 Score=89.32 Aligned_cols=205 Identities=10% Similarity=-0.005 Sum_probs=135.4
Q ss_pred hhhccccccccccCcCcccccCCCcc-cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-CCeEEEEEcc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-SDVNTVCFGD 91 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-~~v~~l~~~~ 91 (303)
+.+..+.+++.-+|...-.. ..+. ..+.++.++|+|+.++ +.++.|+.||. +++..-++..+. ..+..+.+.+
T Consensus 12 ~~~~~v~~~d~~tG~~~w~~--~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~ 86 (276)
T 3no2_A 12 SGWNKIAIINKDTKEIVWEY--PLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILP 86 (276)
T ss_dssp TTCSEEEEEETTTTEEEEEE--ECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECT
T ss_pred CCCCEEEEEECCCCeEEEEe--CCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECC
Confidence 44567777777666633111 1122 3578899999999888 45778999999 777766666542 4677778854
Q ss_pred CCCcEEEEecC-CCeEEEEcCccccCCCccceee------cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 92 ESGHLIYSGSD-DNLCKVWDRRCLNVKGKPAGVL------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 92 ~~~~~l~s~s~-dg~v~lWd~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+++.+++.+. ++.|..+|.. ++.+..+ .++......++..++|+++++...++.|..||.. .+.
T Consensus 87 -dG~~lv~~~~~~~~v~~vd~~-----Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~-- 157 (276)
T 3no2_A 87 -DGNALVAWCGHPSTILEVNMK-----GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL-- 157 (276)
T ss_dssp -TSCEEEEEESTTEEEEEECTT-----SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE--
T ss_pred -CCCEEEEecCCCCEEEEEeCC-----CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE--
Confidence 5788888776 7777777642 2222111 1122233445678899999999999999999975 322
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
.|.+. .... .+.....+++.++++++.+++|..+|..+|+.
T Consensus 158 ---------~w~~~-----------------------~~~~-------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 158 ---------LNSVK-----------------------LSGT-------PFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ---------EEEEE-----------------------CSSC-------CCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ---------EEEEE-----------------------CCCC-------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 11111 0000 00112346788888888888999999999999
Q ss_pred EEEeecCC------CCeEEEEECCCCCeEEEEe
Q 022074 245 VAALKYHT------SPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 245 ~~~~~~h~------~~I~~v~~sp~~~~las~s 271 (303)
+-++..+. ..+..++..++|+++++..
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 88876432 2378999999999888874
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=103.51 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=137.3
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCe----------------EEEEECCCCceE--EEEe
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC----------------IYVYDLEANKLS--LRIL 78 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~----------------v~lwd~~~~~~~--~~~~ 78 (303)
+-+.|+++-+|.... + .-....+.+++|+|||+.|+.++.++. |++|++.+++.. ....
T Consensus 151 ~~i~v~d~~tg~~~~--~-~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~ 227 (710)
T 2xdw_A 151 VTIKFMKVDGAKELP--D-VLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE 227 (710)
T ss_dssp EEEEEEETTTTEEEE--E-EEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC
T ss_pred EEEEEEECCCCCCCc--c-cccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec
Confidence 356666665544221 1 111123667999999999999988876 999999887632 2222
Q ss_pred c--ccCCeEEEEEccCCCcEEEEecC-----CCeEEEEcCcccc--CCC-ccceeecccccCeEEEEeCCCCCEEEEEeC
Q 022074 79 A--HTSDVNTVCFGDESGHLIYSGSD-----DNLCKVWDRRCLN--VKG-KPAGVLMGHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 79 ~--h~~~v~~l~~~~~~~~~l~s~s~-----dg~v~lWd~~~~~--~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
. |...+..+.|+++ ++.|+.++. +..|++||+.... ..+ .....+..+.+.+.. .++++|..|+..+.
T Consensus 228 ~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 228 FPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTN 305 (710)
T ss_dssp CTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEEC
T ss_pred cCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEEC
Confidence 2 4455778899764 666665543 5689999975300 001 123445556665554 36678877765554
Q ss_pred C----CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeE
Q 022074 149 D----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224 (303)
Q Consensus 149 D----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 224 (303)
+ ..|.+||+...... . ...+..+.... .+ ....+++++.+
T Consensus 306 ~~~~~~~l~~~d~~~~~~~----------~----------------------~~~l~~~~~~~-~~---~~~~~~~~~~l 349 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEES----------K----------------------WKVLVPEHEKD-VL---EWVACVRSNFL 349 (710)
T ss_dssp TTCTTCEEEEEETTSCCGG----------G----------------------CEEEECCCSSC-EE---EEEEEETTTEE
T ss_pred CCCCCCEEEEEeCCCCCcc----------c----------------------ceeccCCCCCC-eE---EEEEEEcCCEE
Confidence 3 35888887532100 0 00000010000 00 01224457788
Q ss_pred EEEEeCCCe--EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE-EEe---CCCCEEEeecCCC
Q 022074 225 IYTGSHDSC--VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV-SSS---WDGDVVRWEFPGN 284 (303)
Q Consensus 225 latg~~dg~--i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la-s~s---~Dg~i~~Wd~~~~ 284 (303)
++++..|+. |++||+.+++.+..+..+...+..++++|+++.++ +.+ ..+++..||+...
T Consensus 350 v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 350 VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 888988884 66678767887777877888899999999997555 322 3478999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-09 Score=94.39 Aligned_cols=212 Identities=15% Similarity=0.088 Sum_probs=121.7
Q ss_pred cceEEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 40 FGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~--Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.....++++|||++|+++.. +++|.+||+.+++....+..+.+ ...+.+.|.....+++.+.||.+.+|+... .
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~---~ 183 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE---D 183 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT---T
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC---C
Confidence 34567899999999999874 67899999999987655133322 222444465556788888999999888642 1
Q ss_pred Cccc------eeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc--c--------c-----ccCccceeee
Q 022074 118 GKPA------GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA--S--------C-----NLGFRSYEWD 176 (303)
Q Consensus 118 ~~~~------~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~--~--------~-----~~~~~~~~~~ 176 (303)
++.. ..+..+...+ .+.+.+++..++..+.++.+.++|+....... . . ..+.+.+.+.
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 1111 0111111111 22234556666666778888888875321100 0 0 0000001111
Q ss_pred c----eeeeCCCCCc---------c---ccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC
Q 022074 177 Y----RWMDYPPQAR---------D---LKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV 240 (303)
Q Consensus 177 ~----~~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~ 240 (303)
. .+....++.. . +-....+.+..+..+. .....|+|++++|++++. +.|.+||..
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--------p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--------ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--------CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--------eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 1 0111110000 0 0001111222222221 233457899999998887 999999999
Q ss_pred CC--eEEEEeecCCCCeEEEEECCCCC
Q 022074 241 SG--EQVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 241 ~~--~~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
++ +.+..+..+......++++|+|+
T Consensus 334 t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99 98888766777889999999986
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-09 Score=91.37 Aligned_cols=182 Identities=12% Similarity=0.205 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCEEEEeeCC---------------------------CeEEEEECCCCceEEEEecccCCeEEEEEccCCC
Q 022074 42 IFSLKFSTDGRELVAGSSD---------------------------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 94 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~D---------------------------g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 94 (303)
+.++.|+|||+.|+.++.+ ..|++||+.+++....+.. . .+..+.|+|+ +
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spd-g 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRD-K 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETT-E
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCC-e
Confidence 8899999999998888743 5799999998876344444 3 7888999764 5
Q ss_pred cEEEEecCCC-------eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCC--------cEEEEEccc
Q 022074 95 HLIYSGSDDN-------LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ--------AIKLWDIRK 159 (303)
Q Consensus 95 ~~l~s~s~dg-------~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~--------~v~lWdl~~ 159 (303)
++++++.++ ...+|... .+. ...+..+ ..+..+ +|+|++|+..+.+. .|.+|| ..
T Consensus 183 -~~~~~~~~~~~~~~~~~~~l~~~d----~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~ 252 (347)
T 2gop_A 183 -IVVNVPHREIIPQYFKFWDIYIWE----DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GK 252 (347)
T ss_dssp -EEEEEECCCSSCCSSCCEEEEEEE----TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SS
T ss_pred -EEEEEecccccccccccccEEEeC----CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CC
Confidence 777775542 44565543 122 2233334 444444 78999888777543 455555 11
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.. . . + ..++.. .+. ..+.|+ ++ ++++++.++.+++| +
T Consensus 253 -~~--~-~---------------------l----------~~~~~~---~~~--~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 253 -EV--M-G---------------------I----------LDEVDR---GVG--QAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp -CE--E-E---------------------S----------STTCCS---EEE--EEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred -ce--E-e---------------------c----------cccCCc---ccC--CccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 00 0 0 0 000000 000 013467 77 88999999999999 8
Q ss_pred CCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE-EEeecC
Q 022074 240 VSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV-VRWEFP 282 (303)
Q Consensus 240 ~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i-~~Wd~~ 282 (303)
.+++... +..+...|.+++|+| .++++++.++.. .+|.+.
T Consensus 290 ~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 290 WDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 7666543 334577899999999 677777777765 788765
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-08 Score=85.41 Aligned_cols=204 Identities=12% Similarity=0.137 Sum_probs=127.8
Q ss_pred CcccceEEEEEcCC-CCEEEEeeCCCeEEEEECCCCceEEEE-ec-----ccCCeEEEEEccCCCcEEEEecCC------
Q 022074 37 GYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRI-LA-----HTSDVNTVCFGDESGHLIYSGSDD------ 103 (303)
Q Consensus 37 ~~~~~v~~l~~s~~-g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~-----h~~~v~~l~~~~~~~~~l~s~s~d------ 103 (303)
|+...+.++.++++ |+.++ ++.++.|.+||.+ ++.. .+ .. ....+..+++.+ +++++++...+
T Consensus 68 ~~~~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~ 143 (314)
T 1pjx_A 68 GYGGIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFE-EIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPAD 143 (314)
T ss_dssp TEECCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEE-ECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSC
T ss_pred CCCCCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEE-EEEeccCCCccccCCcCEEECC-CCCEEEEecCccccccc
Confidence 46677999999999 65444 4444479999998 6543 23 21 113478899864 57777776554
Q ss_pred ---------CeEEEEcCccccCCCccceeecccccCeEEEEeC----CCCCEE-EEEeCCCcEEEEEcccccCCcccccC
Q 022074 104 ---------NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR----GDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 104 ---------g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+.|..||.. ++ ...+..+......+.++ ++++.+ ++...++.|.+||+.... ..
T Consensus 144 ~~~~~~~~~~~l~~~~~~-----g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g---~~--- 211 (314)
T 1pjx_A 144 YTRSMQEKFGSIYCFTTD-----GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA---KI--- 211 (314)
T ss_dssp CCBTTSSSCEEEEEECTT-----SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT---EE---
T ss_pred ccccccCCCCeEEEECCC-----CC-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC---cc---
Confidence 566667642 11 12222333445677788 888655 555678999999975210 00
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
.... . ...+.++.. .......+++++.++++...++.|.+||..+++.+..+.
T Consensus 212 -~~~~---~------------------~~~~~~~~~-----~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 212 -ENKK---V------------------WGHIPGTHE-----GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp -EEEE---E------------------EEECCCCSS-----CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred -ccce---E------------------EEECCCCCC-----CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence 0000 0 000000000 000112356788888888788999999998787766777
Q ss_pred cCCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 250 YHTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 250 ~h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
.+...+.+++|+|+++ ++++...++.|..|++..
T Consensus 265 ~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 265 CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 7777899999999999 556666678999999764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-08 Score=87.15 Aligned_cols=192 Identities=11% Similarity=0.009 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
...+.+. +++..++...++.|.+||..+++...++. .......++++++ ++++++...++.|.+||.... +..
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~----~~~ 118 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTY----EIT 118 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTT----EEE
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCC----eEE
Confidence 5667774 34455555567899999999998877664 3466788888654 566655558999999997532 222
Q ss_pred eeecccc-----cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 122 GVLMGHL-----EGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 122 ~~~~~h~-----~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
..+.... .....+.+ .++.++++.. .++.|.++|+......... ...
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--------------~~g------------ 171 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--------------TIG------------ 171 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE--------------ECS------------
T ss_pred EEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE--------------EcC------------
Confidence 2221111 12334444 3444444543 4899999998643211000 000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC----------CeEEEEECCCCeEEEEeecC-CCCeEEEEECCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD----------SCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQ 264 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d----------g~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~ 264 (303)
.. .....++++++++++...+ +.|.++|..+++....+... ......++|+|++
T Consensus 172 -------~~--------p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 172 -------IQ--------PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp -------SC--------BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred -------CC--------ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 00 0012256778877776554 89999999999877666533 2368999999999
Q ss_pred CeEEEEeCCCCEEEeecCCC
Q 022074 265 PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 265 ~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.|..+.. .+.+||....
T Consensus 237 ~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp CEEEEESS--SEEEEETTCS
T ss_pred CEEEEEcc--EEEEEECCCC
Confidence 98877754 8999998654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-09 Score=100.48 Aligned_cols=225 Identities=11% Similarity=0.025 Sum_probs=133.8
Q ss_pred chhhccccccccccCcCcccccC-CCcccceEEEEEcCCCCEEEEeeCCCe-------------EEEEECCCCce--EEE
Q 022074 13 GTMESLANVTEIHDGLDFSAADD-GGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKL--SLR 76 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~g~~l~sgs~Dg~-------------v~lwd~~~~~~--~~~ 76 (303)
|+-++-+.|++.-+|... ..+. .+. ....++|+|||+.|+.++.|.. |++|++.++.. ...
T Consensus 143 G~~~~~i~v~dl~tg~~~-~~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv 219 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWS-KVDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVV 219 (695)
T ss_dssp TCSCCEEEEEETTTCCBC-SSCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEE
T ss_pred CCceEEEEEEECCCCCCc-CCcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEE
Confidence 333456777777665432 0111 111 1267899999999999998876 99999988762 122
Q ss_pred E--ecccCCeEEEEEccCCCcEEEEecCCC----eEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe---
Q 022074 77 I--LAHTSDVNTVCFGDESGHLIYSGSDDN----LCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG--- 147 (303)
Q Consensus 77 ~--~~h~~~v~~l~~~~~~~~~l~s~s~dg----~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--- 147 (303)
. ..|...+..+.|+++ +++++.++.++ .|++||.. .+ ....+..+.+.+....+ ++|.+++...
T Consensus 220 ~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~l~~~~~~----~~-~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~ 292 (695)
T 2bkl_A 220 HERTGDPTTFLQSDLSRD-GKYLFVYILRGWSENDVYWKRPG----EK-DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGA 292 (695)
T ss_dssp ECCCCCTTCEEEEEECTT-SCCEEEEEEETTTEEEEEEECTT----CS-SCEEEEECSSCCEEEEE-ETTEEEEEECTTC
T ss_pred EecCCCCEEEEEEEECCC-CCEEEEEEeCCCCceEEEEEcCC----CC-ceEEeecCCCceEEEEe-cCCcEEEEECCCC
Confidence 2 234457888999765 66666655544 66666532 12 23344455555555444 4555444444
Q ss_pred CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEE
Q 022074 148 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT 227 (303)
Q Consensus 148 ~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat 227 (303)
.++.|.+||+...... .| ..+..+.....+. ...++ +++++++
T Consensus 293 ~~~~l~~~d~~~~~~~----------~~----------------------~~l~~~~~~~~l~----~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARA----------SW----------------------KEIVPEDSSASLL----SVSIV-GGHLSLE 335 (695)
T ss_dssp TTCEEEEEBTTBCSGG----------GC----------------------EEEECCCSSCEEE----EEEEE-TTEEEEE
T ss_pred CCCEEEEEeCCCCCcc----------CC----------------------eEEecCCCCCeEE----EEEEE-CCEEEEE
Confidence 2578888887532100 00 0000000000000 11233 5788999
Q ss_pred EeCCCeEEEEECC-CCeEEEEeecC-CCCeEEEEECCCCCeEE----EEeCCCCEEEeecCCC
Q 022074 228 GSHDSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLV----SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 228 g~~dg~i~iwd~~-~~~~~~~~~~h-~~~I~~v~~sp~~~~la----s~s~Dg~i~~Wd~~~~ 284 (303)
...|+..++|... +++.+..+..+ ...+..++++|+++.|+ +....+++.+||+...
T Consensus 336 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 336 YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9999998888664 45656666655 66788999999998666 3334578999998653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-08 Score=84.43 Aligned_cols=196 Identities=9% Similarity=0.031 Sum_probs=120.3
Q ss_pred eEEEEEcCCCCEEEE-------eeCCCeEEEEECCCCceEEEEe----cccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 42 IFSLKFSTDGRELVA-------GSSDDCIYVYDLEANKLSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 42 v~~l~~s~~g~~l~s-------gs~Dg~v~lwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
..+++|+++|+.+++ +..++.|.+||..+++...... ++...+..+++.++.++++++.. ...|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEe
Confidence 578999999987777 6778999999988877543221 14467888998643265555554 44788898
Q ss_pred CccccCCCcc-ceeecc-cccCeEEEEeCCCCCEEEEEeCC---------------CcEEEEEcccccCCcccccCccce
Q 022074 111 RRCLNVKGKP-AGVLMG-HLEGITFIDSRGDGRYLISNGKD---------------QAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 111 ~~~~~~~~~~-~~~~~~-h~~~v~~~~~~~~~~~l~s~~~D---------------~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
.. .... .. .....+ ....+..+.+.++|+++++...+ +.|..||.. .. .
T Consensus 99 ~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~----~------- 164 (314)
T 1pjx_A 99 TD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ----M------- 164 (314)
T ss_dssp TT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC----E-------
T ss_pred CC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC----E-------
Confidence 64 2111 00 000111 12347788899999888777654 334444321 00 0
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeee----CCCeEE-EEEeCCCeEEEEECC-CCe----
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS----TGQKYI-YTGSHDSCVYVYDLV-SGE---- 243 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l-atg~~dg~i~iwd~~-~~~---- 243 (303)
........ ......++ ++++.+ ++...++.|++||.. +++
T Consensus 165 -----------------------~~~~~~~~-------~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 165 -----------------------IQVDTAFQ-------FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp -----------------------EEEEEEES-------SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred -----------------------EEeccCCC-------CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 00000000 00112356 777655 444578999999976 454
Q ss_pred -EEEEeecCC-CCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 244 -QVAALKYHT-SPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 244 -~~~~~~~h~-~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
....+..+. ..+..++++++|+++++...++.|.+||..
T Consensus 215 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 215 KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 223333443 568899999999999988888999999976
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-08 Score=90.51 Aligned_cols=220 Identities=16% Similarity=0.131 Sum_probs=135.6
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECC--CCceEEEEecccCCeEEEEEcc--
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE--ANKLSLRILAHTSDVNTVCFGD-- 91 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~--~~~~~~~~~~h~~~v~~l~~~~-- 91 (303)
++.+.|++.-+|.-. .....|. .+..+.|+|||+++++++.|+.|.+||+. +.+...++.. ......+++++
T Consensus 176 ~~~V~viD~~t~~v~-~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~~ia~s~~~ 251 (567)
T 1qks_A 176 AGQIALIDGSTYEIK-TVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKME 251 (567)
T ss_dssp TTEEEEEETTTCCEE-EEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEEEEEECCST
T ss_pred CCeEEEEECCCCeEE-EEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCceeEEcccc
Confidence 345556665444322 2222332 46689999999999999999999999996 7766665554 33467889974
Q ss_pred -CCCcEEEEec-CCCeEEEEcCccccCCCccceeec----------cccc-CeEEEEeCCCCCE-EEEEeCCCcEEEEEc
Q 022074 92 -ESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLM----------GHLE-GITFIDSRGDGRY-LISNGKDQAIKLWDI 157 (303)
Q Consensus 92 -~~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~----------~h~~-~v~~~~~~~~~~~-l~s~~~D~~v~lWdl 157 (303)
++++++++++ .+++|.++|.... +++..+. .|.+ .+..+..++++.. +++...++.|.++|.
T Consensus 252 ~pDGk~l~v~n~~~~~v~ViD~~t~----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 252 GWEDKYAIAGAYWPPQYVIMDGETL----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TCTTTEEEEEEEETTEEEEEETTTC----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred CCCCCEEEEEEccCCeEEEEECCCC----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 4576666554 5689999997532 2222221 1333 4667777776555 455556789999987
Q ss_pred ccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEE
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYV 236 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~i 236 (303)
...... .+..+..... .....|++++++++++. .++.|.+
T Consensus 328 ~~~~~~--------------------------------~v~~i~~~~~-------~~d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 328 TDLNNL--------------------------------KTTEISAERF-------LHDGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp TCSSEE--------------------------------EEEEEECCSS-------EEEEEECTTSCEEEEEEGGGTEEEE
T ss_pred CCCccc--------------------------------eeeeeecccc-------ccCceECCCCCEEEEEeCCCCeEEE
Confidence 532100 0000000000 00123678888876654 6899999
Q ss_pred EECCCCeEEEEeec-----CCCCeEEEEECCC-CCeEEEEe-CCCCEEEeecCC
Q 022074 237 YDLVSGEQVAALKY-----HTSPVRDCSWHPS-QPMLVSSS-WDGDVVRWEFPG 283 (303)
Q Consensus 237 wd~~~~~~~~~~~~-----h~~~I~~v~~sp~-~~~las~s-~Dg~i~~Wd~~~ 283 (303)
+|..+++.+..+.. |.+.-..+ ++|+ +++.+++. .+++|.++|...
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred EECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 99999988776654 32212122 5887 45555553 468999999764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=89.26 Aligned_cols=215 Identities=10% Similarity=0.028 Sum_probs=131.9
Q ss_pred ccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEeccc-----CCeEEEEEc
Q 022074 17 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFG 90 (303)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~-----~~v~~l~~~ 90 (303)
..+.|++.-+|.....+ . .......+++++++ .++++. .++.|.+||+.+++....+.... .....+++
T Consensus 64 ~~v~viD~~t~~~~~~i-~--~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~- 138 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRI-T--GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ- 138 (328)
T ss_dssp TEEEEEETTTCCEEEEE-E--CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-
T ss_pred CEEEEEECcccEEEEEc-C--CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-
Confidence 44566666555432112 1 12457889998888 455555 89999999999998765554322 14556666
Q ss_pred cCCCcEEEEec-CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC----------CcEEEEEccc
Q 022074 91 DESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----------QAIKLWDIRK 159 (303)
Q Consensus 91 ~~~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D----------~~v~lWdl~~ 159 (303)
+.+.++++.. .+++|.++|.... +....+.. ......+.+.++|++++++..+ +.|.++|...
T Consensus 139 -~~~~lyv~~~~~~~~v~viD~~t~----~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t 212 (328)
T 3dsm_A 139 -YGKYVYVNCWSYQNRILKIDTETD----KVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET 212 (328)
T ss_dssp -ETTEEEEEECTTCCEEEEEETTTT----EEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred -ECCEEEEEcCCCCCEEEEEECCCC----eEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC
Confidence 2355555544 4889999997532 22222221 1234466778889877776654 7899998753
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+.... ...+. +. ......++|+++.|..+.. .|++||.
T Consensus 213 ~~v~~~--------------~~~~~-----------------g~--------~p~~la~~~d~~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 213 FTVEKQ--------------FKFKL-----------------GD--------WPSEVQLNGTRDTLYWINN--DIWRMPV 251 (328)
T ss_dssp TEEEEE--------------EECCT-----------------TC--------CCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred CeEEEE--------------EecCC-----------------CC--------CceeEEEecCCCEEEEEcc--EEEEEEC
Confidence 221000 00000 00 0112346788888877755 8999999
Q ss_pred CCCeEEE-E-eecCCCCeEEEEECC-CCCeEEEE----eCCCCEEEeecCC
Q 022074 240 VSGEQVA-A-LKYHTSPVRDCSWHP-SQPMLVSS----SWDGDVVRWEFPG 283 (303)
Q Consensus 240 ~~~~~~~-~-~~~h~~~I~~v~~sp-~~~~las~----s~Dg~i~~Wd~~~ 283 (303)
.+++... . +..+......++++| +++++++. ..++.|.+||..+
T Consensus 252 ~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 252 EADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp TCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred CCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence 8877532 1 122245789999999 56677776 6789999999763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-08 Score=82.51 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=84.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe--cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
++...+.+++++++|+.+++...++.|++||.. ++....+. .+...+..+++.+ +++++++...++.|++||..
T Consensus 118 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-- 193 (286)
T 1q7f_A 118 TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-- 193 (286)
T ss_dssp TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT--
T ss_pred ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC--
Confidence 344568999999999988877788999999965 44443333 3445688999965 57788887889999999963
Q ss_pred cCCCccceeecc--cccCeEEEEeCCCCCEEEEEeCCC-cEEEEEc
Q 022074 115 NVKGKPAGVLMG--HLEGITFIDSRGDGRYLISNGKDQ-AIKLWDI 157 (303)
Q Consensus 115 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~D~-~v~lWdl 157 (303)
+.....+.. +......++++++|+++++...++ .|++||.
T Consensus 194 ---g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 194 ---GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 236 (286)
T ss_dssp ---CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred ---CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence 222333322 235678899999999888888886 9999985
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=97.86 Aligned_cols=202 Identities=15% Similarity=0.120 Sum_probs=118.4
Q ss_pred CcccceEEEEEcCCCCEEEE-----eeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC-------
Q 022074 37 GYSFGIFSLKFSTDGRELVA-----GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN------- 104 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~s-----gs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg------- 104 (303)
+|...+..++|||||++|+- |+.+.+|++||+.+++..... -+......++|+ + ++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-G-NEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-T-TTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-C-CCEEEEEEecCccccccc
Confidence 46678999999999998884 333357999999999854321 111112567897 4 56666666553
Q ss_pred ------eEEEEcCccccCCCccceeec--c-cccCeEEEEeCCCCCEEEEEe-C---CCcEEEEEcccccCCcccccCcc
Q 022074 105 ------LCKVWDRRCLNVKGKPAGVLM--G-HLEGITFIDSRGDGRYLISNG-K---DQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 105 ------~v~lWd~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~~-~---D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
.|++|++.... ......+. . |...+..+.++++|++|+... . +..+.++|+.......
T Consensus 203 ~~~~~~~v~~~~lgt~~--~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~------- 273 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQ--EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL------- 273 (693)
T ss_dssp --CCCCEEEEEETTSCG--GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC-------
T ss_pred ccCCCcEEEEEECCCCc--ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce-------
Confidence 48999875221 11122222 2 333467788999999875433 2 2578888875421100
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC---CCeEEEEECCCCeE--EE
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---DSCVYVYDLVSGEQ--VA 246 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~---dg~i~iwd~~~~~~--~~ 246 (303)
..+..+.... ..+..+.++++++.... .+.|..+|+.+++. ..
T Consensus 274 --------------------------~~l~~~~~~~------~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 274 --------------------------LTVQGDLDAD------VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp --------------------------EEEECSSSSC------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred --------------------------EEEeCCCCce------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 0000000000 01111223444445444 36899999987653 34
Q ss_pred EeecCCCCeEEEEECCCCCeEEEEeCCC---CEEEeecCCC
Q 022074 247 ALKYHTSPVRDCSWHPSQPMLVSSSWDG---DVVRWEFPGN 284 (303)
Q Consensus 247 ~~~~h~~~I~~v~~sp~~~~las~s~Dg---~i~~Wd~~~~ 284 (303)
.+..|...+. .|+++++.|+....++ .|++|++.+.
T Consensus 322 ~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 322 DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 4555665555 9999999777665544 6888887643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-07 Score=78.55 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=131.9
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
++...+.++.++++|+..++...++.|.+||.. +...... ..+...+..+++.+ +++++++...++.|..||..
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~--- 86 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK--- 86 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT---
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC---
Confidence 344568999999999977766668899999988 5543222 23456788898854 57788777778899999853
Q ss_pred CCCccceeec--ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 116 VKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 116 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
+. ...+. .....+..+.+.+++.++++...++.|..||... ... .+ ..+. .
T Consensus 87 --g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g-~~~----------~~-----~~~~--------~ 139 (299)
T 2z2n_A 87 --GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDG-KIR----------EY-----ELPN--------K 139 (299)
T ss_dssp --SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEE----------EE-----ECSS--------T
T ss_pred --Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCC-CEE----------Ee-----cCCC--------C
Confidence 11 11121 2344678888999998888887888999998621 100 00 0000 0
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCeEEEEECCCCCeEEEEeC
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~-~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
. .. .....+.+++++.++...++.|..||. +++.... +..+...+..+++++++++.++...
T Consensus 140 ~---------~~-------~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 202 (299)
T 2z2n_A 140 G---------SY-------PSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII 202 (299)
T ss_dssp T---------CC-------EEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred C---------CC-------CceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC
Confidence 0 00 011224567887777777889999998 6665432 3334557899999999998888777
Q ss_pred CCCEEEeec
Q 022074 273 DGDVVRWEF 281 (303)
Q Consensus 273 Dg~i~~Wd~ 281 (303)
++.|.+|+.
T Consensus 203 ~~~i~~~~~ 211 (299)
T 2z2n_A 203 GNKIGRITT 211 (299)
T ss_dssp TTEEEEECT
T ss_pred CceEEEECC
Confidence 889999997
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-07 Score=83.77 Aligned_cols=236 Identities=9% Similarity=0.064 Sum_probs=134.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCC--eEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg--~v~lWd~~~~~~~~ 118 (303)
....|+|+++|+.+++...++.|++||+.++........ ..... ++|.+ +++.|+.+..++ .|.+++..... ..
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~-~~ 207 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGW-AP 207 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTT-CE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCc-ee
Confidence 577899999999777777788999999998876543333 22333 88865 466777777655 78888854211 00
Q ss_pred ccceee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc-cceeeece-eeeCCCC-CccccC-CC
Q 022074 119 KPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF-RSYEWDYR-WMDYPPQ-ARDLKH-PC 193 (303)
Q Consensus 119 ~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~-~~ 193 (303)
.....+ .........+++++++..|+.+..++.|+.||+............. ....+... .+.+.+. ...+.. ..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 011111 1133456778888854455557778899999976422100000000 00000000 1222221 111100 00
Q ss_pred CCcceEEecccceeee------------------EEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEeecC---
Q 022074 194 DQSVATYKGHSVLRTL------------------IRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH--- 251 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~h--- 251 (303)
...+..++........ +.......+++++.++++.. .+++|+.||..+++. ..+.++
T Consensus 288 ~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~ 366 (409)
T 3hrp_A 288 LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVDV 366 (409)
T ss_dssp TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTTC
T ss_pred CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCCC
Confidence 1112222111100000 00112234678898888888 899999999877774 444444
Q ss_pred ------------CCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 252 ------------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 252 ------------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
-.....++++|++.++++-..++.|+.+++
T Consensus 367 ~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 367 ASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp BSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246899999999999999888888888764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-07 Score=77.09 Aligned_cols=196 Identities=12% Similarity=0.049 Sum_probs=129.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
...+.+++++++|+..++...++.|..||.. ++... .+......+..+++.+ +++++++...++.|..||.. .
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-g--- 129 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDD-G--- 129 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-C---
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCC-C---
Confidence 4568899999999987777778889999986 33321 1122445788888864 57788877778899999852 1
Q ss_pred Cccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
.... ....+...+..+.+.++++++++...++.|..||. ..... .+ ..+. .
T Consensus 130 -~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~----------~~-----~~~~---------~-- 181 (299)
T 2z2n_A 130 -KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT----------EF-----KIPT---------P-- 181 (299)
T ss_dssp -CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE----------EE-----ECSS---------T--
T ss_pred -CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE----------Ee-----eCCC---------C--
Confidence 1111 11223346788889999988887777889999986 21100 00 0000 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
... .....+.+++.+.++...++.|.+||. +++... .+..+...+.+++++++++++++...++.
T Consensus 182 ------~~~-------~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 182 ------ASG-------PVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp ------TCC-------EEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred ------CCc-------ceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce
Confidence 000 001224567787777777889999999 666432 23334567999999999998887767889
Q ss_pred EEEeecC
Q 022074 276 VVRWEFP 282 (303)
Q Consensus 276 i~~Wd~~ 282 (303)
|..||..
T Consensus 248 i~~~d~~ 254 (299)
T 2z2n_A 248 IGRLTSN 254 (299)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 9999963
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-07 Score=77.69 Aligned_cols=192 Identities=10% Similarity=0.092 Sum_probs=115.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc----cCCeEEEEEccCCCcEEEEecC---------CCeE
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDVNTVCFGDESGHLIYSGSD---------DNLC 106 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~s~---------dg~v 106 (303)
..+.+++++++|+.++ +. ++.|.+||.++++........ ...++.+++.+ +++++++... ...-
T Consensus 54 ~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 54 APVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp SCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCE
T ss_pred CceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCc
Confidence 4688999999999544 44 557999999888654322211 13467888864 5776665422 1223
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 185 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (303)
.+|.+.. .+. ...+..+....+.++++++++.| ++.+.++.|.+||+....-.... . +
T Consensus 131 ~l~~~d~---~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~----~------~------- 189 (297)
T 3g4e_A 131 ALYSLFP---DHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN----R------R------- 189 (297)
T ss_dssp EEEEECT---TSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE----E------E-------
T ss_pred EEEEEEC---CCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC----c------E-------
Confidence 4444321 112 22222333446788999999865 56667889999987421100000 0 0
Q ss_pred CccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC-CCC
Q 022074 186 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQ 264 (303)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s-p~~ 264 (303)
....+...... .....+.++|.+.++....+.|..||..+++.+..+..+...+++++|. |++
T Consensus 190 ----------~~~~~~~~~~~------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 190 ----------SVYKLEKEEQI------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp ----------EEEECCGGGCE------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGG
T ss_pred ----------EEEECCCCCCC------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCC
Confidence 00000000000 0012245778888887788999999999999988888887789999998 887
Q ss_pred CeE-EEEe
Q 022074 265 PML-VSSS 271 (303)
Q Consensus 265 ~~l-as~s 271 (303)
+.| +|..
T Consensus 254 ~~L~vt~~ 261 (297)
T 3g4e_A 254 SEMYVTCA 261 (297)
T ss_dssp CEEEEEEB
T ss_pred CEEEEEcC
Confidence 754 4443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-06 Score=74.35 Aligned_cols=234 Identities=9% Similarity=0.009 Sum_probs=136.9
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE-EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
......++.+.++|+..++...++.|.+||.. ++.... +..+...+..+++. ++++++++...++.|..+|.. ...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCe
Confidence 34568899999999977777678899999988 554321 22233568888885 457787777778899999864 211
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC-CC
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC-DQ 195 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (303)
. ..........+..+.+.+++.++++...++.|..+|... ... ...... . ......+...+......... ..
T Consensus 95 --~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~-~~~~~~-~-~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 95 --T-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-TIY-EYDLPN-K-GSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp --E-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-CEE-EEECSS-T-TCCEEEEEECTTSSEEEEETTTT
T ss_pred --E-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-CEE-EccCCC-C-CCCceeEEECCCCCEEEEecCCC
Confidence 1 111112335678888889998888887788999998752 111 000000 0 00001111222222111110 11
Q ss_pred cceEEecccceeeeE-----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCCCCeEEE
Q 022074 196 SVATYKGHSVLRTLI-----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~~~~las 269 (303)
.+..++......... .......+.+++.+.++....+.|.+||. +++... .+..+...+.++++++++++.++
T Consensus 168 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 168 SIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred eEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 222222111000000 00112235667877777667788999998 555433 23334567899999999998888
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
...++.|..++..
T Consensus 247 ~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 247 EWGANQIGRITND 259 (300)
T ss_dssp ETTTTEEEEECTT
T ss_pred ccCCCeEEEECCC
Confidence 7777899999864
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=82.79 Aligned_cols=210 Identities=13% Similarity=0.034 Sum_probs=126.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeC-----CCeEEEEECCCCceEEEEec------ccCCeEEEEEccCCCcEEEEec---
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSS-----DDCIYVYDLEANKLSLRILA------HTSDVNTVCFGDESGHLIYSGS--- 101 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~-----Dg~v~lwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~~~l~s~s--- 101 (303)
.+|-..+.++.++++|+..++-.. ++.|.+||+++++....+.. +...++.+++.++.+..+++-.
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 467788999999999876555433 57899999999986554432 1235688888655566666665
Q ss_pred CCCeEEEEcCccccCCCccceeeccc-----------------------------ccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLMGH-----------------------------LEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~~h-----------------------------~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.++.|.+||..... ..+.+.+| ...+..++++++++.|+.+..++.
T Consensus 143 ~~~~i~v~d~~~g~----~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~- 217 (343)
T 2qe8_A 143 DKAALIRVDLQTGL----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST- 217 (343)
T ss_dssp GGCEEEEEETTTCC----EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-
T ss_pred CCCeEEEEECCCCC----EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-
Confidence 68899999975221 11111111 123577889999988877766553
Q ss_pred EEEEccc--ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC
Q 022074 153 KLWDIRK--MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 230 (303)
Q Consensus 153 ~lWdl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~ 230 (303)
++|.+.. .... . ..... +. ..+... ++.. ......++++|.++++...
T Consensus 218 ~l~~~~~~~~~~~-~--~~~~~----------------~~----~~~~~~-g~~g------~pdgia~d~~G~l~va~~~ 267 (343)
T 2qe8_A 218 SMYRIKSADLSNL-Q--LTDAE----------------LG----SKIERY-SEKP------ICDGISIDKDHNIYVGDLA 267 (343)
T ss_dssp EEEEEEHHHHTCT-T--CCHHH----------------HH----TTCEEE-EECC------SCSCEEECTTCCEEEEEGG
T ss_pred eEEEEEHHHhcCC-C--CChhh----------------hh----cceEec-ccCC------CCceEEECCCCCEEEEccC
Confidence 4554431 1100 0 00000 00 000000 0000 0001235678888899889
Q ss_pred CCeEEEEECCCCeEEEEeec-CCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 231 DSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~-h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
++.|.+||..+++....... +...+.+++|.++++++++.+..+.+.+|.
T Consensus 268 ~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 268 HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99999999866764333322 245689999999999888887665555554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-06 Score=78.02 Aligned_cols=248 Identities=9% Similarity=-0.078 Sum_probs=136.2
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceEEEEecc-------
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLSLRILAH------- 80 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~~~h------- 80 (303)
.+.|++.-+|.-. ...+.|.. + .+.++|||++++++. .++.|.+||..+.+....+.-.
T Consensus 48 ~v~v~D~~t~~~~-~~i~~g~~-p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDAGSGSIL-GHVNGGFL-P--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEECCCCeEE-EEecCCCC-C--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccccc
Confidence 4566666555422 33334432 3 899999999999986 3678999999987766544321
Q ss_pred cCCeEEEEEccCCCcEEEEecC--CCeEEEEcCccccCCCcccee-ecccccCeEEEEeCCCC-CEEEEEeCCCcEEEEE
Q 022074 81 TSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDG-RYLISNGKDQAIKLWD 156 (303)
Q Consensus 81 ~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~D~~v~lWd 156 (303)
......++++| ++++|+.+.. +.+|.++| ... +.... +.. ... +.+.+++ +.+++...|+.+.++|
T Consensus 124 g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~----~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd 193 (373)
T 2mad_H 124 GPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGG----SSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTD 193 (373)
T ss_pred CCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCC----CEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEE
Confidence 12345778875 4777776653 57899999 733 22322 211 111 2223333 4566777899999998
Q ss_pred cccccCCcccc-----cCccceeeeceeeeCCCCC-ccccCCCCCcceEEecccc----eeee-------------EEEe
Q 022074 157 IRKMSSNASCN-----LGFRSYEWDYRWMDYPPQA-RDLKHPCDQSVATYKGHSV----LRTL-------------IRCH 213 (303)
Q Consensus 157 l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~-------------~~~~ 213 (303)
+ ..+...... .+...+.. ...+.+.. ..+.......+..++-... .... ....
T Consensus 194 ~-~g~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 194 H-AGGAAGAGLVGAMLTAAQNLLT---QPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred C-CCcEEEEEeccccccCCcceee---cceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 8 432221100 00000000 00000000 0000000011111111000 0000 0000
Q ss_pred eeeeeeCCCeEEEEEeC----------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEe-CCCCEEEeec
Q 022074 214 FSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDGDVVRWEF 281 (303)
Q Consensus 214 ~~~~~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s-~Dg~i~~Wd~ 281 (303)
....++++++.+..+.. ++.|.++|..+++.+..+..- .....++|+||++ .++++. .++.+.++|.
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 01235677776666543 368999999999998888633 3689999999999 777777 5899999998
Q ss_pred CCC
Q 022074 282 PGN 284 (303)
Q Consensus 282 ~~~ 284 (303)
...
T Consensus 349 ~t~ 351 (373)
T 2mad_H 349 GAG 351 (373)
T ss_pred CCC
Confidence 754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-07 Score=81.79 Aligned_cols=267 Identities=13% Similarity=0.052 Sum_probs=143.9
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceE
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLS 74 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~ 74 (303)
+...+.++..|+..+.|.+.-++.-. .....|.. + . +.++|||+++++++ .++.|.+||..+.+..
T Consensus 47 vyV~~~~~~~~~~~V~ViD~~t~~v~-~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~ 122 (386)
T 3sjl_D 47 VYVNDPAHFAAVTQQFVIDGEAGRVI-GMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT 122 (386)
T ss_dssp EEEEECGGGCSSEEEEEEETTTTEEE-EEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred EEEEcCcccCCCCEEEEEECCCCeEE-EEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE
Confidence 34445555555666777766444422 33334544 3 4 99999999998876 3678999999999877
Q ss_pred EEEecc-------cCCeEEEEEccCCCcEEEEecC--CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEE
Q 022074 75 LRILAH-------TSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLIS 145 (303)
Q Consensus 75 ~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 145 (303)
.++.-. ......++++++ +++++.+.. +++|.++|+... +....+.-. ... ..+....+.+++
T Consensus 123 ~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~----~vv~tI~v~--g~~-~~~P~g~~~~~~ 194 (386)
T 3sjl_D 123 ADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVP--DCY-HIFPTAPDTFFM 194 (386)
T ss_dssp EEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTT----EEEEEEECC--SEE-EEEEEETTEEEE
T ss_pred EEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCC----cEEEEEECC--Ccc-eeecCCCceeEE
Confidence 665422 124567888764 666666643 689999998632 333333211 111 112223345667
Q ss_pred EeCCCcEEEEEccc-ccCCcccccCccce-eeeceeeeC-CCCCccccCCCCCcceEEecccceeeeE-EEe--------
Q 022074 146 NGKDQAIKLWDIRK-MSSNASCNLGFRSY-EWDYRWMDY-PPQARDLKHPCDQSVATYKGHSVLRTLI-RCH-------- 213 (303)
Q Consensus 146 ~~~D~~v~lWdl~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------- 213 (303)
.+.||++.+.++.. .+........+... ..-.....+ .+..+.+.......+..++......+.. +..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~ 274 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 274 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence 77777777777754 12100000000000 000000000 1122211122222233332211100000 000
Q ss_pred --e------eeeeeCCCeEEEEEeC----------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEE-EeCC
Q 022074 214 --F------SPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVS-SSWD 273 (303)
Q Consensus 214 --~------~~~~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las-~s~D 273 (303)
+ ...++++++.+..... .+.|.+.|.++++.+..+..- .+++.|+++||++ +|.+ ...+
T Consensus 275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~ 353 (386)
T 3sjl_D 275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGD 353 (386)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTT
T ss_pred ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCC
Confidence 0 1124566666665432 257999999999998887532 3789999999996 5555 4558
Q ss_pred CCEEEeecCCC
Q 022074 274 GDVVRWEFPGN 284 (303)
Q Consensus 274 g~i~~Wd~~~~ 284 (303)
+.+.++|....
T Consensus 354 ~~VsViD~~t~ 364 (386)
T 3sjl_D 354 KTLYIHDAESG 364 (386)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 99999997654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-09 Score=97.64 Aligned_cols=182 Identities=12% Similarity=0.035 Sum_probs=99.1
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
++..+++++.||.|+.||..+|+..-++.. +.+.+..+.. ++.++++++.|+.|+.||.+..+ ..-.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~----~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNE----GLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----C----CSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCc----eeeeeeccCc
Confidence 578899999999999999999987765554 3444433332 35677788899999999975322 1111111111
Q ss_pred -CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceee
Q 022074 130 -GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 208 (303)
Q Consensus 130 -~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (303)
.+.+......+..+++++.|+.++.||.+..+...... .+..
T Consensus 81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~----------------------------------~~~~--- 123 (369)
T 2hz6_A 81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLS----------------------------------SAFA--- 123 (369)
T ss_dssp HHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------------------------------
T ss_pred cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEec----------------------------------CCCc---
Confidence 01000001134567888889999999986543211110 0000
Q ss_pred eEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCC---CeEEEEeCCCCEEEeecCCC
Q 022074 209 LIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ---PMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 209 ~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~---~~las~s~Dg~i~~Wd~~~~ 284 (303)
..++|++..+++++.|+.|+.||.++|+.+-.+..+. ....+++++. ..++.++.||.+..||....
T Consensus 124 -------~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 124 -------DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp ----------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred -------ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence 0012356678889999999999999998654443221 1223344432 55777888999999997643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-06 Score=74.01 Aligned_cols=193 Identities=13% Similarity=0.109 Sum_probs=117.0
Q ss_pred EEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 43 FSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 43 ~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
-+..|+++++ .+++...++.|..||..++... .......+.++++.+ +++++++ . ++.|.+||...... +..
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~~~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~--~~~ 88 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--RVTMDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSA--VVL 88 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--EEECSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEE--EEE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--EEeCCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcE--EEE
Confidence 4678998655 5556667889999999887652 234456789999965 4666554 3 56888998642111 111
Q ss_pred eee-cc-cccCeEEEEeCCCCCEEEEEeCC---------CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 122 GVL-MG-HLEGITFIDSRGDGRYLISNGKD---------QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 122 ~~~-~~-h~~~v~~~~~~~~~~~l~s~~~D---------~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
... .+ ....+..+.+.++|+++++...+ ..-.+|.+....
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----------------------------- 139 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----------------------------- 139 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------------
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-----------------------------
Confidence 111 11 12346778889999876654332 223444332100
Q ss_pred CCCCCcceEEecccceeeeEEEeeeeeeeCCCeEE-EEEeCCCeEEEEEC--CCCeE-----EEEeecCCCCeEEEEECC
Q 022074 191 HPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDL--VSGEQ-----VAALKYHTSPVRDCSWHP 262 (303)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-atg~~dg~i~iwd~--~~~~~-----~~~~~~h~~~I~~v~~sp 262 (303)
...... ..........++++++.| ++.+.++.|++||+ .+++. ...+..+...+..+++++
T Consensus 140 -----~~~~~~------~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~ 208 (297)
T 3g4e_A 140 -----HVKKYF------DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA 208 (297)
T ss_dssp -----CEEEEE------EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT
T ss_pred -----CEEEEe------eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC
Confidence 000000 000111234578888765 55566899999997 45543 223333445688999999
Q ss_pred CCCeEEEEeCCCCEEEeecC
Q 022074 263 SQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~ 282 (303)
+|++.++...++.|.+||..
T Consensus 209 ~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 209 EGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp TSCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEcCCCEEEEEcCC
Confidence 99988888888889999976
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-06 Score=80.79 Aligned_cols=201 Identities=11% Similarity=0.092 Sum_probs=124.4
Q ss_pred CCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccc
Q 022074 49 TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHL 128 (303)
Q Consensus 49 ~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 128 (303)
+.+..+++...+++|.++|..+++...++.. ...+..+.+++ +++++++++.|+.|.+||+.. .+.+....+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~--~t~~~v~~i~~G- 239 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWM--KEPTTVAEIKIG- 239 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECT-TSCEEEEEETTSEEEEEETTS--SSCCEEEEEECC-
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECC-CCCEEEEEcCCCeEEEEECCC--CCCcEeEEEecC-
Confidence 3445677777899999999999987766643 34567889975 577888888999999999731 122223333221
Q ss_pred cCeEEEEeC----CCCCEEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecc
Q 022074 129 EGITFIDSR----GDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGH 203 (303)
Q Consensus 129 ~~v~~~~~~----~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (303)
.....+.++ |+|+++++++ .++++.++|...++........ .... ... .+ +
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~---------~~~~--~~~-----------~~--~ 295 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR---------GMTY--DEQ-----------EY--H 295 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC---------EECT--TTC-----------CE--E
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc---------cccc--ccc-----------cc--c
Confidence 234577888 6998887665 5699999997654322111100 0000 000 00 0
Q ss_pred cceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEE--EEeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEe
Q 022074 204 SVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQV--AALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRW 279 (303)
Q Consensus 204 ~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~--~~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~W 279 (303)
...+ ... ...+++ ..+++...++|.|.++|....+.+ ..+ .......++.|+|++++|++++ .++.|.++
T Consensus 296 p~~r-va~----i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 296 PEPR-VAA----ILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp SCCC-EEE----EEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred CCCc-eEE----EEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 0000 000 112333 345666678899999999765432 233 2345678999999999765544 67899999
Q ss_pred ecCCC
Q 022074 280 EFPGN 284 (303)
Q Consensus 280 d~~~~ 284 (303)
|.+..
T Consensus 370 D~~t~ 374 (567)
T 1qks_A 370 DTKEG 374 (567)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-07 Score=84.67 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=85.3
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
.+.. |..++| |+++|+++ .++.|++||+.+.........|...+..+.+.++ + +++++.||+|.+||++...
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~- 157 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKS- 157 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCC-
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCc-
Confidence 3445 999999 99999999 8899999999887655566778888998887654 2 8888999999999986221
Q ss_pred CCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 117 KGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 117 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
.. .+...|.+++|+|+| ++.|..|+++++|+...
T Consensus 158 ---~~----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 158 ---TK----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ---EE----EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred ---cc----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence 11 255689999999999 67899999999997654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.7e-06 Score=76.95 Aligned_cols=259 Identities=8% Similarity=-0.097 Sum_probs=139.1
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceE
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLS 74 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~ 74 (303)
+.+.+-+.++|---+.|.+.-++. .....+.|+. + .+.++|||++++++. .+++|.+||+.+++..
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~-v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGV-TLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTE-EEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred EEEECCccCCccceEEEEECCCCe-EEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 556666666553345565543333 2233445554 4 799999999999986 3688999999999988
Q ss_pred EEEecc-------cCCeEEEEEccCCCcEEEEecC--CCeEEE--EcCccccCCCccceeecccccCeEEEEeCCC-CCE
Q 022074 75 LRILAH-------TSDVNTVCFGDESGHLIYSGSD--DNLCKV--WDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRY 142 (303)
Q Consensus 75 ~~~~~h-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~l--Wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 142 (303)
.++... ......++++|+ +++++.+.. +..|.+ +|... ...+.- .+.+ .+.++ ...
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpD-Gk~lyVan~~~~~~v~V~~iD~~t-------v~~i~v-~~~~---~~~p~g~~~ 177 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCAS-SACLLFFLFGSSAAAGLSVPGASD-------DQLTKS-ASCF---HIHPGAAAT 177 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTT-SSCEEEEECSSSCEEEEEETTTEE-------EEEEEC-SSCC---CCEEEETTE
T ss_pred EEEECCCccccccCCCcceEEEcCC-CCEEEEEccCCCCeEEEEEEchhh-------ceEEEC-CCce---EEccCCCeE
Confidence 776533 123457888764 666666654 457888 99752 111110 0111 01122 234
Q ss_pred EEEEeCCCcEEEEEccc-----ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc----ceee-----
Q 022074 143 LISNGKDQAIKLWDIRK-----MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS----VLRT----- 208 (303)
Q Consensus 143 l~s~~~D~~v~lWdl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----- 208 (303)
+++.+.|+.+.+.|+.. .+...... ......-... ..+.....+.... ..+..++-.. ....
T Consensus 178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~ 253 (368)
T 1mda_H 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNE 253 (368)
T ss_dssp EECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSC
T ss_pred EEEEcCCCCEEEEECccccccCCeEEEEee-eeeeCCCCcc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecc
Confidence 45555677777777654 11110000 0000000000 0011111011111 1122111100 0000
Q ss_pred --------eEEEeeeeeeeCCCeEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEE
Q 022074 209 --------LIRCHFSPVYSTGQKYIYTGSH---------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSS 270 (303)
Q Consensus 209 --------~~~~~~~~~~s~~~~~latg~~---------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~ 270 (303)
.........++++++.+..+.. ++.+.++|..+++.+..+.... ..+.++|+||++ .+++.
T Consensus 254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEE
T ss_pred ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEc
Confidence 0000000236788777665533 2356699999999888876544 589999999997 56677
Q ss_pred e-CCCCEEEeecCCC
Q 022074 271 S-WDGDVVRWEFPGN 284 (303)
Q Consensus 271 s-~Dg~i~~Wd~~~~ 284 (303)
. .++++.++|.+..
T Consensus 333 ~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 333 SAGTEVLDIYDAASD 347 (368)
T ss_dssp ETTTTEEEEEESSSC
T ss_pred cCCCCeEEEEECCCC
Confidence 6 5999999998754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.71 E-value=7.6e-07 Score=86.44 Aligned_cols=220 Identities=14% Similarity=0.097 Sum_probs=127.4
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCe--------------EEEEECCCCce--EEEEec--
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC--------------IYVYDLEANKL--SLRILA-- 79 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~--------------v~lwd~~~~~~--~~~~~~-- 79 (303)
-+.|+++-+|.... +..+...+..++|+|| +.|+.++.|+. |++|++.++.. ...+..
T Consensus 190 ~i~v~dl~tg~~~~---~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 190 TVKFVGVADGKPLA---DELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEEEEETTTCCEEE---EEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCC---ccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 45666654443221 1112222357899999 99988887664 89999987752 222222
Q ss_pred ccCCeEEEEEccCCCcEEEEecCC-----CeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC----C
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDD-----NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----Q 150 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D----~ 150 (303)
+...+..+.|++ +++.++..+.+ ..|++||+.... ......+..+.+.+... +.++|..|+..+.+ .
T Consensus 266 ~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 266 LPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGK--IGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp CTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTE--ECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTC
T ss_pred CCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCC--CcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCC
Confidence 223578889975 56666655543 389999975220 01133444455444443 23778888776653 4
Q ss_pred cEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC
Q 022074 151 AIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 230 (303)
Q Consensus 151 ~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~ 230 (303)
.|.+||+.... . .+. . .+..+.. .+. ...++ ++.++++...
T Consensus 342 ~l~~~d~~~~~--~---------~~~----~-----------------l~~~~~~---~l~---~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 342 KIVRVDLSGST--P---------RFD----T-----------------VVPESKD---NLE---SVGIA-GNRLFASYIH 382 (741)
T ss_dssp EEEEEECSSSS--C---------EEE----E-----------------EECCCSS---EEE---EEEEE-BTEEEEEEEE
T ss_pred EEEEEeCCCCc--c---------ccE----E-----------------EecCCCC---eEE---EEEEE-CCEEEEEEEE
Confidence 48888865311 0 000 0 0000000 000 01122 4678888899
Q ss_pred CCeEEEEECC-CCeEEEEeecC-CCCeEEEEECCCCCeEE----EEeCCCCEEEeecCCC
Q 022074 231 DSCVYVYDLV-SGEQVAALKYH-TSPVRDCSWHPSQPMLV----SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 231 dg~i~iwd~~-~~~~~~~~~~h-~~~I~~v~~sp~~~~la----s~s~Dg~i~~Wd~~~~ 284 (303)
|+..++|... +++.+..+..+ ...+..++++|+++.|+ +....+++.+||+.+.
T Consensus 383 dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 383 DAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp TTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 9987777554 45666666543 56789999999998655 3334588999998653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-06 Score=72.91 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=112.6
Q ss_pred eEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 42 IFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 42 v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
.....|+++|+ .++++..++.|..|+. ++. ...+..+...++.+++.+ +++++++...++.|.+||.. . .
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g----~- 117 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-G----Q- 117 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-S----C-
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-C----C-
Confidence 56788999999 5666667889999998 444 334455666788999965 57777666667889999853 1 1
Q ss_pred ceeec----cc-ccCeEEEEeCCCCCEEEEE----eC-------------CCcEEEEEcccccCCcccccCccceeeece
Q 022074 121 AGVLM----GH-LEGITFIDSRGDGRYLISN----GK-------------DQAIKLWDIRKMSSNASCNLGFRSYEWDYR 178 (303)
Q Consensus 121 ~~~~~----~h-~~~v~~~~~~~~~~~l~s~----~~-------------D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~ 178 (303)
...+. +. ...+..+.+.++|++++|- .. .+.|..+|....
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------------------ 179 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------------------ 179 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC------------------
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC------------------
Confidence 11121 11 1235567788888877762 21 122333332110
Q ss_pred eeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCC------CeEEEEECCCCeEEE---Ee-
Q 022074 179 WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD------SCVYVYDLVSGEQVA---AL- 248 (303)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~d------g~i~iwd~~~~~~~~---~~- 248 (303)
.+....+ ........++++++.|+.+... +.|++||+..+. +. .+
T Consensus 180 -----------------~~~~~~~-------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~ 234 (305)
T 3dr2_A 180 -----------------PLQRMAD-------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFA 234 (305)
T ss_dssp -----------------CCEEEEE-------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEE
T ss_pred -----------------cEEEEec-------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEE
Confidence 0000000 0001123578899877777665 789999987554 21 11
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.........++++++|++.++. .+| |.+|+..+
T Consensus 235 ~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~g 267 (305)
T 3dr2_A 235 SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSDG 267 (305)
T ss_dssp CCSSSCCCSEEECTTSCEEECC-SSE-EEEECTTS
T ss_pred ECCCCCCCeEEECCCCCEEEec-CCc-EEEECCCC
Confidence 1223445678999999965555 444 88898654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=8.9e-06 Score=70.86 Aligned_cols=194 Identities=11% Similarity=-0.019 Sum_probs=115.5
Q ss_pred eEEEEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 42 IFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 42 v~~l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
..+..|+++++ .+++...++.|..||.+++.... + .....+.++++.++ ++++++. .+ .|.+||...... ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~--~~ 123 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVL--TL 123 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E-ECCCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcE--EE
Confidence 35678999755 55566678899999998876432 2 33467899999654 6666554 34 488898642211 01
Q ss_pred ceeec-cc-ccCeEEEEeCCCCCEEEEEeCC----CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 121 AGVLM-GH-LEGITFIDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 121 ~~~~~-~h-~~~v~~~~~~~~~~~l~s~~~D----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
..... +. ...+..+.++++|+++++...+ ....||.+... ..
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g----~~---------------------------- 171 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG----KV---------------------------- 171 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT----EE----------------------------
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC----cE----------------------------
Confidence 11110 11 2347788899999877655422 23444443210 00
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCeEEEE-EeCCCeEEEEECC--CC-e-----EEEEeecCCCCeEEEEECCCCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-GSHDSCVYVYDLV--SG-E-----QVAALKYHTSPVRDCSWHPSQP 265 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat-g~~dg~i~iwd~~--~~-~-----~~~~~~~h~~~I~~v~~sp~~~ 265 (303)
..+... ......+.++++++.++. ...++.|++||.. ++ + ....+......+..++++++|+
T Consensus 172 ---~~~~~~------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~ 242 (326)
T 2ghs_A 172 ---TKLFAD------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH 242 (326)
T ss_dssp ---EEEEEE------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred ---EEeeCC------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC
Confidence 000000 000112346788876544 4567899999985 55 3 2223333345678999999999
Q ss_pred eEEEEeCCCCEEEeecCC
Q 022074 266 MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~ 283 (303)
+.++...++.|.+|+..+
T Consensus 243 lwva~~~~~~v~~~d~~g 260 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDTDG 260 (326)
T ss_dssp EEEEEETTTEEEEECTTC
T ss_pred EEEEEeCCCEEEEECCCC
Confidence 888877778899998743
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-05 Score=64.96 Aligned_cols=229 Identities=7% Similarity=-0.041 Sum_probs=130.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE-EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
...+.++.+.++|+..++...++.|..||.. ++... ........+..+++.+ +++++++...++.|..+|.. .
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g--- 134 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-G--- 134 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-S---
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-C---
Confidence 3568899999999877776667889999988 55432 1222345688888864 57788777778899999864 1
Q ss_pred Cccce-eecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC-CCC
Q 022074 118 GKPAG-VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQ 195 (303)
Q Consensus 118 ~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (303)
.... .+......+..+.+.++++++++...++.|..+|....... ..... ... ....+...+........ ...
T Consensus 135 -~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~--~~~~~-~~~-~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 135 -TIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEE--YPLPT-NAA-APVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp -CEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE--EECSS-TTC-CEEEEEECTTSSEEEEETTTT
T ss_pred -CEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEE--eeCCC-CCC-CcceEEECCCCCEEEEccCCC
Confidence 1111 12223346788889999997777777888999987321100 00000 000 00111112221111111 111
Q ss_pred cceEEecccceeee-----EEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE-EEeecCCCCeEEEEECCCCCeEEE
Q 022074 196 SVATYKGHSVLRTL-----IRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV-AALKYHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 196 ~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~-~~~~~h~~~I~~v~~sp~~~~las 269 (303)
.+..++........ ........+.+++++.++...++.|..+|. +++.. ..+......+.+++++++|++.++
T Consensus 210 ~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~ 288 (300)
T 2qc5_A 210 KIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFA 288 (300)
T ss_dssp EEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred EEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEE
Confidence 22222211100000 000112335677887777667799999998 45543 223334567899999999997777
Q ss_pred EeCCCCEEEeec
Q 022074 270 SSWDGDVVRWEF 281 (303)
Q Consensus 270 ~s~Dg~i~~Wd~ 281 (303)
.. + .|..++.
T Consensus 289 ~~-~-~i~~~~p 298 (300)
T 2qc5_A 289 LK-C-KIGKLNL 298 (300)
T ss_dssp CS-S-EEEEEEE
T ss_pred cc-C-ceEEeCC
Confidence 65 4 6666664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-05 Score=72.94 Aligned_cols=228 Identities=11% Similarity=0.059 Sum_probs=129.7
Q ss_pred CCCCEEEEeeCC-----CeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec----------CCCeEEEEcCcc
Q 022074 49 TDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS----------DDNLCKVWDRRC 113 (303)
Q Consensus 49 ~~g~~l~sgs~D-----g~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~lWd~~~ 113 (303)
++++++++.... ++|.++|+.+.+...++..-..+ .++++|+ ++.++.+. .++.|.++|...
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 577777776553 69999999999988777654444 7889765 55555444 467899999763
Q ss_pred ccCCCccceeec-c------cccCeEEEEeCCCCCEEEEEeC--CCcEEEEEcccccCCcccccCccc----------ee
Q 022074 114 LNVKGKPAGVLM-G------HLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRS----------YE 174 (303)
Q Consensus 114 ~~~~~~~~~~~~-~------h~~~v~~~~~~~~~~~l~s~~~--D~~v~lWdl~~~~~~~~~~~~~~~----------~~ 174 (303)
. +....+. + ....-..+.+++||++++.++. ++.|.+.|+...+.......+... ..
T Consensus 159 ~----~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~ 234 (426)
T 3c75_H 159 F----LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYM 234 (426)
T ss_dssp C----CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred C----cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEE
Confidence 2 2232221 1 0122345678999999988774 578999998865433222211000 00
Q ss_pred ee----ceeeeC-------------CC-------------CCccc-cCCCCCcceEEecccceeeeE-E-----------
Q 022074 175 WD----YRWMDY-------------PP-------------QARDL-KHPCDQSVATYKGHSVLRTLI-R----------- 211 (303)
Q Consensus 175 ~~----~~~~~~-------------~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~-~----------- 211 (303)
.. ...... .. ....+ .......+..++......... .
T Consensus 235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD 314 (426)
T ss_dssp EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence 00 000011 00 00000 000000111111100000000 0
Q ss_pred -----EeeeeeeeCCCeEEEEEeC----------CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEe-CCC
Q 022074 212 -----CHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSS-WDG 274 (303)
Q Consensus 212 -----~~~~~~~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s-~Dg 274 (303)
......++++++.+..... ++.|.+.|..+++.+.++..-. ..+.++|+||++ .++++. .++
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTT
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCC
Confidence 0001245677665555432 3579999999999988886432 589999999998 888887 599
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
.+.++|....
T Consensus 394 ~VsVID~~t~ 403 (426)
T 3c75_H 394 TLHIYDAATG 403 (426)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 9999998754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-05 Score=67.77 Aligned_cols=189 Identities=17% Similarity=0.147 Sum_probs=111.4
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-----cCCeEEEEEccCCCcEEEEecCC----CeEEEEc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYSGSDD----NLCKVWD 110 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~s~d----g~v~lWd 110 (303)
..+.++.++++|+.+++ +.++ |.+||..+++... +... ...++.+++.+ +++++++...+ +...||.
T Consensus 90 ~~v~~i~~~~dg~l~v~-~~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEE
T ss_pred CcceEEEEeCCCeEEEE-ECCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEE
Confidence 46889999999986665 4454 9999998887543 3221 13578888865 56666654321 2334443
Q ss_pred CccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcc--cc-cCCcccccCccceeeeceeeeCCCCC
Q 022074 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIR--KM-SSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+. .+. ...+..+......+.++++++.+ ++.+.++.|.+||+. .. .... .+ .+
T Consensus 166 ~~----~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----~~--~~----------- 222 (326)
T 2ghs_A 166 VA----KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK-----AE--VF----------- 222 (326)
T ss_dssp EE----TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC-----CE--EE-----------
T ss_pred Ee----CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC-----ce--EE-----------
Confidence 32 111 11222233446688899999866 455567899999975 11 1000 00 00
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC-CCCC
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP 265 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s-p~~~ 265 (303)
..+..... .. ....+.+++.+.++...++.|.+||. +++.+..+..+...+++++|+ |+++
T Consensus 223 -----------~~~~~~~~---~p---~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 223 -----------IDSTGIKG---GM---DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp -----------EECTTSSS---EE---EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred -----------EECCCCCC---CC---CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCC
Confidence 00000000 00 01124567777777667789999998 577777777777789999998 8887
Q ss_pred eE-EEEeCC
Q 022074 266 ML-VSSSWD 273 (303)
Q Consensus 266 ~l-as~s~D 273 (303)
.| ++...+
T Consensus 285 ~L~vt~~~~ 293 (326)
T 2ghs_A 285 RLLVTSARE 293 (326)
T ss_dssp EEEEEEBCT
T ss_pred EEEEEecCC
Confidence 55 444433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-05 Score=67.99 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=111.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc-----CCeEEEEEccCCCcEEEE----ecC-------
Q 022074 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYS----GSD------- 102 (303)
Q Consensus 39 ~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~-----~~v~~l~~~~~~~~~l~s----~s~------- 102 (303)
...+.++.++++|+.+++...++.|.+|+.+ ++.. .+..+. ..++.+++.+ ++++++| |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~-~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH-LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE-EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccc
Confidence 3458899999999966665566789999986 5432 222211 2456788864 5778876 432
Q ss_pred ------CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC------CcEEEEEcccccCCcccccCc
Q 022074 103 ------DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 103 ------dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D------~~v~lWdl~~~~~~~~~~~~~ 170 (303)
.+.|..+|... ++ ...+. .......++++++++.|+.+... +.|.+||+.... ....
T Consensus 162 ~~~~~~~~~v~~~d~~~----g~-~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~---- 230 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDG----SP-LQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR---- 230 (305)
T ss_dssp CCCSSSCEEEEEECSSS----CC-CEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE----
T ss_pred cccccCCCeEEEEcCCC----Cc-EEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC----
Confidence 24567777531 22 22222 33456778899999977766654 688888875321 0000
Q ss_pred cceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
+ .+ .... .+.. ....+.++|.+.+ +..+ .|.+||. .++.+..+..
T Consensus 231 ~--~~----~~~~-----------------~~~p---------dgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~ 275 (305)
T 3dr2_A 231 R--HF----ASVP-----------------DGLP---------DGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPT 275 (305)
T ss_dssp E--EE----ECCS-----------------SSCC---------CSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEEC
T ss_pred e--EE----EECC-----------------CCCC---------CeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEEC
Confidence 0 00 0000 0000 0112346677444 4444 4999998 5777777766
Q ss_pred CCCCeEEEEECCCCCeEEEEeCCC
Q 022074 251 HTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 251 h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
+. .+..++|+|+++.|..++.++
T Consensus 276 ~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 276 PG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SS-CCCEEEECTTSCEEEEEETTE
T ss_pred CC-ceeEEEEeCCCCEEEEEcCCe
Confidence 55 589999999998777776654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-08 Score=89.05 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=95.6
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC-CeEE-EEEcc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNT-VCFGD 91 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~-~v~~-l~~~~ 91 (303)
+.|..+..++.-+|...-... . .++.+..+..+++.+++++.||.|+.||..+|+...++..+.. .+.. ...
T Consensus 16 s~dg~v~a~d~~tG~~~W~~~-~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~-- 89 (369)
T 2hz6_A 16 TLDGSLHAVSKRTGSIKWTLK-E---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCR-- 89 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-C---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC--
T ss_pred cCCCEEEEEECCCCCEEEEec-C---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceE--
Confidence 345566667766666321101 0 2344444556787888889999999999988876544433321 1110 011
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
..+..+++++.|+.++.||.+..+ ..-.+..+. ...+++++..+++++.|+.|+.||.+..+.......
T Consensus 90 ~~~~~v~~g~~dg~v~a~D~~tG~----~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~--- 158 (369)
T 2hz6_A 90 SSDGILYMGKKQDIWYVIDLLTGE----KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY--- 158 (369)
T ss_dssp -----CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEEEE---
T ss_pred ecCCEEEEEeCCCEEEEEECCCCc----EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec---
Confidence 123467788889999999976332 222222221 122345777899999999999999875432211100
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC---CeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG---QKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
. ....+.+..+ ...+++++.||.++.||..+|+.+-.+
T Consensus 159 -------------------------------~--------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 159 -------------------------------F--------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp -------------------------------E--------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred -------------------------------c--------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 0 0011112221 134667889999999999999987666
Q ss_pred ecCCCCeE-EEEECCCCC
Q 022074 249 KYHTSPVR-DCSWHPSQP 265 (303)
Q Consensus 249 ~~h~~~I~-~v~~sp~~~ 265 (303)
+ ...++. ...+++++.
T Consensus 200 ~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 200 N-YASPVVAFYVWQREGL 216 (369)
T ss_dssp E-CSSCEEEEEECTTSSC
T ss_pred c-CCCceEEEEEecCCce
Confidence 5 334554 345666664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=6.5e-05 Score=63.43 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCEEEEee-C--CCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 42 IFSLKFSTDGRELVAGS-S--DDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~--Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
...+.|++++ .|+.++ . ++.|+++|+.+++....+.- .......+++. .+++.++.-.++.+.++|...
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t---- 95 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRT---- 95 (266)
T ss_dssp EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTT----
T ss_pred cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCC----
Confidence 5778999986 455543 2 57999999999998766542 22233455553 245566666788999999753
Q ss_pred Cccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
.+....+. +...+ ..+ .+++..++.+..++.|.++|....+.......+.
T Consensus 96 ~~v~~~i~~g~~~g-~gl--t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-------------------------- 146 (266)
T 2iwa_A 96 LSNIKNFTHQMKDG-WGL--ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-------------------------- 146 (266)
T ss_dssp TEEEEEEECCSSSC-CEE--EECSSSEEEECSSSEEEEECTTTCCEEEEEECEE--------------------------
T ss_pred CcEEEEEECCCCCe-EEE--EECCCEEEEECCCCeEEEEECCCCcEEEEEEECC--------------------------
Confidence 23333332 20122 223 3466656555568899999976432211110000
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEECCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPS 263 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-------------~~~I~~v~~sp~ 263 (303)
.+... . ..+...+. +++..+....++.|.+.|..+++.+..+... ..-.+.++|+|+
T Consensus 147 ----~~~p~-~----~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 147 ----NGHRV-I----RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp ----TTEEC-C----CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred ----CCccc-c----cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence 00000 0 00011133 5666666667899999999999988887632 135689999999
Q ss_pred CC-eEEEEeCCCCEEEeecCC
Q 022074 264 QP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 264 ~~-~las~s~Dg~i~~Wd~~~ 283 (303)
++ +++|+.....+..-++..
T Consensus 217 ~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 217 NKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTEEEEEETTCSEEEEEEEEE
T ss_pred CCEEEEECCCCCeEEEEEEec
Confidence 76 677787888888888754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-06 Score=73.34 Aligned_cols=225 Identities=11% Similarity=0.022 Sum_probs=119.7
Q ss_pred cceEEEEEcCCCCEEEEee--CCCeEEEEECCCCceEEEEe-------cccCCeEEEEEccCCCcEEEEecC-----CCe
Q 022074 40 FGIFSLKFSTDGRELVAGS--SDDCIYVYDLEANKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSD-----DNL 105 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs--~Dg~v~lwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~s~-----dg~ 105 (303)
.....++++++|+.+++.. .++.++||.+.++++ ..+. .|...+..+++.+ +++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCe
Confidence 4588999999999888853 234355665555543 2221 2345788999964 4666554433 578
Q ss_pred EEEEcCccccCCCccceeec------ccccCeEEEEeCCC-CCEEEEEe---CCCcEEEEEcccccCCcccccCccceee
Q 022074 106 CKVWDRRCLNVKGKPAGVLM------GHLEGITFIDSRGD-GRYLISNG---KDQAIKLWDIRKMSSNASCNLGFRSYEW 175 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~-~~~l~s~~---~D~~v~lWdl~~~~~~~~~~~~~~~~~~ 175 (303)
|.+||+.. ++....+. .+...+..+.+.++ +..+++.. .++.|.+||+.......... .......
T Consensus 95 i~~~d~~t----g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~ 169 (343)
T 2qe8_A 95 LVAWDTLN----NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAP 169 (343)
T ss_dssp EEEEETTT----TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSC
T ss_pred EEEEECCC----CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccc
Confidence 99999752 22222221 12234567778765 44456665 68899999986432110000 0000000
Q ss_pred eceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC-eEEEEECC---CCe-----EEE
Q 022074 176 DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-CVYVYDLV---SGE-----QVA 246 (303)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg-~i~iwd~~---~~~-----~~~ 246 (303)
+ ...+.+... .+....................++++++.|+.+..++ .++.++.. .+. ...
T Consensus 170 ~--~~~~~~~g~--------~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 239 (343)
T 2qe8_A 170 E--DIDLVIDGV--------PVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS 239 (343)
T ss_dssp C--SCCCEETTE--------ECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT
T ss_pred c--ccceeECCE--------EEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc
Confidence 0 000000000 0000000000000000112345788998888877665 56555532 110 000
Q ss_pred --EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 247 --ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 247 --~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
...++......++++++|+++++...++.|.+||.
T Consensus 240 ~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 240 KIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp TCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred ceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 11134445678999999999999999999999997
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-05 Score=75.59 Aligned_cols=218 Identities=13% Similarity=0.149 Sum_probs=120.4
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCe-------------EEEEECCCCceE--EEEe--
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------------IYVYDLEANKLS--LRIL-- 78 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~-------------v~lwd~~~~~~~--~~~~-- 78 (303)
.+-+.|++.-+|.... + .-+......++|+ ||+.|+.++.+.. |++|++.+++.. ....
T Consensus 154 ~~~i~v~dl~tg~~~~--~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~ 229 (693)
T 3iuj_A 154 WREIHLMDVESKQPLE--T-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI 229 (693)
T ss_dssp EEEEEEEETTTCSEEE--E-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS
T ss_pred eEEEEEEECCCCCCCc--c-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC
Confidence 3556667665554221 1 1111113568899 9999999888754 999999876531 1122
Q ss_pred c-ccCCeEEEEEccCCCcEE-EEecC---CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCC---
Q 022074 79 A-HTSDVNTVCFGDESGHLI-YSGSD---DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKD--- 149 (303)
Q Consensus 79 ~-h~~~v~~l~~~~~~~~~l-~s~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D--- 149 (303)
. |......+.|+++ ++.+ ++.+. +..|+++|+.... .....+..+.+..... ++++|..| +....|
T Consensus 230 ~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~~~---~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~ 304 (693)
T 3iuj_A 230 PAQHHRYVGATVTED-DRFLLISAANSTSGNRLYVKDLSQEN---APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPN 304 (693)
T ss_dssp GGGCCSEEEEEECTT-SCEEEEEEESSSSCCEEEEEETTSTT---CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTT
T ss_pred CCCCeEEEEEEEcCC-CCEEEEEEccCCCCcEEEEEECCCCC---CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCC
Confidence 2 3345678889765 5554 44432 3589999975321 1233455555555443 44455554 444443
Q ss_pred CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe
Q 022074 150 QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229 (303)
Q Consensus 150 ~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~ 229 (303)
..|..+|+...... .| ..+..+... .+ .++++++.|+...
T Consensus 305 ~~l~~~d~~~~~~~----------~~----------------------~~l~~~~~~--~~------~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 305 RRLVTVDAANPGPA----------HW----------------------RDLIPERQQ--VL------TVHSGSGYLFAEY 344 (693)
T ss_dssp CEEEEEETTSCCGG----------GC----------------------EEEECCCSS--CE------EEEEETTEEEEEE
T ss_pred CEEEEEeCCCCCcc----------cc----------------------EEEecCCCC--EE------EEEEECCEEEEEE
Confidence 56777776532110 00 001111100 01 1344555555544
Q ss_pred -CCC--eEEEEECCCCeEEEEee-cCCCCeEEEEECCCCCeEEEEeCC----CCEEEeecCC
Q 022074 230 -HDS--CVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWD----GDVVRWEFPG 283 (303)
Q Consensus 230 -~dg--~i~iwd~~~~~~~~~~~-~h~~~I~~v~~sp~~~~las~s~D----g~i~~Wd~~~ 283 (303)
.++ .|++||+..+. ...+. .....+..+.++|+++.|+....+ +++..||+.+
T Consensus 345 ~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred EECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence 454 68999987544 44443 234567888899998866555444 7888888754
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=2.9e-05 Score=69.17 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=114.7
Q ss_pred EEEcCCCCEEEEeeC-----CCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec----------CCCeEEEE
Q 022074 45 LKFSTDGRELVAGSS-----DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS----------DDNLCKVW 109 (303)
Q Consensus 45 l~~s~~g~~l~sgs~-----Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~lW 109 (303)
....|+++++++... ++.|.++|..+++...++..-..+ . ++++|+ ++.++.++ .+++|.+|
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCCCEEEEE
Confidence 344689999888876 679999999999988777644444 3 889765 55555443 36789999
Q ss_pred cCccccCCCccceeec-cc------ccCeEEEEeCCCCCEEEEEeC--CCcEEEEEcccccCCcccccCccceeeeceee
Q 022074 110 DRRCLNVKGKPAGVLM-GH------LEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWM 180 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~-~h------~~~v~~~~~~~~~~~l~s~~~--D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~ 180 (303)
|.... +....+. +. ...-..+.+++||++++.++. ++.|.++|+...+.......
T Consensus 115 D~~t~----~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------------ 178 (386)
T 3sjl_D 115 DPVTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------------ 178 (386)
T ss_dssp CTTTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------------
T ss_pred ECCCC----eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------------
Confidence 97632 2333221 11 112345678999999887764 68999999875432111100
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC-CeEEEEeecC----CCCe
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS-GEQVAALKYH----TSPV 255 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~-~~~~~~~~~h----~~~I 255 (303)
.+ | ...++.+.+.+++.+.||.+.+.++.+ ++.......+ ..++
T Consensus 179 --------------------~g---------~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~ 227 (386)
T 3sjl_D 179 --------------------PD---------C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 227 (386)
T ss_dssp --------------------CS---------E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCB
T ss_pred --------------------CC---------c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccc
Confidence 00 0 001122344566777788888888865 4532211111 1233
Q ss_pred E-EEEE-CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 256 R-DCSW-HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 256 ~-~v~~-sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
. ..+| .++|+++. .+.+|++.+.|..+.
T Consensus 228 ~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 228 INHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp CSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred cccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 2 2466 46787655 445789999998643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0001 Score=61.89 Aligned_cols=218 Identities=12% Similarity=0.084 Sum_probs=113.7
Q ss_pred CCceEEEEEccCchhhccc-cccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec
Q 022074 1 MSPIVHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 79 (303)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~ 79 (303)
|||--.||-=.-|+|---. +-.|+. +..+-+...++ ..+.|+ ++....+.+.+|.|+.+|+++++...++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~Vv---~~~phd~~~ft---qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~ 93 (268)
T 3nok_A 21 MSPTNRPVPDAGGSVQEPVRRVAHII---REYPHATNAFT---QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERL 93 (268)
T ss_dssp --------------CCCCEEEEEEEE---EEEECCTTCCE---EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEEC
T ss_pred cCCCCCcCCCCCCcccCccccceEEE---EEEcCCCcccc---ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECC
Confidence 6777777766667776110 111221 11122333443 445676 455666677888999999999987766622
Q ss_pred ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 80 h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
....-..+++ ..+++....-.++.+.++|... .+.+..+.-..++ ..++ +++..|+.+..++.|.++|...
T Consensus 94 ~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~T----l~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T 164 (268)
T 3nok_A 94 GNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMP----PQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDG 164 (268)
T ss_dssp TTCCEEEEEE--CSSCEEEEESSSCEEEEEETTT----TEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTT
T ss_pred CCcceeEEEE--eCCEEEEEEccCCEEEEEECCc----CcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCC
Confidence 2222233555 3356666666789999999753 2333333321222 2232 4566666666688999999765
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEEC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDL 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~ 239 (303)
.+........ ..+.. ...+.. ..+. +|+..+....+..|.+.|.
T Consensus 165 ~~v~~~I~V~------------------------------~~g~~-v~~lNe----Le~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 165 FALVGAVQVK------------------------------LRGQP-VELINE----LECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp CCEEEEEECE------------------------------ETTEE-CCCEEE----EEEE-TTEEEEEETTCSEEEEECT
T ss_pred CeEEEEEEeC------------------------------CCCcc-cccccc----cEEe-CCEEEEEECCCCeEEEEeC
Confidence 3321111000 00000 000000 0112 5776666667889999999
Q ss_pred CCCeEEEEeecC-------------CCCeEEEEECCCCC-eEEEE
Q 022074 240 VSGEQVAALKYH-------------TSPVRDCSWHPSQP-MLVSS 270 (303)
Q Consensus 240 ~~~~~~~~~~~h-------------~~~I~~v~~sp~~~-~las~ 270 (303)
.+|+.+..+... .+-.+.+||+|+++ +++||
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999988877532 13568999999765 56655
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00014 Score=61.01 Aligned_cols=183 Identities=12% Similarity=0.124 Sum_probs=105.3
Q ss_pred EEEEEcCCCCEEEEeeCCC--eEEEEECCCCceEEEEecccC-CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 43 FSLKFSTDGRELVAGSSDD--CIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~Dg--~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
..+.|+ ++....+.+.+| .|+.+|+++++...++.-... .-..++.. .+++....-.++.+.++|... .+
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t----~~ 118 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRN----LR 118 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTT----CC
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECcc----Cc
Confidence 456787 666566666666 899999999998766543221 12334442 345555555688999999753 23
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceE
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (303)
....+.-..++ ..++ +++..|+.+..+..|.++|.............
T Consensus 119 ~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~------------------------------ 165 (262)
T 3nol_A 119 QVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVT------------------------------ 165 (262)
T ss_dssp EEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECE------------------------------
T ss_pred EEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEec------------------------------
Confidence 34333321222 2222 34555555445778888887643321111000
Q ss_pred EecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC------------CCCeEEEEECCCCCeE
Q 022074 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------TSPVRDCSWHPSQPML 267 (303)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h------------~~~I~~v~~sp~~~~l 267 (303)
..+... ..+- ...+. +|+..+....+..|.+.|..+|+.+..+... ..-.+.+||+|+++.|
T Consensus 166 ~~g~~~-~~lN----ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 166 AHGEEL-PELN----ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp ETTEEC-CCEE----EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred cCCccc-cccc----eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 000000 0000 00122 5776766668899999999999988877642 1246899999987755
Q ss_pred EEEe
Q 022074 268 VSSS 271 (303)
Q Consensus 268 as~s 271 (303)
..++
T Consensus 240 fVTG 243 (262)
T 3nol_A 240 FVTG 243 (262)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.1e-05 Score=71.30 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=39.3
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEECCCCCe-EEEEe
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPM-LVSSS 271 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~-~I~~v~~sp~~~~-las~s 271 (303)
+++.+.+++.|+.||.++.||.++|+++-.++.... ...-+.|+.+|++ ++..+
T Consensus 482 ~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 482 LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 344567888899999999999999999988764432 2244677889874 44443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00068 Score=60.16 Aligned_cols=186 Identities=12% Similarity=0.041 Sum_probs=109.7
Q ss_pred EEcCCCCEEEEeeC--CC---eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec----------CCCeEEEEc
Q 022074 46 KFSTDGRELVAGSS--DD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS----------DDNLCKVWD 110 (303)
Q Consensus 46 ~~s~~g~~l~sgs~--Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~lWd 110 (303)
...|+++++++... .+ +|.++|..+++...++..-... .++++|+ ++.++.+. .++.|.+||
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEE
Confidence 34478888777653 22 8899999999877665543333 8889765 66666654 367899999
Q ss_pred CccccCCCccceeec-c------cccCeEEEEeCCCCCEEEEEeC--CCcEEEEEcccccCCcc-cccCccceeeeceee
Q 022074 111 RRCLNVKGKPAGVLM-G------HLEGITFIDSRGDGRYLISNGK--DQAIKLWDIRKMSSNAS-CNLGFRSYEWDYRWM 180 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~-~------h~~~v~~~~~~~~~~~l~s~~~--D~~v~lWdl~~~~~~~~-~~~~~~~~~~~~~~~ 180 (303)
....+ ....+. + +...-..+.++|+|++|+.++. +++|.++| ...+.... ..
T Consensus 104 ~~t~~----~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~------------- 165 (373)
T 2mad_H 104 PVTFL----PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS------------- 165 (373)
T ss_pred CCCCc----EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-------------
Confidence 75322 222111 1 0122346789999999988774 57899999 65332110 00
Q ss_pred eCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-----cCCCCe
Q 022074 181 DYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPV 255 (303)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-----~h~~~I 255 (303)
...+ .+. +....+.+++.+.||.+.++|. +++.+.... ....++
T Consensus 166 ------------~~~~---------------~~~---~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 166 ------------SPTC---------------YHI---HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred ------------CCce---------------EEE---EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence 0000 000 1112344566778999999999 877653322 112232
Q ss_pred -EEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 256 -RDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 256 -~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
....+.+++..++-.+.++.+.+.|+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~ 243 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccC
Confidence 2356677765444344677888888753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0001 Score=70.78 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=48.3
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCCe-EEEEeC----------------CCCEEEe
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQPM-LVSSSW----------------DGDVVRW 279 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~~-las~s~----------------Dg~i~~W 279 (303)
++..+.+++.++.||.+++||.++|+.+..+.... ....-+.|+++|++ ++..+. .+.+..|
T Consensus 484 ~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f 563 (677)
T 1kb0_A 484 LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF 563 (677)
T ss_dssp EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEE
T ss_pred eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEE
Confidence 34456678889999999999999999998886443 23344567788874 444333 4688888
Q ss_pred ecCCCC
Q 022074 280 EFPGNG 285 (303)
Q Consensus 280 d~~~~~ 285 (303)
.++..+
T Consensus 564 ~l~~~a 569 (677)
T 1kb0_A 564 VVGGKA 569 (677)
T ss_dssp EETCBC
T ss_pred eccccc
Confidence 887543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00039 Score=62.79 Aligned_cols=102 Identities=16% Similarity=0.016 Sum_probs=65.7
Q ss_pred EEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceEEE
Q 022074 7 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLSLR 76 (303)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~~~ 76 (303)
..+-+..+|...+.|.+.-++.-. ...+.|.. + .+.++|||++++++. .++.|.++|..+.+...+
T Consensus 89 V~n~~~~~~~~~VsVID~~t~~vv-~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~ 164 (426)
T 3c75_H 89 IQDPAHFAAITQQFVIDGSTGRIL-GMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD 164 (426)
T ss_dssp EEECTTTCSSEEEEEEETTTTEEE-EEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred EECCCcCCCCCeEEEEECCCCEEE-EEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence 333333333356667766555422 22333432 4 799999999998886 367899999999987766
Q ss_pred Eecc-------cCCeEEEEEccCCCcEEEEecC--CCeEEEEcCcc
Q 022074 77 ILAH-------TSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRC 113 (303)
Q Consensus 77 ~~~h-------~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~ 113 (303)
+.-. ......+++++ ++++++.+.. +++|.+.|+..
T Consensus 165 I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t 209 (426)
T 3c75_H 165 IELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEG 209 (426)
T ss_dssp EEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTT
T ss_pred EECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCC
Confidence 5421 12345678865 4667766653 57899999763
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=64.31 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=78.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE----EecccCCe--EEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR----ILAHTSDV--NTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~----~~~h~~~v--~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
....+++++|++..|+++..++.|+.||..++..... ..++...- +.++|++..+.++++-..++.|+.|+...
T Consensus 219 ~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 219 GKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 4567899999655666677788999999988764322 11222222 28999775677888888889999998641
Q ss_pred ccCCCccceeecccc---------------cCeEEEEeCCCCCEEEEEe-CCCcEEEEEcc
Q 022074 114 LNVKGKPAGVLMGHL---------------EGITFIDSRGDGRYLISNG-KDQAIKLWDIR 158 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~---------------~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~ 158 (303)
. ...+.++. .....+++.++|+++++.. .++.|+.||+.
T Consensus 299 -----~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 299 -----E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp -----C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred -----C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 1 11222221 2366888999999888888 89999999964
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0019 Score=53.46 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCEEEEeeCC--CeEEEEECCCCceEEEEecccC-CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 42 IFSLKFSTDGRELVAGSSD--DCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~D--g~v~lwd~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
...+.|+. +....+.+.+ ..|+.+|+++++...++.-... .-..++.. .+++....-.++.+.++|... .
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~t----l 95 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLAT----L 95 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTT----T
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCc----C
Confidence 34567875 4445555554 4899999999998766543221 22334442 345665666788999999753 2
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
+.+..+.-..++ ..++ +++..|+.+..++.|.++|....+......... . ...+
T Consensus 96 ~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~--------------~--------g~~~- 149 (243)
T 3mbr_X 96 TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA--------------G--------GRPL- 149 (243)
T ss_dssp EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE--------------T--------TEEC-
T ss_pred cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc--------------C--------Cccc-
Confidence 334443322222 2333 345445444458889999976533211110000 0 0000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEECCCCC
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-------------TSPVRDCSWHPSQP 265 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-------------~~~I~~v~~sp~~~ 265 (303)
..+. .+. + .+++..+....+..|.+.|..+|+.+..+... .+-.+.+||+|+++
T Consensus 150 -----~~lN-eLe------~-~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 150 -----DNLN-ELE------W-VNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp -----CCEE-EEE------E-ETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred -----ccce-eeE------E-eCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 0000 011 1 15676666667889999999999988877522 12468999999866
Q ss_pred -eEEEE
Q 022074 266 -MLVSS 270 (303)
Q Consensus 266 -~las~ 270 (303)
+++||
T Consensus 217 ~lfVTG 222 (243)
T 3mbr_X 217 RLFVTG 222 (243)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 55555
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0007 Score=61.16 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=110.5
Q ss_pred CCCCEEEE-eeCCCeEEEEECCCC----ceEEEEe------ccc-CCeEEEEEccCCCcEEEEecCC------CeEEEEc
Q 022074 49 TDGRELVA-GSSDDCIYVYDLEAN----KLSLRIL------AHT-SDVNTVCFGDESGHLIYSGSDD------NLCKVWD 110 (303)
Q Consensus 49 ~~g~~l~s-gs~Dg~v~lwd~~~~----~~~~~~~------~h~-~~v~~l~~~~~~~~~l~s~s~d------g~v~lWd 110 (303)
.++++|++ |..+++|+++|+.+. ++...+. ... ..-..+...| ++ +++++..+ +.|.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence 77887666 556888999999765 3444331 111 1222344444 45 77777655 7899999
Q ss_pred CccccCCCccceeec-c-cccCeE-EEEeCCCCCEEEEEe-------------------CCCcEEEEEcccccCCccccc
Q 022074 111 RRCLNVKGKPAGVLM-G-HLEGIT-FIDSRGDGRYLISNG-------------------KDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~-~-h~~~v~-~~~~~~~~~~l~s~~-------------------~D~~v~lWdl~~~~~~~~~~~ 168 (303)
.... +.++... + ....+. .+-++|+++.+++.. .+.+|.+||+...+....
T Consensus 171 ~~T~----~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t--- 243 (462)
T 2ece_A 171 HYSF----EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS--- 243 (462)
T ss_dssp TTTC----CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE---
T ss_pred CCCC----eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE---
Confidence 7532 3333332 1 222221 245688999888884 479999999864321111
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe------CCCeEEEEECCCC
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS------HDSCVYVYDLVSG 242 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~------~dg~i~iwd~~~~ 242 (303)
++-... .....+....|+|+++++..++ .+++|.+|..+.+
T Consensus 244 -------------------------------I~vg~~--g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 244 -------------------------------LTLGEE--NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp -------------------------------EESCTT--EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred -------------------------------EecCCC--CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 000000 0000111123578888877776 4668888776655
Q ss_pred eE--EEEe--ecC----------------CCCeEEEEECCCCCeEEEE-eCCCCEEEeecC
Q 022074 243 EQ--VAAL--KYH----------------TSPVRDCSWHPSQPMLVSS-SWDGDVVRWEFP 282 (303)
Q Consensus 243 ~~--~~~~--~~h----------------~~~I~~v~~sp~~~~las~-s~Dg~i~~Wd~~ 282 (303)
+. +..+ ... .....++.+|||+++|..+ -..+.|.++|+.
T Consensus 291 ~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 291 KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 32 1111 110 1347899999999975544 447899999985
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0015 Score=55.96 Aligned_cols=214 Identities=14% Similarity=0.098 Sum_probs=111.4
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccC
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~ 130 (303)
+..+.+++.++.+..+|.. ++.......+...+..+... +++. +..++.++.+..+|.. . .....+......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~-l~vgt~~~~l~~~d~~-g----~~~~~~~~~~~~ 178 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS-EDGT-IYVGSNDNYLYAINPD-G----TEKWRFKTNDAI 178 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC-TTSC-EEEECTTSEEEEECTT-S----CEEEEEECSSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc-CCCE-EEEEcCCCEEEEECCC-C----CEeEEEecCCCc
Confidence 5568888889999999998 66554444444455555553 3454 5567778899999864 2 222222222334
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeE
Q 022074 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLI 210 (303)
Q Consensus 131 v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (303)
+..+...+++.+++ ++ +.+..+| .............. .+..+....+...........+..++.........
T Consensus 179 ~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~----~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 179 TSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYW----TVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRF 250 (330)
T ss_dssp CSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSC----CCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEE
T ss_pred eeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCc----ceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEe
Confidence 44555556676444 44 7888888 32211111100000 00000000111111111111222222111000000
Q ss_pred E----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 211 R----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 211 ~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
. ....+....++ .|..++.+|.|..+|. +++.+..+......+.++...+++++.+ ++.+|.+++-..+.
T Consensus 251 ~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 251 KTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLE 324 (330)
T ss_dssp ECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC--
T ss_pred eCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccc
Confidence 0 00122233345 4677888889999996 6777666665566778888888887555 67799999877543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0032 Score=56.89 Aligned_cols=203 Identities=12% Similarity=0.067 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCEEEEeeCC------CeEEEEECCCCceEEEEecccC---CeEEEEEccCCCcEEEEec-----------
Q 022074 42 IFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSLRILAHTS---DVNTVCFGDESGHLIYSGS----------- 101 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~D------g~v~lwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l~s~s----------- 101 (303)
-..+..+|+| .++++..+ |.|.++|.++.+...++..-.. .-..+-|+|+ .+.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~-~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLP-NEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETT-TTEEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCC-CCEEEEccCcCcccccccc
Confidence 3556788999 66666555 7899999999988777652211 1224666654 66887875
Q ss_pred --------CCCeEEEEcCccccCCCccceeeccc-c-cCeEEE--EeCCCCCEEEEEe------CCCcEEEEEcccccCC
Q 022074 102 --------DDNLCKVWDRRCLNVKGKPAGVLMGH-L-EGITFI--DSRGDGRYLISNG------KDQAIKLWDIRKMSSN 163 (303)
Q Consensus 102 --------~dg~v~lWd~~~~~~~~~~~~~~~~h-~-~~v~~~--~~~~~~~~l~s~~------~D~~v~lWdl~~~~~~ 163 (303)
.+.+|.+||+.. .+....+.-- . .....+ .++|+++++..+. .+++|.+|......
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~----~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-- 291 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRK----RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-- 291 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTT----TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--
T ss_pred chhhhhhccCCEEEEEECCC----CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--
Confidence 368999999863 2223233211 1 122333 3599998876655 56678777653210
Q ss_pred cccccCccceeeece-eeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECC-
Q 022074 164 ASCNLGFRSYEWDYR-WMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLV- 240 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~- 240 (303)
|... ..+.+.....-..+.. -..+.+.. .......+|+|+++|.++. ..+.|.++|+.
T Consensus 292 -----------~~~~~vIdi~~~~v~~~lp~~--~~~f~~~~------~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 292 -----------WNAEKVIEIPAEPLEGNLPEI--LKPFKAVP------PLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp -----------EEEEEEEEECCEECCSSCCGG--GGGGTEEC------CCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred -----------eeEEEEEeCCCcccccccccc--ccccccCC------CceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 0000 0001100000000000 00000000 0001123678999888876 57899999985
Q ss_pred --CCeEEEEeecCC--------------CCeEEEEECCCCCeEEEEe
Q 022074 241 --SGEQVAALKYHT--------------SPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 241 --~~~~~~~~~~h~--------------~~I~~v~~sp~~~~las~s 271 (303)
+.+.+..+.... +....+++||||++|..+.
T Consensus 353 ~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 353 PFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 235555554220 1358899999999888887
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00025 Score=66.18 Aligned_cols=198 Identities=15% Similarity=0.104 Sum_probs=114.8
Q ss_pred ceEEEEE-c-CCCCEEEEee------------------CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEe
Q 022074 41 GIFSLKF-S-TDGRELVAGS------------------SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 41 ~v~~l~~-s-~~g~~l~sgs------------------~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
....+++ + |+++++++++ .++.+.+.|.++.+...++.--. .-..+..++ +++++++.
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt 212 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFST 212 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEE
Confidence 4778887 4 8999999884 35679999999987766654322 345566755 46676666
Q ss_pred cCCC---------------eEEEE-----------------------cCccccCCCcc-ceeecccccCeEEEEeCCCCC
Q 022074 101 SDDN---------------LCKVW-----------------------DRRCLNVKGKP-AGVLMGHLEGITFIDSRGDGR 141 (303)
Q Consensus 101 s~dg---------------~v~lW-----------------------d~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~ 141 (303)
+.+. .|.+. |.+.. .+.. ...+. -.....++.++|||+
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~--~~~~~~~~Ip-vg~~PhGv~~sPDGk 289 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE--ASSLFTRYIP-IANNPHGCNMAPDKK 289 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--GCCSSEEEEE-EESSCCCEEECTTSS
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc--CCceeEEEEe-cCCCceEEEEcCCCC
Confidence 6443 23333 32210 0111 11111 112345678999999
Q ss_pred EEEEEe-CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeC
Q 022074 142 YLISNG-KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 220 (303)
Q Consensus 142 ~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 220 (303)
+++.++ .+.+|.++|+.+.+....-.+... ........ .-...+...|++
T Consensus 290 ~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~----------------------~~v~~~v~-------vG~gP~h~aF~~ 340 (595)
T 1fwx_A 290 HLCVAGKLSPTVTVLDVTRFDAVFYENADPR----------------------SAVVAEPE-------LGLGPLHTAFDG 340 (595)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHHHSCCCGG----------------------GGEEECCB-------CCSCEEEEEECT
T ss_pred EEEEeCCCCCeEEEEECcccccccccccCcc----------------------cceEEEcC-------CCCCcceEEECC
Confidence 876555 789999999885321100000000 00000000 000112235888
Q ss_pred CCeEEEEEeCCCeEEEEECCC----------CeEEEEeecCCCCe-----EEEEECCCCCeEEEEeC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVS----------GEQVAALKYHTSPV-----RDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~----------~~~~~~~~~h~~~I-----~~v~~sp~~~~las~s~ 272 (303)
+|...++..-|+.|.+||+.+ .+.+..+..|-.|- ..+.++|||++|+++..
T Consensus 341 dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 341 RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 895555677899999999876 45677776665442 23356899999888764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0012 Score=61.63 Aligned_cols=212 Identities=14% Similarity=0.165 Sum_probs=122.1
Q ss_pred EEEEE---cCCCCEEEEeeC-CCeEEEEECCCCceEEEEec-ccCCeEEEEEcc-CCCcEEEEec---------------
Q 022074 43 FSLKF---STDGRELVAGSS-DDCIYVYDLEANKLSLRILA-HTSDVNTVCFGD-ESGHLIYSGS--------------- 101 (303)
Q Consensus 43 ~~l~~---s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~-~~~~~l~s~s--------------- 101 (303)
..+++ .+||+++.+... ++.|.+.|+++.+....+.- -......+++.. +++.+++.++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 45555 258888887665 45699999999886553322 224567777743 4566777664
Q ss_pred ---CCCeEEEEcCccccCCCcccee-ecccccCeEEEEeCCCCCEEEEEeCCC---------------cEEEEEcccccC
Q 022074 102 ---DDNLCKVWDRRCLNVKGKPAGV-LMGHLEGITFIDSRGDGRYLISNGKDQ---------------AIKLWDIRKMSS 162 (303)
Q Consensus 102 ---~dg~v~lWd~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~D~---------------~v~lWdl~~~~~ 162 (303)
.++.+.+.|.... +.... ..+- .-..++++++|+++++.+.+. .|.+.|......
T Consensus 170 ~~~~~~~vtvID~~t~----~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 170 VANYVNVFTAVDADKW----EVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp GGGEEEEEEEEETTTT----EEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccCceEEEEECCCC----eEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 2456777776421 11111 1111 223456789999988888653 355555432110
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccc--c-e-eeeEEE---eeeeeeeCCCeEEEEEe-CCCeE
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHS--V-L-RTLIRC---HFSPVYSTGQKYIYTGS-HDSCV 234 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~---~~~~~~s~~~~~latg~-~dg~i 234 (303)
. . +.++.... ..+..++... . . ...+.. .....++|||++++.++ .+.+|
T Consensus 244 ~--v-----------------~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~V 301 (595)
T 1fwx_A 244 A--I-----------------AAGDYQEL---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTV 301 (595)
T ss_dssp H--H-----------------HHTCSEEE---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred e--c-----------------cCCCeeEE---CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeE
Confidence 0 0 00000000 1122222222 0 0 011111 11235789999776655 78999
Q ss_pred EEEECCCCe------------EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 235 YVYDLVSGE------------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 235 ~iwd~~~~~------------~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.++|..+.+ .+..++. ......++|+|+|...++.-.|+++.+|+++.
T Consensus 302 sVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 302 TVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 999998653 3344432 24578999999996677888899999999864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.001 Score=64.03 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|.|+.||+.+|+.+-.++.+ .++....++..+.+++.++.||.++.||....
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG 506 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTG 506 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCC
Confidence 488999999999987776654 34555677788899999999999999997654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00081 Score=64.55 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=43.2
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|.|..||+.+++.+-.++ +..+++...++..+.+++.++.||.++.||....
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG 508 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG 508 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC
Confidence 789999999999876665 4456677778888888999999999999998644
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0026 Score=54.81 Aligned_cols=192 Identities=10% Similarity=0.038 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec--------------------ccCCeEEEEEccCCCcEEEEec
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--------------------HTSDVNTVCFGDESGHLIYSGS 101 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--------------------h~~~v~~l~~~~~~~~~l~s~s 101 (303)
-.++++.++|+.+.++..++.|..||..++.... +.. .......+++.++++++++ +.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v-~d 98 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI-VD 98 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE-EE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEE-EE
Confidence 3467788999878888889999999887765432 211 1134678888543455554 43
Q ss_pred CCCeEEEEcCccccCCCccceeec----cc-ccCeEEEEeCC-CCCEEEEEeCC-----------------CcEEEEEcc
Q 022074 102 DDNLCKVWDRRCLNVKGKPAGVLM----GH-LEGITFIDSRG-DGRYLISNGKD-----------------QAIKLWDIR 158 (303)
Q Consensus 102 ~dg~v~lWd~~~~~~~~~~~~~~~----~h-~~~v~~~~~~~-~~~~l~s~~~D-----------------~~v~lWdl~ 158 (303)
..+.+..+|.... ....+. +. ......+.+.+ +|++.++.... +.|..||..
T Consensus 99 ~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 99 CYYHLSVVGSEGG-----HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp TTTEEEEECTTCE-----ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred CCCCEEEEeCCCC-----EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 3445777775311 111121 11 12345667777 77666554321 223333221
Q ss_pred cccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEE-EEeCCCeEEEE
Q 022074 159 KMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY-TGSHDSCVYVY 237 (303)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-tg~~dg~i~iw 237 (303)
.. .+..+. ..........++++++.|. +-...+.|+++
T Consensus 174 ~~-----------------------------------~~~~~~------~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~ 212 (322)
T 2fp8_A 174 TK-----------------------------------ETTLLL------KELHVPGGAEVSADSSFVLVAEFLSHQIVKY 212 (322)
T ss_dssp TT-----------------------------------EEEEEE------EEESCCCEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred CC-----------------------------------EEEEec------cCCccCcceEECCCCCEEEEEeCCCCeEEEE
Confidence 00 000000 0000111234678887554 44667899999
Q ss_pred ECCCCe--EEEEeecCCCCeEEEEECCCCCeEEEEeC----------CCCEEEeecC
Q 022074 238 DLVSGE--QVAALKYHTSPVRDCSWHPSQPMLVSSSW----------DGDVVRWEFP 282 (303)
Q Consensus 238 d~~~~~--~~~~~~~h~~~I~~v~~sp~~~~las~s~----------Dg~i~~Wd~~ 282 (303)
++.... ....+....+ ...+++.++|++.++... .+.+..++..
T Consensus 213 ~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 213 WLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp ESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred ECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 987421 1112211223 788999999997776654 3556666654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.01 Score=49.39 Aligned_cols=196 Identities=9% Similarity=-0.001 Sum_probs=111.2
Q ss_pred ceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
...+++|+++++.|+.+. .++.|..+++.++.....+.........+++.+..+.++++-..++.|.+++....
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~----- 111 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT----- 111 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC-----
Confidence 467899999776666554 57789999998765433232222467888886655667767777889999886421
Q ss_pred cceeec-ccccCeEEEEeCCCCCEE-EEEeC--CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 120 PAGVLM-GHLEGITFIDSRGDGRYL-ISNGK--DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 120 ~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~--D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
....+. ........+++.+++..| ++... .+.|..+++.....
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~--------------------------------- 158 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--------------------------------- 158 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---------------------------------
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---------------------------------
Confidence 111121 112345678888865554 44432 35666666532100
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCC-eEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQ-KYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+.... ........+++++ .+.++-...+.|.++|.........+.. ......++.. .+.++++....+
T Consensus 159 --~~~~~~~-----~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 159 --RILAQDN-----LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp --EEEECTT-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTT
T ss_pred --EEEEECC-----CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCC
Confidence 0000000 0000112355654 4455556778999999975443333332 2334667664 344555555668
Q ss_pred CEEEeecCC
Q 022074 275 DVVRWEFPG 283 (303)
Q Consensus 275 ~i~~Wd~~~ 283 (303)
.|.++|...
T Consensus 230 ~v~~~d~~~ 238 (267)
T 1npe_A 230 SVIAMDLAI 238 (267)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeCCC
Confidence 898888753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0027 Score=55.82 Aligned_cols=222 Identities=7% Similarity=0.015 Sum_probs=109.2
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE 129 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~ 129 (303)
++..+++++.++.|..+|.++|+..-+.............. +..++.++.++.|..+|.+..+ ..-.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~----~~W~~~~~~~ 174 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGA----VKWTVNLDMP 174 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCC----EEEEEECCC-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCc----EEEEEeCCCC
Confidence 46678889999999999999998765444332222222221 3467778889999999975322 1111111100
Q ss_pred Ce-----EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeecee---eeCCC---CCccccCCCCCcce
Q 022074 130 GI-----TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW---MDYPP---QARDLKHPCDQSVA 198 (303)
Q Consensus 130 ~v-----~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~ 198 (303)
.. ..... .+..++.+..++.+..+|.+..+..............+... ....+ ............+.
T Consensus 175 ~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 175 SLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLT 252 (376)
T ss_dssp ----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEE
T ss_pred ceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEE
Confidence 00 01111 13467778888999999976543222211110000000000 00000 00000001111222
Q ss_pred EEecccc---eeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC-CCCeEEEEECCCCCeEEEEeCCC
Q 022074 199 TYKGHSV---LRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH-TSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 199 ~~~~~~~---~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h-~~~I~~v~~sp~~~~las~s~Dg 274 (303)
.++.... ..........+.. ++..+..++.++.+..+|..+++.+-..... ...+..... .+..|..++.+|
T Consensus 253 ~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g 328 (376)
T 3q7m_A 253 ALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEG 328 (376)
T ss_dssp EEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTS
T ss_pred EEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCC
Confidence 2221110 0000000111222 2446777888999999999999877555421 122222222 256777888899
Q ss_pred CEEEeecCCC
Q 022074 275 DVVRWEFPGN 284 (303)
Q Consensus 275 ~i~~Wd~~~~ 284 (303)
.+..+|....
T Consensus 329 ~l~~~d~~tG 338 (376)
T 3q7m_A 329 YLHWINVEDG 338 (376)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 9999997543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.014 Score=51.15 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=109.1
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecc---------cCCeEE-EEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAH---------TSDVNT-VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h---------~~~v~~-l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
.+..+++++.++.|..+|.++++..-+.... ...+.. ... . +..++.++.++.|..+|.+..+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~v~~~~g~l~a~d~~tG~---- 124 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--S-GGHVYIGSEKAQVYALNTSDGT---- 124 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--E-TTEEEEEETTSEEEEEETTTCC----
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--e-CCEEEEEcCCCEEEEEECCCCC----
Confidence 4677888889999999999999865443321 122222 222 2 3466778889999999975322
Q ss_pred cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCC--CCCccccCCCCCcc
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP--PQARDLKHPCDQSV 197 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 197 (303)
..-.............. .+..++.++.++.+..+|.+..+.............. .....+ .....+.......+
T Consensus 125 ~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~~~~~~v~~g~~~g~l 200 (376)
T 3q7m_A 125 VAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL--RGESAPTTAFGAAVVGGDNGRV 200 (376)
T ss_dssp EEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCCCEEETTEEEECCTTTEE
T ss_pred EEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee--cCCCCcEEECCEEEEEcCCCEE
Confidence 11111111110000011 1346778888999999998654332221111000000 000000 00000011111112
Q ss_pred eEEecccc-eeeeEE---------------EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC
Q 022074 198 ATYKGHSV-LRTLIR---------------CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261 (303)
Q Consensus 198 ~~~~~~~~-~~~~~~---------------~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s 261 (303)
..++.... ...... ....|... +..+..++.++.+..+|..+|+.+-.... .....+..
T Consensus 201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~- 275 (376)
T 3q7m_A 201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV- 275 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE-
T ss_pred EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE-
Confidence 22221100 000000 11122222 34567778899999999999987755432 23344443
Q ss_pred CCCCeEEEEeCCCCEEEeecCCC
Q 022074 262 PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 262 p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++..|..++.++.+..+|....
T Consensus 276 -~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 276 -DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp -ETTEEEEEETTCCEEEEETTTC
T ss_pred -ECCEEEEEcCCCeEEEEECCCC
Confidence 4566777778889998887543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00091 Score=64.96 Aligned_cols=116 Identities=12% Similarity=0.144 Sum_probs=66.8
Q ss_pred Cccc-ceEEEEEc-CCCCEEEEeeC-CC----eEEEEECCCC-ceEE-EEecccCCeEEEEEccCCCcEEEEecCC----
Q 022074 37 GYSF-GIFSLKFS-TDGRELVAGSS-DD----CIYVYDLEAN-KLSL-RILAHTSDVNTVCFGDESGHLIYSGSDD---- 103 (303)
Q Consensus 37 ~~~~-~v~~l~~s-~~g~~l~sgs~-Dg----~v~lwd~~~~-~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~s~d---- 103 (303)
+|+. .+.+.+|| |||++|+-+.. +| +|+++|+.++ .... .+. .....+.|+++ ++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspD-g~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPD-HTSLFYVTKDETLR 245 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSS-TTEEEEEEECTTCC
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecC-CCEEEEEEECCCCC
Confidence 5664 78899999 99998775432 22 5999999998 5321 111 11346789765 5555544443
Q ss_pred -CeEEEEcCccccCCCccceeecc-cccCeEEEEeCCCCCEEEEEeC---CCcEEEEEcc
Q 022074 104 -NLCKVWDRRCLNVKGKPAGVLMG-HLEGITFIDSRGDGRYLISNGK---DQAIKLWDIR 158 (303)
Q Consensus 104 -g~v~lWd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~---D~~v~lWdl~ 158 (303)
..|+++++.... ......+.. ...-...+.+++||++|+..+. ...|.++|+.
T Consensus 246 ~~~v~~~~lgt~~--~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 246 ENKVWRHVMGKLQ--SEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp EEEEEEEETTSCG--GGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred CCEEEEEECCCCc--hhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 257777764211 111122221 1223456789999998875542 3345555654
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.015 Score=48.34 Aligned_cols=178 Identities=11% Similarity=0.059 Sum_probs=103.8
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC--CCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~~~ 117 (303)
....+++++++..++.+ ...+.|.+++++.................+++.++.+.++++-.. .+.|..++...
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg---- 155 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG---- 155 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS----
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC----
Confidence 46789999976665554 456789999987654322222222456888887655655555543 46887777542
Q ss_pred Cccceeec-ccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 118 GKPAGVLM-GHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 118 ~~~~~~~~-~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.....+. ........+++++++.. +++....+.|..+|+...... .
T Consensus 156 -~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~----------~--------------------- 203 (267)
T 1npe_A 156 -TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR----------K--------------------- 203 (267)
T ss_dssp -CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE----------E---------------------
T ss_pred -CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE----------E---------------------
Confidence 1111221 12234567888887655 456666788998887521100 0
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC-CCeEEEEECCCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT-SPVRDCSWHPSQP 265 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~-~~I~~v~~sp~~~ 265 (303)
...+..... ..... ++.++++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 204 ---~~~~~~~P~-------gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 204 ---VLEGLQYPF-------AVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ---EEECCCSEE-------EEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ---EecCCCCce-------EEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 000000000 00111 34555555567899999999999888876443 2467888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0059 Score=58.24 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=66.3
Q ss_pred EEEEcC-CCCEEEEeeCCC-----------eEEEEECCCCceEE--EEe-cccCCeEEEEEccCCCcEEEEecC-CCeEE
Q 022074 44 SLKFST-DGRELVAGSSDD-----------CIYVYDLEANKLSL--RIL-AHTSDVNTVCFGDESGHLIYSGSD-DNLCK 107 (303)
Q Consensus 44 ~l~~s~-~g~~l~sgs~Dg-----------~v~lwd~~~~~~~~--~~~-~h~~~v~~l~~~~~~~~~l~s~s~-dg~v~ 107 (303)
++++.+ +|+.++.|+.+. .+.+||..+++... .+. .+......+++. .++++++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-CCCCEEEeCCCCCCceE
Confidence 455666 888888887643 58899998876321 121 233334445554 35788888884 55899
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CC-----CcEEEEEccc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KD-----QAIKLWDIRK 159 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D-----~~v~lWdl~~ 159 (303)
+||.... .......+..... -..+...++++.++.|| .+ ..+.+||...
T Consensus 269 ~yd~~t~--~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 269 LYDSSSD--SWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEEGGGT--EEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EecCcCC--ceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 9997522 1111111111111 12333456888889988 44 5788898754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.024 Score=47.31 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=119.2
Q ss_pred CCcccceEEEEEcCCCCEEEE-eeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 36 GGYSFGIFSLKFSTDGRELVA-GSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~s-gs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.|-...+..++|+|+++.|++ ...++.|...|+. ++...++. .-......+++. .++.++++.-.++.+.++++..
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECT
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCC
Confidence 455556999999998776665 6678889889987 66655543 222467788885 3455666666677888887542
Q ss_pred ccCCCccceee------cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc
Q 022074 114 LNVKGKPAGVL------MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR 187 (303)
Q Consensus 114 ~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (303)
... ....... .........+++.+.++.|.++..-....+|.++....... ... ....
T Consensus 101 ~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~----l~i-~~~~---------- 164 (255)
T 3qqz_A 101 NSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE----LHI-SKDK---------- 164 (255)
T ss_dssp TCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC----CEE-EECH----------
T ss_pred CCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc----eee-ecch----------
Confidence 211 0001111 11234578899999887776666555566666542110000 000 0000
Q ss_pred cccCCCCCcceEEecccceeeeEEEeeeeeee-CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCC---------CCeEE
Q 022074 188 DLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS-TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHT---------SPVRD 257 (303)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~---------~~I~~ 257 (303)
. +.+......... ..+. ..+.+++...+.+.+..+|.+ |+.+..+.-.. ..-..
T Consensus 165 ~-----------~~~~~~~~d~S~----l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEG 228 (255)
T 3qqz_A 165 A-----------LQRQFTLDDVSG----AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEG 228 (255)
T ss_dssp H-----------HHHTCCSSCCCE----EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEE
T ss_pred h-----------hccccccCCcee----EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCe
Confidence 0 000000000111 1122 246777778888999999975 55555543221 36789
Q ss_pred EEECCCCCeEEEEeCCCCEEEee
Q 022074 258 CSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 258 v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
|+|.++|++.++ ++-+.++++.
T Consensus 229 ia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 229 VAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEECTTCCEEEE-ETTTEEEEEE
T ss_pred eEECCCCCEEEE-cCCceEEEEE
Confidence 999999996666 6666555554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.032 Score=47.81 Aligned_cols=196 Identities=8% Similarity=0.102 Sum_probs=109.8
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc-----cCCeEEEEEccCCCcEEEEecC-------------
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-----TSDVNTVCFGDESGHLIYSGSD------------- 102 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~~~~l~s~s~------------- 102 (303)
...++++.+++..|+++...+.+..+|..++... .+... ....+.+++.+.++++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 4788999973344665655556888887765432 22211 1246778885415677665432
Q ss_pred ----CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 103 ----DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 103 ----dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
++.|..+|... .. ...+.........++++++++.| ++....+.|..|++..... .. ...
T Consensus 160 ~~~~~g~v~~~d~~~----~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~----~~~----- 224 (322)
T 2fp8_A 160 TSDKTGRLIKYDPST----KE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GT----AEV----- 224 (322)
T ss_dssp HTCCCEEEEEEETTT----TE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TC----EEE-----
T ss_pred ccCCCceEEEEeCCC----CE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-Cc----cce-----
Confidence 36677777531 11 11111112234567889998855 5556678899998753110 00 000
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC----------CCeEEEEECCCCeEEEE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH----------DSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~ 247 (303)
.....+ .. ...+.++|.+.++... .+.|..+|.. ++.+..
T Consensus 225 -------------------~~~~~g---P~-------gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~ 274 (322)
T 2fp8_A 225 -------------------LVKIPN---PG-------NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV 274 (322)
T ss_dssp -------------------EEECSS---EE-------EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE
T ss_pred -------------------EEeCCC---CC-------CeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE
Confidence 000000 00 0123456666555544 4678888874 777666
Q ss_pred eecCC----CCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 248 LKYHT----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 248 ~~~h~----~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+.... ..++.+++ .+++++++...++.|.+++++.
T Consensus 275 ~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 275 IPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 65432 35777777 5677788877888899998753
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.034 Score=46.68 Aligned_cols=156 Identities=10% Similarity=0.014 Sum_probs=92.4
Q ss_pred cccC--CeEEEEEccCCCcEEEEecC--CCeEEEEcCccccCCCccceeec--ccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 79 AHTS--DVNTVCFGDESGHLIYSGSD--DNLCKVWDRRCLNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 79 ~h~~--~v~~l~~~~~~~~~l~s~s~--dg~v~lWd~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.|.. ....+.|+++ +.++++.+. +++|++.|+.. ++....+. .+.. ...+++. .+++.++.-.++.+
T Consensus 16 p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~t----g~v~~~i~l~~~~f-geGi~~~-g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQT----GKVENIHKMDDSYF-GEGLTLL-NEKLYQVVWLKNIG 88 (266)
T ss_dssp ECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTT----CCEEEEEECCTTCC-EEEEEEE-TTEEEEEETTCSEE
T ss_pred ECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCC----CCEEEEEecCCCcc-eEEEEEe-CCEEEEEEecCCEE
Confidence 4543 3578889754 666665543 67999999863 33333321 1111 1233343 23445556678999
Q ss_pred EEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC
Q 022074 153 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 232 (303)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg 232 (303)
.++|....+..... .++ . ++. ...++|++.++++..++
T Consensus 89 ~viD~~t~~v~~~i--------------~~g-~----------------~~g-----------~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 89 FIYDRRTLSNIKNF--------------THQ-M----------------KDG-----------WGLATDGKILYGSDGTS 126 (266)
T ss_dssp EEEETTTTEEEEEE--------------ECC-S----------------SSC-----------CEEEECSSSEEEECSSS
T ss_pred EEEECCCCcEEEEE--------------ECC-C----------------CCe-----------EEEEECCCEEEEECCCC
Confidence 99998653321111 000 0 000 00223555555556789
Q ss_pred eEEEEECCCCeEEEEeecCC-----CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 233 CVYVYDLVSGEQVAALKYHT-----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.|+++|..+.+.+..+..-. ..++.+.|. ++...+....++.|.+-|.+..
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg 182 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDG 182 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTC
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCC
Confidence 99999999988877765321 247889998 7777777767789999887654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.041 Score=46.05 Aligned_cols=154 Identities=10% Similarity=0.043 Sum_probs=94.0
Q ss_pred cccC--CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccC-eEEEEeCCCCCEEEEEeCCCcEEEE
Q 022074 79 AHTS--DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG-ITFIDSRGDGRYLISNGKDQAIKLW 155 (303)
Q Consensus 79 ~h~~--~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~D~~v~lW 155 (303)
.|+. ....+.|. .+.++++.+.+|.|+.+|++.. +....+.. ... -..+++.. +++....-.++.+.++
T Consensus 50 phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tg----kv~~~~l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 50 PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESA----QPVWMERL-GNIFAEGLASDG-ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCS----SCSEEEEC-TTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCC----cEEeEECC-CCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence 5553 45678885 3678888999999999998643 33333211 111 12244433 3455566678999999
Q ss_pred EcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 156 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
|....+...... +++.+ - ..+++++.|+....++.|+
T Consensus 122 D~~Tl~~~~ti~--------------~~~eG----------------w-------------GLt~Dg~~L~vSdGs~~l~ 158 (268)
T 3nok_A 122 SGMPPQRERTTR--------------YSGEG----------------W-------------GLCYWNGKLVRSDGGTMLT 158 (268)
T ss_dssp ETTTTEEEEEEE--------------CSSCC----------------C-------------CEEEETTEEEEECSSSEEE
T ss_pred ECCcCcEEEEEe--------------CCCce----------------e-------------EEecCCCEEEEECCCCEEE
Confidence 987543322111 10000 0 0112345555555689999
Q ss_pred EEECCCCeEEEEeecCC-----CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 236 VYDLVSGEQVAALKYHT-----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|..+.+.+..+.... ..++.+.|. +|+..|..-.+..|.+-|.+..
T Consensus 159 ~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 159 FHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp EECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC
T ss_pred EEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 99999999887775322 256788887 7777766666778888886543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.014 Score=55.91 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=35.4
Q ss_pred CCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-eEEEEECCCCC-eEEEEe
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP-VRDCSWHPSQP-MLVSSS 271 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~-I~~v~~sp~~~-~las~s 271 (303)
..+.+++.|+.|+.++.||.++|+.+..++....- -.-+.+..+|+ +++.++
T Consensus 467 t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 34667888999999999999999998887654311 12234456776 444444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.027 Score=47.04 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=90.5
Q ss_pred cccC--CeEEEEEccCCCcEEEEecCCC--eEEEEcCccccCCCccceeecccccCe-EEEEeCCCCCEEEEEeCCCcEE
Q 022074 79 AHTS--DVNTVCFGDESGHLIYSGSDDN--LCKVWDRRCLNVKGKPAGVLMGHLEGI-TFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 79 ~h~~--~v~~l~~~~~~~~~l~s~s~dg--~v~lWd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.|+. ....+.|. + +.++.+.+.+| +|+.+|++. ++............ ..++.. .+++.+..-.++.+.
T Consensus 38 phd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~T----gkv~~~~~l~~~~FgeGit~~-g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIES----GKTLQQIELGKRYFGEGISDW-KDKIVGLTWKNGLGF 110 (262)
T ss_dssp ECCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTT----CCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEE
T ss_pred cCCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCC----CcEEEEEecCCccceeEEEEe-CCEEEEEEeeCCEEE
Confidence 5554 34678885 3 57777887766 999999863 33333332211111 123332 233444555689999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
++|....+....... +.. | ..++++++.|+....++.
T Consensus 111 v~D~~t~~~~~ti~~--------------~~e----------------G-------------~glt~dg~~L~~SdGs~~ 147 (262)
T 3nol_A 111 VWNIRNLRQVRSFNY--------------DGE----------------G-------------WGLTHNDQYLIMSDGTPV 147 (262)
T ss_dssp EEETTTCCEEEEEEC--------------SSC----------------C-------------CCEEECSSCEEECCSSSE
T ss_pred EEECccCcEEEEEEC--------------CCC----------------c-------------eEEecCCCEEEEECCCCe
Confidence 999875443221111 000 0 001224454555555788
Q ss_pred EEEEECCCCeEEEEeecC--C---CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQVAALKYH--T---SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~~~~~~~h--~---~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+++|..+.+.+..+... . ..++.+.|. +|+..|..-.+..|.+-|.+..
T Consensus 148 i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG 202 (262)
T 3nol_A 148 LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETG 202 (262)
T ss_dssp EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC
T ss_pred EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCC
Confidence 999999999888776542 1 346678886 7777776666778888876543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0049 Score=52.65 Aligned_cols=214 Identities=13% Similarity=0.062 Sum_probs=105.5
Q ss_pred EEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeec
Q 022074 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLM 125 (303)
Q Consensus 46 ~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~ 125 (303)
....+| .+.+++.++.|..|| .+++...........+..+... .++ .+..++.+ +..+|.. . ...-.+.
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~--l~~~d~~-g----~~~~~~~ 94 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG-KDG-TIYFGSDK--VYAINPD-G----TEKWRFD 94 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET-TTT-EECCSSCE--EEEECCC-G----GGGGGSC
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe-cCC-cEEEecCc--EEEECCC-C----cEEEEEE
Confidence 344444 577788888899999 7777543333233334555553 334 45556555 8888742 1 1111111
Q ss_pred ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccc
Q 022074 126 GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSV 205 (303)
Q Consensus 126 ~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (303)
..........+. +..+..++.++.+..+|.. ............. ....................+..++....
T Consensus 95 ~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~----~~~~~~~~~g~l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 95 TKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAI----YATPIVSEDGTIYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp C-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCC----CSCCEECTTSCEEEECTTSEEEEECTTSC
T ss_pred CCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCce----eeeeEEcCCCEEEEEcCCCEEEEECCCCC
Confidence 111111111222 4467778888999999875 2211111100000 00000000111111111122333332211
Q ss_pred eeeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 206 LRTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 206 ~~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
...... ....+....++ .+..++ +.+..+| .+++.+..+......+.++...+++.+.+ ++.++.+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~ 242 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAINP 242 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEECT
T ss_pred EeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEECC
Confidence 110000 11123333444 488777 7889999 67777766666666788999988876544 556899999975
Q ss_pred C
Q 022074 282 P 282 (303)
Q Consensus 282 ~ 282 (303)
.
T Consensus 243 ~ 243 (330)
T 3hxj_A 243 D 243 (330)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.17 Score=44.65 Aligned_cols=195 Identities=8% Similarity=0.003 Sum_probs=108.4
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
...+++|.+.++.|+.. ...+.|+.++++++.....+.........+++.+..++++++-...+.|.+.++... .
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~----~ 192 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA----H 192 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC----S
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC----c
Confidence 36789999766655544 467789999988765433333223345677775555667777777788888876411 1
Q ss_pred cceeecccccCeEEEEeCCCCCEE-EEEeCC-CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 120 PAGVLMGHLEGITFIDSRGDGRYL-ISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D-~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
....+.........+++.|.+..| ++-... +.|...++......
T Consensus 193 ~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---------------------------------- 238 (386)
T 3v65_B 193 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---------------------------------- 238 (386)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----------------------------------
T ss_pred eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE----------------------------------
Confidence 111222223445677788755544 444344 56666665321000
Q ss_pred eEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
.+.... +.......+++ ++++.++-...+.|+.+|+........+.........+++ ..+.++++-...+.|
T Consensus 239 -~~~~~~-----~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 311 (386)
T 3v65_B 239 -IIADTH-----LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 311 (386)
T ss_dssp -EEECSS-----CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred -EEEECC-----CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeE
Confidence 000000 00001122443 3455555667788999998643322223333445678888 455667777677888
Q ss_pred EEee
Q 022074 277 VRWE 280 (303)
Q Consensus 277 ~~Wd 280 (303)
...+
T Consensus 312 ~~~~ 315 (386)
T 3v65_B 312 NSAN 315 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.091 Score=43.39 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=90.0
Q ss_pred cccC--CeEEEEEccCCCcEEEEecCC--CeEEEEcCccccCCCccceeecccccCe-EEEEeCCCCCEEEEEeCCCcEE
Q 022074 79 AHTS--DVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKGKPAGVLMGHLEGI-TFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 79 ~h~~--~v~~l~~~~~~~~~l~s~s~d--g~v~lWd~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
.|+. .+-.+.|.. +.++.+.+.+ +.|+.+|+.. ++......-..... ..+++. .+++....-.++.+.
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~t----gkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLET----GRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGF 88 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTT----CCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEE
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCC----CCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEE
Confidence 5653 566888853 5677777775 4999999863 33333322111110 122332 244555566789999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
++|...++....... + ++. + ...++++.|+....++.
T Consensus 89 v~D~~tl~~~~ti~~--------------~------------------~~G---------w--glt~dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 89 VYDLATLTPRARFRY--------------P------------------GEG---------W--ALTSDDSHLYMSDGTAV 125 (243)
T ss_dssp EEETTTTEEEEEEEC--------------S------------------SCC---------C--EEEECSSCEEEECSSSE
T ss_pred EEECCcCcEEEEEeC--------------C------------------CCc---------e--EEeeCCCEEEEECCCCe
Confidence 999875443222111 0 000 0 01123444444455889
Q ss_pred EEEEECCCCeEEEEeecCC-----CCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQVAALKYHT-----SPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+++|..+.+.+..++... ..++.+.|. +|+..|..-.+..|.+-|.+..
T Consensus 126 l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG 180 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASG 180 (243)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC
T ss_pred EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCC
Confidence 9999999998887775422 356778876 6776666656777777776543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.03 Score=52.58 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=36.1
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCC-eEEEEECCCCC-eEEEEeC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP-VRDCSWHPSQP-MLVSSSW 272 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~-I~~v~~sp~~~-~las~s~ 272 (303)
+.+++.|+.||.++.||.++|+++-.++....- -.-+.|..+|+ +++..+.
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 456777999999999999999998887654321 12256778887 4554443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.21 Score=47.02 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEECCCCC-eEEEEeC
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQP-MLVSSSW 272 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~-~I~~v~~sp~~~-~las~s~ 272 (303)
.+.++..++.|+.++.+|.++|+++-.++.... ...-+.|..+|+ ++++.+.
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 355677799999999999999999877764321 112245667887 4544443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.035 Score=52.87 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=44.5
Q ss_pred eEEEEEcCCCCEEEEeeC-CCeEEEEECCCCceEEEEecccCCe-EEEEEccCCCcEEEEec-CC-----CeEEEEcCc
Q 022074 42 IFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGS-DD-----NLCKVWDRR 112 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~l~s~s-~d-----g~v~lWd~~ 112 (303)
..++++..+|+.++.|+. +..+.+||..+++....-.-+.... .+++.. +++++++.|+ .+ ..+.+||..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCC
Confidence 345677889999999984 5589999998876432111111111 233332 3577888888 34 568889875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.019 Score=50.76 Aligned_cols=91 Identities=13% Similarity=-0.043 Sum_probs=61.6
Q ss_pred eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec----------CCCeEEEEcCccccCCCccceeeccc----
Q 022074 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS----------DDNLCKVWDRRCLNVKGKPAGVLMGH---- 127 (303)
Q Consensus 62 ~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s----------~dg~v~lWd~~~~~~~~~~~~~~~~h---- 127 (303)
+|.++|..+++...++..-..+ .+.++|+ ++.++.+. .+++|.+||... .+....+..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T----~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVT----FLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTT----CCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCC----CCEEEEEECCCccc
Confidence 8899999999988777654445 6889765 44444443 478999999863 3333333211
Q ss_pred ---ccCeEEEEeCCCCCEEEEEeC--CCcEEE--EEccc
Q 022074 128 ---LEGITFIDSRGDGRYLISNGK--DQAIKL--WDIRK 159 (303)
Q Consensus 128 ---~~~v~~~~~~~~~~~l~s~~~--D~~v~l--Wdl~~ 159 (303)
...-..+.++|||++++.+.. +..+.+ +|+..
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 122346678999999988874 467888 88753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.23 Score=42.02 Aligned_cols=222 Identities=12% Similarity=0.003 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC-CC-eEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN-LCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~-dg-~v~lWd~~~~~~~~ 118 (303)
....++|+++|+.+++-..++.|..||..++. . ...........+++.+ +++++++... ++ .|..+|... +
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~-~~~~~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~----g 105 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q-IHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD----G 105 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E-EEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT----S
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCce-E-EEEeCCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCC----C
Confidence 36789999999866666678899999887643 2 2223334678888864 4666655433 22 455555432 1
Q ss_pred ccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC-C----cccc--cCccceeeeceeeeCCCCCcccc
Q 022074 119 KPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS-N----ASCN--LGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 119 ~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~-~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
+...... ........+...+++..+++...++.|..+|...... . .... ........ ...+ .++...+.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~-pngi--s~dg~~ly 182 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA-ANGL--KRFGNFLY 182 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS-EEEE--EEETTEEE
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc-CCCc--CcCCCEEE
Confidence 1111110 0111123333344454455555678888888642100 0 0000 00000000 0000 11111110
Q ss_pred --CCCCCcceEEeccc--ce--eeeE-E--EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE--EeecCCCCeEEEE
Q 022074 191 --HPCDQSVATYKGHS--VL--RTLI-R--CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA--ALKYHTSPVRDCS 259 (303)
Q Consensus 191 --~~~~~~~~~~~~~~--~~--~~~~-~--~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~--~~~~h~~~I~~v~ 259 (303)
......+..++-.. .. .... . ......+.++|.+.++....+.|.++|.. ++... .+.......++++
T Consensus 183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 00111222222110 00 0010 0 01112356788877777778899999975 65432 3333335689999
Q ss_pred EC---CCCCeEEEEeCC
Q 022074 260 WH---PSQPMLVSSSWD 273 (303)
Q Consensus 260 ~s---p~~~~las~s~D 273 (303)
|. |+++.|..++..
T Consensus 262 ~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECCSTTTTTEEEEEECT
T ss_pred EecccCCCCEEEEECCC
Confidence 99 887755544433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.36 Score=43.37 Aligned_cols=214 Identities=11% Similarity=0.122 Sum_probs=108.3
Q ss_pred ceEEEEEcCCCCEEEEeeCCC-----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg-----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
....++++++|+ |+.+...+ .+..++...+...............+++.+..+.++++-..++.|+.+|...
T Consensus 183 ~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-- 259 (433)
T 4hw6_A 183 QCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-- 259 (433)
T ss_dssp CEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT--
T ss_pred CccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC--
Confidence 478899999999 55444321 2333433322211111112234566777654677776767788899888641
Q ss_pred CCCccceee-c-ccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 116 VKGKPAGVL-M-GHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 116 ~~~~~~~~~-~-~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
+.....+ . +....-..++++++++ ++++-...+.|+.+|+......... ...+. . ...... .
T Consensus 260 --g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~-----~~~~a--g-~~g~~g--~--- 324 (433)
T 4hw6_A 260 --GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAV-----PYIVC--G-QHSSPG--W--- 324 (433)
T ss_dssp --CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCC-----CEEEE--E-CTTCCC--C---
T ss_pred --CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCc-----EEEEE--e-cCCCCc--c---
Confidence 1110111 1 1112223688999998 5566667788888886431110000 00000 0 000000 0
Q ss_pred CCCcceEEecccceeeeEEEeeeeee---------eCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC------------
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVY---------STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH------------ 251 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h------------ 251 (303)
. ++... ...+.......+ ..++.+.++-...++|+.++. +|... ++.+.
T Consensus 325 ----~---dg~~~-~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~ 394 (433)
T 4hw6_A 325 ----V---DGMGT-GARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGE 394 (433)
T ss_dssp ----B---CEEGG-GSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEE
T ss_pred ----C---CCccc-ceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCc
Confidence 0 00000 000000001122 345667777777888999985 56433 33221
Q ss_pred ------CCCeEEEEEC-CCCCeEEEEeCCCCEEEeecC
Q 022074 252 ------TSPVRDCSWH-PSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 252 ------~~~I~~v~~s-p~~~~las~s~Dg~i~~Wd~~ 282 (303)
-.....++++ +++.++++=..+..|+..+++
T Consensus 395 ~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 395 LRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1246789999 677777777777888877753
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.32 Score=42.25 Aligned_cols=193 Identities=9% Similarity=0.004 Sum_probs=108.7
Q ss_pred eEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcc
Q 022074 42 IFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 42 v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~ 120 (303)
..+++|++.++.|+.. ...+.|+.+++.++.....+.........+++.+..++++++-...+.|.+.++.. ..
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG-----~~ 149 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-----AH 149 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----CS
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC-----Cc
Confidence 6789999766666554 46778999998876543333322344567777555566777777788899888642 11
Q ss_pred cee-ecccccCeEEEEeCCCCCE-EEEEeCC-CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 121 AGV-LMGHLEGITFIDSRGDGRY-LISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 121 ~~~-~~~h~~~v~~~~~~~~~~~-l~s~~~D-~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
... +.........+++.|.+.. +.+-... +.|...++...... . +. . . .+
T Consensus 150 ~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~---------------------~~-~-~-~~ 202 (349)
T 3v64_C 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---I---------------------IA-D-T-HL 202 (349)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---E---------------------SC-C-S-SC
T ss_pred eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---E---------------------EE-E-C-CC
Confidence 122 2222344567788875444 4554444 66666665421000 0 00 0 0 00
Q ss_pred eEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i 276 (303)
.......+++ ++++.++-...+.|..+|+........+.........+++ ..+.++++-...+.|
T Consensus 203 -------------~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 203 -------------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp -------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred -------------CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 0001123454 4455555567788999998643322223333445678888 455666666667777
Q ss_pred EEee
Q 022074 277 VRWE 280 (303)
Q Consensus 277 ~~Wd 280 (303)
...+
T Consensus 269 ~~~~ 272 (349)
T 3v64_C 269 NSAN 272 (349)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.38 Score=41.87 Aligned_cols=193 Identities=13% Similarity=0.211 Sum_probs=103.4
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC---CCc---EEE-EecC--CCeEEEEcCccccCCCcc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE---SGH---LIY-SGSD--DNLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~---~l~-s~s~--dg~v~lWd~~~~~~~~~~ 120 (303)
....++.-..++-+.+||+ +|++...+.. +.++.+..-+. .++ +++ +.-. +.+|++|++... . .+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~--~-~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK--N-GT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT--T-CC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC--C-Cc
Confidence 3445665566778999999 6666555532 45565544221 111 223 3333 579999965211 1 11
Q ss_pred ceeecc------cc-cCeEEEEe--CCC-CC-EEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 121 AGVLMG------HL-EGITFIDS--RGD-GR-YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 121 ~~~~~~------h~-~~v~~~~~--~~~-~~-~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
...+.. -. ..+..++. ++. +. +++..+.++.+..|++...... .. ..
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-~~-------~~-------------- 170 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-YI-------SG-------------- 170 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-CE-------EE--------------
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-cc-------cc--------------
Confidence 111100 01 23333444 553 43 6788888899999988532110 00 00
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECC-----CCeEEEEee-cC-CCCeEEEEE--
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLV-----SGEQVAALK-YH-TSPVRDCSW-- 260 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~-----~~~~~~~~~-~h-~~~I~~v~~-- 260 (303)
..+..+.-....+ .| +..+....|..+-++.-|+.+|.+ +++.+..+. ++ ...+..|+.
T Consensus 171 -----~lVR~f~lgsq~E---gc----vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~ 238 (355)
T 3amr_A 171 -----KKVRAFKMNSQTE---GM----AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYY 238 (355)
T ss_dssp -----EEEEEEECSSCEE---EE----EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEE
T ss_pred -----eEEEEecCCCCcc---eE----EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEe
Confidence 0111111111111 11 123445678888888888888855 355665542 22 247888888
Q ss_pred CCCCC-eEEEEe-CCCCEEEeecC
Q 022074 261 HPSQP-MLVSSS-WDGDVVRWEFP 282 (303)
Q Consensus 261 sp~~~-~las~s-~Dg~i~~Wd~~ 282 (303)
.++++ +|+.++ .+.++.+||.+
T Consensus 239 ~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 239 AADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCCCEEEEEEcCCCCEEEEEECC
Confidence 56666 555555 67899999975
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.18 Score=47.07 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEECCCCCe-EEEEeCC
Q 022074 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPM-LVSSSWD 273 (303)
Q Consensus 222 ~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~-~I~~v~~sp~~~~-las~s~D 273 (303)
+..++.++.||.++.+|.++|+++-.++.... .-.-+.+..++++ +++.+..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence 44567789999999999999999887764321 1122346678874 4444444
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.08 Score=50.56 Aligned_cols=210 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred CCEEEEeeCCCeEEEEECCCCceEEEEecccCC----------e-EEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 51 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------V-NTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 51 g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
+..+++++.++.|.-+|..+|+..-+....... + ..+.+. +..++.++.|+.|..+|.+..+...+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeee
Confidence 567888888999999999999876554322110 0 112221 34677788899999999753322111
Q ss_pred cceeecccc--cCeEE-EEeCCCCCEEEEEeC------CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCc---
Q 022074 120 PAGVLMGHL--EGITF-IDSRGDGRYLISNGK------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQAR--- 187 (303)
Q Consensus 120 ~~~~~~~h~--~~v~~-~~~~~~~~~l~s~~~------D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 187 (303)
.. ..... ..+.. -.+ .++ .++.+.. ++.|..+|.+..+....... ....+...
T Consensus 143 ~~--~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~-----------~~~~p~~~~~~ 207 (668)
T 1kv9_A 143 QQ--TTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT-----------VPGDPALPYEH 207 (668)
T ss_dssp EE--CSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES-----------SCCCTTSCCSS
T ss_pred ec--cCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc-----------cCCCCCccccc
Confidence 00 00000 00100 000 133 4444432 58899999875443222111 00000000
Q ss_pred -cc--cCCC--CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC-------------------eEEEEECCCCe
Q 022074 188 -DL--KHPC--DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS-------------------CVYVYDLVSGE 243 (303)
Q Consensus 188 -~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg-------------------~i~iwd~~~~~ 243 (303)
.+ .... ...+....+... .-..+.+.++...++.+..++ .|..+|.++|+
T Consensus 208 ~~~~~~~~~~~g~~~w~~~~gg~------~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~ 281 (668)
T 1kv9_A 208 PELREAAKTWQGDQYWKLGGGGT------VWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK 281 (668)
T ss_dssp HHHHHHHTTCCSSCHHHHCEECC------CCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred cccccccccCCccceeeeCCCCc------cccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence 00 0000 000000000000 001234556566677776665 49999999999
Q ss_pred EEEEeec--CC-------CCeEEEEECCCCC---eEEEEeCCCCEEEeecCCC
Q 022074 244 QVAALKY--HT-------SPVRDCSWHPSQP---MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~--h~-------~~I~~v~~sp~~~---~las~s~Dg~i~~Wd~~~~ 284 (303)
.+=.+.. |. .++.......+++ .++.++.+|.+.++|....
T Consensus 282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG 334 (668)
T 1kv9_A 282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG 334 (668)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC
Confidence 8766543 32 2333333334665 7889999999999986543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.6 Score=41.85 Aligned_cols=113 Identities=10% Similarity=0.071 Sum_probs=68.0
Q ss_pred ceEEEEEcCCCCEEEEeeCC-C----eEEEEECCCCceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 41 GIFSLKFSTDGRELVAGSSD-D----CIYVYDLEANKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~D-g----~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
....|+|+++|++|+++... + .+..++....... ..+. .......+++.+..+.++++-..++.|..++....
T Consensus 180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 46789999999977666542 1 3444444332211 1222 22345677786656777777777889999886421
Q ss_pred cCCCccceeec-ccccCeEEEEeCCCCC-EEEEEeCCCcEEEEEcc
Q 022074 115 NVKGKPAGVLM-GHLEGITFIDSRGDGR-YLISNGKDQAIKLWDIR 158 (303)
Q Consensus 115 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~D~~v~lWdl~ 158 (303)
....... +....-..++++++++ ++++....+.|..++..
T Consensus 259 ----~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 259 ----ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ----EEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ----cEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 1101111 1112356788999999 55666678889998865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.47 Score=44.30 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=38.2
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.++.||..+++.+-.++.. .++........+..++.++.|+.++.||....
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 4689999999999987666432 33333333445667777899999999997643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.67 Score=39.48 Aligned_cols=188 Identities=8% Similarity=-0.018 Sum_probs=99.9
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeE
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~ 132 (303)
+|+.+.. ..|+..|+.+..... +.........+.|.+..+.++.+-..++.|..++.............+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEe-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 459999998876543 33444567889997655667777777889999886521000011112222223345
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 133 FIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 133 ~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
.+++.+ .++++++-...+.|.+.|+...... .+ .. .+....
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--------~~------~~-------------------~~~~~P----- 122 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--------TL------FR-------------------ENGSKP----- 122 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEE--------EE------EE-------------------CTTCCE-----
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceE--------EE------EE-------------------CCCCCc-----
Confidence 666765 4455566677788888876421100 00 00 000000
Q ss_pred EeeeeeeeC-CCeEEEEEeCC-CeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecCC
Q 022074 212 CHFSPVYST-GQKYIYTGSHD-SCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 212 ~~~~~~~s~-~~~~latg~~d-g~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~~ 283 (303)
....+.| ++.++.+.... +.|...+.. |+....+ ...-...+.++|+|++.. .++-+..+.|...|..+
T Consensus 123 --~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 123 --RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp --EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 0112344 34444444333 678888874 3333322 222346789999987654 44444567888888765
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.74 Score=39.92 Aligned_cols=194 Identities=8% Similarity=-0.040 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
..|.+..++ .+|+.+. ...|+..++....... +.........++|.+..+.++.+-..++.|..++.... ...
T Consensus 36 ~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~-~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~~ 108 (349)
T 3v64_C 36 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----NVE 108 (349)
T ss_dssp SCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----SCE
T ss_pred CcccccccC-ceeEeec-ccceEEEeCCCCeeEE-eecCCCceEEEEEeccccEEEEEeccCCceEEEecCCC----Cce
Confidence 345555553 3444443 4458888887665433 33333557889997666666667677888988886421 111
Q ss_pred eeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
............+++.+ .+.++++-...+.|.+.++...... .. ..
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~---------~l-------~~----------------- 155 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK---------VL-------LW----------------- 155 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---------EE-------EC-----------------
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE---------EE-------Ee-----------------
Confidence 11211223345666665 4555567667788888876421100 00 00
Q ss_pred ecccceeeeEEEeeeeeeeC-CCeEEEEEeCC-CeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCC-eEEEEeCCCCE
Q 022074 201 KGHSVLRTLIRCHFSPVYST-GQKYIYTGSHD-SCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQP-MLVSSSWDGDV 276 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~-~~~~latg~~d-g~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~-~las~s~Dg~i 276 (303)
.+-... ....+.| ++.++.+-... +.|+..+..... ...+ ...-...+.++|+|++. +.++-...+.|
T Consensus 156 ~~l~~P-------~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I 227 (349)
T 3v64_C 156 QSLEKP-------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227 (349)
T ss_dssp TTCSCE-------EEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCc-------ceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEE
Confidence 000000 0112333 34555555555 788888875322 2222 22234578899998655 44444456678
Q ss_pred EEeecCC
Q 022074 277 VRWEFPG 283 (303)
Q Consensus 277 ~~Wd~~~ 283 (303)
..+++.+
T Consensus 228 ~~~~~dG 234 (349)
T 3v64_C 228 ERANLDG 234 (349)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 8888765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.73 Score=39.75 Aligned_cols=202 Identities=9% Similarity=0.001 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecc-----cC--CeEEEEEc--cCCCcEEEEec----------
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-----TS--DVNTVCFG--DESGHLIYSGS---------- 101 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h-----~~--~v~~l~~~--~~~~~~l~s~s---------- 101 (303)
--++.|.+....+..++ ..++|..||...+......... +. .+..+.|. .+.+.++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 45678988666677766 7999999999866544332222 11 34678883 23366666433
Q ss_pred ---CCCeEEEEcCccccCCCccce--eeccc-----------ccCeEEEEeCCCCCEEEEEeCC-CcEEEEEcccccCCc
Q 022074 102 ---DDNLCKVWDRRCLNVKGKPAG--VLMGH-----------LEGITFIDSRGDGRYLISNGKD-QAIKLWDIRKMSSNA 164 (303)
Q Consensus 102 ---~dg~v~lWd~~~~~~~~~~~~--~~~~h-----------~~~v~~~~~~~~~~~l~s~~~D-~~v~lWdl~~~~~~~ 164 (303)
.+..|..+|+... .+++... .+... ......++..++|+..++++.- +.|...+......
T Consensus 95 ~~~g~~~v~~~Dl~~~-~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~-- 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLS-ENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV-- 171 (334)
T ss_dssp CSSSCCEEEEEESSCC-TTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE--
T ss_pred ccCCCCEEEEEcCCcC-CCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE--
Confidence 2577888997510 0122111 11111 1236778889999999998877 6655554331100
Q ss_pred ccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE
Q 022074 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ 244 (303)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~ 244 (303)
..|. +..+.... .. ...-.+++|++..|++....|.+..+|+.+...
T Consensus 172 --------~~~~---~~~~~~~~---------~~-------------G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~ 218 (334)
T 2p9w_A 172 --------STFA---WESGNGGQ---------RP-------------GYSGITFDPHSNKLIAFGGPRALTAFDVSKPYA 218 (334)
T ss_dssp --------EEEE---ECCCCSSS---------CC-------------SCSEEEEETTTTEEEEESSSSSEEEEECSSSSC
T ss_pred --------eeee---ecCCCccc---------cc-------------CcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcc
Confidence 0010 01110000 00 001124678888888776699999999875432
Q ss_pred --EEEee--cC---CCCeEEE-EECCCCCe-EEEEeCCCCEEEee
Q 022074 245 --VAALK--YH---TSPVRDC-SWHPSQPM-LVSSSWDGDVVRWE 280 (303)
Q Consensus 245 --~~~~~--~h---~~~I~~v-~~sp~~~~-las~s~Dg~i~~Wd 280 (303)
+. +. +. -.....+ .--.+|+. |++.+..+.+.+..
T Consensus 219 ~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 219 WPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp CCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred eeec-ccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEEC
Confidence 21 11 21 1123333 22236665 77776666655554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.17 Score=48.91 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=41.4
Q ss_pred eeeeeCCCeEEEEEe---CCCeEEEEECCCCe-EE--EEe-ecCCCCeEEEEECCCCCeEEEEeCC--C--CEEEeecC
Q 022074 215 SPVYSTGQKYIYTGS---HDSCVYVYDLVSGE-QV--AAL-KYHTSPVRDCSWHPSQPMLVSSSWD--G--DVVRWEFP 282 (303)
Q Consensus 215 ~~~~s~~~~~latg~---~dg~i~iwd~~~~~-~~--~~~-~~h~~~I~~v~~sp~~~~las~s~D--g--~i~~Wd~~ 282 (303)
.+.+|+|+++|+... ....|+++|+.+++ .. ..+ .....+..++.|+..+.+++.+..+ + .|..+++.
T Consensus 275 ~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 275 FMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETT
T ss_pred EEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCC
Confidence 355789999887655 34568999998752 12 333 3344566777776655566665554 3 44455543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.55 Score=42.09 Aligned_cols=66 Identities=12% Similarity=0.185 Sum_probs=46.8
Q ss_pred eeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCeEEEEECCCCC-eEEEEeCCCCEEEeecCC
Q 022074 218 YST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHPSQP-MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 218 ~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~-h~~~I~~v~~sp~~~-~las~s~Dg~i~~Wd~~~ 283 (303)
+++ ++.++++-..++.|+.+|...++....... .......++|+|+++ ++++-...+.|..++..+
T Consensus 233 vdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 233 THPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp ECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 456 677777777789999999987664222221 223568999999999 566666778899888654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=1.2 Score=41.94 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=22.7
Q ss_pred eEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 223 KYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 223 ~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
+.++.++.+|.+++.|.++|+.+-..+
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 567888999999999999999876554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.67 E-value=1 Score=39.61 Aligned_cols=193 Identities=8% Similarity=-0.026 Sum_probs=100.6
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
|.+..+ ..+|+.+. ...|+.+++..+.... +.........++|.+..+.++++-..++.|..++.... .....
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~----~~~~~ 153 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTL-LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----NVEEV 153 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCCCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----CEEEE
T ss_pred ECCccc-cceeEeec-CccceeeccCCCcEEE-EecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC----CcEEE
Confidence 444444 33444443 3568888887765443 33334567889997666667767677888988886421 11111
Q ss_pred ecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEec
Q 022074 124 LMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG 202 (303)
Q Consensus 124 ~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (303)
+.........+++.+ .+.++++-...+.|.+.++...... . . . ..+
T Consensus 154 ~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--------~-l-------~-----------------~~~ 200 (386)
T 3v65_B 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--------V-L-------L-----------------WQS 200 (386)
T ss_dssp ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--------E-E-------E-----------------CSS
T ss_pred EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--------E-e-------e-----------------cCC
Confidence 211122334555665 3455566666677776665321000 0 0 0 000
Q ss_pred ccceeeeEEEeeeeeeeC-CCeEEEEEeCC-CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC-eEEEEeCCCCEEEe
Q 022074 203 HSVLRTLIRCHFSPVYST-GQKYIYTGSHD-SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP-MLVSSSWDGDVVRW 279 (303)
Q Consensus 203 ~~~~~~~~~~~~~~~~s~-~~~~latg~~d-g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~-~las~s~Dg~i~~W 279 (303)
-... ....+.| ++.++.+-... +.|+..+.............-...+.++|+|++. +.++-+..+.|..+
T Consensus 201 l~~P-------~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 201 LEKP-------RAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp CSCE-------EEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCCC-------cEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 0000 0112333 34444554444 7788888754332222222334578899997655 44554556678888
Q ss_pred ecCC
Q 022074 280 EFPG 283 (303)
Q Consensus 280 d~~~ 283 (303)
++.+
T Consensus 274 d~dG 277 (386)
T 3v65_B 274 NLDG 277 (386)
T ss_dssp CTTS
T ss_pred eCCC
Confidence 7764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.58 E-value=1 Score=38.89 Aligned_cols=64 Identities=5% Similarity=0.066 Sum_probs=43.9
Q ss_pred eeCCCeEEEEEeCC-CeEEEEECCCCeEEEEeecC------CCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 218 YSTGQKYIYTGSHD-SCVYVYDLVSGEQVAALKYH------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 218 ~s~~~~~latg~~d-g~i~iwd~~~~~~~~~~~~h------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
..++|..-++++.- +.|...+... +.+..+... ..-.+.++++|+++.|+....+|.|..+|+.
T Consensus 144 vD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 144 QDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp ECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred ECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 34567777777777 7777777653 333322111 1236799999999988888779999999976
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.46 E-value=1.4 Score=39.59 Aligned_cols=197 Identities=11% Similarity=0.096 Sum_probs=108.0
Q ss_pred eEEEEEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC---C-eEEEEcCcccc
Q 022074 42 IFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---N-LCKVWDRRCLN 115 (303)
Q Consensus 42 v~~l~~s~~--g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d---g-~v~lWd~~~~~ 115 (303)
-..|+++++ +..|+.+...+.|+.+|+.++.... +.........+++.+ +++++++-..+ . .+...+.. ..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~-~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRA-SG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGG-GT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECC-CC
Confidence 458999984 4556666554889999998876543 444445688999965 46655554321 1 23333321 11
Q ss_pred CCCccceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (303)
... ...+. .......+++.+ ++.++++-..++.|+.+|........ .+ .... .
T Consensus 218 ~~~--~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-----------~~--~~~~----------~ 271 (433)
T 4hw6_A 218 FTE--RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-----------EE--VMMD----------T 271 (433)
T ss_dssp TCC--EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-----------EE--EECS----------C
T ss_pred eec--ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-----------EE--eccC----------C
Confidence 110 01111 122234556777 67766676677888888764211000 00 0000 0
Q ss_pred CcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECC--CCeE--EEEeecC---------------CCC
Q 022074 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLV--SGEQ--VAALKYH---------------TSP 254 (303)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~--~~~~--~~~~~~h---------------~~~ 254 (303)
.. ..+...++++++ +.++-...++|+.++.. ++.. ...+.+. -..
T Consensus 272 --------~~-------~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~ 336 (433)
T 4hw6_A 272 --------KG-------SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG 336 (433)
T ss_dssp --------CS-------SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS
T ss_pred --------CC-------CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC
Confidence 00 001134677787 45555667899998865 3321 1122211 124
Q ss_pred eEEEEE---------CCCCCeEEEEeCCCCEEEeecC
Q 022074 255 VRDCSW---------HPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 255 I~~v~~---------sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
...+++ .++++++++-..++.|+.++..
T Consensus 337 P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 337 PNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp EEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred CccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 678999 7788888887778888888753
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.37 E-value=1.2 Score=38.19 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCCeEEEEECCCCc-eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeC
Q 022074 59 SDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137 (303)
Q Consensus 59 ~Dg~v~lwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 137 (303)
....|+..+++... ..............+.|.+..+.++.+-..++.|..++..... .....+.........+++.
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~---~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE---SVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS---CCCEEEEECCSCCCEEEEE
T ss_pred ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC---ceEEEEcCCCCCccEEEEE
Confidence 34579999998764 1112222223466888876556677777778889888864221 1111222222334456666
Q ss_pred C-CCCEEEEEeCCCcEEEEEcc
Q 022074 138 G-DGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 138 ~-~~~~l~s~~~D~~v~lWdl~ 158 (303)
+ .+.++++-...+.|.++++.
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~d 109 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLD 109 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETT
T ss_pred cCCCeEEEEECCCCEEEEEECC
Confidence 5 45566676777888888865
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=2.4 Score=41.00 Aligned_cols=195 Identities=11% Similarity=0.100 Sum_probs=109.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec--------ccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA--------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
..|.++...++|+ |-.|+.++-+..||..++........ ....|.+++.. .+++.|..|+.++-+..+|.
T Consensus 357 ~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 357 NVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp SSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEET
T ss_pred CeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeC
Confidence 4589999888876 55577776699999887764332111 12467888774 34663556777677888986
Q ss_pred ccccCCCccceeec-----ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 112 RCLNVKGKPAGVLM-----GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 112 ~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
+.. + ...+. .+...|.++...++|.+.+.. . +.+.+||...... . .+....
T Consensus 435 ~~~----~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~----~-------------~~~~~~ 490 (795)
T 4a2l_A 435 NSG----Q-VENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSF----T-------------TIEKEK 490 (795)
T ss_dssp TTC----C-EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEE----E-------------ECCBCT
T ss_pred CCC----c-EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeE----E-------------Eccccc
Confidence 421 1 11111 123568888887778755544 4 5688888643110 0 000000
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-------cCCCCeEEEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-------YHTSPVRDCS 259 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-------~h~~~I~~v~ 259 (303)
.... +.. . .+. .....+++.+.+ |+. +-+..||..+++. .+. .+...|.++.
T Consensus 491 ------~~~~---~~~-~----~i~---~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~ 549 (795)
T 4a2l_A 491 ------DGTP---VVS-K----QIT---TLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIY 549 (795)
T ss_dssp ------TCCB---CCC-C----CEE---EEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEE
T ss_pred ------cccc---cCC-c----eEE---EEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEE
Confidence 0000 000 0 000 011234555444 334 4588899877665 322 2345799999
Q ss_pred ECCCCCeEEEEeCCCCEEEeecCC
Q 022074 260 WHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 260 ~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..++|++.++.. + -|..||...
T Consensus 550 ~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 550 EASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp ECTTSCEEEEES-S-CEEEEETTT
T ss_pred ECCCCCEEEEeC-C-CceeECCCC
Confidence 999999666554 3 677888643
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=1.6 Score=40.87 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 230 HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.+|.|+-||+.+|+.+=..+.. .++..-.....+.+++.++.|+.++.||....
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred CcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCC
Confidence 4789999999999987555433 23332222334677888999999999997543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.01 E-value=1.8 Score=38.32 Aligned_cols=104 Identities=7% Similarity=0.008 Sum_probs=62.0
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeE
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~ 132 (303)
+|+.+ ....|+..++....... +......+..++|.+..+.++.+-..++.|+.+++.....................
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEe-ccceeEEEccCCcceeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 44444 34679999998765443 34445678899997655666666667888988886421100111222222334456
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEEcc
Q 022074 133 FIDSRG-DGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 133 ~~~~~~-~~~~l~s~~~D~~v~lWdl~ 158 (303)
.+++.+ .++++++-...+.|.+.|+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCC
Confidence 677765 45566676677788777764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=3.2 Score=40.37 Aligned_cols=104 Identities=7% Similarity=-0.005 Sum_probs=60.6
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeE
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT 132 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~ 132 (303)
+|+.. ....|+..++...... .+......+..+++....+.++++-...+.|+.+++............+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~-~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcce-eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 34443 3445888888766543 334445667888886655667777777888888886421111112222222334455
Q ss_pred EEEeCCCC-CEEEEEeCCCcEEEEEcc
Q 022074 133 FIDSRGDG-RYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 133 ~~~~~~~~-~~l~s~~~D~~v~lWdl~ 158 (303)
.+++.+.+ +++++-...+.|.+.++.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 67776555 556677777888888875
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.31 Score=46.75 Aligned_cols=196 Identities=9% Similarity=0.008 Sum_probs=96.9
Q ss_pred ceEEEEEcCCCCEEEEee-CCCeEEEEECCC----CceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAGS-SDDCIYVYDLEA----NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+.+|+|.+.+..|+... ..+.|+.+++.+ ......+.........+++....++++++-...+.|.+.++..
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg-- 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-- 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS--
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC--
Confidence 356788998777666654 457899998875 2211111111123455666434456666666678898888642
Q ss_pred CCCccceee-cccccCeEEEEeCCCCCEE-EEEeCC-CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 116 VKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 116 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-~s~~~D-~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
.....+ .........+++.+.+..| ++.... +.|...++......
T Consensus 485 ---~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~----------------------------- 532 (699)
T 1n7d_A 485 ---VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----------------------------- 532 (699)
T ss_dssp ---CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-----------------------------
T ss_pred ---CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-----------------------------
Confidence 111222 1112234456677654433 333222 44444443210000
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las 269 (303)
.+.... +.......++++ +++.++-...+.|..+|+........+. ........+++..+ .++++
T Consensus 533 ------~l~~~~-----l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywt 600 (699)
T 1n7d_A 533 ------SLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWT 600 (699)
T ss_dssp ------EESCSS-----CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEE
T ss_pred ------EEEeCC-----CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEE
Confidence 000000 000011224443 4555556677889999986433222222 11223455666543 56667
Q ss_pred EeCCCCEEEeecC
Q 022074 270 SSWDGDVVRWEFP 282 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~ 282 (303)
....+.|..++..
T Consensus 601 d~~~~~V~~~d~~ 613 (699)
T 1n7d_A 601 DIINEAIFSANRL 613 (699)
T ss_dssp CSTTTCEEEEETT
T ss_pred eCCCCeEEEEEcc
Confidence 6777888888753
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.96 Score=43.34 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=92.3
Q ss_pred EEEEEcCCCCEE-EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC-CeEEEEcCccccCCCcc
Q 022074 43 FSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD-NLCKVWDRRCLNVKGKP 120 (303)
Q Consensus 43 ~~l~~s~~g~~l-~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v~lWd~~~~~~~~~~ 120 (303)
..|++.+.+..| ++-...+.|.+++++.......+.........+++.+..+.++++-... +.|...++.. ..
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-----~~ 530 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-----VD 530 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-----CC
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-----CC
Confidence 457777544444 4444567899999876543322222223456777765555555544333 6777766531 11
Q ss_pred ceee-cccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 121 AGVL-MGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 121 ~~~~-~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
...+ ......-..++++++ +.++++-+..+.|..+|+...... .+ ... ...+.++.
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~--------~~------~~~---~~~~~~P~----- 588 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK--------TI------LED---EKRLAHPF----- 588 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE--------EE------CCC---SSSCSSCC-----
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE--------EE------Eec---CCcCCCce-----
Confidence 1111 111223446778875 455666667778888887421100 00 000 00000000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
...+. .+.++++....+.|..+|..+|+.+..+.......++|++.+.
T Consensus 589 ----------------glavd-~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 589 ----------------SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp ----------------CCEEE-TTEEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred ----------------EeEEE-CCEEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence 00011 2355666677889999998888887776544334566655443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.77 E-value=2.5 Score=34.97 Aligned_cols=113 Identities=13% Similarity=0.169 Sum_probs=71.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCC---CceEEEEe-------cccCCeEEEEEccCCCcEEEEecCCCeE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGSDDNLC 106 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~---~~~~~~~~-------~h~~~v~~l~~~~~~~~~l~s~s~dg~v 106 (303)
..+.++-.|+|+|+++.|.++.......||..+. ........ .+......+++.|..+++++....+..+
T Consensus 118 ~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L 197 (255)
T 3qqz_A 118 PTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRAL 197 (255)
T ss_dssp CCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred cccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeE
Confidence 4567789999999998888877665556665541 11111111 1234678999988888888888889999
Q ss_pred EEEcCccccCCCccceee--c-cc------ccCeEEEEeCCCCCEEEEEeCCCcEEEEEc
Q 022074 107 KVWDRRCLNVKGKPAGVL--M-GH------LEGITFIDSRGDGRYLISNGKDQAIKLWDI 157 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~--~-~h------~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl 157 (303)
..+|.. +++...+ . +. -..-..+++.++|+++++ +.-. ++|-.
T Consensus 198 ~~~d~~-----g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f 249 (255)
T 3qqz_A 198 QEVTLV-----GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRF 249 (255)
T ss_dssp EEECTT-----CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEE
T ss_pred EEEcCC-----CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEE
Confidence 999864 2222221 1 11 123467889999986666 4444 44443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.73 E-value=5.2 Score=38.51 Aligned_cols=196 Identities=12% Similarity=0.077 Sum_probs=105.2
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE---ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNV 116 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~ 116 (303)
..|.++...++|. |-.|+.++-+..||..++...... ......|.+++.. .++.+. .|+.++-+..+|.+..
T Consensus 363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d-~~g~lW-igt~~~Gl~~~~~~~~-- 437 (781)
T 3v9f_A 363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKD-SEGNLW-FGTYLGNISYYNTRLK-- 437 (781)
T ss_dssp SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEEC-TTSCEE-EEETTEEEEEECSSSC--
T ss_pred cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEEC-CCCCEE-EEeccCCEEEEcCCCC--
Confidence 4588888888776 555665555889988765432110 1123467788763 345555 4666667888885321
Q ss_pred CCccceeec---ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 117 KGKPAGVLM---GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 117 ~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
+ ...+. .....|.++...+++.+. .|.. +.+..+|....... . ........ + .
T Consensus 438 --~-~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~--------~-------~~~~~~~~-~--~- 493 (781)
T 3v9f_A 438 --K-FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVI--------H-------HYDTSNSQ-L--L- 493 (781)
T ss_dssp --E-EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCC--------E-------EECTTTSS-C--S-
T ss_pred --c-EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEE--------e-------cccCcccc-c--c-
Confidence 1 11111 123568888777777644 4444 56888886532110 0 00000000 0 0
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec----CCCCeEEEEECCCCCeEEE
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY----HTSPVRDCSWHPSQPMLVS 269 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~----h~~~I~~v~~sp~~~~las 269 (303)
...+ . .....+++.+.+ |+.++-+..+|..+++. ..+.. ....|.++...+++++.++
T Consensus 494 ~~~i-------------~---~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 494 ENFV-------------R---SIAQDSEGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp CSCE-------------E---EEEECTTCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred ccee-------------E---EEEEcCCCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 0000 0 011234555444 45434478899877654 33321 2357899999999987665
Q ss_pred EeCCCCEEEeecCC
Q 022074 270 SSWDGDVVRWEFPG 283 (303)
Q Consensus 270 ~s~Dg~i~~Wd~~~ 283 (303)
.. +|.+..||...
T Consensus 556 T~-~Glv~~~d~~~ 568 (781)
T 3v9f_A 556 TG-EGLVCFPSARN 568 (781)
T ss_dssp ET-TEEEEESCTTT
T ss_pred EC-CCceEEECCCC
Confidence 54 56547787643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=93.61 E-value=3 Score=35.50 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=105.8
Q ss_pred ceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceE-EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLS-LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
...+++|.+.++.|+ +-...+.|..+++.++... ..+...-.....+++.+..++++++-...+.|.++++..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG----- 110 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG----- 110 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC-----
Confidence 356899998655554 4456778999998776421 122222234567777545566777777788999988642
Q ss_pred ccceee-cccccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 119 KPAGVL-MGHLEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 119 ~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
.....+ .........+++.+.+..|.-.. ..+.|...++.....
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--------------------------------- 157 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--------------------------------- 157 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC---------------------------------
T ss_pred CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe---------------------------------
Confidence 112222 22334456777776544444333 245566555431100
Q ss_pred cceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG 274 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg 274 (303)
..+-... +.......+++ ++++..+-...+.|+.+|+........+.........+++. .+.++.+-...+
T Consensus 158 --~~~~~~~-----l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~ 229 (318)
T 3sov_A 158 --FIIINSE-----IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTH 229 (318)
T ss_dssp --EEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTT
T ss_pred --EEEEECC-----CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCC
Confidence 0000000 00011223555 44555555678889999986433222223233456777774 345566666677
Q ss_pred CEEEeecC
Q 022074 275 DVVRWEFP 282 (303)
Q Consensus 275 ~i~~Wd~~ 282 (303)
.|...+..
T Consensus 230 ~V~~~~~~ 237 (318)
T 3sov_A 230 SILACNKY 237 (318)
T ss_dssp EEEEEETT
T ss_pred eEEEEECC
Confidence 78888763
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.05 E-value=5.2 Score=36.53 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=118.2
Q ss_pred ceEEEEE-------cCCCCEEEEeeCCC-------eEEEEECCC-CceE-----EEEecccCCeEEEEEccCCCcEEEEe
Q 022074 41 GIFSLKF-------STDGRELVAGSSDD-------CIYVYDLEA-NKLS-----LRILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 41 ~v~~l~~-------s~~g~~l~sgs~Dg-------~v~lwd~~~-~~~~-----~~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
+...|+| +++|++|++....+ .|.+++... +... ..+.. ......++.++..+.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEE
Confidence 5789999 99999777776654 266666444 2221 12221 23456777876667788888
Q ss_pred cCCCeEEEEcCc-------cccCC--Ccc-----c-eeec-ccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccCC
Q 022074 101 SDDNLCKVWDRR-------CLNVK--GKP-----A-GVLM-GHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSN 163 (303)
Q Consensus 101 s~dg~v~lWd~~-------~~~~~--~~~-----~-~~~~-~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~ 163 (303)
..++.|..+|+. ..... ..+ . ..+. +....-..+++++++++ +++-...+.|+.+|.......
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~ 345 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKE 345 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcce
Confidence 889999999975 11110 000 0 1111 11223467899999994 566667788888775421100
Q ss_pred cccccCccceeeeceeeeCCCCCccccCCCCCc--ceEEecccceeeeEEEeeeeeee-------CCCeEEEEEeCCCeE
Q 022074 164 ASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS--VATYKGHSVLRTLIRCHFSPVYS-------TGQKYIYTGSHDSCV 234 (303)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s-------~~~~~latg~~dg~i 234 (303)
... ...+.. ...... .. +.. .+.+. ... .. .... .++.+.++-....+|
T Consensus 346 ~~~---~~~~aG-----~~g~~G--~~---DG~~~~a~f~-----~P~-~g---v~vd~~~~~~~~~g~lyVaD~~N~rI 403 (496)
T 3kya_A 346 FIT---PYNFVG-----GYKQSG--YR---DDVGTEARMN-----NPC-QG---VFVKNPDYTGEEEYDFYFVDRLNFCV 403 (496)
T ss_dssp ECC---CEEEEE-----BTTBCC--CB---CCBGGGCBCS-----SEE-EE---EEEECTTCCSSCCEEEEEEEGGGTEE
T ss_pred ecc---cEEecC-----CCCCCc--cc---CCcccccccC-----CCe-EE---EEEccccccccCCCeEEEEECCCCEE
Confidence 000 000000 000000 00 000 00000 000 00 0011 345666777778889
Q ss_pred EEEECCCCeEEEEeecC------------------------CCCeEEEEECCC-CCeEEEEeCCCCEEEeecCCC
Q 022074 235 YVYDLVSGEQVAALKYH------------------------TSPVRDCSWHPS-QPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 235 ~iwd~~~~~~~~~~~~h------------------------~~~I~~v~~sp~-~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+.++ .+|. +.++.+. -.....|+++++ +.++++=..+..|+.+++.+.
T Consensus 404 r~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 404 RKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp EEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred EEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 9998 4564 3333221 124679999997 888888888899999998754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=92.95 E-value=6.9 Score=37.70 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=113.4
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-------ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-------HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
..|.++...++|.. ..|+.+| |.+||..++........ ....|.++... .++.+. .|+.++-|..|+..
T Consensus 263 ~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g~lW-igt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 263 NYIRSLAMDSQNRL-WIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQGGMW-LGTYFGGLNYYHPI 338 (795)
T ss_dssp SBEEEEEECTTSCE-EEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTSCEE-EEESSSCEEEECGG
T ss_pred CeEEEEEEcCCCCE-EEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCcCEE-EEECCCCeEEeCCC
Confidence 46999999988874 4455565 89999887764432111 12468888773 445554 56666778888753
Q ss_pred cccCCCccceeec-------ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCC
Q 022074 113 CLNVKGKPAGVLM-------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQ 185 (303)
Q Consensus 113 ~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (303)
... ...+. -....|.++...++|. |..|..++-|..||...... .. ....+.
T Consensus 339 ~~~-----~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~--------~~-------~~~~~~ 397 (795)
T 4a2l_A 339 RNR-----FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF--------TS-------YTLQED 397 (795)
T ss_dssp GGS-----SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE--------EE-------ECCC--
T ss_pred ccc-----ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE--------EE-------EecCCC
Confidence 211 11111 1234588888877776 55577777899998653110 00 000000
Q ss_pred CccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-----cCCCCeEEEEE
Q 022074 186 ARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPVRDCSW 260 (303)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-----~h~~~I~~v~~ 260 (303)
.... ......+. +.....++.+|-.|..++-|..+|..+++.. .+. .+...|.++..
T Consensus 398 ~~~~-~l~~~~v~----------------~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~ 459 (795)
T 4a2l_A 398 ESAR-GIGSNNIK----------------AVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILP 459 (795)
T ss_dssp -----CCSCSCEE----------------EEEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEE
T ss_pred Cccc-CCCCccEE----------------EEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEE
Confidence 0000 00000000 1112345663556777777999999887643 332 23457999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.+++++.+... +-|.+|+...
T Consensus 460 d~~g~lwigt~--~Gl~~~~~~~ 480 (795)
T 4a2l_A 460 DGEGNLWLGTL--SALVRFNPEQ 480 (795)
T ss_dssp CSSSCEEEEES--SCEEEEETTT
T ss_pred CCCCCEEEEec--CceeEEeCCC
Confidence 99998666554 4578888653
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=92.85 E-value=4.7 Score=35.51 Aligned_cols=196 Identities=9% Similarity=0.010 Sum_probs=104.8
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCC----ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+.+|+|++.++.|+.. ...+.|+.+++... .....+.........+++....+++.++-...+.|.+.++...
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~- 191 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV- 191 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC-
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC-
Confidence 57899999876666555 45678888888752 2222222233456778885445667777777889988886421
Q ss_pred CCCccceeecccccCeEEEEeCCCCCEE-EEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 116 VKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 116 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
.....+.........+++.|.+..| .+-.. .+.|...++......
T Consensus 192 ---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~------------------------------ 238 (400)
T 3p5b_L 192 ---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY------------------------------ 238 (400)
T ss_dssp ---SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE------------------------------
T ss_pred ---ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE------------------------------
Confidence 1112222233446677887754444 44322 356666665321000
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEeec--CCCCeEEEEECCCCCeEEEE
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALKY--HTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~--h~~~I~~v~~sp~~~~las~ 270 (303)
.+.... +.......++++ +++..+-...+.|..+|+........... .......++. ..+.++.+-
T Consensus 239 -----~~~~~~-----l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd 307 (400)
T 3p5b_L 239 -----SLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTD 307 (400)
T ss_dssp -----EEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEE
T ss_pred -----EEEECC-----CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEec
Confidence 000000 000011224443 44445555678899999864332222222 2234567777 344566677
Q ss_pred eCCCCEEEeec
Q 022074 271 SWDGDVVRWEF 281 (303)
Q Consensus 271 s~Dg~i~~Wd~ 281 (303)
...+.|..++.
T Consensus 308 ~~~~~V~~~~~ 318 (400)
T 3p5b_L 308 IINEAIFSANR 318 (400)
T ss_dssp SSSCSEEEEES
T ss_pred CCCCeEEEEEc
Confidence 77788888873
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=92.77 E-value=3.8 Score=34.29 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=43.7
Q ss_pred eCCCe-EEEEEeCCCeEEEEECCC-CeE--EEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 219 STGQK-YIYTGSHDSCVYVYDLVS-GEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 219 s~~~~-~latg~~dg~i~iwd~~~-~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
+++++ +.++-...+.|+.+|+.. ++. ...+.. ......++++++|+++++....+.|.+++..+
T Consensus 175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G 242 (306)
T 2p4o_A 175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 242 (306)
T ss_dssp EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence 45555 445556788999999864 321 111211 13467899999999888888889999998654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.73 E-value=1.2 Score=39.80 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-----------E-EEEec------ccCCeEEEEEccCC--CcEEEEe
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-----------S-LRILA------HTSDVNTVCFGDES--GHLIYSG 100 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-----------~-~~~~~------h~~~v~~l~~~~~~--~~~l~s~ 100 (303)
.|..+..||+|++||..+.. +|.|.+++.+.. . ..+.- ....|..+.|+|-. +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 36779999999999988655 699999984320 1 11111 23579999998743 4588888
Q ss_pred cCCCeEEEEcCccccCCCccceeec---------ccccCeEEEEeCCCCCEEEEEe--CCCcEEEE
Q 022074 101 SDDNLCKVWDRRCLNVKGKPAGVLM---------GHLEGITFIDSRGDGRYLISNG--KDQAIKLW 155 (303)
Q Consensus 101 s~dg~v~lWd~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~l~s~~--~D~~v~lW 155 (303)
..|++||+||+... ...|. .+. .....|.+++|..++-.|.... .+|-|.-.
T Consensus 146 tsD~~Ir~yDl~~s--~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNS--QEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCT--TSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccC--CCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999998631 11222 111 1235677888888765555544 66666653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=4.4 Score=34.27 Aligned_cols=194 Identities=7% Similarity=-0.005 Sum_probs=103.4
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCC---ceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEAN---KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~---~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
...+++|+++++.|+.. ...+.|..+++.+. .....+. ........+++.+..+++.++-..++.|.+.|...
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-- 108 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-- 108 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC--
Confidence 36789999876655554 45688999998761 2222222 22234577887544566666767788999988641
Q ss_pred CCCcccee-ecccccCeEEEEeCCCCCEE-EEEeCC-CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 116 VKGKPAGV-LMGHLEGITFIDSRGDGRYL-ISNGKD-QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 116 ~~~~~~~~-~~~h~~~v~~~~~~~~~~~l-~s~~~D-~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
..... ..........+++.|.+..| ++.... +.|...++.....
T Consensus 109 ---~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------------------------------ 155 (316)
T 1ijq_A 109 ---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------------------------ 155 (316)
T ss_dssp ---SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------------------------
T ss_pred ---CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------------------------------
Confidence 11112 22223456677788755544 443332 5566665431100
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEe-ec--CCCCeEEEEECCCCCeEE
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAAL-KY--HTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~-~~--h~~~I~~v~~sp~~~~la 268 (303)
..+.... +.......++++ +++.++-...+.|..+|..... ...+ .. .......+++. .+.+++
T Consensus 156 -----~~~~~~~-----~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~ 223 (316)
T 1ijq_A 156 -----YSLVTEN-----IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFW 223 (316)
T ss_dssp -----EEEECSS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred -----EEEEECC-----CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEE
Confidence 0000000 000011224443 4455555667899999986432 2222 21 22346778884 466677
Q ss_pred EEeCCCCEEEeec
Q 022074 269 SSSWDGDVVRWEF 281 (303)
Q Consensus 269 s~s~Dg~i~~Wd~ 281 (303)
+-...+.|...+.
T Consensus 224 ~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 224 TDIINEAIFSANR 236 (316)
T ss_dssp EETTTTEEEEEET
T ss_pred EECCCCeEEEEeC
Confidence 7767788888875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.10 E-value=9.2 Score=37.12 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=64.8
Q ss_pred ceEEEEEcCCCCEEEE-eeCCCeEEEEECCCCc----eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 41 GIFSLKFSTDGRELVA-GSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~s-gs~Dg~v~lwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+.+|+|.+.+..|+. -...+.|+.+++.... ....+.........|++....++++++-...+.|.+.++..
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-- 502 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-- 502 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC--
Confidence 4678999986555554 4456788888887531 12222223345667887545556777777788999888642
Q ss_pred CCCccceee-cccccCeEEEEeCCCCCEE-EEEeCC-CcEEEEEcc
Q 022074 116 VKGKPAGVL-MGHLEGITFIDSRGDGRYL-ISNGKD-QAIKLWDIR 158 (303)
Q Consensus 116 ~~~~~~~~~-~~h~~~v~~~~~~~~~~~l-~s~~~D-~~v~lWdl~ 158 (303)
.....+ .........|++.+....| ++-... +.|...++.
T Consensus 503 ---~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 503 ---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp ---SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred ---CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 222222 2233456788888764444 444232 556666653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=6.5 Score=34.15 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=41.7
Q ss_pred eeeeeCCCeEEEEE-eCCCeEEEEECCC-CeE--EEEeecCCCCeEEEEECC-CCCeEEEEeCC-CCEEEee
Q 022074 215 SPVYSTGQKYIYTG-SHDSCVYVYDLVS-GEQ--VAALKYHTSPVRDCSWHP-SQPMLVSSSWD-GDVVRWE 280 (303)
Q Consensus 215 ~~~~s~~~~~latg-~~dg~i~iwd~~~-~~~--~~~~~~h~~~I~~v~~sp-~~~~las~s~D-g~i~~Wd 280 (303)
...+|||++.|..+ +..+.|+.|++.. ++. ...+. .....-.++..+ +|++.+++..+ +.+..|+
T Consensus 225 Gia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred cceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 34688999766665 5688999999863 432 22332 235677889999 59887766544 2333344
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=6.6 Score=34.11 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=31.9
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCC
Q 022074 232 SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPG 283 (303)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~ 283 (303)
|.++.+|.. + +..+...-...+.++||||++.| ++-+..+.|..|++..
T Consensus 203 g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 203 SFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 566666653 2 22222223457999999999754 4555678899999863
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.18 E-value=6.8 Score=33.79 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=36.1
Q ss_pred CCeEEEEEeCCCeEEEEECCCCeEEEE--e-ecCCCCeEEEEECCCCCeEEEEe
Q 022074 221 GQKYIYTGSHDSCVYVYDLVSGEQVAA--L-KYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~~~~~~~--~-~~h~~~I~~v~~sp~~~~las~s 271 (303)
+++++++.-..+.|...+++.++.... + ..-...+.++++.|||.++++..
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence 577888777888888888876544322 2 22235799999999999776543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=90.53 E-value=7.3 Score=33.04 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=97.7
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
..++.+.+.+++..++++ .+|.|.. ..+.++..... ..+...+..+.+.+ ++.+++.+...+..+-+|.. ....
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~g--G~tW 196 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPG--QTAW 196 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTT--CSSC
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCC--CCce
Confidence 457788887766655554 5665422 23335444333 33455788888865 46666666544444445521 1111
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.+. .......+..+.+.+++..+ ..+.++.+++.+... ...|... ..+. + +....
T Consensus 197 ~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~------------G~tW~~~--~~~~----~--~~~~~-- 251 (327)
T 2xbg_A 197 EPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN------------SENWGEL--LSPL----R--RNSVG-- 251 (327)
T ss_dssp EEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE------------EEEECCC--BCTT----S--SCCSC--
T ss_pred eEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCC------------CCeeEec--cCCc----c--cCCcc--
Confidence 112 12234567778788887655 455677776663210 0011100 0000 0 00000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK---YHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~---~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
. ....+.+++.+++.+ .+|.+ ++..+.|+.=..+. .+...+.++.|.++++ ++.++.+|.
T Consensus 252 ----------~----~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~ 314 (327)
T 2xbg_A 252 ----------F----LDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGI 314 (327)
T ss_dssp ----------E----EEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTE
T ss_pred ----------e----EEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCce
Confidence 0 011233455655554 46766 34444454322232 2335688999976554 556667898
Q ss_pred EEEeec
Q 022074 276 VVRWEF 281 (303)
Q Consensus 276 i~~Wd~ 281 (303)
+..++-
T Consensus 315 i~~~~~ 320 (327)
T 2xbg_A 315 LLRYVT 320 (327)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 887775
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=90.38 E-value=9.8 Score=34.25 Aligned_cols=225 Identities=12% Similarity=0.187 Sum_probs=119.0
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
+.-.+|..+.+|.=. ..++.|||+++........ ....|.-=.|-.+ +.|+-.+ +..|+-|++.. ...|...
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~-~~e~VvfWkWis~--~~l~lVT-~taVyHWsi~~---~s~P~kv 141 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISL--NTVALVT-DNAVYHWSMEG---ESQPVKM 141 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEEEET--TEEEEEC-SSEEEEEESSS---SCCCEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee-cCCCceEEEecCC--CeEEEEc-CCeeEEecccC---CCCchhh
Confidence 355788888777654 6789999999987554333 2346666677543 3444333 44899999853 3456666
Q ss_pred eccccc----CeEEEEeCCCCCEEEEEe-------CCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC---ccc
Q 022074 124 LMGHLE----GITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA---RDL 189 (303)
Q Consensus 124 ~~~h~~----~v~~~~~~~~~~~l~s~~-------~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 189 (303)
+..|.. .|.....+++.+.++-.| -.|.+.+|...+.... .+....-.|. ....+... ..+
T Consensus 142 FdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---~ieGhaa~F~--~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 142 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---PIEGHAASFA--QFKMEGNAEESTLF 216 (494)
T ss_dssp EECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---EECCSEEEEE--EEECTTCSSEEEEE
T ss_pred eecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---hheeeeeeeE--EEecCCCCCCceEE
Confidence 666543 355555677777765333 2467777876542210 0000000000 00000000 000
Q ss_pred ----cCCCCCcceEEe------c-ccceeeeEEEeeee----------eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 190 ----KHPCDQSVATYK------G-HSVLRTLIRCHFSP----------VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 190 ----~~~~~~~~~~~~------~-~~~~~~~~~~~~~~----------~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
+.....++.... + ..+..+.....+.| ..|+....+..-..-|.|++||+.++..+..-
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 000000000000 0 01111222222222 13444556777788999999999999998776
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.-...+|...+-+....-++.....|.+.--.+
T Consensus 297 rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 297 RISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred cccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 666677777776665555555556666554443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=90.30 E-value=13 Score=35.62 Aligned_cols=111 Identities=15% Similarity=0.124 Sum_probs=64.8
Q ss_pred cceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe--------------cccCCeEEEEEccCCCcEEEEecCCCe
Q 022074 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--------------AHTSDVNTVCFGDESGHLIYSGSDDNL 105 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~~l~s~s~dg~ 105 (303)
..|.++...++|. +..|+..+-|.++|..++....... -....|.++... .++.+. .|+.++-
T Consensus 258 ~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~lW-igt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNNIW-IGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCCEE-EEEBSSC
T ss_pred ceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCCEE-EEecCCe
Confidence 4588888887776 5556663448899988765432111 123467788763 445544 5666667
Q ss_pred EEEEcCccccCCCccceeec----------ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 106 CKVWDRRCLNVKGKPAGVLM----------GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
|..++..... ...+. .....|.++...++|. |..|+.++-+..||...
T Consensus 335 l~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 392 (781)
T 3v9f_A 335 INFISNAPPT-----FHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGK 392 (781)
T ss_dssp EEEECSSCCS-----CEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTE
T ss_pred EEEeCCCCCc-----ceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCC
Confidence 8888754211 11110 1234588887777776 55666667788888653
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=89.99 E-value=18 Score=36.74 Aligned_cols=109 Identities=16% Similarity=0.233 Sum_probs=61.2
Q ss_pred eEEEEEcCC-CCEEEEee----------CCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEE
Q 022074 42 IFSLKFSTD-GRELVAGS----------SDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109 (303)
Q Consensus 42 v~~l~~s~~-g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lW 109 (303)
+..+.|..+ ..++++|+ ..|.|.+|++..+++.... ...++.|.+++-- ++.++++. ..+|++|
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla~i--g~~l~vy 909 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLASI--NSTVRLY 909 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEEEE--TTEEEEE
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEEEc--CCEEEEE
Confidence 444445433 46888887 3578999998755443221 2345788888743 35444433 3689999
Q ss_pred cCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcc
Q 022074 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 110 d~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~ 158 (303)
++... +.......+-..+..+.....+++++.|...+++.+...+
T Consensus 910 ~l~~~----~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 910 EWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp EECTT----SCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEE
T ss_pred ECCCC----ceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEE
Confidence 97521 1111111111223322232346788888888888776543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=89.58 E-value=8.8 Score=32.53 Aligned_cols=112 Identities=11% Similarity=-0.046 Sum_probs=60.2
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEE-ecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.++...+.++.+.+++..++++. +|.+..-+-..+.....+ ......+..+.+.+ +++++ .++.+|.+++++....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNS 235 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEE
T ss_pred cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCC
Confidence 45566789999999988777664 454433322213322222 23445678888854 35555 4556788887731100
Q ss_pred cCCCccceee-cccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 115 NVKGKPAGVL-MGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 115 ~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
.+....... ..+...+..+.+.+++..++.+ .++.+
T Consensus 236 -~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i 272 (327)
T 2xbg_A 236 -ENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL 272 (327)
T ss_dssp -EEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE
T ss_pred -CeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE
Confidence 011111110 0122357778787777665555 45655
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=14 Score=34.78 Aligned_cols=193 Identities=8% Similarity=-0.005 Sum_probs=104.6
Q ss_pred ceEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 41 GIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
...+|+|++.++.|+.. ..++.|+.++++.......+.........+++....+++..+-...+.|.+.++.. .
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG-----~ 112 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG-----Q 112 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-----T
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC-----C
Confidence 47899999876666654 45788999998765443333222234667777544566777777788888888642 1
Q ss_pred cceee-cccccCeEEEEeCCCCCEE-EEE-eCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 120 PAGVL-MGHLEGITFIDSRGDGRYL-ISN-GKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 120 ~~~~~-~~h~~~v~~~~~~~~~~~l-~s~-~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
....+ ......-..+++.|....| .|- +....|...++...... .
T Consensus 113 ~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~--------------------------------~ 160 (628)
T 4a0p_A 113 HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT--------------------------------T 160 (628)
T ss_dssp TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------------------------------E
T ss_pred cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE--------------------------------E
Confidence 12222 2233456778888744444 443 22344544544311000 0
Q ss_pred ceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
+ ..+ +.......+.++ +++..+-...+.|...|+..... ..+.........+++.. +.+++|-...+.
T Consensus 161 l--~~~-------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~ 229 (628)
T 4a0p_A 161 L--VPN-------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRS 229 (628)
T ss_dssp E--ECS-------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTE
T ss_pred E--ECC-------CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCE
Confidence 0 000 000011123443 44455555677888888864332 23333333456777755 455556555777
Q ss_pred EEEeec
Q 022074 276 VVRWEF 281 (303)
Q Consensus 276 i~~Wd~ 281 (303)
|...|.
T Consensus 230 I~~~dk 235 (628)
T 4a0p_A 230 IERANK 235 (628)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 777774
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.81 E-value=9.2 Score=31.72 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=34.4
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEEeCC-----CCEEEeecCC
Q 022074 221 GQKYIYTGSHD-----SCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWD-----GDVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~d-----g~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~D-----g~i~~Wd~~~ 283 (303)
++++++.||.+ ..+.+||+.+.+= +..+.........+.+ ++.+++.|+.+ ..+.++|+..
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 45666666643 4689999987642 2222211122233333 67788888754 4567777654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.47 E-value=13 Score=32.05 Aligned_cols=106 Identities=14% Similarity=0.073 Sum_probs=59.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEE--E----ecccCCeEEEEEccC---CCcEEEEe--cCCCeEEEEc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--I----LAHTSDVNTVCFGDE---SGHLIYSG--SDDNLCKVWD 110 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~--~----~~h~~~v~~l~~~~~---~~~~l~s~--s~dg~v~lWd 110 (303)
-..|+|.|||+.+++--..|.|++++..+++.... + .........++++|+ ++.+.++= ..+..|.-|.
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 57899999998766655589999998766553211 1 112356788999764 34454432 2344454454
Q ss_pred Ccccc----CCCccceeec----ccccCeEEEEeCCCCCEEEEEe
Q 022074 111 RRCLN----VKGKPAGVLM----GHLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 111 ~~~~~----~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~ 147 (303)
..... ........+. +....-..+.|.++|.++++.+
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 43210 0001111111 1111234577899998888765
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.33 E-value=11 Score=31.04 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=34.5
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCeEEE--EeecCCCCeEEEEECCCCCeEEEEeCCC-----CEEEeecCC
Q 022074 221 GQKYIYTGSHD-----SCVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~d-----g~i~iwd~~~~~~~~--~~~~h~~~I~~v~~sp~~~~las~s~Dg-----~i~~Wd~~~ 283 (303)
++++++.||.+ ..+.+||+.+.+-.. .+.........+. -++++++.|+.++ .+.++|+..
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 46677777754 568999998765322 1211111122222 3677777777653 456777654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.24 E-value=11 Score=31.04 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCeE--EEEeecCCCCeEEEEECCCCCeEEEEeCCC-----CEEEeecCCC
Q 022074 221 GQKYIYTGSHD-----SCVYVYDLVSGEQ--VAALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPGN 284 (303)
Q Consensus 221 ~~~~latg~~d-----g~i~iwd~~~~~~--~~~~~~h~~~I~~v~~sp~~~~las~s~Dg-----~i~~Wd~~~~ 284 (303)
++++++.||.+ ..+.+||+.+.+- +..+......-..+. .++++++.|+.++ .+.++|+...
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 46777777754 4699999987643 221211111112222 3677788887664 4788886543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=87.14 E-value=9.7 Score=34.20 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEec------ccCCeEEEEEccC---CCcEEEEecC--------
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILA------HTSDVNTVCFGDE---SGHLIYSGSD-------- 102 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~------h~~~v~~l~~~~~---~~~~l~s~s~-------- 102 (303)
-.+|+|.|+|+.+++-...+.|++++..++.... .+.. ...+...++++|+ ++.+.++-+.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 4689999999866654433478888776554322 1111 1346678999764 4555555432
Q ss_pred ----CCeEEEEcCccccCC-Cccceeec----ccccCeEEEEeCCCCCEEEEEeC
Q 022074 103 ----DNLCKVWDRRCLNVK-GKPAGVLM----GHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 103 ----dg~v~lWd~~~~~~~-~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
...|.-++....... ......+. +.......+.|.++|.++++.+.
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 123444443211000 01111111 11123577889999998887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=86.96 E-value=14 Score=31.79 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCCeEEEEEeCCCeEEEEECCCC-eEE--EEe-ecCCCCeEEEEECCCCCeEEEEe
Q 022074 220 TGQKYIYTGSHDSCVYVYDLVSG-EQV--AAL-KYHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 220 ~~~~~latg~~dg~i~iwd~~~~-~~~--~~~-~~h~~~I~~v~~sp~~~~las~s 271 (303)
.++.++++.-..+.|...++... +.. ..+ ..-...+.++++.|||.++++..
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 46777777777888988888743 221 222 22245789999999998777764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.56 E-value=15 Score=31.58 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEe---cccCCeEEEEEccC---CCcEEEEecCC-----CeEEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RIL---AHTSDVNTVCFGDE---SGHLIYSGSDD-----NLCKV 108 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~---~h~~~v~~l~~~~~---~~~~l~s~s~d-----g~v~l 108 (303)
-..++|.|+|+ ++++..+|.|++++ ++.... .+. ........++++++ ++.+.++-..+ ..|..
T Consensus 33 P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 33 PWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp EEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred ceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 46899999998 45556779999998 443211 111 11346788999765 35555544432 56666
Q ss_pred EcCccccCCC-cc-ceeec---ccccCeEEEEeCCCCCEEEEEe
Q 022074 109 WDRRCLNVKG-KP-AGVLM---GHLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 109 Wd~~~~~~~~-~~-~~~~~---~h~~~v~~~~~~~~~~~l~s~~ 147 (303)
++........ +. ...+. +.......+.+.++|.+.++.+
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 6643110000 00 11111 1111234678899998777754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=84.89 E-value=26 Score=32.86 Aligned_cols=195 Identities=10% Similarity=0.007 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEec-ccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCc
Q 022074 42 IFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK 119 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~ 119 (303)
..+++|++.++.|+... ..+.|..++++.......+.. .......+++....++++++-..++.|.+.++.. .
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG-----~ 116 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG-----S 116 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-----C
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCC-----C
Confidence 67899998777766654 467788888876532222222 2246788888655566777777888999988642 2
Q ss_pred cceeec-ccccCeEEEEeCCCCCEE-EEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 120 PAGVLM-GHLEGITFIDSRGDGRYL-ISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 120 ~~~~~~-~h~~~v~~~~~~~~~~~l-~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
....+. .....-..+++.|.+.+| .|--. ...|...++.....
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~---------------------------------- 162 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR---------------------------------- 162 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------------------
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce----------------------------------
Confidence 222222 233345566777654444 44311 23333333321000
Q ss_pred ceEEecccceeeeEEEeeeeeeeC-CCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYST-GQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..+.... +.......+.+ ++++..+-...+.|...|+..........+.......+++..+ .++.|-...+.
T Consensus 163 -~~l~~~~-----~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 163 -FIIINSE-----IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp -EEEECSS-----CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCS
T ss_pred -EEEEeCC-----CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCE
Confidence 0000000 00000112333 3455555556778888888644332222212223356777665 55666666777
Q ss_pred EEEeecC
Q 022074 276 VVRWEFP 282 (303)
Q Consensus 276 i~~Wd~~ 282 (303)
|...|..
T Consensus 236 V~~~d~~ 242 (619)
T 3s94_A 236 ILACNKY 242 (619)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 8877754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.60 E-value=16 Score=30.31 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCeEE--EEeecCCCCeEEEEECCCCCeEEEEeCCC-----CEEEeecCC
Q 022074 221 GQKYIYTGSHD-----SCVYVYDLVSGEQV--AALKYHTSPVRDCSWHPSQPMLVSSSWDG-----DVVRWEFPG 283 (303)
Q Consensus 221 ~~~~latg~~d-----g~i~iwd~~~~~~~--~~~~~h~~~I~~v~~sp~~~~las~s~Dg-----~i~~Wd~~~ 283 (303)
++++++.||.+ ..+.+||+.+.+=. ..+.........+. -++++++.|+.++ .+.++|+..
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 46677777654 56999999876432 11111111112222 2667777777543 456777654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=84.35 E-value=24 Score=36.79 Aligned_cols=107 Identities=13% Similarity=0.209 Sum_probs=64.1
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceee
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVL 124 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~ 124 (303)
.-.+|..+.++.=. ..++.|||+.+....... .-...|.-=.|-.+ +.++-.+ +..|..|++.. ...|...+
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~-~~~e~VvfWkWis~--~~l~lVT-~~aVyHW~~~~---~s~P~k~f 142 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-TMTDDVTFWKWISL--NTVALVT-DNAVYHWSMEG---ESQPVKMF 142 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccc-ccCCCceEEEecCC--CeeEEEc-CCeEEEeccCC---CCccHHHH
Confidence 45778777766654 678999999887644322 22345666667443 3343333 34899999853 33455555
Q ss_pred cccc----cCeEEEEeCCCCCEEEEEe-------CCCcEEEEEccc
Q 022074 125 MGHL----EGITFIDSRGDGRYLISNG-------KDQAIKLWDIRK 159 (303)
Q Consensus 125 ~~h~----~~v~~~~~~~~~~~l~s~~-------~D~~v~lWdl~~ 159 (303)
..|. ..|..-..+++.+.++-.| -.|.+.+|...+
T Consensus 143 dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 5553 3344445566666665322 357888887664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.17 E-value=16 Score=30.01 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCeEEEEEeCC-----CeEEEEECCCCeEEE--EeecCCCCeEEEEECCCCCeEEEEeCC-----CCEEEeecCCC
Q 022074 221 GQKYIYTGSHD-----SCVYVYDLVSGEQVA--ALKYHTSPVRDCSWHPSQPMLVSSSWD-----GDVVRWEFPGN 284 (303)
Q Consensus 221 ~~~~latg~~d-----g~i~iwd~~~~~~~~--~~~~h~~~I~~v~~sp~~~~las~s~D-----g~i~~Wd~~~~ 284 (303)
++++++.||.+ ..+.+||+.+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.++|+...
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 45666777654 458899988764322 11111111122222 56777777764 45777886543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=84.13 E-value=11 Score=33.72 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=49.5
Q ss_pred eeCCCeEEEEEeCCCeEEEEECCCCe------------EEEEeec------CCCCeEEEEECCCC---CeEEEEeCCCCE
Q 022074 218 YSTGQKYIYTGSHDSCVYVYDLVSGE------------QVAALKY------HTSPVRDCSWHPSQ---PMLVSSSWDGDV 276 (303)
Q Consensus 218 ~s~~~~~latg~~dg~i~iwd~~~~~------------~~~~~~~------h~~~I~~v~~sp~~---~~las~s~Dg~i 276 (303)
.+|+|++||..+ +..|.|..+..+. ..+.+.. ...+|..+-|||-+ ..|++-..|++|
T Consensus 73 lSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~I 151 (452)
T 3pbp_A 73 SSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTI 151 (452)
T ss_dssp ECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCE
T ss_pred ECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEE
Confidence 578899888875 4578888876321 1223321 35789999999965 589999999999
Q ss_pred EEeecCCCCcc
Q 022074 277 VRWEFPGNGEA 287 (303)
Q Consensus 277 ~~Wd~~~~~~~ 287 (303)
++||+....+.
T Consensus 152 r~yDl~~s~~~ 162 (452)
T 3pbp_A 152 TMFDILNSQEK 162 (452)
T ss_dssp EEEETTCTTSC
T ss_pred EEEEcccCCCC
Confidence 99999864333
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=11 Score=30.43 Aligned_cols=104 Identities=15% Similarity=0.074 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce------EEEEeccc-CCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL------SLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~------~~~~~~h~-~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
.+..++|+|+|...++ .+|.++-.+..+.+. ...+-... ..-.++.| .+++.+.++ .||.|.-++.-.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~f-D~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFF-DPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEE-CTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEE-CCCCCEEEe--CCCEEEEeCCCc
Confidence 4679999999985555 677666555544211 11111100 11256777 456777666 569988777421
Q ss_pred ccCCCccc---eee-cccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 114 LNVKGKPA---GVL-MGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 114 ~~~~~~~~---~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
. ....-. ..+ .+--..+..+.+.|+|.+.+.. |+.+
T Consensus 117 ~-~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 117 S-DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp S-TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred C-CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 0 011100 011 1111457899999999866666 6663
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.32 E-value=32 Score=31.32 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=65.3
Q ss_pred ceEEEEEcC-CCCEEEEeeC-CCeEEEEECCCCceEEEEecc---cCCeEEEEE-------ccCCCcEEEEecCCC----
Q 022074 41 GIFSLKFST-DGRELVAGSS-DDCIYVYDLEANKLSLRILAH---TSDVNTVCF-------GDESGHLIYSGSDDN---- 104 (303)
Q Consensus 41 ~v~~l~~s~-~g~~l~sgs~-Dg~v~lwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~~l~s~s~dg---- 104 (303)
.-..|+|+| ++..|+++.. .+.|++.|++++.+......- ......++| .++ ++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~-G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE-AEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT-TCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC-CCEEEEEeCCCCCcc
Confidence 356889998 4555555544 467999999888765433221 124788888 764 55444444332
Q ss_pred ---eEEEEcCcc-ccCCCcc-ceeecccccCeEEEEeCC-CCCEEEEEeCCCcEEEEEcc
Q 022074 105 ---LCKVWDRRC-LNVKGKP-AGVLMGHLEGITFIDSRG-DGRYLISNGKDQAIKLWDIR 158 (303)
Q Consensus 105 ---~v~lWd~~~-~~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~s~~~D~~v~lWdl~ 158 (303)
.|.+.+... ....... ...+... .....+++++ ++.++++-..++.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 255665321 0111000 0112111 2234556778 56666777788889999986
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=80.91 E-value=27 Score=30.24 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=67.1
Q ss_pred cceEEEEE--cCC-CC-EEEEeeCCCeEEEEECC---CCce----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 40 FGIFSLKF--STD-GR-ELVAGSSDDCIYVYDLE---ANKL----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 40 ~~v~~l~~--s~~-g~-~l~sgs~Dg~v~lwd~~---~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
..++.+++ ++. ++ ++++...+|.+..|++. .++. ..++. -.+.+..+... +....|+.+-++..|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvD-d~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAAD-DEYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEE-TTTTEEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEc-CCCCeEEEecccceEEE
Confidence 44666777 664 44 68888899999999883 3322 22222 23456666664 34557778888866555
Q ss_pred EcCcccc-CCCccceee-cccc-cCeEEEEe--CCCCC-EEE-EEeCCCcEEEEEcc
Q 022074 109 WDRRCLN-VKGKPAGVL-MGHL-EGITFIDS--RGDGR-YLI-SNGKDQAIKLWDIR 158 (303)
Q Consensus 109 Wd~~~~~-~~~~~~~~~-~~h~-~~v~~~~~--~~~~~-~l~-s~~~D~~v~lWdl~ 158 (303)
+|.+... ...+.+..+ .++- ..+..+++ .++++ +|+ ++-.+.+.-+||..
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5543111 011222222 1222 24666666 44444 554 45478899999985
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=80.40 E-value=33 Score=30.91 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=51.1
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
+....+|| ++..|+.-..++.-+.-|.+.+||+.++.....-.=..+.|..-+... ...-++.....|.|..-.
T Consensus 255 e~~~DFPv-amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 255 EAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp TSTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEEEEEE
T ss_pred ccccCcee-EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceEEEEE
Confidence 45666776 677888777888889999999999999987654433445555555533 344566666777775543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 303 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-13 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.003 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.6 bits (210), Expect = 8e-20
Identities = 42/268 (15%), Positives = 95/268 (35%), Gaps = 27/268 (10%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+ + + F +V+ S D I V+D E + HT V + F L
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+D + + ++ + GH ++ + +G +++S +D+ IK+W+
Sbjct: 75 ASCSADMTIKLWDFQGFECIR-----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 157 IRKMSSN----------------------ASCNLGFRSYEWDYRWMDYPPQARDLKHPCD 194
++ ASC+ W + + R+ +H +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
+ + + ++ +GS D + ++D+ +G + L H +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
VR +H ++S + D + W++
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.5 bits (202), Expect = 1e-18
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 25/234 (10%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106
+G +V+ S D I +++++ H V V ++ G LI S S+D
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP-NQDGTLIASCSNDQTV 167
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
+VW + L H + I + Y + + + S
Sbjct: 168 RVWVVA----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 223
Query: 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226
+ WD + T GH + F G K+I
Sbjct: 224 SRDKTIKMWDVS--------------TGMCLMTLVGHD--NWVRGVLFHS----GGKFIL 263
Query: 227 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
+ + D + V+D + + L H V +H + P +V+ S D V WE
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.9 bits (146), Expect = 3e-11
Identities = 27/177 (15%), Positives = 48/177 (27%), Gaps = 7/177 (3%)
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
K W R L GH +T + ++S +D IK+WD +
Sbjct: 1 KEWIPR-----PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL 55
Query: 167 NL--GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
++ + S +
Sbjct: 56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281
I + S D + ++++ +G V H VR + ++ S S D V W
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.8 bits (138), Expect = 3e-10
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G+ + + F + G+ +++ + D + V+D + + + AH V ++ F ++
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-HKTAPY 303
Query: 97 IYSGSDDNLCKVWD 110
+ +GS D KVW+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 5e-04
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
+ AL H SPV +HP ++VS+S D + W++
Sbjct: 7 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 47
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 4e-17
Identities = 38/211 (18%), Positives = 67/211 (31%), Gaps = 37/211 (17%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDS 136
V TV G I +GS D +VWD + GH + + +
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF 262
Query: 137 RGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196
DG+ ++S D+++KLW+++ ++ +
Sbjct: 263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK-------------- 308
Query: 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256
S + +YI +GS D V +D SG + L+ H + V
Sbjct: 309 --------------DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354
Query: 257 DC------SWHPSQPMLVSSSWDGDVVRWEF 281
S P + + S D W++
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.1 bits (167), Expect = 7e-14
Identities = 30/156 (19%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 23 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL--------- 73
+ + LD G+ ++S+ F+ DG+ +V+GS D + +++L+
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297
Query: 74 ---SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130
+ + H V +V ++ I SGS D WD++ G P +L GH
Sbjct: 298 GTCEVTYIGHKDFVLSVAT-TQNDEYILSGSKDRGVLFWDKK----SGNPLLMLQGHRNS 352
Query: 131 ITFIDSRG------DGRYLISNGKDQAIKLWDIRKM 160
+ + + + D ++W +K+
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (153), Expect = 4e-12
Identities = 45/257 (17%), Positives = 78/257 (30%), Gaps = 27/257 (10%)
Query: 53 ELVAGSSDDCIYVYDLEANKLS----LRILAHTSDVNTVCFGDESGHLIYSGSDDN--LC 106
+ + ++D +Y+ + + L HTS V V F G + +G + +
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKF-SNDGEYLATGCNKTTQVY 88
Query: 107 KVWDRRCL-----------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
+V D + + + I + DG++L + +D+ I++W
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Query: 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQ--ARDLKHPCDQSVATYKGHSVLRTLIRCH 213
DI + + + + T + L
Sbjct: 149 DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT 208
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-------HTSPVRDCSWHPSQPM 266
V KYI GS D V V+D +G V L H V +
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268
Query: 267 LVSSSWDGDVVRWEFPG 283
+VS S D V W
Sbjct: 269 VVSGSLDRSVKLWNLQN 285
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.1 bits (188), Expect = 1e-16
Identities = 31/192 (16%), Positives = 52/192 (27%), Gaps = 42/192 (21%)
Query: 88 CFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG 147
L SG+ D K+WD R +G GH I I +G +
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVR----EGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 148 KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 207
D +L+ + + D SV+
Sbjct: 246 DDATCRLF-------------------DLRADQELMTYSHDNIICGITSVS--------- 277
Query: 208 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPML 267
+S + + G D V+D + ++ L H + V +
Sbjct: 278 ----------FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAV 327
Query: 268 VSSSWDGDVVRW 279
+ SWD + W
Sbjct: 328 ATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 3e-15
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYV--YDLEANKLSLRILAHTSDVNTVCFGDESG 94
G+ I ++ F +G GS D + + ++ + +V F +SG
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSG 282
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154
L+ +G DD C VWD K AGVL GH ++ + DG + + D +K+
Sbjct: 283 RLLLAGYDDFNCNVWDAL----KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 155 WD 156
W+
Sbjct: 339 WN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.2 bits (165), Expect = 1e-13
Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 10/208 (4%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
H + + + + L+ S S D +WD + +
Sbjct: 54 HLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSY----TTNKVHAIPLRSSWVMTCAYAPS 108
Query: 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199
G Y+ G D +++++ N + + + + + D + A
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 200 YKGHSVLRTLIRCHFSP-----VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
+ + +T + + + +G+ D+ ++D+ G H S
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
+ + P+ + S D ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLR 256
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.3 bits (160), Expect = 5e-13
Identities = 39/201 (19%), Positives = 69/201 (34%), Gaps = 43/201 (21%)
Query: 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 97
++ + SL + D R V+G+ D ++D+ H SD+N +CF +G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF-FPNGNAF 241
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
+GSDD C+++D R + + GIT + GR L++ D +WD
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSH--DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPV 217
K GH + +
Sbjct: 300 LKA----------------------------------DRAGVLAGHD--NRVSCLGVTD- 322
Query: 218 YSTGQKYIYTGSHDSCVYVYD 238
+ TGS DS + +++
Sbjct: 323 ---DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (152), Expect = 5e-12
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 71
+G+ ++ + ++ + GI S+ FS GR L+AG D V+D
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 72 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110
+ + H + V+ + + G + +GS D+ K+W+
Sbjct: 303 DRAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 4e-13
Identities = 31/266 (11%), Positives = 59/266 (22%), Gaps = 27/266 (10%)
Query: 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLI 97
I +K L+ S D + VY + ++ +L + + F D + I
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 98 YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDI 157
Y G+ D +G + I +
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 158 RKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP- 216
+ + + +R + + V ++ S
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 217 --------VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY---------------HTS 253
+ Q+ S D V V
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 254 PVRDCSWHPSQPMLVSSSWDGDVVRW 279
PV + P L ++ DG + W
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 8e-07
Identities = 24/222 (10%), Positives = 48/222 (21%), Gaps = 16/222 (7%)
Query: 79 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID-SR 137
A ++ + S L+ S D V+ + + + +
Sbjct: 9 APKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-SLRYKHPLLCCNFID 66
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197
+ I D+ S + + + V
Sbjct: 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126
Query: 198 ATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH---------DSCVYVYDLVSGEQVAAL 248
+ + ++ S K ++ +S V + L E
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186
Query: 249 KYHTS----PVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 286
+ Q SS DG V F G+
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.001
Identities = 15/91 (16%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 33 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 92
D ++ + S++FS + L SD I ++L+ K ++ A ++ + V
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKI-AC 302
Query: 93 SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123
S +++ + D+ K ++ + +
Sbjct: 303 SDNILCLATSDDTFKTNAAIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (82), Expect = 0.004
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 251 HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNK 293
+ D PS+ +L+ +SWDG + ++F + L
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS 52
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.2 bits (157), Expect = 1e-12
Identities = 40/261 (15%), Positives = 74/261 (28%), Gaps = 4/261 (1%)
Query: 20 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 79
+++ + S D I S K DG L+ G + ++DL A +
Sbjct: 78 DISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---PRIK 134
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
+ + GH +G + ID D
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194
Query: 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199
G L + G D ++ WD+R+ + + + Y +
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
L C S ++ K+ + D+ + + G + K +S V C
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCD 313
Query: 260 WHPSQPMLVSSSWDGDVVRWE 280
+V+ S D +E
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 3e-09
Identities = 37/245 (15%), Positives = 67/245 (27%), Gaps = 8/245 (3%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 101
+S + DG+ D + + + + L H V V +Y+G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTI-SNPTRHVYTGG 70
Query: 102 DDNLCKVWD-RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160
+ KVWD N + I DG LI G+ + +WD+
Sbjct: 71 KGCV-KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Query: 161 SSNASCNLGFRSYEW----DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216
+ L + + + +
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
S ++TG D+ V +DL G Q+ + S + + P+ L +V
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-SQIFSLGYCPTGEWLAVGMESSNV 248
Query: 277 VRWEF 281
Sbjct: 249 EVLHV 253
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
H S V ++ F G S DNL W G + D D
Sbjct: 264 HESCVLSLKF-AYCGKWFVSTGKDNLLNAWRTP----YGASIFQS-KESSSVLSCDISVD 317
Query: 140 GRYLISNGKDQAIKLWDI 157
+Y+++ D+ ++++
Sbjct: 318 DKYIVTGSGDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.6 bits (145), Expect = 4e-11
Identities = 32/264 (12%), Positives = 68/264 (25%), Gaps = 26/264 (9%)
Query: 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGDESGHLIYS 99
I ++ D ++ ++ +++Y+ NK + H V V + + I +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW-APDSNRIVT 68
Query: 100 GSDDNLCKVWDRRCLNVK------------------GKPAGVLMGHLEGITFIDSRGDGR 141
D VW + K +G + I
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 142 YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYK 201
+ + + + + L + + P +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 202 GHSVLRTLIRCHFSPVYS----TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257
L V+ + SHDS V + D VA L T P+
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 258 CSWHPSQPMLVSSSWDGDVVRWEF 281
++ ++ + D V + +
Sbjct: 249 VTFITESSLVAAGH-DCFPVLFTY 271
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 203 HSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG--EQVAALKYHTSPVRDCSW 260
HS L I CH ++ + I ++ V++Y+ QV LK H V W
Sbjct: 3 HSFLVEPISCH---AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59
Query: 261 HPSQPMLVSSSWDGDVVRWEFP 282
P +V+ D + W
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLK 81
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 9e-07
Identities = 23/287 (8%), Positives = 64/287 (22%), Gaps = 22/287 (7%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGH 95
++ + + ++ D +V +D YV+ L+ ++ + +
Sbjct: 49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 108
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
GS + + N + + +D + L + D +++
Sbjct: 109 KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF 168
Query: 156 DIRK-------MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRT 208
+ + F ++ + +V
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228
Query: 209 LIRC-------------HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
+ + T + G V ++ S +
Sbjct: 229 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVP 287
Query: 256 RDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQFY 302
+ S + D G L+K + +
Sbjct: 288 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.7 bits (88), Expect = 6e-04
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 46 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
F T+ LVA D ++ ++ L + + D
Sbjct: 250 TFITESS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 308
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFI----DSRGDGRYLISNGKDQAIKLWDIRKMS 161
AG+ H ++ I + + G D + +WD+R +
Sbjct: 309 SSEGSAA------AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362
Query: 162 S 162
S
Sbjct: 363 S 363
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 2e-10
Identities = 43/242 (17%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 52 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111
R +V+G+ D + V+D E + HT+ V ++ F G + SGS D +VWD
Sbjct: 148 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDV 204
Query: 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171
G L GH + ++ L+S D +K+WDI+ + +
Sbjct: 205 ET----GNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258
Query: 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHD 231
++ T S D
Sbjct: 259 HQSAVTCLQFNKN---------------------------------------FVITSSDD 279
Query: 232 SCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQPMLVSSSWDGD----VVRWEFP 282
V ++DL +GE + L V ++ + S +G ++ +F
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
Query: 283 GN 284
+
Sbjct: 340 VD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 4e-10
Identities = 34/237 (14%), Positives = 74/237 (31%), Gaps = 15/237 (6%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF-GDESGHLIYSGSDDNL 105
G +V+GS D+ + V+ K ++ HT V + + +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165
+ G + V HL + D + + + + + + +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG----QCLHVLMGHVA 138
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
+ Y + + + T +GH+ + ++
Sbjct: 139 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--------NRVYSLQFDGIHV 190
Query: 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
+GS D+ + V+D+ +G + L H S + +LVS + D V W+
Sbjct: 191 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 245
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 6e-06
Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106
LV+G++D + ++D++ + + + V + + + + SDD
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 107 KVWDRRCLN-VKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD----QAIKLWD 156
K+WD + ++ G + I + ++ + + D
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 2e-05
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 195 QSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP 254
+S KGH + I +GS D+ + V+ V+G+ + L HT
Sbjct: 7 KSPKVLKGHD---DHVITCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 255 VRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
V + + S+ V E
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETG 87
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-09
Identities = 39/263 (14%), Positives = 84/263 (31%), Gaps = 14/263 (5%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
S G++ L++ D +++V+G D+ I ++D + + HT V + + +
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 70
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
S S + V LN + R + +++ KD++I +WD
Sbjct: 71 GSSDSTVRVWDVNTGEMLN---------TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFS- 215
+ + + V +RTL
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275
+ + +GS D+ + ++D+ G + +VS ++DG
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 276 VVRWEFPGNGEAAPPLNKKRIRR 298
+ W+ + P +R
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRT 262
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 2e-08
Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 7/206 (3%)
Query: 76 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFID 135
RI + V I SG DN K+WD+ + +L GH + +
Sbjct: 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQ 62
Query: 136 SRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195
S+ + + +M + + + M D
Sbjct: 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122
Query: 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
+ T + V KYI + S D + V++ + E V L H +
Sbjct: 123 ASPT-DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Query: 256 RDCSWHPSQPMLVSSSWDGDVVRWEF 281
+ ++VS S D + W+
Sbjct: 182 ACLQYRDR--LVVSGSSDNTIRLWDI 205
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 1e-07
Identities = 41/228 (17%), Positives = 64/228 (28%), Gaps = 59/228 (25%)
Query: 62 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121
I V+D+ + V D I S S D KVW+ +
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----TCEFV 171
Query: 122 GVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181
L GH GI + R ++S D I+LWDI +
Sbjct: 172 RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 229
Query: 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241
I +G++D + V+DLV+
Sbjct: 230 R------------------------------------------IVSGAYDGKIKVWDLVA 247
Query: 242 GEQ---------VAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
+ L H+ V + +VSSS D ++ W+
Sbjct: 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 2e-07
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106
R +V+GSSD+ I ++D+E + V I SG+ D
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 107 KVWDRRCLNVKGKPAG-----VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
KVWD PAG L+ H + + D ++S+ D I +WD
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 2e-09
Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 20/299 (6%)
Query: 2 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSS 59
P + + G + + + + G S + ++KFS + L +G
Sbjct: 26 DPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE 85
Query: 60 DDCIYVYDLEANKLSLRIL--------AHTSDVNTVCF-GDESGHLIYSGSDDNLCKVWD 110
+ V+ +K S + ++ + + + + DN
Sbjct: 86 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145
Query: 111 R------RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164
++ + + GD ++ R
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 165 SCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKY 224
S ++ R + +S K + ++ + +
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265
Query: 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW---HPSQPMLVSSSWDGDVVRWE 280
T D+ + V+D+ + + V + + ++S S DG + +E
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 9e-09
Identities = 30/247 (12%), Positives = 59/247 (23%), Gaps = 12/247 (4%)
Query: 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 103
L + G ++ + +Y + + + H+ SG+ SG
Sbjct: 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKT-SPSGYYCASGDVH 79
Query: 104 NLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160
++WD + P R
Sbjct: 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 139
Query: 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYST 220
+ S ++ D +K S + S Y+
Sbjct: 140 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP 199
Query: 221 GQKYIYTGSHDSCVYVYDLVSGEQVA-------ALKYHTSPVRDCSWHPSQPMLVSSSWD 273
+ D + +Y+ V G + H+ V +W P + S+S D
Sbjct: 200 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 259
Query: 274 GDVVRWE 280
+ W
Sbjct: 260 KTIKIWN 266
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 2e-08
Identities = 25/254 (9%), Positives = 61/254 (24%), Gaps = 10/254 (3%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
+S K S G +G + ++D L+ +S
Sbjct: 56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESK 115
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
+ + + + + + +IS D + +++
Sbjct: 116 RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKG---------HSVLR 207
++ + D A G
Sbjct: 176 GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 235
Query: 208 TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTS-PVRDCSWHPSQPM 266
F +S I + S D + ++++ + + + T + ++
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 295
Query: 267 LVSSSWDGDVVRWE 280
LVS S +G +
Sbjct: 296 LVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 2e-05
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 214 FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
+P G K Y + + VY + S H+ PS S
Sbjct: 25 NTP---AGDKIQYC--NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 79
Query: 274 GDVVRWEF 281
G+V W+
Sbjct: 80 GNVRIWDT 87
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.001
Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 5/79 (6%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE-GITFIDSRG 138
S G I S S D K+W+ K + +
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVA----TLKVEKTIPVGTRIEDQQLGIIW 291
Query: 139 DGRYLISNGKDQAIKLWDI 157
+ L+S + I +
Sbjct: 292 TKQALVSISANGFINFVNP 310
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 1e-08
Identities = 33/290 (11%), Positives = 67/290 (23%), Gaps = 45/290 (15%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGH 95
G++ I +L S DG+ L + ++ I +D+ + H + + + +
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 96 LIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLW 155
S D ++ A L G+
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 156 DIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH------------------------ 191
S S + + + + K
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189
Query: 192 ----------------PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVY 235
+ + +S + TGS D+ V
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 236 VYDLVSGEQVAALKY---HTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
V+++ + S V W +VS+ D ++ W P
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 1e-04
Identities = 22/162 (13%), Positives = 39/162 (24%)
Query: 123 VLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDY 182
V GH + IT + S DG+ L S + I WDI SN + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 183 PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG 242
+ V + S + Y + +
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126
Query: 243 EQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284
+ + + + D V ++ G
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 168
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.9 bits (83), Expect = 0.002
Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
Query: 213 HFSPV----YSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPML 267
H + S K +++ + + +D+ +G H + + + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDL 69
Query: 268 VSSSWDGDVVRWEFPGNG 285
+ SWD + G+G
Sbjct: 70 FTVSWDDHLKVVPAGGSG 87
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 2e-08
Identities = 38/236 (16%), Positives = 76/236 (32%), Gaps = 23/236 (9%)
Query: 47 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 106
+ ++ G+ D I VYD K L++ H V + + G ++ SGS D
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTD--R 74
Query: 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASC 166
V I + +Y+++ +D + +W + K SS
Sbjct: 75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 134
Query: 167 NLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226
+ + P L+ S +
Sbjct: 135 GEEHDYPLVFHTPEENPYFVGVLRG-------------------HMASVRTVSGHGNIVV 175
Query: 227 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282
+GS+D+ + V+D+ + + L HT + + + +S+S D + W+
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 231
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 7e-07
Identities = 32/231 (13%), Positives = 64/231 (27%), Gaps = 8/231 (3%)
Query: 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVW 109
+ + + + + + +V G+++ SGS DN VW
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186
Query: 110 DRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169
D K +L GH + I + + IS D I++WD+ +
Sbjct: 187 DVAQ----MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH 242
Query: 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS 229
+ A Y + I
Sbjct: 243 TALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNILVSG 300
Query: 230 HDSCVYVYDLVSGEQVAA-LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
++ +Y+L SG+ V A + + ++ ++ + DG
Sbjct: 301 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.9 bits (104), Expect = 6e-06
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 207 RTLIRCHFSPVY---STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263
RT +R H + V Y+ TG+ D + VYD ++ + + L H V +
Sbjct: 5 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 264 QPMLVSSSWDGDVVRWEF 281
++ S+ V
Sbjct: 65 GILVSGSTDRTVRVWDIK 82
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYS 99
+ ++ ++ S++ +Y+L + KL + + +V F + L+ +
Sbjct: 283 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK--TLVAA 340
Query: 100 GSDDNLCKVWD 110
D +
Sbjct: 341 VEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 35/206 (16%), Positives = 58/206 (28%), Gaps = 45/206 (21%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
H + V T + + + +G+DD + +V+D K L GH G+ +
Sbjct: 11 HMTSVITCLQFE--DNYVITGADDKMIRVYDSI----NKKFLLQLSGHDGGVWALKYAHG 64
Query: 140 GRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVAT 199
G L+S D+ +++WDI+K +
Sbjct: 65 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN---------------- 107
Query: 200 YKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCS 259
KYI TGS D+ ++V+ L V
Sbjct: 108 ----------------------IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 145
Query: 260 WHPSQPMLVSSSWDGDVVRWEFPGNG 285
P V G+G
Sbjct: 146 TPEENPYFVGVLRGHMASVRTVSGHG 171
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (117), Expect = 1e-07
Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Query: 155 WDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHF 214
K S + D + + + + +
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219
Query: 215 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSWHPSQPMLVSSSWD 273
+ + + TGS D+ +++Y + + + AL H V + W LVSS D
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD 278
Query: 274 GDVVRW 279
+ RW
Sbjct: 279 ACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 2e-06
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 80 HTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD 139
+ L+ +GS D ++ + K L H +G+ +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYS---VKRPMKIIKALNAHKDGVNNLLWETP 269
Query: 140 GRYLISNGKDQAIKLWDI 157
L+S+G D IK W++
Sbjct: 270 ST-LVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.1 bits (81), Expect = 0.003
Identities = 27/250 (10%), Positives = 72/250 (28%), Gaps = 11/250 (4%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 96
G++ GI +L + L++GS D I + + H++ + ++
Sbjct: 11 GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK--AQE 59
Query: 97 IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156
S S D+ KV +P + + + D L S D +
Sbjct: 60 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119
Query: 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSP 216
S+ + + + + ++ K + + + +
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179
Query: 217 VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDV 276
G+ +Y ++ A+ + + + ++ + S D ++
Sbjct: 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNI 239
Query: 277 VRWEFPGNGE 286
+ +
Sbjct: 240 FIYSVKRPMK 249
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-07
Identities = 26/253 (10%), Positives = 69/253 (27%), Gaps = 16/253 (6%)
Query: 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 102
F+ FS +L+A S ++ D+ + + + V G ++ G+
Sbjct: 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGDTKVAFIHGTR 63
Query: 103 D-NLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMS 161
+ + ++D R + + G+ ++ +
Sbjct: 64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 123
Query: 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH------FS 215
+ + + + R++ Y + + A + R + ++
Sbjct: 124 RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183
Query: 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGE-------QVAALKYHTSPVRDCSWHPSQPMLV 268
P + K +Y S+ S D V + + P
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243
Query: 269 SSSWDGDVVRWEF 281
+ +D + +
Sbjct: 244 AGEYDLNDMYKRS 256
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 2e-07
Identities = 20/225 (8%), Positives = 48/225 (21%), Gaps = 25/225 (11%)
Query: 78 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSR 137
+ + + +G H G V+D +
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-----TTENSHDYAPAFD 187
Query: 138 GDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRW----------------MD 181
D + L D ++ +
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247
Query: 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241
P + Y+ L + I + PV+ Y + YD+ +
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT 307
Query: 242 GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGE 286
+ + + + D + ++ DG + + +
Sbjct: 308 RK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.1 bits (102), Expect = 9e-06
Identities = 28/221 (12%), Positives = 52/221 (23%), Gaps = 10/221 (4%)
Query: 43 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 102
F G I+VYD+E K+ ++ D D +Y S
Sbjct: 141 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD--SKNLYYLSY 198
Query: 103 DNLCKVWDRR---CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159
+L DR V+ + D
Sbjct: 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP 258
Query: 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKH----PCDQSVATYKGHS-VLRTLIRCHF 214
++ + E P + P + Y + + +
Sbjct: 259 INVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLT 318
Query: 215 SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
S +K + D +Y + L E ++ P+
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 13/141 (9%), Positives = 29/141 (20%), Gaps = 14/141 (9%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDE 92
K AG D + I+ S +
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284
Query: 93 S--GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQ 150
+ + +D + + +T + D + ++ D
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVK--------TRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336
Query: 151 AIKLWDIRKMSSNASCNLGFR 171
I + + K + R
Sbjct: 337 KIYTFPLEKPEDERTVETDKR 357
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.0 bits (115), Expect = 3e-07
Identities = 13/277 (4%), Positives = 50/277 (18%), Gaps = 41/277 (14%)
Query: 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESGHLIYSGSDD 103
++ + + ++V D+ ++ + + T ++ +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 104 NLCKVWDRRCLNVKGK--PAGVLMGHLEGITFI------------DSRGDGRYLISNGKD 149
D + V + + K
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 150 QAIKLWDIRKMSSNASCNLGFR-------SYEWDYRWMDYPPQARDLKHPCDQSVATYKG 202
++++ D P + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 203 HSVLR-------------------TLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE 243
+ R + + ++ T DL +G+
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 244 QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280
+ + + + +++
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYD 278
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 5e-07
Identities = 19/217 (8%), Positives = 55/217 (25%), Gaps = 28/217 (12%)
Query: 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 100
++ ++ + DG VAG + V + L + + +
Sbjct: 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 101 SDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160
S + + T + D + + D++
Sbjct: 202 SPRHEFSMLY---------------------TIARFKDDKQDPATADLLYGYLSVDLKTG 240
Query: 161 SSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH--FSPVY 218
++ + + + K +++ H + +
Sbjct: 241 KTHTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAF 299
Query: 219 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPV 255
+Y G + + V++ + E+V +K +
Sbjct: 300 DKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.4 bits (111), Expect = 8e-07
Identities = 37/315 (11%), Positives = 77/315 (24%), Gaps = 56/315 (17%)
Query: 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCI 63
+H+VDV S T+ + FG + + D R V + I
Sbjct: 20 LHVVDVASDTVYKSCVM---------------PDKFGPGTAMMAPDNRTAYVLNNHYGDI 64
Query: 64 YVYDLEANKL---------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 108
Y DL+ K S+ A + D V + ++
Sbjct: 65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRL 124
Query: 109 WDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD---IRKMSSNAS 165
+ + + + DG ++ + + +
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184
Query: 166 CNLGFRSYEWDYRWMDYPPQ---------------------ARDLKHPCDQSVATYKGHS 204
G+ + + Y W P+ A L + T K H+
Sbjct: 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT 244
Query: 205 VLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQ 264
+ + + + + + YDL + + A ++
Sbjct: 245 QEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKG 303
Query: 265 PMLVSSSWDGDVVRW 279
L D+ +
Sbjct: 304 DKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 6e-04
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 216 PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY-HTSPVRDCSWHP-SQPMLVSSSWD 273
P G +Y+ ++ + ++V D+ S + P ++ V ++
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 274 GDVVRWEFPGN 284
GD+ +
Sbjct: 62 GDIYGIDLDTC 72
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.3 bits (113), Expect = 5e-07
Identities = 24/309 (7%), Positives = 65/309 (21%), Gaps = 49/309 (15%)
Query: 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL-VAGSSDDCI 63
+ ++D ++ + + + GR + + +
Sbjct: 13 LVVIDTEKMAVDKVITI--------------ADAGPTPMVPMVAPGGRIAYATVNKSESL 58
Query: 64 YVYDLEANKLSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVWDR------R 112
DL + RI T + + L S L
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118
Query: 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK------------- 159
+ + IT + DG L G+D + +
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178
Query: 160 -MSSNASCNLGFRSYEWDYRWMDYPPQARDLK------HPCDQSVATYKGHSVLRTLIRC 212
+ + + + +D+ + + + +R
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238
Query: 213 HFSPVY--STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270
+ + + + +DL + + + +
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLG 297
Query: 271 SWDGDVVRW 279
GD+ +
Sbjct: 298 GALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 1e-06
Identities = 25/276 (9%), Positives = 66/276 (23%), Gaps = 22/276 (7%)
Query: 5 VHIVDVGSGTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 63
+ +D+ +G ++ T A + + +
Sbjct: 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV 117
Query: 64 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL--------- 114
+YD E + + + + + L G D ++ +
Sbjct: 118 ALYDAETLSR-RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176
Query: 115 -------NVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167
+V + F +R D + D+
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236
Query: 168 LGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCH--FSPVYSTGQKYI 225
+ + P + R + ++ ++ + H +S ST +
Sbjct: 237 RI--MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV 294
Query: 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH 261
+ G + YD + E+ + + +
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (105), Expect = 5e-06
Identities = 18/234 (7%), Positives = 49/234 (20%), Gaps = 11/234 (4%)
Query: 54 LVAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD- 110
++A + D + V D E + + I + + D
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 111 RRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170
+ ++ + DG+ L ++L + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL---- 119
Query: 171 RSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH 230
+D + + + A P T + S
Sbjct: 120 ----YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSW 175
Query: 231 DSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284
++ Y V + +++ ++ +
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.002
Identities = 6/62 (9%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 222 QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSP--VRDCSWHPS-QPMLVSSSWDGDVVR 278
+ YI + + V D + + P + + + +V+
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 279 WE 280
+
Sbjct: 61 ID 62
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 35/308 (11%), Positives = 76/308 (24%), Gaps = 66/308 (21%)
Query: 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE------ANKLSLRILAHTSDVNTVCFG 90
+ IFS+ V+ S D + V+D + S H S ++ V
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 91 D------ESGHLIYSGSDDNLCKVWD----RRCLNVKGKPAGVLMGHLEG-------ITF 133
L+ + S + V + +L ++
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 134 IDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA------- 186
+ R L++ +W + ++ S + + P
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 187 ------------------RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTG 228
+ + + + ++ + S +S +
Sbjct: 190 VDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 229 SHDSCVYVY----------------DLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272
+ S + H+S V S++ S L S+ W
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 309
Query: 273 DGDVVRWE 280
DG + W+
Sbjct: 310 DGKLRFWD 317
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 9e-06
Identities = 22/311 (7%), Positives = 67/311 (21%), Gaps = 58/311 (18%)
Query: 39 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG---- 94
+ + + + S + Y + + +++ D+ S
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 95 ----------HLIYSGSDDNLCKVWD--------------RRCLNVKGKPAGVLMGHLEG 130
H + + +W M +
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 131 ITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEW--------------- 175
T +D G + + + +++ ++ + +
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 176 ---------DYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIY 226
Y + + + + S ++ + +
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 227 TGSHDSCVYVYDLVSGEQVAALKYHTSPVRDC----SWHPSQPMLVSSSWDGDVVRWEFP 282
+ D + +D+ + E++ L H + + L DV +
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-DVKFLKKG 364
Query: 283 GNGEAAPPLNK 293
LN+
Sbjct: 365 WRSGMGADLNE 375
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 22/305 (7%), Positives = 52/305 (17%), Gaps = 46/305 (15%)
Query: 10 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 69
V + A D S F+ +V
Sbjct: 5 VAGSAAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTE----------NWVSCAG 54
Query: 70 ANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAG 122
+ S G + +V+D V P
Sbjct: 55 CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD----PVTFLPIA 110
Query: 123 VLMGHLEGITFIDSR-------GDGRYL-ISNGKDQAIKLWDI--RKMSSNASCNLGFRS 172
+ + R L A + F
Sbjct: 111 DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI 170
Query: 173 YEWDYRW---------MDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK 223
+ + A + + +
Sbjct: 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS------SQAAQANYPGM 224
Query: 224 YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283
++ + AA+ + S + ++ + +V+ + D +
Sbjct: 225 LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284
Query: 284 NGEAA 288
+ +
Sbjct: 285 HSRSC 289
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 4e-05
Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 13/131 (9%)
Query: 40 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI-----LAHTSDVNTVCFGDESG 94
+ + + S GR L D + + DL + + S + G E
Sbjct: 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 95 HLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRG-------DGRYLISNG 147
+ I + D L K + M + E + R I N
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181
Query: 148 KDQA-IKLWDI 157
K+ I L D
Sbjct: 182 KETGKILLVDY 192
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.7 bits (88), Expect = 5e-04
Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 4/241 (1%)
Query: 41 GIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 99
S DG ++ VA + + + + D N + + A +S D + +
Sbjct: 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTN 92
Query: 100 GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159
+ L + G L ++ + +
Sbjct: 93 MASSTLSVIDTTSNTVAGTVKTGKSPLGL-ALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151
Query: 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYS 219
+ + + + D + D + +
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211
Query: 220 TGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHP-SQPMLVSSSWDGDVVR 278
T + + V + D + + A + P + P + + V+ S+ V
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSV 270
Query: 279 W 279
Sbjct: 271 I 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.2 bits (84), Expect = 0.002
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 55 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110
+A S D I V D+ +NK+ + S+ + + + + N + D
Sbjct: 6 IANSESDNISVIDVTSNKV-TATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID 60
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (83), Expect = 0.003
Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 30/207 (14%)
Query: 47 FSTDGREL-VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL 105
DG VA ++ + E L +N + ++G L++ +
Sbjct: 164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-----INHPAYSQKAGRLVWP-TYTGK 217
Query: 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNAS 165
D + K PA E R G ++ + + +
Sbjct: 218 IHQIDLSSGDAKFLPAV--EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH 275
Query: 166 CNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI 225
D + +A ++ + ++ + S + +
Sbjct: 276 KTASRFVVVLDA--------------KTGERLAKFEMGHEIDSI---NVSQ---DEKPLL 315
Query: 226 Y-TGSHDSCVYVYDLVSGEQVAALKYH 251
Y + D +Y++D SGE++ ++
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 36.0 bits (81), Expect = 0.004
Identities = 14/227 (6%), Positives = 49/227 (21%), Gaps = 2/227 (0%)
Query: 55 VAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112
+A I+V++L +++ V + + +L + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67
Query: 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS 172
+ A + + + + + ++
Sbjct: 68 PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127
Query: 173 YEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS 232
+ + + + + + + G + H +
Sbjct: 128 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187
Query: 233 CVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279
Y Y + + P + + M+ + D
Sbjct: 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 234
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 303 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.88 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.87 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.84 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.83 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.81 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.8 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.74 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.73 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.69 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.65 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.64 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.63 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.5 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.48 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.43 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.34 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.27 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.16 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.69 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.65 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.65 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.6 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.38 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.16 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.15 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.1 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.06 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.9 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.9 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.76 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.62 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.61 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.02 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.75 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.43 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.14 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.26 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.99 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 91.3 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 87.9 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 84.82 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.63 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.6e-33 Score=236.03 Aligned_cols=232 Identities=23% Similarity=0.385 Sum_probs=171.4
Q ss_pred CCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccC----------------------
Q 022074 35 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE---------------------- 92 (303)
Q Consensus 35 ~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~---------------------- 92 (303)
..||+.+|.+|+|+|++++|++|+.||+|+|||+.+++....+.+|...|.+++|+++
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 92 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccc
Confidence 3799999999999999999999999999999999999887778788877777777542
Q ss_pred -------------------CCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 93 -------------------SGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 93 -------------------~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
+++.+++++.|+.+++||++ .......+.+|...+.++.+++++.+|++++.|+.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccceeeeccCCCceEEeeccCcceeEeecc----cceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 23457777888888888865 3345566778999999999999999999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccc--------------------c-CCCCCcc-----------eEEe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL--------------------K-HPCDQSV-----------ATYK 201 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~~-----------~~~~ 201 (303)
+|+++.......... ... .+..+.+.+..... . ...+..+ ..+.
T Consensus 169 ~~~~~~~~~~~~~~~-~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 244 (317)
T d1vyhc1 169 VWVVATKECKAELRE-HRH---VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244 (317)
T ss_dssp EEETTTCCEEEEECC-CSS---CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEeeccceeeEEEec-CCC---CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe
Confidence 999876432211110 000 00011111111000 0 0001111 1122
Q ss_pred cccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 202 GHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
+|... .....++|++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|++++|+||+.||+|++||
T Consensus 245 ~~~~~------v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 245 GHDNW------VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCSSC------EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCCC------EEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 22111 12234778999999999999999999999999999999999999999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-32 Score=238.18 Aligned_cols=206 Identities=21% Similarity=0.320 Sum_probs=156.0
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.||+.+|.+|+|+|++++|++|+.||+|+|||+.+++....+..|...|.+++|+| +++++++|+.|+.+++|+.....
T Consensus 52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~~~~~ 130 (340)
T d1tbga_ 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEESSSSC
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccccccc
Confidence 59999999999999999999999999999999999998888899999999999975 57899999999999999743211
Q ss_pred CCC-----------------------------------------------------------------------------
Q 022074 116 VKG----------------------------------------------------------------------------- 118 (303)
Q Consensus 116 ~~~----------------------------------------------------------------------------- 118 (303)
...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 210 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEE
Confidence 000
Q ss_pred ------ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 119 ------KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 119 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
.+...+.+|...|.+++++|++++|++++.|+.|++||++.....
T Consensus 211 ~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~----------------------------- 261 (340)
T d1tbga_ 211 WDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL----------------------------- 261 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------------------------
T ss_pred EECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc-----------------------------
Confidence 011122345555555556665556666666666666655432110
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeC
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~ 272 (303)
..+........ .....|++++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|++++|+||+.
T Consensus 262 -----~~~~~~~~~~~----i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~ 332 (340)
T d1tbga_ 262 -----MTYSHDNIICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332 (340)
T ss_dssp -----EEECCTTCCSC----EEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred -----cccccccccCc----eEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc
Confidence 00000000000 112347789999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEee
Q 022074 273 DGDVVRWE 280 (303)
Q Consensus 273 Dg~i~~Wd 280 (303)
||+|++||
T Consensus 333 Dg~v~iWd 340 (340)
T d1tbga_ 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.8e-31 Score=230.47 Aligned_cols=255 Identities=19% Similarity=0.281 Sum_probs=188.8
Q ss_pred hccccccccccCcCcc---cccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCC--ceEEEEecccCCeEEEEEc
Q 022074 16 ESLANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~--~~~~~~~~h~~~v~~l~~~ 90 (303)
|..+.||++-.+.... .....+|+.+|.+++|+|+|++|++|+.||+|++||+... .....+..|...+..++|+
T Consensus 71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 150 (337)
T d1gxra_ 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS 150 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEEC
T ss_pred CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccc
Confidence 5668899876654332 3345799999999999999999999999999999998754 3445667888999999996
Q ss_pred cCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc
Q 022074 91 DESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF 170 (303)
Q Consensus 91 ~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~ 170 (303)
+ ++..+++++.|+.|++||++ .........+|...+.++++++++..+++++.|+.+++||++..........
T Consensus 151 ~-~~~~l~s~~~d~~i~~~~~~----~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-- 223 (337)
T d1gxra_ 151 P-DSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-- 223 (337)
T ss_dssp T-TSSEEEEEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--
T ss_pred c-cccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccceeeccccc--
Confidence 5 57899999999999999976 3344556778999999999999999999999999999999976432211111
Q ss_pred cceeeeceeeeCCCCCccccCCC-CCcceEEecccceeeeE----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE
Q 022074 171 RSYEWDYRWMDYPPQARDLKHPC-DQSVATYKGHSVLRTLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV 245 (303)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~ 245 (303)
...+..+.+.+....+.... +..+..++-........ .......|+|++++|++|+.||.|++||..+++.+
T Consensus 224 ---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~ 300 (337)
T d1gxra_ 224 ---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ---ccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 11112233344433332211 22222222111100000 01123457899999999999999999999999988
Q ss_pred EEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 246 AALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 246 ~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
..+. |..+|++++|+|++++|+||+.||+|++||+
T Consensus 301 ~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 301 FQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 7764 7889999999999999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.6e-31 Score=228.87 Aligned_cols=219 Identities=16% Similarity=0.249 Sum_probs=172.6
Q ss_pred ccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE--EEEecccCCeEEEEEccCCCcE
Q 022074 19 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHL 96 (303)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~ 96 (303)
+-||++-++... ....||+.+|.+++|+|+|++|++|+.||+|+|||+.++... ..+..|...|.+++|++ ++++
T Consensus 40 v~i~~~~~~~~~--~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~ 116 (311)
T d1nr0a1 40 VYTVPVGSLTDT--EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKR 116 (311)
T ss_dssp EEEEETTCSSCC--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCE
T ss_pred EEEEECCCCcee--EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccc
Confidence 456666443322 234799999999999999999999999999999999887643 44678999999999976 4778
Q ss_pred EEEecC--CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccce
Q 022074 97 IYSGSD--DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSY 173 (303)
Q Consensus 97 l~s~s~--dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~ 173 (303)
+++++. +..+++|+.+ ..+....+.+|.+.|.+++|+|++++ |++|+.|+.|++||++....
T Consensus 117 l~~~~~~~~~~~~v~~~~----~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~----------- 181 (311)
T d1nr0a1 117 IAAVGEGRERFGHVFLFD----TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF----------- 181 (311)
T ss_dssp EEEEECCSSCSEEEEETT----TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----------
T ss_pred cccccccccccccccccc----cccccccccccccccccccccccceeeeccccccccccccccccccc-----------
Confidence 887765 5679999975 33445667889999999999999875 78999999999999874321
Q ss_pred eeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee----
Q 022074 174 EWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK---- 249 (303)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~---- 249 (303)
...+.+|.... ....++|+++++++++.|+.|++||..+++.+..++
T Consensus 182 -----------------------~~~~~~~~~~i------~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~ 232 (311)
T d1nr0a1 182 -----------------------KSTFGEHTKFV------HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL 232 (311)
T ss_dssp -----------------------EEEECCCSSCE------EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS
T ss_pred -----------------------ccccccccccc------cccccCcccccccccccccccccccccccccccccccccc
Confidence 11111121111 123467889999999999999999999988777664
Q ss_pred ---cCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 250 ---YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 250 ---~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|..+|++++|+|++++|+||+.||+|++||+...
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~ 270 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 270 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence 58899999999999999999999999999998644
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=2.1e-30 Score=225.16 Aligned_cols=233 Identities=16% Similarity=0.142 Sum_probs=179.3
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~--Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
+|+.|..+.||+.-.+.........+|+.+|.+++|+|+++++++++. +..++||++++++...++.+|...|.+++|
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~ 154 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred ccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 566788899998866654433345789999999999999999999886 456999999999887788899999999999
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccC
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLG 169 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~ 169 (303)
+|+....|++|+.|+.|++||.+ ..+....+.+|...|.++.++|+++++++++.|+.+++||++..........
T Consensus 155 ~~~~~~~l~sgs~d~~i~i~d~~----~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~- 229 (311)
T d1nr0a1 155 KPSRPFRIISGSDDNTVAIFEGP----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED- 229 (311)
T ss_dssp CSSSSCEEEEEETTSCEEEEETT----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC-
T ss_pred cccceeeeccccccccccccccc----ccccccccccccccccccccCccccccccccccccccccccccccccccccc-
Confidence 87655578899999999999986 3345566778999999999999999999999999999999875322111000
Q ss_pred ccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee
Q 022074 170 FRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK 249 (303)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~ 249 (303)
. .....+|.... .+..|+|++++|++|+.||.|+|||+.+++++.++.
T Consensus 230 ---------------~-----------~~~~~~h~~~V------~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 230 ---------------D-----------SLKNVAHSGSV------FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp ---------------T-----------TSSSCSSSSCE------EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ---------------c-----------ccccccccccc------cccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence 0 00011121111 123478899999999999999999999999998887
Q ss_pred cCCC-CeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 250 YHTS-PVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 250 ~h~~-~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
.|.. ....+.+.++++.|++++.||.|++||+
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 278 VGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred CCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence 6643 2233344445668999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.9e-30 Score=230.41 Aligned_cols=246 Identities=13% Similarity=0.093 Sum_probs=179.7
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEecccCCeEEEEEcc
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RILAHTSDVNTVCFGD 91 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~~h~~~v~~l~~~~ 91 (303)
+.+..+.||+.-.|.-.......||+.+|.+|+|+|++++|++|+.|++|+|||+.++.... .+.+|...|.+++|+|
T Consensus 26 ~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p 105 (371)
T d1k8kc_ 26 PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP 105 (371)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT
T ss_pred eCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccccccccc
Confidence 44677888887444322223347999999999999999999999999999999998876443 3457888999999975
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCcc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
+++.|++++.|+++++|+...............+|...|.+++++|++.+|++++.|+++++||+............
T Consensus 106 -~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~-- 182 (371)
T d1k8kc_ 106 -NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT-- 182 (371)
T ss_dssp -TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB--
T ss_pred -ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccc--
Confidence 57899999999999999875322111122334568889999999999999999999999999998653221111000
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYH 251 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h 251 (303)
.+. ........+....+|.... ....|+|++++|++++.|+.|++||+.+++.+..+..|
T Consensus 183 --~~~------------~~~~~~~~~~~~~~~~~~v------~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 242 (371)
T d1k8kc_ 183 --PWG------------SKMPFGELMFESSSSCGWV------HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE 242 (371)
T ss_dssp --TTB------------SCCCTTCEEEECCCCSSCE------EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred --ccc------------ccccceeeeeeccCccCcE------EEEEeecccccccccccCCcceEEeeecccceeeeecc
Confidence 000 0000011122222232211 22347889999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
..+|++++|+|++++|++|+ |+.+++|....
T Consensus 243 ~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~ 273 (371)
T d1k8kc_ 243 TLPLLAVTFITESSLVAAGH-DCFPVLFTYDS 273 (371)
T ss_dssp SCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred cccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence 99999999999998888765 78888876543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=7.3e-30 Score=226.55 Aligned_cols=205 Identities=13% Similarity=0.119 Sum_probs=162.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCc--eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
||.|++|+|||++|++|+.||.|+|||+.+++ ....+.+|.+.|.+++|+| ++++|++|+.|++|++||++.. ..
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~~~--~~ 85 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGR--TW 85 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETT--EE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeeccc--cc
Confidence 59999999999999999999999999998875 3455778999999999976 5789999999999999997532 22
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.+...+.+|...|.++.|+|++++|++++.|+++++|++......... ..
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~------------------------------~~ 135 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC------------------------------KH 135 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE------------------------------EE
T ss_pred ccccccccccccccccccccccccceeecccCcceeeeeecccccccc------------------------------cc
Confidence 234455678899999999999999999999999999998643211000 00
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCC------------------eEEEEeecCCCCeEEEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSG------------------EQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~------------------~~~~~~~~h~~~I~~v~~ 260 (303)
...++.... .+..|+|++++|++|+.|++|++||.... +.+.....|...|.+++|
T Consensus 136 ~~~~~~~~v------~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 209 (371)
T d1k8kc_ 136 IKKPIRSTV------LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 209 (371)
T ss_dssp ECTTCCSCE------EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred ccccccccc------ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence 001111101 12346789999999999999999997542 356667789999999999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+|++++|++++.|+.+++||+...
T Consensus 210 s~~g~~l~s~~~d~~i~iwd~~~~ 233 (371)
T d1k8kc_ 210 SANGSRVAWVSHDSTVCLADADKK 233 (371)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGGT
T ss_pred ecccccccccccCCcceEEeeecc
Confidence 999999999999999999998643
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.8e-29 Score=222.25 Aligned_cols=240 Identities=24% Similarity=0.392 Sum_probs=177.6
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEcc
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 91 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~ 91 (303)
+|+.|..+.||+..+|.... ...||...|.++.+++++..+++++.++.+++||..+.........+ ....++.+.+
T Consensus 138 s~~~dg~v~i~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~ 214 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVM--ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSP 214 (388)
T ss_dssp EEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred eccccccccccccccccccc--ccccccccccccccccccccccccccceeeeeeeccccccccccccc-cccccccccC
Confidence 46677888888886665432 34789999999999999999999999999999999988766554444 4556666767
Q ss_pred CCCcEEEEecCCCeEEEEcCccccCCC---ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc
Q 022074 92 ESGHLIYSGSDDNLCKVWDRRCLNVKG---KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL 168 (303)
Q Consensus 92 ~~~~~l~s~s~dg~v~lWd~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~ 168 (303)
.++++|++++.|+.|++||.+...... .......+|...|.++.+++++++|++++.|+.|++||++..........
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence 778999999999999999976322111 11223457889999999999999999999999999999875432211100
Q ss_pred CccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 169 GFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
. ...........|.... ....+++++++|++|+.||.|++||+.+++++.++
T Consensus 295 ~----------------------~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 295 P----------------------NSGTCEVTYIGHKDFV------LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346 (388)
T ss_dssp --------------------------CEEEEEECCSSCE------EEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred c----------------------cccceeeecccccceE------EEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 0 0000111222222111 12346788999999999999999999999999999
Q ss_pred ecCCCCeEEEEE------CCCCCeEEEEeCCCCEEEeecC
Q 022074 249 KYHTSPVRDCSW------HPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 249 ~~h~~~I~~v~~------sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
++|.++|+++++ +|++++||||+.||+|++|+++
T Consensus 347 ~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999974 6789999999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-28 Score=215.85 Aligned_cols=239 Identities=16% Similarity=0.198 Sum_probs=171.9
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCce-----EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
+|..+|.+++|+|+|++|++|+ ||+|+|||+.++.. .....+|.+.|.+++|+| ++++|++|+.||+|++||+
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~ 126 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccc
Confidence 7999999999999999999987 89999999976532 223457889999999975 5789999999999999997
Q ss_pred ccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 112 RCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
... .......+.+|...+..+.+++++.++++++.|+.+++||++.......... ....+..+.+.+....+..
T Consensus 127 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~----~~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 127 AAP--TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----HTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp CCC----EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEE
T ss_pred ccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccc
Confidence 532 2233455678889999999999999999999999999999875432211110 0111112233333222221
Q ss_pred C-CCCcceEEeccccee-eeE---EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 192 P-CDQSVATYKGHSVLR-TLI---RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 192 ~-~~~~~~~~~~~~~~~-~~~---~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
. .+..+..++-..... ... ....+..|+|++++|++|+.|+.+++||+.+++.. ....|..+|++++|+|++++
T Consensus 201 ~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~ 279 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSE
T ss_pred ccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCCE
Confidence 1 122222222111100 000 01123457889999999999999999999988865 44679999999999999999
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
|++++.||.|++||....
T Consensus 280 l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 280 FVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EEEEETTSEEEEEETTTC
T ss_pred EEEEeCCCeEEEEECCCC
Confidence 999999999999998654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.2e-28 Score=214.58 Aligned_cols=238 Identities=21% Similarity=0.358 Sum_probs=168.7
Q ss_pred CcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe------------------cccCCeEEEEEccCCCcEEE
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------------------AHTSDVNTVCFGDESGHLIY 98 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~------------------~h~~~v~~l~~~~~~~~~l~ 98 (303)
+|+.+|.||+|+|||++|++|+ |++|+|||+.+++...++. .|...|.+++|++ ++++|+
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~ 137 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLA 137 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcce
Confidence 6999999999999999999986 8999999999887655443 4566799999975 588999
Q ss_pred EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeece
Q 022074 99 SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYR 178 (303)
Q Consensus 99 s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~ 178 (303)
+|+.||+|++||.. ..+....+.+|...|.++.+++++..+++++.++.+++||++............ ....
T Consensus 138 s~~~dg~v~i~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~ 209 (388)
T d1erja_ 138 TGAEDRLIRIWDIE----NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED----GVTT 209 (388)
T ss_dssp EEETTSCEEEEETT----TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS----CEEE
T ss_pred eccccccccccccc----ccccccccccccccccccccccccccccccccceeeeeeecccccccccccccc----cccc
Confidence 99999999999975 344566678899999999999999999999999999999987543221111100 0001
Q ss_pred eeeCCCCCccccCC-CCCcceEEecccc--eeee------E----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe--
Q 022074 179 WMDYPPQARDLKHP-CDQSVATYKGHSV--LRTL------I----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE-- 243 (303)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~------~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~-- 243 (303)
....+.+...+... .+..+..++.... .... . .......|++++++|++|+.||.|++||+.+++
T Consensus 210 ~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 289 (388)
T d1erja_ 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289 (388)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred ccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc
Confidence 11122222222211 1222222221110 0000 0 011234578899999999999999999987653
Q ss_pred ----------EEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 ----------QVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ----------~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
.......|...|++++|+|++++|++|+.||+|++||+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~ 340 (388)
T d1erja_ 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340 (388)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred cccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 23345578899999999999999999999999999998643
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.3e-27 Score=204.56 Aligned_cols=239 Identities=17% Similarity=0.219 Sum_probs=166.0
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRR 112 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~ 112 (303)
...||+.+|.+|+|+|+|++|++|+.||+|++||+++++....+. .|...|.+++|+++ ++ +++++.|+.+++|+..
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~-~~~~~~d~~v~~~~~~ 84 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GD-LFTVSWDDHLKVVPAG 84 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SC-EEEEETTTEEEEECSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ce-eecccceeeEEEeccC
Confidence 458999999999999999999999999999999999988776554 58889999999754 54 5577789999999975
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
... ..........+...+..+.+++++.+++++ .++.+++|+........ . ......+.+.++...+...
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~~~~~---~-----~~~~~~~~~s~~~~~l~~g 154 (299)
T d1nr0a2 85 GSG-VDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKLTEVP---I-----SYNSSCVALSNDKQFVAVG 154 (299)
T ss_dssp SSS-SCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEEEEEE---C-----SSCEEEEEECTTSCEEEEE
T ss_pred Ccc-cccccccccccccccccccccccccccccc-ccccccccccccccccc---c-----ccccccccccccccccccc
Confidence 322 112222334566778888999988866555 56789999865421100 0 0011122333333333221
Q ss_pred -CCCcceEEec--ccceeeeEEE----eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE---EEeecCCCCeEEEEECC
Q 022074 193 -CDQSVATYKG--HSVLRTLIRC----HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV---AALKYHTSPVRDCSWHP 262 (303)
Q Consensus 193 -~~~~~~~~~~--~~~~~~~~~~----~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~---~~~~~h~~~I~~v~~sp 262 (303)
.+..+..++- .......... .....++|++++|++++.|+.|++||..++..+ ..+.+|..+|++++|+|
T Consensus 155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1222222221 1111100111 123357889999999999999999999877554 34567999999999999
Q ss_pred CCCeEEEEeCCCCEEEeecCCC
Q 022074 263 SQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 263 ~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++++|++++.||.|++||+...
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCT
T ss_pred cccceEEEcCCCEEEEEECCCC
Confidence 9999999999999999998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.1e-27 Score=204.61 Aligned_cols=238 Identities=20% Similarity=0.257 Sum_probs=164.0
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
...||+.+|.+ +++++|++|+|||.||+|+|||+.+++....+.+|...|.+++|++ ++|++|+.|+++++|+...
T Consensus 11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT
T ss_pred EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceeccccccccccc
Confidence 34799999876 3666799999999999999999999999888999999999999964 4899999999999997431
Q ss_pred ccC------------------------------------C----------------------------------------
Q 022074 114 LNV------------------------------------K---------------------------------------- 117 (303)
Q Consensus 114 ~~~------------------------------------~---------------------------------------- 117 (303)
... .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 166 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence 000 0
Q ss_pred CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC-CCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH-PCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 196 (303)
......+.+|...+....+.+. ++++++.|+.|++||++........... .... ..+.+. ...+.. ..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~--~l~s~~~dg~i~~~d~~~~~~~~~~~~~-~~~v---~~~~~~--~~~l~s~s~d~~ 238 (342)
T d2ovrb2 167 ETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLT---SGMELK--DNILVSGNADST 238 (342)
T ss_dssp TEEEEEECCCSSCEEEEEECSS--EEEEEETTSCEEEEETTTCCEEEEECCC-CSCE---EEEEEE--TTEEEEEETTSC
T ss_pred ceeeEEEcCcccccccccCCCC--EEEEEeCCCeEEEeecccceeeeEeccc-ccce---eEEecC--CCEEEEEcCCCE
Confidence 0011223457777888888888 7999999999999999986543222111 0000 001111 111111 11222
Q ss_pred ceEEeccccee-eeEEE---e--eeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee-----cCCCCeEEEEECCCCC
Q 022074 197 VATYKGHSVLR-TLIRC---H--FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK-----YHTSPVRDCSWHPSQP 265 (303)
Q Consensus 197 ~~~~~~~~~~~-~~~~~---~--~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~-----~h~~~I~~v~~sp~~~ 265 (303)
+..++...... ..... + ....+++++.++++|+.||+|++||+++++.+..+. +|..+|++++|+|++.
T Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~ 318 (342)
T d2ovrb2 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318 (342)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred EEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC
Confidence 32222111100 00000 0 001133456799999999999999999999887764 5778999999999999
Q ss_pred eEEEEeCCCC----EEEeecCC
Q 022074 266 MLVSSSWDGD----VVRWEFPG 283 (303)
Q Consensus 266 ~las~s~Dg~----i~~Wd~~~ 283 (303)
+||+|+.||+ |++||+..
T Consensus 319 ~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 319 VCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEeCCCCCeeEEEEEeCCC
Confidence 9999999997 99999874
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=7.2e-27 Score=203.57 Aligned_cols=233 Identities=13% Similarity=0.102 Sum_probs=170.8
Q ss_pred cCchhhccccccccccCcCccc------ccCCCcccceEEEEEcCCCCEEEEeeC--CCeEEEEECCCCceEEEEecccC
Q 022074 11 GSGTMESLANVTEIHDGLDFSA------ADDGGYSFGIFSLKFSTDGRELVAGSS--DDCIYVYDLEANKLSLRILAHTS 82 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~~s~~g~~l~sgs~--Dg~v~lwd~~~~~~~~~~~~h~~ 82 (303)
-+|+.|..+.||+.-.+..... .....|..+|.+++|+++|+++++++. ++.+++|+.++++....+.+|..
T Consensus 81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 160 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ 160 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence 3677888889998866653321 123578899999999999999887764 67899999999988888889999
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCC-CCEEEEEeCCCcEEEEEccccc
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGD-GRYLISNGKDQAIKLWDIRKMS 161 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~D~~v~lWdl~~~~ 161 (303)
.|.+++|++.....+++++.|+.+++||.+..... .....+.+|...|.+++|+|+ +.+|++++.|+.|++||++...
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~ 239 (325)
T d1pgua1 161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239 (325)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred ccccccccccccceEEEeecccccccccccccccc-eecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence 99999998765667889999999999997532211 112234467788999999996 6889999999999999986432
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS 241 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~ 241 (303)
.. ..+.+|....... .+++.+ +++++|++++.|+.|+|||+.+
T Consensus 240 ~~----------------------------------~~l~~~~~~v~~~--~~s~~~-~dg~~l~s~s~D~~i~iwd~~~ 282 (325)
T d1pgua1 240 FL----------------------------------KYIEDDQEPVQGG--IFALSW-LDSQKFATVGADATIRVWDVTT 282 (325)
T ss_dssp EE----------------------------------EECCBTTBCCCSC--EEEEEE-SSSSEEEEEETTSEEEEEETTT
T ss_pred cc----------------------------------ccccccccccccc--eeeeec-cCCCEEEEEeCCCeEEEEECCC
Confidence 11 1111121111000 111112 5788999999999999999999
Q ss_pred CeEEEEeecCCCC--eEEEEECCC-CCeEEEEeCCCCEEEeec
Q 022074 242 GEQVAALKYHTSP--VRDCSWHPS-QPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 242 ~~~~~~~~~h~~~--I~~v~~sp~-~~~las~s~Dg~i~~Wd~ 281 (303)
++.+..+..|... +..+++.+. ..+|+|+|.||+|++||+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 9998887766543 444444443 347899999999999995
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.6e-27 Score=202.58 Aligned_cols=247 Identities=15% Similarity=0.076 Sum_probs=155.4
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---EEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWD 110 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd 110 (303)
.+.+|+.+|.+|+|+|++++|++||.||+|+|||+.++... ....+|...|.+++|+++.+.+|++|+.|++|++|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 45899999999999999999999999999999999765432 234479999999999877778999999999999999
Q ss_pred CccccCCCccceeeccc-ccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccc--eeeeceeeeCCCCCc
Q 022074 111 RRCLNVKGKPAGVLMGH-LEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRS--YEWDYRWMDYPPQAR 187 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 187 (303)
.... ........+ ..........+++..+++++.|+++++||++.............. ...........+...
T Consensus 86 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 86 LIGS----PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp SSSS----SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred cccc----cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 7532 112222222 233334445567789999999999999998754322111100000 000000000000000
Q ss_pred cc-cCCCCCcceEEecc--cceeeeE-------EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCe---------EEE--
Q 022074 188 DL-KHPCDQSVATYKGH--SVLRTLI-------RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGE---------QVA-- 246 (303)
Q Consensus 188 ~~-~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~---------~~~-- 246 (303)
.+ ....+..+..++-. ....... .......++.++..+++++.||.+.+|+..... ...
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 00 00111111111110 0000000 000011134567789999999999999976432 111
Q ss_pred ----EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 247 ----ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 247 ----~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
....|..+|++++|||++++||||+.||.|++||+...
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 11256678999999999999999999999999998743
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6.2e-26 Score=196.28 Aligned_cols=240 Identities=20% Similarity=0.306 Sum_probs=157.5
Q ss_pred CCCcccceE-EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 35 DGGYSFGIF-SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 35 ~~~~~~~v~-~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
..||+..|. |++ ++|++|++|+.||+|+|||+.+++...++.+|.+.|.+++|++ ++.|++|+.|++|++|+...
T Consensus 8 L~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i~iw~~~~ 83 (355)
T d1nexb2 8 LRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKK 83 (355)
T ss_dssp EECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--TTEEEEEETTCCEEEEETTT
T ss_pred ECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--CCEEEEEecccccccccccc
Confidence 469998875 455 4688999999999999999999999999999999999999975 45899999999999999752
Q ss_pred ccCCCccceeec--ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCc-cceeee--------ceeee-
Q 022074 114 LNVKGKPAGVLM--GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGF-RSYEWD--------YRWMD- 181 (303)
Q Consensus 114 ~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~-~~~~~~--------~~~~~- 181 (303)
. ....... .+........+.+++.++++++.|+.|++||++............ ...... .....
T Consensus 84 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 84 G----CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp T----EEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred c----ccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 2 1122222 222334455667888899999999999999987643221110000 000000 00000
Q ss_pred -------CCCCCccccC-CCCCcceEEeccccee-eeE----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 182 -------YPPQARDLKH-PCDQSVATYKGHSVLR-TLI----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 182 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
..+....+.. ..+..+..++...... ... .......+++++.++++++.|+.|++||..+++.+..+
T Consensus 160 ~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 160 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence 0000000000 0111111111111000 000 01122346788999999999999999999999999999
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++|..+|++++|++ ++|++++.||+|++||+...
T Consensus 240 ~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 240 QGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp CCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccc--ceeeeeeccccccccccccc
Confidence 99999999999975 68999999999999998643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5e-26 Score=198.17 Aligned_cols=211 Identities=15% Similarity=0.217 Sum_probs=159.3
Q ss_pred cccCCCcc-cceEEEEEcC--CCCEEEEeeCCCeEEEEECCCCce--------EEEEecccCCeEEEEEccCCCcEEEEe
Q 022074 32 AADDGGYS-FGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKL--------SLRILAHTSDVNTVCFGDESGHLIYSG 100 (303)
Q Consensus 32 ~~~~~~~~-~~v~~l~~s~--~g~~l~sgs~Dg~v~lwd~~~~~~--------~~~~~~h~~~v~~l~~~~~~~~~l~s~ 100 (303)
.....||. .+|.+++|+| +|++|++|+.||+|+|||+..+.. ...+..|.+.|.+++|++ +++.++++
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~ 133 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVV 133 (325)
T ss_dssp EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCcccee
Confidence 33447875 6899999997 678999999999999999976432 123456888999999975 46676655
Q ss_pred c--CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 101 S--DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 101 s--~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+ .++.+++|+.. .+.....+.+|...|.+++|++++++ +++++.|+.+++||++..+......
T Consensus 134 ~~~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~---------- 199 (325)
T d1pgua1 134 GEGRDNFGVFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---------- 199 (325)
T ss_dssp ECCSSCSEEEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC----------
T ss_pred eccccceEEEEeec----ccccceeeeecccccccccccccccceEEEeecccccccccccccccceecc----------
Confidence 4 47789999875 34556677889999999999998865 6789999999999986432110000
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCC-CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTG-QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR 256 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~ 256 (303)
...++... + .+..|+|+ +.++++|+.|+.|++||.++++.+..+.+|..++.
T Consensus 200 ---------------------~~~~~~~~--v----~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 200 ---------------------THHKQGSF--V----RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252 (325)
T ss_dssp ---------------------SSSCTTCC--E----EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred ---------------------cccCCCCc--c----EEeeeccccceeccccccccceeeeeeccccccccccccccccc
Confidence 00011100 1 12235664 68899999999999999999999999999998887
Q ss_pred EEEEC---CCCCeEEEEeCCCCEEEeecCCC
Q 022074 257 DCSWH---PSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 257 ~v~~s---p~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
++.|+ |++++|++++.|++|++||+...
T Consensus 253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 253 GGIFALSWLDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred cceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence 77776 78999999999999999998743
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.1e-25 Score=187.73 Aligned_cols=230 Identities=23% Similarity=0.376 Sum_probs=151.8
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcccc
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLN 115 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~ 115 (303)
.+|..+|.|++| ||++|++|+.||+|+|||+.+++....+.+|.+.|.+++|. +++|++|+.|++|++|+++...
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~ 86 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGE 86 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCC
T ss_pred CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeeccccccccccccccccc
Confidence 578889999765 78999999999999999999999998999999999999883 5799999999999999874211
Q ss_pred CC---------------------------------------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 116 VK---------------------------------------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 116 ~~---------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
.. ......+..|...+....+. ...+++++.|+.+++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d 164 (293)
T d1p22a2 87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWN 164 (293)
T ss_dssp EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeec
Confidence 00 00011123455566665553 45788999999999999
Q ss_pred cccccCCcccccCccceeeeceeeeCCCCCccc-cCCCCCcceEEeccccee-eeEEEee--eeeeeCCCeEEEEEeCCC
Q 022074 157 IRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL-KHPCDQSVATYKGHSVLR-TLIRCHF--SPVYSTGQKYIYTGSHDS 232 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~s~~~~~latg~~dg 232 (303)
++.............. +....+ ....+ ....+..+..++-..... .....+. ...+++++.+|++|+.||
T Consensus 165 ~~~~~~~~~~~~~~~~----v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg 238 (293)
T d1p22a2 165 TSTCEFVRTLNGHKRG----IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238 (293)
T ss_dssp TTTCCEEEEEECCSSC----EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTS
T ss_pred CCCCcEEEEEcccccc----cccccC--CCCeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCC
Confidence 9865432221110000 000000 00111 111122222222111000 0000000 012456788999999999
Q ss_pred eEEEEECCC---------CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEee
Q 022074 233 CVYVYDLVS---------GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWE 280 (303)
Q Consensus 233 ~i~iwd~~~---------~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd 280 (303)
.|++||+.+ ...+..+.+|.++|++++|+ +++|+|+|.||+|++||
T Consensus 239 ~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 999999643 24577889999999999995 57899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.8e-25 Score=191.01 Aligned_cols=227 Identities=18% Similarity=0.247 Sum_probs=160.6
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE---------------E-
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS---------------L- 75 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~---------------~- 75 (303)
+|+.|..+.||++-+|... .....+|..+|.+++|+|+|+ +++++.|+++++|+....... .
T Consensus 29 s~s~Dg~v~vWd~~~~~~~-~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (299)
T d1nr0a2 29 SADAEGHINSWDISTGISN-RVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106 (299)
T ss_dssp EEETTSCEEEEETTTCCEE-ECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEcCCCeEEEEECCCCcEE-EEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCCccccccccccccccccccccc
Confidence 5778899999998766544 334468999999999999987 556678999999987543200 0
Q ss_pred ------------------------EEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCe
Q 022074 76 ------------------------RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGI 131 (303)
Q Consensus 76 ------------------------~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v 131 (303)
........+.+++|++ +++++++|+.|+.|++||++... ........|...|
T Consensus 107 ~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~---~~~~~~~~~~~~i 182 (299)
T d1nr0a2 107 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS---VSEVKTIVHPAEI 182 (299)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE---EEEEEEEECSSCE
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc---ccccccccccccc
Confidence 0001223566777864 57899999999999999975221 1112344688999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEE
Q 022074 132 TFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIR 211 (303)
Q Consensus 132 ~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (303)
.++++++++.+|++++.|+.|++||++....... ...+.+|....
T Consensus 183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~-------------------------------~~~~~~h~~~v---- 227 (299)
T d1nr0a2 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH-------------------------------TNSWTFHTAKV---- 227 (299)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC-------------------------------CCCCCCCSSCE----
T ss_pred cccccccccccccccccccccccccccccccccc-------------------------------ccccccccccc----
Confidence 9999999999999999999999999864221100 01111222111
Q ss_pred EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE--EEEeecC-CCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 212 CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ--VAALKYH-TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 212 ~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~--~~~~~~h-~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
.+..|+|++++|++|+.||.|++||+.+++. +.....| ...|.++.| +++++|+|++.|++|++||++
T Consensus 228 --~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 228 --ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp --EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred --ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 1234678999999999999999999987643 2233334 456777755 667899999999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.9e-25 Score=199.30 Aligned_cols=69 Identities=25% Similarity=0.482 Sum_probs=61.7
Q ss_pred eeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEee-------------cCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 216 PVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALK-------------YHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 216 ~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~-------------~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
..|+|++++|++|+.|+ .|++||+.+++.+..+. +|...|++++|+|++++|+|+|.|++|++|
T Consensus 237 l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vW 316 (393)
T d1sq9a_ 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 316 (393)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred cccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEE
Confidence 45789999999999887 49999999998777663 799999999999999999999999999999
Q ss_pred ecCCC
Q 022074 280 EFPGN 284 (303)
Q Consensus 280 d~~~~ 284 (303)
|++..
T Consensus 317 d~~~g 321 (393)
T d1sq9a_ 317 DVKTK 321 (393)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.7e-26 Score=194.37 Aligned_cols=225 Identities=17% Similarity=0.213 Sum_probs=132.1
Q ss_pred cCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 34 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 34 ~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
...||+.+|.+++|+| |++|+.||+|++||+.++ ...|...|.++.+.+ +..+++++.|+++++|+...
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~--~~~~~s~s~D~~v~~w~~~~ 76 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSK--AQEYSSISWDDTLKVNGITK 76 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCS--TTCCEEEETTTEEEETTEEE
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecC--CCeEEEEeeccccccccccc
Confidence 3479999999999997 999999999999998664 357889999999853 45678999999999998542
Q ss_pred ccCCCccc-------------------eeecc----------cccCeEEEEeCCCCCEEEEEeCC-CcEEEEEccc----
Q 022074 114 LNVKGKPA-------------------GVLMG----------HLEGITFIDSRGDGRYLISNGKD-QAIKLWDIRK---- 159 (303)
Q Consensus 114 ~~~~~~~~-------------------~~~~~----------h~~~v~~~~~~~~~~~l~s~~~D-~~v~lWdl~~---- 159 (303)
......+. ..+.. +...+ ..+++++..++.++.| +.+++|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~ 154 (287)
T d1pgua2 77 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 154 (287)
T ss_dssp EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred cccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeecccccee
Confidence 11000000 00000 00111 1222334444444443 2455555431
Q ss_pred ccCCcccccCccceeeeceeeeCCCCCccccCC-CCCcceEEe------------cccceeeeEEEeeee------eeeC
Q 022074 160 MSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYK------------GHSVLRTLIRCHFSP------VYST 220 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~------~~s~ 220 (303)
......... .+..+.+.++...+... .+..+..++ +|...... ..++| .+..
T Consensus 155 ~~~~~~~~~-------~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~--~~~~p~~~~~~~~~~ 225 (287)
T d1pgua2 155 FDLKTPLRA-------KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA--ISWKPAEKGANEEEI 225 (287)
T ss_dssp EECSSCCSS-------CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE--EEECCCC------CC
T ss_pred eeeeeccCC-------ceeEEEeccCccccccccccccccceeecccccccccccccccccce--eeecccccccccccC
Confidence 000000000 00111122222221111 111111111 11111111 11111 1245
Q ss_pred CCeEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeec
Q 022074 221 GQKYIYTGSHDSCVYVYDLVS-GEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 221 ~~~~latg~~dg~i~iwd~~~-~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~ 281 (303)
++.++++|+.|++|++||+++ ++.+..+.+|..+|++++|+|++ .|+|++.|++|++|++
T Consensus 226 ~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 226 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 678999999999999999976 45677778999999999999986 5899999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6.2e-25 Score=195.89 Aligned_cols=234 Identities=14% Similarity=0.164 Sum_probs=159.2
Q ss_pred EccCchhhccccccccccCcCcc--------cccCCCcccceEEEEEcCC-----CCEEEEeeCCCeEEEEECCCCc---
Q 022074 9 DVGSGTMESLANVTEIHDGLDFS--------AADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLEANK--- 72 (303)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~l~~s~~-----g~~l~sgs~Dg~v~lwd~~~~~--- 72 (303)
.+.++++|..+.+|+...+.... ......+...+.+++|.++ +.++++++.||++++|++....
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 34577888888899887665321 1112345667888888875 4678999999999999985321
Q ss_pred ------------eEEE---EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC--CccceeecccccCeEEEE
Q 022074 73 ------------LSLR---ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK--GKPAGVLMGHLEGITFID 135 (303)
Q Consensus 73 ------------~~~~---~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~--~~~~~~~~~h~~~v~~~~ 135 (303)
.... ...+...+.+++|+++ + +|++|+.|++|++||++..... ......+.+|...|.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 0011 1234456889999764 4 8899999999999998632211 112234568999999999
Q ss_pred eCCCCCEEEEEeCCCc---EEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEE
Q 022074 136 SRGDGRYLISNGKDQA---IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 212 (303)
Q Consensus 136 ~~~~~~~l~s~~~D~~---v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (303)
|+|++++|++|+.|++ |++||+............ . ........+.||....
T Consensus 239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~--------------~-------~~~~~~~~~~gH~~~V----- 292 (393)
T d1sq9a_ 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP--------------T-------HSSQASLGEFAHSSWV----- 292 (393)
T ss_dssp ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-----------------------------CCBSBSSCE-----
T ss_pred cccccceeeeecCCCCcceeeecccccceeeeeeccc--------------c-------ccccceeeeecccCce-----
Confidence 9999999999999975 899998754321111000 0 0011122334454322
Q ss_pred eeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE----EEEECCCCCeEEEEe
Q 022074 213 HFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVR----DCSWHPSQPMLVSSS 271 (303)
Q Consensus 213 ~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~----~v~~sp~~~~las~s 271 (303)
.+..|+|++++|++|+.|++|++||+++++++.++++|..+|. .++|+|++..+++++
T Consensus 293 -~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 293 -MSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp -EEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred -eeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 2335788999999999999999999999999999999987775 477888877766554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=9e-24 Score=182.49 Aligned_cols=257 Identities=18% Similarity=0.236 Sum_probs=163.4
Q ss_pred CchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCe--EEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV--NTVCF 89 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v--~~l~~ 89 (303)
+|+.|..+.||+.-+|.... ...||+.+|.+++|+++ +.|++|+.|++|++|+............+.... ....+
T Consensus 28 tgs~Dg~i~vWd~~~~~~~~--~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (355)
T d1nexb2 28 TGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104 (355)
T ss_dssp EEETTTEEEEEETTTTEEEE--EEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEEE--EEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccccc
Confidence 56788999999987665332 33699999999999985 589999999999999999987665544433332 33344
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCC----------------------------------------------------
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVK---------------------------------------------------- 117 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~---------------------------------------------------- 117 (303)
. +++..+++++.|++|++||++.....
T Consensus 105 ~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i 183 (355)
T d1nexb2 105 Y-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 183 (355)
T ss_dssp E-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCE
T ss_pred c-cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccccee
Confidence 3 45678899999999999986421100
Q ss_pred -------CccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCcccc
Q 022074 118 -------GKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLK 190 (303)
Q Consensus 118 -------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (303)
.+......++...+..+.+++++.++++++.|++|++||++.......... ....+..+.+.+ ..+.
T Consensus 184 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----h~~~v~~~~~~~--~~l~ 257 (355)
T d1nexb2 184 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG----HTALVGLLRLSD--KFLV 257 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC----CSSCCCEEEECS--SEEE
T ss_pred eeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc----cccccccccccc--ceee
Confidence 000111223445566777888889999999999999999875432211110 000111111111 1111
Q ss_pred -CCCCCcceEEecccceeeeEEEee-----eeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCC
Q 022074 191 -HPCDQSVATYKGHSVLRTLIRCHF-----SPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~ 263 (303)
...+..+..++-...... ...+. ...++++++++++| .|+.|++||+++++++. .+.+|..+|++++|+|+
T Consensus 258 ~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~ 335 (355)
T d1nexb2 258 SAAADGSIRGWDANDYSRK-FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335 (355)
T ss_dssp EECTTSEEEEEETTTCCEE-EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred eeeccccccccccccccee-cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence 112223333332221111 11111 11245677766665 58999999999999874 46789999999999986
Q ss_pred CCeEEEEeCCCCEEEeec
Q 022074 264 QPMLVSSSWDGDVVRWEF 281 (303)
Q Consensus 264 ~~~las~s~Dg~i~~Wd~ 281 (303)
.++++++.||++.+|.+
T Consensus 336 -~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 336 -TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp -EEEEEEESSSCEEEEEE
T ss_pred -eEEEEEECCCcEEEEEE
Confidence 57889999999766543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=3.2e-23 Score=178.61 Aligned_cols=207 Identities=13% Similarity=0.199 Sum_probs=140.3
Q ss_pred eEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcE
Q 022074 73 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAI 152 (303)
Q Consensus 73 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v 152 (303)
...++.+|.+.|++++|+| ++++|+||+.||+|++||.. ++.....+.+|...|.+++|+|++.++++++.|+.+
T Consensus 47 ~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSY----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETT----TTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecc----cceeEEEEecccccEEeeEeeccceeeeeeccccee
Confidence 3456889999999999975 57899999999999999975 345566788899999999999999999999999999
Q ss_pred EEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccccee-eeEE----EeeeeeeeCCCeEEEE
Q 022074 153 KLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR-TLIR----CHFSPVYSTGQKYIYT 227 (303)
Q Consensus 153 ~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~lat 227 (303)
++|+.....................................+............. .... ......+.+...++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence 9999765332211110000000000000000000000000000000000000000 0000 0011224567889999
Q ss_pred EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 228 GSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
|+.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++++.|+.+++|++...
T Consensus 202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~ 258 (340)
T d1tbga_ 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence 999999999999999999999999999999999999999999999999999998754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=3.3e-24 Score=183.84 Aligned_cols=269 Identities=12% Similarity=0.092 Sum_probs=166.7
Q ss_pred CchhhccccccccccCcCcc-cccCCCcccceEEEEEcCCC-CEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEE
Q 022074 12 SGTMESLANVTEIHDGLDFS-AADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 89 (303)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g-~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~ 89 (303)
+|+.|..+.||++-.+.... .....+|..+|.+++|++++ ..|++|+.||+|++|++..+........+........+
T Consensus 28 s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 107 (342)
T d1yfqa_ 28 ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRI 107 (342)
T ss_dssp EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEE
T ss_pred EEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccc
Confidence 35678899999886554322 22224799999999999864 57999999999999999988776665555544444433
Q ss_pred ccCCCcEEEEecCCCeEEEEcCccccCCCccceeeccccc--CeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccc
Q 022074 90 GDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 90 ~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~ 167 (303)
.......+++++.++++++||++..............+.. ......+.+.+..+++++.|+.|++||++.........
T Consensus 108 ~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 187 (342)
T d1yfqa_ 108 CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187 (342)
T ss_dssp EEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEE
T ss_pred cccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceee
Confidence 3445678999999999999998643222222222222221 23344456677899999999999999997643322110
Q ss_pred cCccceeeece-eeeCCCCCccccC-CCCCcceE-----------------Eeccc---ceeeeEEEeeeeeeeCCCeEE
Q 022074 168 LGFRSYEWDYR-WMDYPPQARDLKH-PCDQSVAT-----------------YKGHS---VLRTLIRCHFSPVYSTGQKYI 225 (303)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~---~~~~~~~~~~~~~~s~~~~~l 225 (303)
.... ...... ....+.....+.. ..+..+.. +..+. .............|+|++++|
T Consensus 188 ~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 266 (342)
T d1yfqa_ 188 EESG-LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp EECS-CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred eecc-cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEE
Confidence 0000 000000 0000100000000 00000000 00000 000000011234588999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecC
Q 022074 226 YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFP 282 (303)
Q Consensus 226 atg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~ 282 (303)
|+|+.||.|++||+.+++++..+..+ .++..++|+|++++|++|+.|+..++|...
T Consensus 267 asg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred EEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 99999999999999999999888643 356678899999999999999999988753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.88 E-value=1.2e-21 Score=170.35 Aligned_cols=262 Identities=11% Similarity=0.011 Sum_probs=167.3
Q ss_pred cCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEc
Q 022074 11 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 90 (303)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~ 90 (303)
++++....+.||+.-+|.. .-..+|...|.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 60 ~~~~~g~~v~v~d~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 60 HGTREGDFLGIYDYRTGKA---EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp EEETTEEEEEEEETTTCCE---EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEcCCCCEEEEEECCCCcE---EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhc
Confidence 3333334567776644332 2336899999999999999999999999999999999998887788888899999997
Q ss_pred cCCCcEEEE----------ecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccc
Q 022074 91 DESGHLIYS----------GSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 91 ~~~~~~l~s----------~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~ 160 (303)
| ++++|+. +..++.+++||... . ....+..|...+..+.++++|++|++++.|+.+++||....
T Consensus 137 p-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~----~-~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 137 D-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG----R-KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp T-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT----T-EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred c-ceeeeeeeccccccceeeccccceeeecccc----C-ceeeecccccccccccccCCCCEEEEEeCCCceEccccccc
Confidence 6 4777764 34566789999752 2 22334456677888899999999999999999999997543
Q ss_pred cCCcccccCccceeee---ceeeeCCCCCccccCC------CCCcceEEecccc-eeee------EEEeeeeeeeCCCeE
Q 022074 161 SSNASCNLGFRSYEWD---YRWMDYPPQARDLKHP------CDQSVATYKGHSV-LRTL------IRCHFSPVYSTGQKY 224 (303)
Q Consensus 161 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~------~~~~~~~~~s~~~~~ 224 (303)
..............+. .....+.+....+... ....+..+.-... ...+ ........+++...+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (360)
T d1k32a3 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290 (360)
T ss_dssp CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred ceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence 2111100000000000 0000111111110000 0000111100000 0000 011111223344556
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCCC
Q 022074 225 IYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNG 285 (303)
Q Consensus 225 latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~~ 285 (303)
+++++.++.|++||+.+++.. .|.+.|.+++|||||++|++++.||+|++||++...
T Consensus 291 ~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 291 YQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347 (360)
T ss_dssp HHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred EEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence 788899999999999887643 234569999999999999999999999999987653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=1.4e-20 Score=159.30 Aligned_cols=166 Identities=26% Similarity=0.336 Sum_probs=137.0
Q ss_pred EEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEE
Q 022074 74 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIK 153 (303)
Q Consensus 74 ~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~ 153 (303)
...+.+|.+.|++++|+| ++++|+||+.||+|++||+. +++....+.+|...|.++.+++++.++++++.++.+.
T Consensus 10 ~~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~----~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~ 84 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYE----TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 84 (317)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETT----TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCC
T ss_pred cEEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECC----CCCEEEEEeCCCCcEEEEeeecccccccccccccccc
Confidence 346889999999999975 57899999999999999985 3456778889999999999999999999999999999
Q ss_pred EEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCe
Q 022074 154 LWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSC 233 (303)
Q Consensus 154 lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~ 233 (303)
+|+........ .+.++.... ....+++++.++++++.|+.
T Consensus 85 ~~~~~~~~~~~----------------------------------~~~~~~~~~------~~~~~~~~~~~~~~~~~d~~ 124 (317)
T d1vyhc1 85 LWDFQGFECIR----------------------------------TMHGHDHNV------SSVSIMPNGDHIVSASRDKT 124 (317)
T ss_dssp EEETTSSCEEE----------------------------------CCCCCSSCE------EEEEECSSSSEEEEEETTSE
T ss_pred ccccccccccc----------------------------------ccccccccc------eeeeccCCCceEEeeccCcc
Confidence 99875422100 000111000 11235678899999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 234 VYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 234 i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+++||+.+++.+..+.+|...+.+++|+|++++|++++.|+.+++|+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 175 (317)
T d1vyhc1 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175 (317)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred eeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence 999999999999999999999999999999999999999999999998653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.4e-19 Score=154.93 Aligned_cols=208 Identities=23% Similarity=0.301 Sum_probs=132.4
Q ss_pred EECCCCceEEEEecccCCeE-EEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE
Q 022074 66 YDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI 144 (303)
Q Consensus 66 wd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 144 (303)
|+..+-+....+.+|.+.|. ++.+ ++++|+||+.||+|++||+. ++++...+.+|...|.+++++++ +|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s~~~~---~g~~l~sgs~Dg~i~vWd~~----~~~~~~~~~~h~~~V~~v~~~~~--~l~ 71 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAV----TGKCLRTLVGHTGGVWSSQMRDN--III 71 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETT----TCCEEEECCCCSSCEEEEEEETT--EEE
T ss_pred CCCCCCCcCEEECCcCCceEEEEEE---CCCEEEEEeCCCeEEEEECC----CCCEEEEEeCCCCCEEEEEeCCC--ccc
Confidence 44445555667889998875 4444 36799999999999999975 45567788899999999999764 999
Q ss_pred EEeCCCcEEEEEcccccCCcccccCccce--------------------eeecee------eeCCCC---------Cccc
Q 022074 145 SNGKDQAIKLWDIRKMSSNASCNLGFRSY--------------------EWDYRW------MDYPPQ---------ARDL 189 (303)
Q Consensus 145 s~~~D~~v~lWdl~~~~~~~~~~~~~~~~--------------------~~~~~~------~~~~~~---------~~~~ 189 (303)
+++.|+.+++|+................. .++... ...... ...+
T Consensus 72 s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d2ovrb2 72 SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV 151 (342)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEE
T ss_pred cceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceee
Confidence 99999999999976532111110000000 000000 000000 0000
Q ss_pred cCCCCCcceEEecccce-eeeEEEe--eeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCe
Q 022074 190 KHPCDQSVATYKGHSVL-RTLIRCH--FSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPM 266 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 266 (303)
....+..+..++..... ......+ ....+++++.++++|+.||.|++||+.+++.+..+..|...+.++++++ ++
T Consensus 152 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~ 229 (342)
T d2ovrb2 152 SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI 229 (342)
T ss_dssp EEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TE
T ss_pred eecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CE
Confidence 00001111111111000 0000000 0112345788999999999999999999999999999999999888865 69
Q ss_pred EEEEeCCCCEEEeecCCC
Q 022074 267 LVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 267 las~s~Dg~i~~Wd~~~~ 284 (303)
|++++.|+.|++||+...
T Consensus 230 l~s~s~d~~i~iwd~~~~ 247 (342)
T d2ovrb2 230 LVSGNADSTVKIWDIKTG 247 (342)
T ss_dssp EEEEETTSCEEEEETTTC
T ss_pred EEEEcCCCEEEEEecccc
Confidence 999999999999998654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.84 E-value=1.3e-19 Score=157.23 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=145.1
Q ss_pred eEEEEEcC-CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCC--CeEEEEcCccccCCC
Q 022074 42 IFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--NLCKVWDRRCLNVKG 118 (303)
Q Consensus 42 v~~l~~s~-~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~d--g~v~lWd~~~~~~~~ 118 (303)
+++-.||| ||+++++++ +|.|++||+.++.... ..|...|.+++|+| +++.|++++.+ ..|++||.+.
T Consensus 5 ~~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~--~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~----- 75 (360)
T d1k32a3 5 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--VPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRT----- 75 (360)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--CSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTT-----
T ss_pred hhcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE--ccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCC-----
Confidence 34567999 999999876 5689999998887543 47999999999986 47777766544 3799999752
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
.....+..|...+..++|+|++++|++++.++.+++|++...... .
T Consensus 76 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~----------------------------------~ 121 (360)
T d1k32a3 76 GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT----------------------------------V 121 (360)
T ss_dssp CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE----------------------------------E
T ss_pred CcEEEeeCCCceEEeeeecccccccceecccccccccccccccee----------------------------------e
Confidence 234456789999999999999999999999999999998642210 0
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEE----------eCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTG----------SHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg----------~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
.+..+.. ....+.|+|++++|+.+ ..++.+++||..+++... +..|...+..++|+|||++|+
T Consensus 122 ~~~~~~~------~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~ 194 (360)
T d1k32a3 122 IERSREA------MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLY 194 (360)
T ss_dssp EEECSSS------CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEE
T ss_pred eeecccc------cccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEE
Confidence 1111110 01124477888888754 456679999999887654 445777899999999999999
Q ss_pred EEeCCCCEEEeecCC
Q 022074 269 SSSWDGDVVRWEFPG 283 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~ 283 (303)
+++.|+.+.+|+...
T Consensus 195 ~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 195 YLSYRSLDPSPDRVV 209 (360)
T ss_dssp EEESCCCCCEECSSS
T ss_pred EEeCCCceEcccccc
Confidence 999999999998643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=6.9e-20 Score=155.05 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=128.1
Q ss_pred ceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCc
Q 022074 72 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQA 151 (303)
Q Consensus 72 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~ 151 (303)
++...+.+|.+.|++++|++ |+||+.||+|++||+.. ...+|...|.++++.++ ..+++++.|++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~-~~~~s~s~D~~ 68 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKA-QEYSSISWDDT 68 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCST-TCCEEEETTTE
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCC-CeEEEEeeccc
Confidence 45667889999999999964 89999999999999641 23579999999998865 46899999999
Q ss_pred EEEEEcccccCCcccc---c---C--------ccceeeec------eeeeCC-------CCCccccCC--CCCcceEEec
Q 022074 152 IKLWDIRKMSSNASCN---L---G--------FRSYEWDY------RWMDYP-------PQARDLKHP--CDQSVATYKG 202 (303)
Q Consensus 152 v~lWdl~~~~~~~~~~---~---~--------~~~~~~~~------~~~~~~-------~~~~~~~~~--~~~~~~~~~~ 202 (303)
+++|++.......... . + .....+.. ...... +....+... ....+..+.-
T Consensus 69 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~ 148 (287)
T d1pgua2 69 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 148 (287)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred cccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeec
Confidence 9999876432111000 0 0 00000000 000000 000111000 0111222211
Q ss_pred cccee-eeE-----EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEECCC----------CC
Q 022074 203 HSVLR-TLI-----RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVA-ALKYHTSPVRDCSWHPS----------QP 265 (303)
Q Consensus 203 ~~~~~-~~~-----~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-~~~~h~~~I~~v~~sp~----------~~ 265 (303)
..... ... .......|+|++++|++|+.||.|++||+.+++... .+..|..+|++++|+|+ +.
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 228 (287)
T d1pgua2 149 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228 (287)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred cccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence 10000 000 011234588999999999999999999999988654 46789999999999985 45
Q ss_pred eEEEEeCCCCEEEeecCCC
Q 022074 266 MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 266 ~las~s~Dg~i~~Wd~~~~ 284 (303)
+|+||+.|++|++||+...
T Consensus 229 ~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 229 LVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp EEEEEETTSCEEEEESSCT
T ss_pred eeEeecCCCeEEEEECCCC
Confidence 8999999999999998643
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.81 E-value=3.5e-17 Score=138.22 Aligned_cols=255 Identities=13% Similarity=0.111 Sum_probs=160.3
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCC
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 93 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 93 (303)
-+..+.||+.-+|.-. ...+.| .....++|+|||++|+ +++.++.|++||+.+++....+..+. .+..++++++.
T Consensus 10 ~~~~v~v~D~~t~~~~-~~i~~g--~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~ 85 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVT-ATIPVG--SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDG 85 (301)
T ss_dssp TTTEEEEEETTTTEEE-EEEECS--SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEE-EEEECC--CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccccc
Confidence 3456788887665422 222222 2468899999999875 66789999999999998877776654 56888897665
Q ss_pred CcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEcccccCCcccccCccc
Q 022074 94 GHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDIRKMSSNASCNLGFRS 172 (303)
Q Consensus 94 ~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl~~~~~~~~~~~~~~~ 172 (303)
...++++..++.+++|+.. ..+....+ .+......+.+++++..++ ++..++.+.+|+..............
T Consensus 86 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (301)
T d1l0qa2 86 KQVYVTNMASSTLSVIDTT----SNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-- 158 (301)
T ss_dssp SEEEEEETTTTEEEEEETT----TTEEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS--
T ss_pred ccccccccccceeeecccc----cceeeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC--
Confidence 5567777888999999975 22333333 3445667888999998864 56678899999987543222111100
Q ss_pred eeeeceeeeCCCCCccccCCC-C-CcceEEecccc-eeeeEE---EeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCe
Q 022074 173 YEWDYRWMDYPPQARDLKHPC-D-QSVATYKGHSV-LRTLIR---CHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGE 243 (303)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~~~~~~---~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~ 243 (303)
....+.+.+....+.... + ........... ...... ......+++++..++.++ .++.|++||..+++
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~ 235 (301)
T d1l0qa2 159 ---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (301)
T ss_dssp ---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred ---CceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCe
Confidence 011122222222211111 0 11111111100 001111 112334677887766554 45789999999999
Q ss_pred EEEEeecCCCCeEEEEECCCCCeE-EEEeCCCCEEEeecCCC
Q 022074 244 QVAALKYHTSPVRDCSWHPSQPML-VSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~~~~~h~~~I~~v~~sp~~~~l-as~s~Dg~i~~Wd~~~~ 284 (303)
.+..+..+ ..+.+++|||||++| ++++.|++|++||+...
T Consensus 236 ~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 236 ITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 88887654 468999999999975 68888999999998654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=4.1e-19 Score=159.67 Aligned_cols=262 Identities=14% Similarity=0.044 Sum_probs=152.3
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEE--EEe---cccCCeEEE
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL--RIL---AHTSDVNTV 87 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~--~~~---~h~~~v~~l 87 (303)
++-+..+.||+.-+|.... .-+.| ..+.+++|||||+++++++.|++|++||+.+++... ++. +|...+..+
T Consensus 38 ~~~dg~v~vwD~~t~~~~~-~l~~g--~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 38 LRDAGQIALVDGDSKKIVK-VIDTG--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp ETTTTEEEEEETTTCSEEE-EEECC--SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EcCCCEEEEEECCCCcEEE-EEeCC--CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 3446778888887765332 22233 258999999999999999999999999999887432 222 344455566
Q ss_pred EEccCCCcEE-EEecCCCeEEEEcCccccCC------------------Cccc---------------------------
Q 022074 88 CFGDESGHLI-YSGSDDNLCKVWDRRCLNVK------------------GKPA--------------------------- 121 (303)
Q Consensus 88 ~~~~~~~~~l-~s~s~dg~v~lWd~~~~~~~------------------~~~~--------------------------- 121 (303)
+|+|+ ++++ +++..++++++||....... ....
T Consensus 115 ~~spD-G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 115 FKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp STTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred eecCC-CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence 66654 6655 55568999999996521100 0000
Q ss_pred ------eeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccccCccc-----eeee------ceeeeCC
Q 022074 122 ------GVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCNLGFRS-----YEWD------YRWMDYP 183 (303)
Q Consensus 122 ------~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~~~~~~-----~~~~------~~~~~~~ 183 (303)
....++...+..+.++++++++++++ .+..+.++|+...........+... ..+. .......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence 00012333445677788887766554 5566777776643322211111000 0000 0000000
Q ss_pred CCCccc---------cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEE-------EeCCCeEEEEECCCCeEEEE
Q 022074 184 PQARDL---------KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYT-------GSHDSCVYVYDLVSGEQVAA 247 (303)
Q Consensus 184 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lat-------g~~dg~i~iwd~~~~~~~~~ 247 (303)
.+.... ..........+.+|... .....|+|++++|++ ++.|++|++||+.+++...+
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~------v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~ 347 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGG------SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSC------CCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred CCceEEEeeccccccccccceEeEEEecCCCc------eeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence 000000 00001122233333211 123458999999994 56789999999999876544
Q ss_pred e---------ecCCCCeEEEEECCCCCeE-EEE----eCCCCEEEeecCCC
Q 022074 248 L---------KYHTSPVRDCSWHPSQPML-VSS----SWDGDVVRWEFPGN 284 (303)
Q Consensus 248 ~---------~~h~~~I~~v~~sp~~~~l-as~----s~Dg~i~~Wd~~~~ 284 (303)
+ ..|...|..++|||||+++ +++ +.|++|++||....
T Consensus 348 ~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 398 (426)
T ss_dssp EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred EeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence 3 2456679999999999965 442 46888999997654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=5.4e-18 Score=141.67 Aligned_cols=200 Identities=18% Similarity=0.331 Sum_probs=124.3
Q ss_pred EecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEE
Q 022074 77 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWD 156 (303)
Q Consensus 77 ~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWd 156 (303)
...|...|.|+.| ++++|+||+.||+|++||+. +.+....+.+|.+.|.++++ ++++|++++.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~----~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKN----TLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESS----SCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECC----CCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence 3457788998876 36899999999999999975 45567788999999999887 578999999999999999
Q ss_pred cccccCCcccccCccc--------------------eeeeceee-------eCCCCCccccC-----------CCCCcce
Q 022074 157 IRKMSSNASCNLGFRS--------------------YEWDYRWM-------DYPPQARDLKH-----------PCDQSVA 198 (303)
Q Consensus 157 l~~~~~~~~~~~~~~~--------------------~~~~~~~~-------~~~~~~~~~~~-----------~~~~~~~ 198 (303)
++.............. ..|+.... ........+.. ..+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 161 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCcee
Confidence 8754221111000000 00000000 00000000000 0000000
Q ss_pred EEecccc-eeeeEEEeee--eeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 199 TYKGHSV-LRTLIRCHFS--PVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 199 ~~~~~~~-~~~~~~~~~~--~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
.++.... .......+.. ..+++++.++++++.||.|++||+.+.+.+..+.+|...+.. +++++.+|++++.||.
T Consensus 162 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~ 239 (293)
T d1p22a2 162 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK 239 (293)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC
T ss_pred eecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE
Confidence 0100000 0000000111 124567788999999999999999999988888888888764 5678999999999999
Q ss_pred EEEeecCCCCcc
Q 022074 276 VVRWEFPGNGEA 287 (303)
Q Consensus 276 i~~Wd~~~~~~~ 287 (303)
|++||+......
T Consensus 240 i~iwd~~~~~~~ 251 (293)
T d1p22a2 240 IKVWDLVAALDP 251 (293)
T ss_dssp EEEEEHHHHTST
T ss_pred EEEEECCCCccc
Confidence 999998765443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=1.6e-16 Score=135.98 Aligned_cols=261 Identities=10% Similarity=0.003 Sum_probs=155.2
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEecccC-----CeEE
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHTS-----DVNT 86 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~h~~-----~v~~ 86 (303)
++-|..+.||+.-++.--.......+...+.+++|+|||++++ +++.++.|++||+.+++....+..+.. .+..
T Consensus 7 ~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T d1pbyb_ 7 PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp EETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred EcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceee
Confidence 3456677777775554221222233445577899999999874 567899999999999998777665543 3457
Q ss_pred EEEccCCCcEEEEec------------CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEE
Q 022074 87 VCFGDESGHLIYSGS------------DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKL 154 (303)
Q Consensus 87 l~~~~~~~~~l~s~s------------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~l 154 (303)
++|++ +++.++++. .+..+.+||.. .......+. +...+..+.++++|+++++++.| +.+
T Consensus 87 v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~ 158 (337)
T d1pbyb_ 87 AALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAE----TLSRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHV 158 (337)
T ss_dssp EEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETT----TTEEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEE
T ss_pred EEEcC-CCcEEEEeecCCcceeeeccccccceeecccc----CCeEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cce
Confidence 78875 466666665 35677778764 222233332 34557788899999999998754 678
Q ss_pred EEcccccCCcccccCc--cceeeeceeeeCCCCCc------------------cccCCCCCcceEEecccceeeeE----
Q 022074 155 WDIRKMSSNASCNLGF--RSYEWDYRWMDYPPQAR------------------DLKHPCDQSVATYKGHSVLRTLI---- 210 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~---- 210 (303)
||.............. ....+........+... .........+..++.........
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 9876532211111000 00000000000000000 00000000111111111100000
Q ss_pred --EEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 211 --RCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 211 --~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
...+...+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|||||++|++++.|++|.+||....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 011223456778777655 5899999999999988875 5667899999999999999999999999998753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.74 E-value=1.8e-16 Score=136.15 Aligned_cols=232 Identities=9% Similarity=-0.018 Sum_probs=141.7
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcE-EEEecCCCeEEEEcCccccCCCccce
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGKPAG 122 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~-l~s~s~dg~v~lWd~~~~~~~~~~~~ 122 (303)
++|+++++++++++.|++|.+||+++++...++. .|...+..++|+|+ +++ ++++..++.|++||+... +...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~----~~~~ 76 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTC----KNTF 76 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTT----EEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccC----eeee
Confidence 4688999999999999999999999999877765 45667889999765 555 567788999999998632 2222
Q ss_pred eec------ccccCeEEEEeCCCCCEEEEEe------------CCCcEEEEEcccccCCccccc--------------Cc
Q 022074 123 VLM------GHLEGITFIDSRGDGRYLISNG------------KDQAIKLWDIRKMSSNASCNL--------------GF 170 (303)
Q Consensus 123 ~~~------~h~~~v~~~~~~~~~~~l~s~~------------~D~~v~lWdl~~~~~~~~~~~--------------~~ 170 (303)
.+. .+...+..+++++||++++.++ .+..+.+||............ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T d1jmxb_ 77 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156 (346)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred eecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC
Confidence 221 1223455788999999987765 478888998765322111100 00
Q ss_pred cc-------eeeec------eeee---------CCCCCccccCCC--CCcceE-------------------------Ee
Q 022074 171 RS-------YEWDY------RWMD---------YPPQARDLKHPC--DQSVAT-------------------------YK 201 (303)
Q Consensus 171 ~~-------~~~~~------~~~~---------~~~~~~~~~~~~--~~~~~~-------------------------~~ 201 (303)
.- ..++. .... +.+....+.... ...+.. ++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 00 00000 0000 001111110000 000000 00
Q ss_pred cccce--eeeEE----EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC
Q 022074 202 GHSVL--RTLIR----CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD 275 (303)
Q Consensus 202 ~~~~~--~~~~~----~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~ 275 (303)
..... ..... ......+++++.+++.+. ++.|++||..+++.+..+. +...+.+++|||||++|++++.|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~ 314 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND 314 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred CCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 00000 00000 111223455666666554 4679999999999888776 4457999999999999999999999
Q ss_pred EEEeecCC
Q 022074 276 VVRWEFPG 283 (303)
Q Consensus 276 i~~Wd~~~ 283 (303)
|++||...
T Consensus 315 v~v~D~~t 322 (346)
T d1jmxb_ 315 LAVFNPDT 322 (346)
T ss_dssp EEEEETTT
T ss_pred EEEEECcc
Confidence 99999864
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.73 E-value=1.3e-16 Score=143.07 Aligned_cols=106 Identities=12% Similarity=-0.025 Sum_probs=81.6
Q ss_pred EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC-ccceeecccccCe
Q 022074 53 ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHLEGI 131 (303)
Q Consensus 53 ~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~~~v 131 (303)
.+++.+.||+|+|||+.+++...++..| ..+..++|+| +++++++++.|++|++||+....... ..+....+|...+
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 5677889999999999999988888776 4689999976 58899999999999999986332111 1122233566667
Q ss_pred EEEEeCCCCCEE-EEEeCCCcEEEEEcccc
Q 022074 132 TFIDSRGDGRYL-ISNGKDQAIKLWDIRKM 160 (303)
Q Consensus 132 ~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~ 160 (303)
.++.++|||+++ +++..++.+++||....
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence 778889999986 55568999999998754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.69 E-value=5.1e-16 Score=139.73 Aligned_cols=204 Identities=9% Similarity=-0.018 Sum_probs=134.9
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC-ccceeecccc
Q 022074 50 DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-KPAGVLMGHL 128 (303)
Q Consensus 50 ~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~-~~~~~~~~h~ 128 (303)
+.-.+++.+.||+|.|||+.+++...++..+ ..+..++|+| +++++++++.|++|++||+...+... ..+....+|.
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~ 108 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 108 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC
Confidence 3334688899999999999999998888766 4689999976 58999999999999999986332111 1122233566
Q ss_pred cCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEeccccee
Q 022074 129 EGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLR 207 (303)
Q Consensus 129 ~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (303)
..+.+..++|||++| ++++.++.+++||............. ... .. ...+.....
T Consensus 109 ~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~----~~~-------~~-----------~~~~~~~~~-- 164 (432)
T d1qksa2 109 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR----GMT-------YD-----------EQEYHPEPR-- 164 (432)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC----EEC-------TT-----------TCCEESCCC--
T ss_pred CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccC----Ccc-------cc-----------ceeccCCCc--
Confidence 666777889999976 78889999999998754322111000 000 00 000000000
Q ss_pred eeEEEeeeeeeeCCCeE-EEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEECCCCCeEEEEeCC-CCEEEeecCCC
Q 022074 208 TLIRCHFSPVYSTGQKY-IYTGSHDSCVYVYDLVSGEQVAALK-YHTSPVRDCSWHPSQPMLVSSSWD-GDVVRWEFPGN 284 (303)
Q Consensus 208 ~~~~~~~~~~~s~~~~~-latg~~dg~i~iwd~~~~~~~~~~~-~h~~~I~~v~~sp~~~~las~s~D-g~i~~Wd~~~~ 284 (303)
.. ...++++++. +++...++.|.+||..+++...... .+...+.+++|+||++++++++.+ ..+.+||....
T Consensus 165 -~~----~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 165 -VA----AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp -EE----EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred -ee----EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 00 1125666655 4667788999999998877544332 355678999999999977666654 56777776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=9.4e-15 Score=124.91 Aligned_cols=267 Identities=14% Similarity=0.116 Sum_probs=147.6
Q ss_pred hhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEe---cccCCeEEEEE
Q 022074 14 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRIL---AHTSDVNTVCF 89 (303)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~---~h~~~v~~l~~ 89 (303)
+-+..|+||..-.+....-...-.|...+..|+|+|||++|++++ .|+.|++|++.......++. .+...+..++|
T Consensus 11 ~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~ 90 (333)
T d1ri6a_ 11 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST 90 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred CCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence 445678888763333221112235667799999999999986655 58999999997764332222 33455778999
Q ss_pred ccCCCcEEEEec-CCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEe-CCCcEEEEEcccccCCcccc
Q 022074 90 GDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNG-KDQAIKLWDIRKMSSNASCN 167 (303)
Q Consensus 90 ~~~~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~D~~v~lWdl~~~~~~~~~~ 167 (303)
+|+ +++|++++ .++.|.+|+..... .........+...+.++.+++++++++.++ .+..+.+|+...........
T Consensus 91 spD-g~~l~v~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (333)
T d1ri6a_ 91 DHQ-GQFVFVGSYNAGNVSVTRLEDGL--PVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 167 (333)
T ss_dssp CTT-SSEEEEEETTTTEEEEEEEETTE--EEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred cCC-CCEEeecccCCCceeeecccccc--ceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee
Confidence 764 77777776 47789999754211 111222334556677888999999887776 45678999876432111000
Q ss_pred cCcc--ceeeeceeeeCCCCCccccCCC--CCc--ceEEecccc-ee------------eeEEEeeeeeeeCCCeEEEE-
Q 022074 168 LGFR--SYEWDYRWMDYPPQARDLKHPC--DQS--VATYKGHSV-LR------------TLIRCHFSPVYSTGQKYIYT- 227 (303)
Q Consensus 168 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~-~~------------~~~~~~~~~~~s~~~~~lat- 227 (303)
.... ......+.+.+.+....+.... ... +..+..... .. ..........+++++++++.
T Consensus 168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~ 247 (333)
T d1ri6a_ 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247 (333)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence 0000 0000001111111111110000 000 000000000 00 00001112346778776555
Q ss_pred EeCCCeEEEEECCCCeEEE---EeecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeecCC
Q 022074 228 GSHDSCVYVYDLVSGEQVA---ALKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEFPG 283 (303)
Q Consensus 228 g~~dg~i~iwd~~~~~~~~---~~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~~~ 283 (303)
+..++.+.+|++....... ....+...+.+++|||||++|++++ .++.|++|++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 248 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 5578899999987543222 2233456688999999999876665 568899997753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=5.5e-15 Score=132.87 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=93.2
Q ss_pred hccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceE--EEEe---cccCCeEEEEEc
Q 022074 16 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRIL---AHTSDVNTVCFG 90 (303)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~--~~~~---~h~~~v~~l~~~ 90 (303)
+..+.||+.-+|.-. ..-+.|+ .+..++|||||+++++++.|++|++||+.+++.. .++. .|.+.+....|+
T Consensus 41 ~g~v~v~D~~t~~v~-~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 41 AGQIALIDGSTYEIK-TVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp TTEEEEEETTTCCEE-EEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CCEEEEEECCCCcEE-EEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 455677776555433 2333444 5999999999999999999999999999887632 2222 343444455565
Q ss_pred cCCCcE-EEEecCCCeEEEEcCccccCCCccceeecc-----------cccCeEEEEeCCCCCEE-EEEeCCCcEEEEEc
Q 022074 91 DESGHL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLMG-----------HLEGITFIDSRGDGRYL-ISNGKDQAIKLWDI 157 (303)
Q Consensus 91 ~~~~~~-l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl 157 (303)
| ++++ +++++.+++|++||.... ++...+.+ +.....++.+++++..+ ++...++.|.+||.
T Consensus 118 p-DG~~l~vs~~~~~~v~i~d~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 118 W-EDKYAIAGAYWPPQYVIMDGETL----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp C-TTTEEEEEEEETTEEEEEETTTC----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred C-CCCEEEEEcCCCCeEEEEeCccc----cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 4 4665 578888999999997532 22322222 33445677889988876 56677899999997
Q ss_pred ccc
Q 022074 158 RKM 160 (303)
Q Consensus 158 ~~~ 160 (303)
...
T Consensus 193 ~~~ 195 (432)
T d1qksa2 193 TDL 195 (432)
T ss_dssp TCS
T ss_pred cCC
Confidence 643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.63 E-value=2.9e-13 Score=117.79 Aligned_cols=256 Identities=9% Similarity=-0.094 Sum_probs=141.7
Q ss_pred hhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceEEEEecccCCe
Q 022074 15 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLSLRILAHTSDV 84 (303)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~~~h~~~v 84 (303)
.+.-+.|++.-+|.-. ... .++..+ .+.|+|||+++++++ .++.|++||+.+++....+..+....
T Consensus 45 ~~~~v~v~D~~tg~~~-~~~-~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~ 120 (373)
T d2madh_ 45 AIIQQWVLDAGSGSIL-GHV-NGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred CCceEEEEECCCCCEE-EEE-eCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce
Confidence 3344566665555433 222 223322 689999999999875 35789999999998877666555443
Q ss_pred E-------EEEEccCCCcEEE--EecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEE
Q 022074 85 N-------TVCFGDESGHLIY--SGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKL 154 (303)
Q Consensus 85 ~-------~l~~~~~~~~~l~--s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~l 154 (303)
. .+.|+++ ++.++ ....++.+.+|+... . ....+.....++.++++++. +++.+.|+++.+
T Consensus 121 ~~~~~~~~~~~~s~d-g~~~~v~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~ 191 (373)
T d2madh_ 121 FDVGPYSWMNANTPN-NADLLFFQFAAGPAVGLVVQGG----S----SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred eEeccCCCcEEEEeC-CCcEEEEEEcCCCceEEeeccC----C----eEEEEeccceeEEEecCCCcEEEEEcCCCeEEE
Confidence 3 3445443 33322 223455667776431 1 12234445567778888765 578889999999
Q ss_pred EEcccccCCcccccCccceeee--ceeeeCCCCCccccCCCCCcceEEe-------------cccceeeeEEE----eee
Q 022074 155 WDIRKMSSNASCNLGFRSYEWD--YRWMDYPPQARDLKHPCDQSVATYK-------------GHSVLRTLIRC----HFS 215 (303)
Q Consensus 155 Wdl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~----~~~ 215 (303)
||.................... ............+....+..+..+. ........... ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (373)
T d2madh_ 192 TDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ 271 (373)
T ss_pred EEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCccee
Confidence 9976533221110000000000 0000011111111111111111110 00000000000 000
Q ss_pred eee----------eCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEeecCC
Q 022074 216 PVY----------STGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 216 ~~~----------s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~Wd~~~ 283 (303)
..+ ..++..+++...++.+.+||..+++.+..+. +...+.+++|||||+ ++++++.|++|++||...
T Consensus 272 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~t 350 (373)
T d2madh_ 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred eEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence 012 2334456677788899999999999888775 566799999999998 468999999999999876
Q ss_pred C
Q 022074 284 N 284 (303)
Q Consensus 284 ~ 284 (303)
.
T Consensus 351 g 351 (373)
T d2madh_ 351 G 351 (373)
T ss_pred C
Confidence 5
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.50 E-value=4.1e-13 Score=115.74 Aligned_cols=262 Identities=14% Similarity=0.062 Sum_probs=141.9
Q ss_pred EEEEEccCchhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEEEee----------CCCeEEEEECCCCceE
Q 022074 5 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDDCIYVYDLEANKLS 74 (303)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~ 74 (303)
+...+.+.+.+..-+.||+.-+|.-. .....|. ...++|||||++|++.+ .|+.|++||+.+++..
T Consensus 16 ~~v~~~~~~~~~~~v~v~D~~tg~~~-~~~~~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~ 91 (355)
T d2bbkh_ 16 VYVNDPAHFAAVTQQFVIDGEAGRVI-GMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT 91 (355)
T ss_dssp EEEEECGGGCSSEEEEEEETTTTEEE-EEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred EEEEecccCCCcCeEEEEECCCCcEE-EEEECCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEE
Confidence 34455666667777777777555422 2222222 23689999999888754 4789999999999877
Q ss_pred EEEeccc-------CCeEEEEEccCCCcEEEEe--cCCCeEEEEcCccccCCCccceeecccc-------cCeEEEEeCC
Q 022074 75 LRILAHT-------SDVNTVCFGDESGHLIYSG--SDDNLCKVWDRRCLNVKGKPAGVLMGHL-------EGITFIDSRG 138 (303)
Q Consensus 75 ~~~~~h~-------~~v~~l~~~~~~~~~l~s~--s~dg~v~lWd~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~ 138 (303)
..+..+. .....++|+++ ++.++.+ +.+..+.+||.... +....+..+. .....+.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (355)
T d2bbkh_ 92 ADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGK----AFKRMLDVPDCYHIFPTAPDTFFMHCR 166 (355)
T ss_dssp EEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTT----EEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred EEEecCCcceeecCCCCceEEEecC-CCeeEEecCCCCceeeeeecCCC----cEeeEEecCCcceEeecCCcceEEEcC
Confidence 6654433 23356788764 5555544 45678999987532 2222222111 1223345556
Q ss_pred CCCEEEE-EeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE-------------eccc
Q 022074 139 DGRYLIS-NGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY-------------KGHS 204 (303)
Q Consensus 139 ~~~~l~s-~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 204 (303)
++..++. ...++.+.+++.............. ..+. +.....+....+..+..+ .++.
T Consensus 167 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 167 DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH--PAYS------QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSC--CEEE------TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred CCCEEEEEecCCCeEEEEecccccceecceeee--cccc------CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc
Confidence 6655543 3344555555544322111100000 0000 000000000000001000 0000
Q ss_pred cee----eeEEEeeeeeeeCCCeEEEEEeCC----------CeEEEEECCCCeEEEEeecCCCCeEEEEECCCCC--eEE
Q 022074 205 VLR----TLIRCHFSPVYSTGQKYIYTGSHD----------SCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQP--MLV 268 (303)
Q Consensus 205 ~~~----~~~~~~~~~~~s~~~~~latg~~d----------g~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~--~la 268 (303)
... ..........+++++..++....+ ..|++||..+++.+..+.. ...+.+++|||||+ +++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v 317 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYA 317 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEE
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEE
Confidence 000 000000112356777776665443 4799999999998888764 34689999999997 467
Q ss_pred EEeCCCCEEEeecCCC
Q 022074 269 SSSWDGDVVRWEFPGN 284 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~~ 284 (303)
+++.|++|++||.+..
T Consensus 318 ~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESG 333 (355)
T ss_dssp EETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEECCCC
Confidence 8888999999998754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.48 E-value=2e-11 Score=101.98 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=124.0
Q ss_pred EEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcE-EEEecCCCeEEEEcCccccCCCccceeecccccCeEE
Q 022074 55 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL-IYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITF 133 (303)
Q Consensus 55 ~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~-l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~ 133 (303)
++++.|++|.+||+++++...++. ....+..++|+|+ +++ +++++.++.|++||+. +.+....+..+. ....
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~-~g~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~----t~~~~~~~~~~~-~~~~ 78 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIP-VGSNPMGAVISPD-GTKVYVANAHSNDVSIIDTA----TNNVIATVPAGS-SPQG 78 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTT-SSEEEEEEGGGTEEEEEETT----TTEEEEEEECSS-SEEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEE-CCCCceEEEEeCC-CCEEEEEECCCCEEEEEECC----CCceeeeeeccc-cccc
Confidence 456789999999999998776654 3456788999765 555 4677889999999986 334445555444 4577
Q ss_pred EEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEE
Q 022074 134 IDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRC 212 (303)
Q Consensus 134 ~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (303)
+.+++++..+ +++..++.+++||....... ..+..+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~------ 118 (301)
T d1l0qa2 79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVA----------------------------------GTVKTGKSP------ 118 (301)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEE----------------------------------EEEECSSSE------
T ss_pred cccccccccccccccccceeeecccccceee----------------------------------eeccccccc------
Confidence 8899998865 45667889999997642210 011111100
Q ss_pred eeeeeeeCCCeEE-EEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCC-EEEeecC
Q 022074 213 HFSPVYSTGQKYI-YTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGD-VVRWEFP 282 (303)
Q Consensus 213 ~~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~-i~~Wd~~ 282 (303)
....++++++.+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+.. +.+|+..
T Consensus 119 -~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 119 -LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred -eEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccccccccccc
Confidence 112356777765 45667899999999999988887654 45789999999998887776644 5555543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=1.6e-11 Score=104.03 Aligned_cols=220 Identities=11% Similarity=0.045 Sum_probs=128.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEE-EEecCCCeEEEEcCccccCCCccceeeccc-
Q 022074 52 RELVAGSSDDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGH- 127 (303)
Q Consensus 52 ~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l-~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h- 127 (303)
+++++++.|++|+|||+++++....+..+ ...+..++|+|+ ++++ ++++.++.|++||+.. ++....+..+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t----~~~~~~~~~~~ 76 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVT----GETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTT----CCEEEEEECCB
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCC----CcEEEEEecCC
Confidence 58999999999999999999888777543 356789999764 6655 6778899999999863 3333333333
Q ss_pred ----ccCeEEEEeCCCCCEEEEEeC------------CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 128 ----LEGITFIDSRGDGRYLISNGK------------DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 128 ----~~~v~~~~~~~~~~~l~s~~~------------D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
...+..++++++++++++++. +..+.+||.............. ....+.+.++.+.+..
T Consensus 77 ~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~ 151 (337)
T d1pbyb_ 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-----QITMLAWARDGSKLYG 151 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-----SCCCEEECTTSSCEEE
T ss_pred CcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC-----CceEEEEcCCCCEEEE
Confidence 233456789999999987764 5677788876533211111100 0011222222222211
Q ss_pred CCCCcceEEecccc-eeeeEEE-------eee--------------------eeeeCCCeEEEEEeCCCeEEEEECCCCe
Q 022074 192 PCDQSVATYKGHSV-LRTLIRC-------HFS--------------------PVYSTGQKYIYTGSHDSCVYVYDLVSGE 243 (303)
Q Consensus 192 ~~~~~~~~~~~~~~-~~~~~~~-------~~~--------------------~~~s~~~~~latg~~dg~i~iwd~~~~~ 243 (303)
... ....++.... ....... .+. .....+......+..++.+.+||..+++
T Consensus 152 ~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T d1pbyb_ 152 LGR-DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp ESS-SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred EcC-CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence 110 0000000000 0000000 000 0000111112233446679999999887
Q ss_pred EEE-EeecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 244 QVA-ALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 244 ~~~-~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
... .+..+...+..++++|++.+++.+ ++.+++||+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~ 270 (337)
T d1pbyb_ 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN 270 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT
T ss_pred EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCC
Confidence 543 455677889999999999998877 489999998754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.34 E-value=3.7e-11 Score=102.20 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=65.2
Q ss_pred chhhccccccccccCcCcccccCCCcccceEEEEEcCCCCEEE-EeeCCCeEEEEECCCCceEEEEeccc------CCeE
Q 022074 13 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVYDLEANKLSLRILAHT------SDVN 85 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-sgs~Dg~v~lwd~~~~~~~~~~~~h~------~~v~ 85 (303)
++-+..++||+.-+|.-. ..-.-+|...+.+++|+|||++++ +++.++.|++||+.+++....+.... ..+.
T Consensus 14 ~~~~~~v~v~D~~t~~~~-~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~ 92 (346)
T d1jmxb_ 14 TNYPNNLHVVDVASDTVY-KSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92 (346)
T ss_dssp EETTTEEEEEETTTTEEE-EEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS
T ss_pred EcCCCEEEEEECCCCCEE-EEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE
Confidence 445567889998776422 222245566788999999999875 45678999999999998765554322 2345
Q ss_pred EEEEccCCCcEEEEec------------CCCeEEEEcCc
Q 022074 86 TVCFGDESGHLIYSGS------------DDNLCKVWDRR 112 (303)
Q Consensus 86 ~l~~~~~~~~~l~s~s------------~dg~v~lWd~~ 112 (303)
.+++++ +++.++.++ .++.+.+||..
T Consensus 93 ~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (346)
T d1jmxb_ 93 SFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130 (346)
T ss_dssp CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred EEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence 677765 455655543 35667777643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=9.3e-11 Score=101.98 Aligned_cols=231 Identities=6% Similarity=-0.123 Sum_probs=121.7
Q ss_pred EEEEcCCCCEEEEee----------CCCeEEEEECCCCceEEEEecccC-------CeEEEEEccCCCcEEEEe-cCCCe
Q 022074 44 SLKFSTDGRELVAGS----------SDDCIYVYDLEANKLSLRILAHTS-------DVNTVCFGDESGHLIYSG-SDDNL 105 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs----------~Dg~v~lwd~~~~~~~~~~~~h~~-------~v~~l~~~~~~~~~l~s~-s~dg~ 105 (303)
.+.|+|||+.|++.+ .|++|++||..+++....+..+.. ....++|+++ +++++.+ ..+++
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD-Gk~l~va~~~~~~ 147 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS-SACLLFFLFGSSA 147 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT-SSCEEEEECSSSC
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC-CCEEEEEeCCCCe
Confidence 488999999988865 377899999999987766554322 2346889765 5655555 46799
Q ss_pred EEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCccccc--CccceeeeceeeeCC
Q 022074 106 CKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNL--GFRSYEWDYRWMDYP 183 (303)
Q Consensus 106 v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~--~~~~~~~~~~~~~~~ 183 (303)
+.+||+.. .+....+..+...... ......++..+.|+++.+|++........... .+.............
T Consensus 148 v~~~d~~~----~~~~~~~~~~~~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (368)
T d1mdah_ 148 AAGLSVPG----ASDDQLTKSASCFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN 220 (368)
T ss_dssp EEEEEETT----TEEEEEEECSSCCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET
T ss_pred EEEEECCC----CcEeEEeeccCcceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc
Confidence 99999753 2223333222222111 11233555666677777776543211100000 000000000000001
Q ss_pred CCCccccCCCCCcceEE--eccccee---------------eeEEEeeeeeeeCCCeEEEEEeCC---------CeEEEE
Q 022074 184 PQARDLKHPCDQSVATY--KGHSVLR---------------TLIRCHFSPVYSTGQKYIYTGSHD---------SCVYVY 237 (303)
Q Consensus 184 ~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~~~~~s~~~~~latg~~d---------g~i~iw 237 (303)
+....+... ...+... ....... ..........+++++..++....+ ..|++|
T Consensus 221 ~~g~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~ 299 (368)
T d1mdah_ 221 YPGMLVWAV-ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp TTTEEEECB-SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred cCcEEEEec-CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEE
Confidence 111110000 0000000 0000000 000000112345666555443222 359999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEECCCCC--eEEEEeCCCCEEEeecCCC
Q 022074 238 DLVSGEQVAALKYHTSPVRDCSWHPSQP--MLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 238 d~~~~~~~~~~~~h~~~I~~v~~sp~~~--~las~s~Dg~i~~Wd~~~~ 284 (303)
|..+++.+..+. +...+.+++|||||+ +++++..|++|++||....
T Consensus 300 D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 300 TASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp ESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred ECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence 999999887776 345789999999997 4678888999999998654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.3e-10 Score=96.93 Aligned_cols=190 Identities=9% Similarity=0.121 Sum_probs=119.3
Q ss_pred EEEeeCCCeEEEEECCCCce--EEEEecccCCeEEEEEccCCCcEE-EEecCCCeEEEEcCccccCCCccceeecccccC
Q 022074 54 LVAGSSDDCIYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLI-YSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEG 130 (303)
Q Consensus 54 l~sgs~Dg~v~lwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l-~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~ 130 (303)
+++++.|++|++|+++.... ..+...|.+.+..++|+|+ +++| +++..|+.|++|++.......... ....+...
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~-~~~~~~~~ 84 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFA-AESALPGS 84 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEECSSC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEe-eecccCCC
Confidence 46777999999999976532 2344578889999999865 6666 555668999999975221111111 11223345
Q ss_pred eEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEEecccceeee
Q 022074 131 ITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTL 209 (303)
Q Consensus 131 v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (303)
+..++++|+|++|++++. ++.+++|+.......... ....+..
T Consensus 85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~~---- 128 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV--------------------------------DVVEGLD---- 128 (333)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE--------------------------------EEECCCT----
T ss_pred ceEEEEcCCCCEEeecccCCCceeeeccccccceecc--------------------------------cccCCCc----
Confidence 678999999999988875 778899986532110000 0000000
Q ss_pred EEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEE------eecCCCCeEEEEECCCCCeEEEEe-CCCCEEEeec
Q 022074 210 IRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAA------LKYHTSPVRDCSWHPSQPMLVSSS-WDGDVVRWEF 281 (303)
Q Consensus 210 ~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~------~~~h~~~I~~v~~sp~~~~las~s-~Dg~i~~Wd~ 281 (303)
......+++++++++.++ .+..|.+|+......... ...+......++|++++.++.... ..+...+|+.
T Consensus 129 --~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~ 206 (333)
T d1ri6a_ 129 --GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL 206 (333)
T ss_dssp --TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred --cceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence 001223678888877766 567799999876532211 112345678999999999766554 5566777775
Q ss_pred CC
Q 022074 282 PG 283 (303)
Q Consensus 282 ~~ 283 (303)
..
T Consensus 207 ~~ 208 (333)
T d1ri6a_ 207 KD 208 (333)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.16 E-value=6.2e-09 Score=89.67 Aligned_cols=197 Identities=13% Similarity=0.015 Sum_probs=122.0
Q ss_pred CCcccceEEEEEcCCCCEEEEe-----eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEec---------
Q 022074 36 GGYSFGIFSLKFSTDGRELVAG-----SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS--------- 101 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sg-----s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s--------- 101 (303)
.++..++.+++++|||+++++. +.++.|.+||..+++...++..+... .++|+| ++++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKG 93 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCccccc
Confidence 5788899999999999998765 24567999999999988777665543 688976 577777664
Q ss_pred -CCCeEEEEcCccccCCCccceeecccccCeE-------EEEeCCCCCEEEEE--eCCCcEEEEEcccccCCcccccCcc
Q 022074 102 -DDNLCKVWDRRCLNVKGKPAGVLMGHLEGIT-------FIDSRGDGRYLISN--GKDQAIKLWDIRKMSSNASCNLGFR 171 (303)
Q Consensus 102 -~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~-------~~~~~~~~~~l~s~--~~D~~v~lWdl~~~~~~~~~~~~~~ 171 (303)
.++.|++||... .++...+..+..... .+.++++++.++.. ..++.+.+|+.......
T Consensus 94 ~~~~~v~v~D~~t----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~-------- 161 (373)
T d2madh_ 94 KRTDYVEVFDPVT----FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD-------- 161 (373)
T ss_pred ccceEEEEEECCC----CcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE--------
Confidence 467899999863 333434433433332 23445555544333 23445555554321100
Q ss_pred ceeeeceeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCe-EEEEEeCCCeEEEEECCCCeEEEEeec
Q 022074 172 SYEWDYRWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQK-YIYTGSHDSCVYVYDLVSGEQVAALKY 250 (303)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~ 250 (303)
.. ........++++++ .+++.+.|+.+.+||...++.......
T Consensus 162 --------------------------~~----------~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 162 --------------------------QL----------LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred --------------------------EE----------eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 00 00001122455555 457788999999999988876554432
Q ss_pred C------CCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 251 H------TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 251 h------~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+ ......+.+++++.++ ..+.++.+.+|+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 244 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAA 244 (373)
T ss_pred eccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCC
Confidence 2 2234456677766555 4556888999987643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=2.3e-09 Score=91.60 Aligned_cols=232 Identities=14% Similarity=0.033 Sum_probs=126.7
Q ss_pred EEcCCCCEEEEee-----CCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEe----------cCCCeEEEEc
Q 022074 46 KFSTDGRELVAGS-----SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG----------SDDNLCKVWD 110 (303)
Q Consensus 46 ~~s~~g~~l~sgs-----~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~----------s~dg~v~lWd 110 (303)
+.+|||+++++.. .+++|.+||..+++...++..+.. ..++|+|+ ++.|+.+ +.|+.|++||
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpD-g~~l~v~~~~~~~~~~g~~d~~v~v~D 84 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADD-GSFIAHASTVFSRIARGERTDYVEVFD 84 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCC-CCEEEEEeCCCccccccCCCCEEEEEE
Confidence 4579999988753 466799999999988777765543 46899865 5555543 3478999999
Q ss_pred CccccCCCccceeeccc-------ccCeEEEEeCCCCCEEEEEe--CCCcEEEEEcccccCCcccccCccceeee---ce
Q 022074 111 RRCLNVKGKPAGVLMGH-------LEGITFIDSRGDGRYLISNG--KDQAIKLWDIRKMSSNASCNLGFRSYEWD---YR 178 (303)
Q Consensus 111 ~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s~~--~D~~v~lWdl~~~~~~~~~~~~~~~~~~~---~~ 178 (303)
.... ++...+..+ ......+.+++++++++..+ .+..+.+||+.................+. ..
T Consensus 85 ~~t~----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 85 PVTL----LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp TTTC----CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred CCCC----CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 8632 222222211 12234567899999887664 56789999987543322211110000000 00
Q ss_pred eeeCCCCCccccC--CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEE--EEeecCC--
Q 022074 179 WMDYPPQARDLKH--PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQV--AALKYHT-- 252 (303)
Q Consensus 179 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~--~~~~~h~-- 252 (303)
...+.++.+.+.. ........................+.+++++..++.++.++.+++|+...++.. .....+.
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence 1111111111100 000011111100000000000112234556677888999999999999877532 1222221
Q ss_pred --------CCeEEEEECCCCCeEEEEeCC----------CCEEEeecCCC
Q 022074 253 --------SPVRDCSWHPSQPMLVSSSWD----------GDVVRWEFPGN 284 (303)
Q Consensus 253 --------~~I~~v~~sp~~~~las~s~D----------g~i~~Wd~~~~ 284 (303)
.....++++|++..++.+..+ ..+.+||....
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~ 290 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG 290 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC
Confidence 234568889998876665544 36889997654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.69 E-value=2.8e-07 Score=82.04 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=92.4
Q ss_pred ccccccccCcCcc---cccCCCcccceEEEEEcCCCCEEEEeeC---------CCeEEEEECCCCceEEEEecccCCeEE
Q 022074 19 ANVTEIHDGLDFS---AADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNT 86 (303)
Q Consensus 19 ~~~~~~~~~~~~~---~~~~~~~~~~v~~l~~s~~g~~l~sgs~---------Dg~v~lwd~~~~~~~~~~~~h~~~v~~ 86 (303)
+-++.+-+|.... .....+|..+|.++.|||||++|+.++. ++.+.|||+.+++. ..+..|...+..
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~ 116 (470)
T d2bgra1 38 ILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQW 116 (470)
T ss_dssp EEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEE
T ss_pred EEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccc
Confidence 3466666666421 2233577788999999999999998753 56789999999874 457778889999
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCC-----ccceeecc---------cccCeEEEEeCCCCCEEEEEeCCCc-
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG-----KPAGVLMG---------HLEGITFIDSRGDGRYLISNGKDQA- 151 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~-----~~~~~~~~---------h~~~v~~~~~~~~~~~l~s~~~D~~- 151 (303)
+.|+|+ ++.++.. .+..+++|+........ .....+.+ .......+.|+|||++|+....|.+
T Consensus 117 ~~~SPD-G~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~ 194 (470)
T d2bgra1 117 VTWSPV-GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE 194 (470)
T ss_dssp EEECSS-TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred cccccC-cceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCc
Confidence 999864 7777765 46789999865321100 00001111 1123445679999999999887644
Q ss_pred EEEEEcc
Q 022074 152 IKLWDIR 158 (303)
Q Consensus 152 v~lWdl~ 158 (303)
++.|++.
T Consensus 195 v~~~~~~ 201 (470)
T d2bgra1 195 VPLIEYS 201 (470)
T ss_dssp CCEEEEE
T ss_pred CceEEEE
Confidence 7777654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.69 E-value=1.1e-07 Score=84.80 Aligned_cols=109 Identities=14% Similarity=0.129 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-----ccCCeEEEEEccCCCcEEEEec---------CCCeEE
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-----HTSDVNTVCFGDESGHLIYSGS---------DDNLCK 107 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~s---------~dg~v~ 107 (303)
-..+.|.++++++.. .|+.+.+||+.+++....+.. |...|.++.|+| +++.|+.++ .++.+.
T Consensus 19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 19 LYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEE
Confidence 346789999987764 578899999999986644433 346789999976 477777664 356788
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
+||+.. .....+..|.+.+..+.|+|||+.+|.. .++.+.+|++..
T Consensus 96 l~d~~~-----~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~ 141 (470)
T d2bgra1 96 IYDLNK-----RQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN 141 (470)
T ss_dssp EEETTT-----TEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred EEECCC-----CcccccccCCccccccccccCcceeeEe-ecccceEEECCC
Confidence 999752 2233466788889999999999998885 567888888654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=9.9e-06 Score=65.79 Aligned_cols=212 Identities=13% Similarity=0.088 Sum_probs=114.2
Q ss_pred cCcCcccccCCCcccceEEEEEcCCCCEEEEeeCCC---eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC
Q 022074 26 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 102 (303)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~sgs~Dg---~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~ 102 (303)
+|.+..... -+...+.+-+|||||+.||-..... .+.+.+..++.. ..+..+.+......|+++...+++....
T Consensus 27 dG~~~~~l~--~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~ 103 (269)
T d2hqsa1 27 DGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSK 103 (269)
T ss_dssp TSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred CCCCcEEEe--cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeec
Confidence 566553221 2234477889999999998765433 467777776654 3455677788888998654444444444
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCE-EEEEeCCCcEEEEEcccccCCcccccCccceeeeceeee
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRY-LISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMD 181 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~ 181 (303)
++...++..... ..... .............+++++.. +++...++...+|.........
T Consensus 104 ~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~----------------- 163 (269)
T d2hqsa1 104 TGSLNLYVMDLA--SGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP----------------- 163 (269)
T ss_dssp TSSCEEEEEETT--TCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----------------
T ss_pred CCccceeecccc--cccce-eeeeccccccccccccccccceecccccCCceEeeeecccccc-----------------
Confidence 444443332111 11111 11112222233334555444 4555566666666543211000
Q ss_pred CCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCC---eEEEEECCCCeEEEEeecCCCCeEEE
Q 022074 182 YPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDS---CVYVYDLVSGEQVAALKYHTSPVRDC 258 (303)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg---~i~iwd~~~~~~~~~~~~h~~~I~~v 258 (303)
..... .......+.++|+++.++..+.++ .+.+.|...+.. .+..+.......
T Consensus 164 ----------------~~~~~------~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p 219 (269)
T d2hqsa1 164 ----------------QRITW------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETP 219 (269)
T ss_dssp ----------------EECCC------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEE
T ss_pred ----------------eeeec------ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccce
Confidence 00000 001122456788888888765443 455556555443 233355667888
Q ss_pred EECCCCCeEEEEeC---CCCEEEeecCCC
Q 022074 259 SWHPSQPMLVSSSW---DGDVVRWEFPGN 284 (303)
Q Consensus 259 ~~sp~~~~las~s~---Dg~i~~Wd~~~~ 284 (303)
.|||||+.|+-.+. ...|.++++.+.
T Consensus 220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 99999997764433 356788888765
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.65 E-value=3.2e-07 Score=78.99 Aligned_cols=241 Identities=7% Similarity=-0.030 Sum_probs=118.6
Q ss_pred chhhccccccccccCcCcccccC-----CCcccceEEEEEcCCCCEEEEee-CCCeEEEEECCCCceEEEEecccCCeEE
Q 022074 13 GTMESLANVTEIHDGLDFSAADD-----GGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNT 86 (303)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~l~~s~~g~~l~sgs-~Dg~v~lwd~~~~~~~~~~~~h~~~v~~ 86 (303)
|+.+..+.||+.-+|.....+.. .........++|+|||++++++. .++.+.+||+.+++....+..+....
T Consensus 92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~-- 169 (368)
T d1mdah_ 92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH-- 169 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--
T ss_pred cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--
Confidence 34455567777766553211110 01111234689999999998876 57899999999998776665443321
Q ss_pred EEEccCCCcEEEEecCCCeEEEEcCccccCCCc--cceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc
Q 022074 87 VCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGK--PAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA 164 (303)
Q Consensus 87 l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~ 164 (303)
+. +.....++..+.||++.+|++........ ....+..+...+....+.+++..+.+. ++.+.++++.......
T Consensus 170 ~~--~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~ 245 (368)
T d1mdah_ 170 IH--PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATM 245 (368)
T ss_dssp CE--EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEE
T ss_pred Ec--cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEE
Confidence 11 22345777788899998888653221110 001122233333445556666555443 3445555543321110
Q ss_pred ccccCc-----cceeee---ceeeeCCCCCccccC----------CCCCcceEEeccc--ceeee--EEEeeeeeeeCCC
Q 022074 165 SCNLGF-----RSYEWD---YRWMDYPPQARDLKH----------PCDQSVATYKGHS--VLRTL--IRCHFSPVYSTGQ 222 (303)
Q Consensus 165 ~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~~--~~~~~~~~~s~~~ 222 (303)
...... ....+. ...+...+....+.. .....+..++... ....+ -.......++||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG 325 (368)
T d1mdah_ 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG 325 (368)
T ss_dssp ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSS
T ss_pred EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCC
Confidence 000000 000000 000111111111100 0001111222111 01111 1112335689998
Q ss_pred e--EEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 022074 223 K--YIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSW 260 (303)
Q Consensus 223 ~--~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~ 260 (303)
+ +++++..|+.|++||..+++.+..++.... .+.+++
T Consensus 326 ~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred CEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 6 356777899999999999999998875544 344444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.65 E-value=5.5e-06 Score=69.89 Aligned_cols=213 Identities=10% Similarity=0.119 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccC----CeEEEEEccCCCcEEEEecC---------------
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS----DVNTVCFGDESGHLIYSGSD--------------- 102 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~l~s~s~--------------- 102 (303)
-..+.|.++|+.++++...+.+..+|.+++..........+ ..+.+++.+ ++++.+|-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~ 151 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSS
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccC
Confidence 46799999999888887777788898876643221111111 356778854 4677666321
Q ss_pred CCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCC-----EEEEEeCCCcEEEEEcccccCCcccccCccceeeec
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGR-----YLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDY 177 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~ 177 (303)
+|.|..++. .++.. .+......-+.+++++++. ++++.+..+.|..||+......... .
T Consensus 152 ~G~v~~~~~-----dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~-----~----- 215 (314)
T d1pjxa_ 152 FGSIYCFTT-----DGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-----K----- 215 (314)
T ss_dssp CEEEEEECT-----TSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-----E-----
T ss_pred CceEEEEee-----cCcee-EeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee-----e-----
Confidence 223333332 11111 1112222334566666543 5566677788888886532110000 0
Q ss_pred eeeeCCCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 022074 178 RWMDYPPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRD 257 (303)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~ 257 (303)
.....+.. .....+ ...+..+|.+.++....+.|.+||.+.++.+..+..+....++
T Consensus 216 ~~~~~~~~----------~~~~pd-------------GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~ 272 (314)
T d1pjxa_ 216 VWGHIPGT----------HEGGAD-------------GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSN 272 (314)
T ss_dssp EEEECCCC----------SSCEEE-------------EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEE
T ss_pred EEEEcccc----------ccccce-------------eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEE
Confidence 00000000 000000 1124467888788778899999999888877777766678899
Q ss_pred EEECCCCC-eEEEEeCCCCEEEeecCCCCccCCCCcccccc
Q 022074 258 CSWHPSQP-MLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIR 297 (303)
Q Consensus 258 v~~sp~~~-~las~s~Dg~i~~Wd~~~~~~~~~~~~~~~~~ 297 (303)
++|.|+++ +++|.+.++.|...+++. +-.+.+.+++|
T Consensus 273 ~afg~d~~~lyVt~~~~g~i~~~~~~~---~G~~~~~~~~~ 310 (314)
T d1pjxa_ 273 LHFKPQTKTIFVTEHENNAVWKFEWQR---NGKKQYCETLK 310 (314)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEECSS---CBCCCGGGSCT
T ss_pred EEEeCCCCEEEEEECCCCcEEEEECCC---CChhhhccccc
Confidence 99999987 678888888888887653 22344555554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=1e-05 Score=67.60 Aligned_cols=224 Identities=12% Similarity=0.025 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
+..++++|||+.+++...+++|+.++.... ...+......+..+++.+ +++++++...++.+..|+.... .....
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~--~~~~~ 104 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKS--DGTVE 104 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECT--TSCEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccc--cccee
Confidence 678999999999999888999988876544 334556667899999965 5788888888888888875321 11111
Q ss_pred eee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCc-------ccccCccceeeeceeeeCCCCCccccCCC
Q 022074 122 GVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNA-------SCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 122 ~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
... .........+.+.++++++++.+.++.+..+|........ .......... ....+.............
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ngi~~~~~~l~~~~~~ 183 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP-AANGLKRFGNFLYVSNTE 183 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC-SEEEEEEETTEEEEEETT
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc-ccccccccCCceeeecCC
Confidence 111 1123446788889999988888888888887765321000 0000000000 000000000000000000
Q ss_pred CCcceEEecccc--ee--eeEE---EeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeE-EEEeecCCCCeEEEEE---CC
Q 022074 194 DQSVATYKGHSV--LR--TLIR---CHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQ-VAALKYHTSPVRDCSW---HP 262 (303)
Q Consensus 194 ~~~~~~~~~~~~--~~--~~~~---~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~-~~~~~~h~~~I~~v~~---sp 262 (303)
...+..+..... .. .... ..-...+.++|.+.++...++.|..++...+.. +......-...++++| ++
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~ 263 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEG 263 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTT
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCC
Confidence 111111110000 00 0000 001134677888888888899999998764322 3333334456899999 77
Q ss_pred CCCeEEEEe
Q 022074 263 SQPMLVSSS 271 (303)
Q Consensus 263 ~~~~las~s 271 (303)
|++.|..++
T Consensus 264 D~~~Lyvtt 272 (302)
T d2p4oa1 264 DCTAIYVVT 272 (302)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEC
Confidence 888665443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.62 E-value=8.9e-07 Score=78.03 Aligned_cols=217 Identities=9% Similarity=0.076 Sum_probs=118.8
Q ss_pred EEEeeCCCeEEEEECCCCceEEEEec------------------------------ccCCeEEEEEccCCCcEEE-EecC
Q 022074 54 LVAGSSDDCIYVYDLEANKLSLRILA------------------------------HTSDVNTVCFGDESGHLIY-SGSD 102 (303)
Q Consensus 54 l~sgs~Dg~v~lwd~~~~~~~~~~~~------------------------------h~~~v~~l~~~~~~~~~l~-s~s~ 102 (303)
+++|+.+|.|++|++.+++...++.. |..........+ ++++|+ +...
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~~ 92 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDKA 92 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEETT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcCC
Confidence 66788999999999999987766532 111122222233 366654 5567
Q ss_pred CCeEEEEcCccccCCCccceee-cccccCeEEEEeCCCCC--EEEEEeCCCcEE------------------EEEccccc
Q 022074 103 DNLCKVWDRRCLNVKGKPAGVL-MGHLEGITFIDSRGDGR--YLISNGKDQAIK------------------LWDIRKMS 161 (303)
Q Consensus 103 dg~v~lWd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~--~l~s~~~D~~v~------------------lWdl~~~~ 161 (303)
+..|.++|++..+ ....+ ..+......+.++++++ |++..+. ..+. .+|...+.
T Consensus 93 ~~rVavIDl~t~k----~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~-~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 93 NTRVARIRLDIMK----TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAE-FVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp TTEEEEEETTTTE----EEEEEECTTCCCEEEEEECCSSBCCEEEEEEC-SCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred CCEEEEEECCCCc----EeeEEecCCCCCccceEEeccCCEEEEEeccC-CcccccCcccccccccccceEEeecCccce
Confidence 8899999986332 22222 23456788999999887 4444443 3332 23433222
Q ss_pred CCcccccCccceeeeceeeeCCCCCccccCCCCC--cceEEecc--cceeeeEE--EeeeeeeeCCCeEEEEEeCCCeEE
Q 022074 162 SNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ--SVATYKGH--SVLRTLIR--CHFSPVYSTGQKYIYTGSHDSCVY 235 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~--~~~~~~~s~~~~~latg~~dg~i~ 235 (303)
...+... ......+.+.++.+.+...+.. ....+... .....+.. ......++++|+++..+ .++.+.
T Consensus 168 v~~qI~v-----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~-~~~v~v 241 (441)
T d1qnia2 168 VAWQVIV-----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG-DSKVPV 241 (441)
T ss_dssp EEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT-TCCCCE
T ss_pred eeEEEec-----CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC-CCCcEE
Confidence 1111100 0111223333443332221110 00000000 00001100 01112246788876554 467788
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEECCCCCe-EEEEeCCCCEEEeecCC
Q 022074 236 VYDLVSGEQVAALKYHTSPVRDCSWHPSQPM-LVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 236 iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~-las~s~Dg~i~~Wd~~~ 283 (303)
+++....+.+..+..... ...+++||||++ ++++..++++.+||+..
T Consensus 242 vd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 242 VDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp EECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred EEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 887776666777776655 488999999996 56788999999999864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.60 E-value=3.2e-07 Score=80.92 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=125.6
Q ss_pred cccccccccCcCcccccCCCcccceEEEEEcCCCCE--EEEeeCCC-----------------eEEEEECCCCceEEEEe
Q 022074 18 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LVAGSSDD-----------------CIYVYDLEANKLSLRIL 78 (303)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~--l~sgs~Dg-----------------~v~lwd~~~~~~~~~~~ 78 (303)
-++|++.-++.-- .+.+-++..+...++|+|+|++ ++..+.+. .+..+|..+.....++.
T Consensus 95 rVavIDl~t~k~~-~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 95 RVARIRLDIMKTD-KITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp EEEEEETTTTEEE-EEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred EEEEEECCCCcEe-eEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 3466666444322 2233456678999999999994 44444433 23457887776655544
Q ss_pred cccCCeEEEEEccCCCcEEEEecCCC-eE----------------------------------------EEEcCccccCC
Q 022074 79 AHTSDVNTVCFGDESGHLIYSGSDDN-LC----------------------------------------KVWDRRCLNVK 117 (303)
Q Consensus 79 ~h~~~v~~l~~~~~~~~~l~s~s~dg-~v----------------------------------------~lWd~~~~~~~ 117 (303)
.. +....+.++++ ++++++.+.+. .+ .+++.. .
T Consensus 174 v~-~~p~~v~~spd-Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~----~ 247 (441)
T d1qnia2 174 VD-GNLDNTDADYT-GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG----E 247 (441)
T ss_dssp ES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS----S
T ss_pred cC-CCccceEECCC-CCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc----C
Confidence 33 45677888654 66665554332 11 111110 0
Q ss_pred CccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCc
Q 022074 118 GKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQS 196 (303)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (303)
......+... .....++++|||+++ +++..+++|.+||++++.......+..+
T Consensus 248 ~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~------------------------- 301 (441)
T d1qnia2 248 SEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR------------------------- 301 (441)
T ss_dssp CSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-------------------------
T ss_pred CceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-------------------------
Confidence 0111111111 234568899999987 4567899999999986432111101000
Q ss_pred ceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCC---------Ce-EEEEe-----ecCCCCeEEEEEC
Q 022074 197 VATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVS---------GE-QVAAL-----KYHTSPVRDCSWH 261 (303)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~---------~~-~~~~~-----~~h~~~I~~v~~s 261 (303)
....++.... + ......|.++|....+.+-|..|.-|++.. .+ .+..+ .+|...+.+.+|+
T Consensus 302 -~~~~~~~~~g-l--gplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~ 377 (441)
T d1qnia2 302 -DTIVAEPELG-L--GPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRD 377 (441)
T ss_dssp -GGEEECCBCC-S--CEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTT
T ss_pred -eEEEeecccc-c--CcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccC
Confidence 0000000000 0 001123677888888889999999999741 11 22333 4777778888999
Q ss_pred CCCCeEEEE---eCCCC
Q 022074 262 PSQPMLVSS---SWDGD 275 (303)
Q Consensus 262 p~~~~las~---s~Dg~ 275 (303)
|||++|+++ |-|+-
T Consensus 378 pdGk~l~s~~k~s~dr~ 394 (441)
T d1qnia2 378 ADGKWLVVLSKFSKDRF 394 (441)
T ss_dssp CCCCEEEEEESCCGGGS
T ss_pred CCCcEEEecCccccccC
Confidence 999999999 55543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.38 E-value=7.7e-05 Score=60.60 Aligned_cols=198 Identities=8% Similarity=0.019 Sum_probs=116.4
Q ss_pred cceEEEEEcCCCCEEEEe-eCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCC
Q 022074 40 FGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKG 118 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sg-s~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~ 118 (303)
..-.+|+++++|+..++. +..+.+..++............-......+++.+ +++++++...++.+++++... .
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~----~ 88 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSN----N 88 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCS----C
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecc----c
Confidence 445899999999966654 4567777765544432221112122346778854 577888777777777776321 1
Q ss_pred ccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcce
Q 022074 119 KPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVA 198 (303)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (303)
..... .........+++.++++++++-..+..+..++........ ...
T Consensus 89 ~~~~~-~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-----------------~~~-------------- 136 (260)
T d1rwia_ 89 QTVLP-FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----------------LPF-------------- 136 (260)
T ss_dssp CEECC-CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-----------------CCC--------------
T ss_pred eeeee-eeeeeecccccccccceeEeeccccccccccccccceeee-----------------eee--------------
Confidence 11111 1122446778888888887776666666666543211000 000
Q ss_pred EEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEEeCCCCEEE
Q 022074 199 TYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVR 278 (303)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~ 278 (303)
.+.... ....+.+++.++++...++.|..+|.+.................+++.++++++++-...+.+..
T Consensus 137 --~~~~~p-------~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~ 207 (260)
T d1rwia_ 137 --TGLNDP-------DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVK 207 (260)
T ss_dssp --CSCCSC-------CEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred --cccCCc-------ceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEE
Confidence 000000 01124567788888888899999998754433222244456789999999999988888888888
Q ss_pred eecCC
Q 022074 279 WEFPG 283 (303)
Q Consensus 279 Wd~~~ 283 (303)
++..+
T Consensus 208 ~~~~~ 212 (260)
T d1rwia_ 208 LLAGS 212 (260)
T ss_dssp ECTTC
T ss_pred EeCCC
Confidence 87543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.16 E-value=0.00013 Score=59.20 Aligned_cols=191 Identities=11% Similarity=0.070 Sum_probs=116.0
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPA 121 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~ 121 (303)
...++++++|+.+++....+.+++++..+...... .........+++.+ +++++++-..+..+..++..... .
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~-~~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~-----~ 131 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKT-----Q 131 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC-CCSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSS-----C
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee-eeeeeecccccccc-cceeEeeccccccccccccccce-----e
Confidence 46788999998877776666676665544433221 12234567888854 56777766666677777643111 1
Q ss_pred eee-cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcceEE
Q 022074 122 GVL-MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSVATY 200 (303)
Q Consensus 122 ~~~-~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (303)
... ..-......+++.++++.+++...++.|..+|....... .. . .. .
T Consensus 132 ~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~---~~--------------~---------~~-~---- 180 (260)
T d1rwia_ 132 TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV---VL--------------P---------FT-D---- 180 (260)
T ss_dssp EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE---EC--------------C---------CS-S----
T ss_pred eeeeecccCCcceeeecCCCCEeeeccccccccccccccceee---ee--------------e---------cc-c----
Confidence 111 111233457788899998888888888888886531100 00 0 00 0
Q ss_pred ecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEECCCCCeEEEEeCCCCEEEe
Q 022074 201 KGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL-KYHTSPVRDCSWHPSQPMLVSSSWDGDVVRW 279 (303)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~-~~h~~~I~~v~~sp~~~~las~s~Dg~i~~W 279 (303)
........+.+++.++++....+.|..++...... ..+ ...-.....++++++++++++-..++.|+..
T Consensus 181 ---------~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 181 ---------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp ---------CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred ---------cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence 00001123456788888888888898888754432 222 2233467899999999988887777777765
Q ss_pred e
Q 022074 280 E 280 (303)
Q Consensus 280 d 280 (303)
+
T Consensus 251 ~ 251 (260)
T d1rwia_ 251 T 251 (260)
T ss_dssp C
T ss_pred e
Confidence 5
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.15 E-value=0.0012 Score=53.84 Aligned_cols=197 Identities=14% Similarity=0.194 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecc------cCCeEEEEEccCCCcEEEE-ecCCCeEEEEcCccc
Q 022074 42 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH------TSDVNTVCFGDESGHLIYS-GSDDNLCKVWDRRCL 114 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~l~s-~s~dg~v~lWd~~~~ 114 (303)
-..|+++++|+.+++-..+..|++||.+ ++....+... ...-..+++....+..+++ .+.++.|..++..
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 101 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-- 101 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc--
Confidence 3689999999988887778889999875 4444333211 1123445554443444443 3456677777642
Q ss_pred cCCCccceeec-ccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCC
Q 022074 115 NVKGKPAGVLM-GHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPC 193 (303)
Q Consensus 115 ~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (303)
+.....+. ........+++.+++.++++....+.+.+++.... .
T Consensus 102 ---g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-----~--------------------------- 146 (279)
T d1q7fa_ 102 ---GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-----V--------------------------- 146 (279)
T ss_dssp ---SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----E---------------------------
T ss_pred ---ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-----e---------------------------
Confidence 22232331 22344567778888887777777677777654210 0
Q ss_pred CCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEee--cCCCCeEEEEECCCCCeEEEEe
Q 022074 194 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALK--YHTSPVRDCSWHPSQPMLVSSS 271 (303)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~--~h~~~I~~v~~sp~~~~las~s 271 (303)
+..+........ .....+.+++.++++....+.|++||. +++.+..+. ++......+++.++|+++++-.
T Consensus 147 ---~~~~g~~~~~~~----~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~ 218 (279)
T d1q7fa_ 147 ---LHKFGCSKHLEF----PNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN 218 (279)
T ss_dssp ---EEEEECTTTCSS----EEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred ---eecccccccccc----cceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEEC
Confidence 000000000000 001123456788888888999999997 567776663 3455688999999999887754
Q ss_pred C-CCCEEEeecCCC
Q 022074 272 W-DGDVVRWEFPGN 284 (303)
Q Consensus 272 ~-Dg~i~~Wd~~~~ 284 (303)
. ++.|.+++..+.
T Consensus 219 ~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 219 HNNFNLTIFTQDGQ 232 (279)
T ss_dssp SSSCEEEEECTTSC
T ss_pred CCCcEEEEECCCCC
Confidence 4 446888885543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=0.00053 Score=55.05 Aligned_cols=182 Identities=14% Similarity=0.160 Sum_probs=101.2
Q ss_pred CcccceEEEEEcCCCCEEEEeeC-CCeEEEE--ECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCcc
Q 022074 37 GYSFGIFSLKFSTDGRELVAGSS-DDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRC 113 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sgs~-Dg~v~lw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~ 113 (303)
-+........|+|+|+.++.... ++...++ ...... ...............+.+.....+++...++...+|....
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~ 158 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 158 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeec
Confidence 44567788999999998887653 3333333 222222 2223333333444455555455666666666655554321
Q ss_pred ccCCCccceeecccccCeEEEEeCCCCCEEEEEeC-CCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCC
Q 022074 114 LNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGK-DQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHP 192 (303)
Q Consensus 114 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (303)
.......+..+........+++++..++..+. .+...+|........
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~----------------------------- 206 (269)
T d2hqsa1 159 ---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------------------- 206 (269)
T ss_dssp ---TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-----------------------------
T ss_pred ---ccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-----------------------------
Confidence 11222233334455666789999998876554 445555543321100
Q ss_pred CCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEe---CCCeEEEEECCCCeEEEEeecCCCCeEEEEECCC
Q 022074 193 CDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS---HDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPS 263 (303)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~ 263 (303)
....... .....|.|||||+.|+-.+ ....|+++++..++. ..+....+.+...+|||-
T Consensus 207 ----~~~~~~~-------~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 207 ----VQVLSST-------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp ----EEECCCS-------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred ----ceEeecC-------ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence 0000000 0113466899999887544 345789999976654 455556677889999983
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.06 E-value=0.00046 Score=58.88 Aligned_cols=178 Identities=14% Similarity=0.140 Sum_probs=93.7
Q ss_pred CCeEEEEEccCCCcEEEEec-CCCeEEEEcCccccCCCccceee--cccccCeEEEEeCCCCCEEE-EEeCCCcEEEEEc
Q 022074 82 SDVNTVCFGDESGHLIYSGS-DDNLCKVWDRRCLNVKGKPAGVL--MGHLEGITFIDSRGDGRYLI-SNGKDQAIKLWDI 157 (303)
Q Consensus 82 ~~v~~l~~~~~~~~~l~s~s-~dg~v~lWd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~-s~~~D~~v~lWdl 157 (303)
..+..+.|+|+ ++++++++ ....|.+|+..... ........ .........+.++|+++++. +.-.+++|.+||+
T Consensus 145 ~h~h~v~~sPd-G~~l~v~d~g~d~v~~~~~~~~g-~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPT-ETYLYSADLTANKLWTHRKLASG-EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTS-CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCC-CCEEEEeeCCCCEEEEEEccCCC-ceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 35678999764 66655554 45688888643111 00111111 12335678899999999875 4556899999998
Q ss_pred ccccCCcccccCccceeeeceeeeC-CCCCccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeC------
Q 022074 158 RKMSSNASCNLGFRSYEWDYRWMDY-PPQARDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSH------ 230 (303)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~------ 230 (303)
.......... ...... +....... .....+. .......++|+|++|+++..
T Consensus 223 ~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~-------~~~~~i~~spdG~~lyvsnr~~~~~~ 280 (365)
T d1jofa_ 223 DPATHMPVYT---------HHSFPLIPPGIPDRD------PETGKGL-------YRADVCALTFSGKYMFASSRANKFEL 280 (365)
T ss_dssp CTTTCCEEEE---------EEEEESSCTTCCCBC------TTTSSBS-------EEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred cCCCceEEEE---------eeeeccccccccccc------ccccccc-------CCccceEECCCCCEEEEEcccCCCcc
Confidence 6432111000 000000 00000000 0000000 00011236789999887631
Q ss_pred CCeEEEEECCCCeEEE---Ee---ecCCCCeEEEEECC-CCCeEEEE-eCCCCEEEeecCC
Q 022074 231 DSCVYVYDLVSGEQVA---AL---KYHTSPVRDCSWHP-SQPMLVSS-SWDGDVVRWEFPG 283 (303)
Q Consensus 231 dg~i~iwd~~~~~~~~---~~---~~h~~~I~~v~~sp-~~~~las~-s~Dg~i~~Wd~~~ 283 (303)
.+.|..|+......+. .+ .........++++| +|++|+.+ ..++.|.+|++..
T Consensus 281 ~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 3347777775432121 11 12234568899998 78866544 6779999998754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.97 E-value=0.00054 Score=58.42 Aligned_cols=108 Identities=10% Similarity=-0.006 Sum_probs=66.0
Q ss_pred ceEEEEEcCCCCEEEEeeC-CCeEEEEECCCCc-eE--EEEe--cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccc
Q 022074 41 GIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK-LS--LRIL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCL 114 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~-Dg~v~lwd~~~~~-~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~ 114 (303)
.+.++.|+|||+++++++. ...|.+|+..... .. .... ....+...++|+|+...+.++...+++|.+|+....
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 4789999999998888753 4578888765432 22 1111 234577889997654434466677899999986422
Q ss_pred cCCC-cccee--------------ecccccCeEEEEeCCCCCEEEEEeC
Q 022074 115 NVKG-KPAGV--------------LMGHLEGITFIDSRGDGRYLISNGK 148 (303)
Q Consensus 115 ~~~~-~~~~~--------------~~~h~~~v~~~~~~~~~~~l~s~~~ 148 (303)
.... ..... ...+......+.++|+|++|+++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr 274 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence 1100 00000 0011223456788999999877654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.94 E-value=0.0036 Score=51.95 Aligned_cols=198 Identities=12% Similarity=0.146 Sum_probs=113.2
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC----CCeEEEEcCccccC
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD----DNLCKVWDRRCLNV 116 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~----dg~v~lWd~~~~~~ 116 (303)
.+-.+.|.++|+..++-...+.|+.|+.+++...............+++.+ +++++++... .+.+...+..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~---- 115 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATEN---- 115 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTT----
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCC----
Confidence 346899999999777777889999999888766555555666788999964 5777766532 2233333322
Q ss_pred CCccceeeccc---ccCeEEEEeCCCCCEEEEEeCCCc----EEEEEcccccCCcccccCccceeeeceeeeCCCCCccc
Q 022074 117 KGKPAGVLMGH---LEGITFIDSRGDGRYLISNGKDQA----IKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDL 189 (303)
Q Consensus 117 ~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~D~~----v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (303)
.........+ ......+.+.++|++.++...... -.+|-+ .+..
T Consensus 116 -~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~-------------------------~~dg--- 166 (319)
T d2dg1a1 116 -GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV-------------------------SPDF--- 166 (319)
T ss_dssp -SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE-------------------------CTTS---
T ss_pred -CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE-------------------------eccc---
Confidence 1111111111 123556777888876665322110 001110 0000
Q ss_pred cCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEE-EEEeCCCeEEEEECCCC-eEEE----Ee---ecCCCCeEEEEE
Q 022074 190 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYI-YTGSHDSCVYVYDLVSG-EQVA----AL---KYHTSPVRDCSW 260 (303)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-atg~~dg~i~iwd~~~~-~~~~----~~---~~h~~~I~~v~~ 260 (303)
..+.... .-+.......++++++.| ++-+..+.|+.||+... .... .. .........+++
T Consensus 167 -----~~~~~~~------~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~v 235 (319)
T d2dg1a1 167 -----RTVTPII------QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCI 235 (319)
T ss_dssp -----CCEEEEE------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEE
T ss_pred -----ceeEEEe------eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeE
Confidence 0011000 001111224578888754 55677899999997532 1111 11 111123568999
Q ss_pred CCCCCeEEEEeCCCCEEEeecCC
Q 022074 261 HPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 261 sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
.++|++.++...++.|.+++..+
T Consensus 236 D~~G~l~Va~~~~g~V~~~~p~G 258 (319)
T d2dg1a1 236 DSDDNLYVAMYGQGRVLVFNKRG 258 (319)
T ss_dssp BTTCCEEEEEETTTEEEEECTTS
T ss_pred cCCCCEEEEEcCCCEEEEECCCC
Confidence 99999989888899999999654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.90 E-value=0.0037 Score=50.71 Aligned_cols=196 Identities=11% Similarity=0.137 Sum_probs=118.4
Q ss_pred ceEEEEEcCCC-CEEEE-eeCCCeEEEEECCCCceEEEEe-cccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCC
Q 022074 41 GIFSLKFSTDG-RELVA-GSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVK 117 (303)
Q Consensus 41 ~v~~l~~s~~g-~~l~s-gs~Dg~v~lwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~ 117 (303)
.-..+++..+. ..+++ .+.++.|..++.. +.....+. ........++.. ++++++++....+.+.+++..
T Consensus 71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~----- 143 (279)
T d1q7fa_ 71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN----- 143 (279)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-----
T ss_pred ccccccccccccccceeccCCcccccccccc-ccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEeccC-----
Confidence 34556655543 34443 3345567777664 44333332 233456677775 456777777777788887742
Q ss_pred Cccceee--cccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCC
Q 022074 118 GKPAGVL--MGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQ 195 (303)
Q Consensus 118 ~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (303)
+.....+ ..+......+++.++++.+++....+.|++||..... .+. +...
T Consensus 144 g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~------------~~~-----~g~~---------- 196 (279)
T d1q7fa_ 144 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY------------LRQ-----IGGE---------- 196 (279)
T ss_dssp SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE------------EEE-----ESCT----------
T ss_pred CceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce------------eee-----eccc----------
Confidence 2323322 2344567778888999888899999999999864210 000 0000
Q ss_pred cceEEecccceeeeEEEeeeeeeeCCCeEEEEEe-CCCeEEEEECCCCeEEEEeecC--CCCeEEEEECCCCCeEEEEeC
Q 022074 196 SVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGS-HDSCVYVYDLVSGEQVAALKYH--TSPVRDCSWHPSQPMLVSSSW 272 (303)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~h--~~~I~~v~~sp~~~~las~s~ 272 (303)
+.. . . .....+.+++.++++-. .++.|.+++. +|+.+..+... ....+.+++.|+|+++++ +.
T Consensus 197 ------g~~--~-~---P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~ 262 (279)
T d1q7fa_ 197 ------GIT--N-Y---PIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SK 262 (279)
T ss_dssp ------TTS--C-S---EEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET
T ss_pred ------ccc--c-C---CcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eC
Confidence 000 0 0 00112456788777654 4567999985 68877776533 246899999999986665 57
Q ss_pred CCCEEEeecCCC
Q 022074 273 DGDVVRWEFPGN 284 (303)
Q Consensus 273 Dg~i~~Wd~~~~ 284 (303)
+..|++|..+.-
T Consensus 263 n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 263 DYRLYIYRYVQL 274 (279)
T ss_dssp TTEEEEEECSCC
T ss_pred CCeEEEEEeeee
Confidence 899999998754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.90 E-value=0.001 Score=54.91 Aligned_cols=193 Identities=7% Similarity=0.008 Sum_probs=104.5
Q ss_pred CeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccC
Q 022074 83 DVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSS 162 (303)
Q Consensus 83 ~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~ 162 (303)
.+..+++.+ +++++++...+++|..||.. +. ...+......+..+++.++|+++++...++.+..|++.....
T Consensus 29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-----g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAP-DGTIFVTNHEVGEIVSITPD-----GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECT-TSCEEEEETTTTEEEEECTT-----CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECC-CCCEEEEeCCCCEEEEEeCC-----CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence 467888965 58899999999999888843 11 223434456788999999999999998889998888654221
Q ss_pred CcccccCccceeeeceeeeCCCCCccccCC-CCCcceEEecccceeeeEE------------E---eeeeeeeCCCeEEE
Q 022074 163 NASCNLGFRSYEWDYRWMDYPPQARDLKHP-CDQSVATYKGHSVLRTLIR------------C---HFSPVYSTGQKYIY 226 (303)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~---~~~~~~s~~~~~la 226 (303)
....-.......+ ...+...+....+... ....+..++.......... . .....+. ++.+++
T Consensus 102 ~~~~~~~~~~~~~-~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~-~~~l~~ 179 (302)
T d2p4oa1 102 TVETLLTLPDAIF-LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF-GNFLYV 179 (302)
T ss_dssp CEEEEEECTTCSC-EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-TTEEEE
T ss_pred ceeeccccCCccc-cceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-CCceee
Confidence 1110000000000 0001111111111000 0001111110000000000 0 0001112 345667
Q ss_pred EEeCCCeEEEEECCCCeEEEE--eecCCCCeEEEEECCCCCeEEEEeCCCCEEEeecCCC
Q 022074 227 TGSHDSCVYVYDLVSGEQVAA--LKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGN 284 (303)
Q Consensus 227 tg~~dg~i~iwd~~~~~~~~~--~~~h~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~~ 284 (303)
+....+.|+.++......... .-........++|+++|+++++...++.|..++..+.
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS 239 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred ecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence 778889999998765432211 1112334678999999999999888999999987653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.76 E-value=0.0057 Score=48.72 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred EEcCC--CCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEE-Eec---CCC--eEEEEcCccccCC
Q 022074 46 KFSTD--GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY-SGS---DDN--LCKVWDRRCLNVK 117 (303)
Q Consensus 46 ~~s~~--g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~-s~s---~dg--~v~lWd~~~~~~~ 117 (303)
..+|| |++++-.+ +|.|.+.|+++++.. ++..+.+.....+|+|+ ++.|+ +.. .+. .+.+.+......
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~g~~- 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGEI- 80 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTEE-
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEEecCCce-
Confidence 35688 99877554 556999999988754 56667677888999865 66655 332 222 344445431110
Q ss_pred Ccccee----ecccccCeEEEEeCCCCCEEEEEe
Q 022074 118 GKPAGV----LMGHLEGITFIDSRGDGRYLISNG 147 (303)
Q Consensus 118 ~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~ 147 (303)
+.+.. ............++++|+.|+...
T Consensus 81 -~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 81 -KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp -EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred -EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 11110 111223345677899998887643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.62 E-value=0.012 Score=48.56 Aligned_cols=205 Identities=10% Similarity=0.059 Sum_probs=105.3
Q ss_pred EEEEEcCCCCEEEEeeC-------CCeEEEEECCCCceEEEEeccc----CCeEEEEEccCCCcEEEEecCCCeEEEEcC
Q 022074 43 FSLKFSTDGRELVAGSS-------DDCIYVYDLEANKLSLRILAHT----SDVNTVCFGDESGHLIYSGSDDNLCKVWDR 111 (303)
Q Consensus 43 ~~l~~s~~g~~l~sgs~-------Dg~v~lwd~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~ 111 (303)
-.++|.++|+..++... +|.|..||.+++.......... ..-..+++.+ +++.++.+.....+...|.
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEEET
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEEeC
Confidence 34578999997665432 4678899998886543222211 2345688854 5666666766666777775
Q ss_pred ccccCCCccceeec----ccc-cCeEEEEeCCCCCEEEEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 112 RCLNVKGKPAGVLM----GHL-EGITFIDSRGDGRYLISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 112 ~~~~~~~~~~~~~~----~h~-~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.. .....+. +.. ...+.+.+.++|++.+|.... ....|+...... .+
T Consensus 100 ~g-----~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~-~~~~~~~~~~~~--------------------~~-- 151 (314)
T d1pjxa_ 100 DG-----TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAG-EVAPADYTRSMQ--------------------EK-- 151 (314)
T ss_dssp TS-----CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBC-BCTTSCCCBTTS--------------------SS--
T ss_pred CC-----cEEEEEeccccccccCCCcEEEECCCCCEEEecCcc-Ccccccccceec--------------------cC--
Confidence 31 1111111 111 124567788888777764321 111111000000 00
Q ss_pred ccccCCCCCcceEEecccceeeeEE---EeeeeeeeCCC-----eEEEEEeCCCeEEEEECCCCeEEE------Eeec-C
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIR---CHFSPVYSTGQ-----KYIYTGSHDSCVYVYDLVSGEQVA------ALKY-H 251 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~-----~~latg~~dg~i~iwd~~~~~~~~------~~~~-h 251 (303)
...+..++.......... ......+++++ .+.++.+..+.|+.||+.....+. .+.. +
T Consensus 152 -------~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 224 (314)
T d1pjxa_ 152 -------FGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp -------CEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred -------CceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccc
Confidence 000011100000000000 00112244443 355666788999999875332221 2221 2
Q ss_pred CCCeEEEEECCCCCeEEEEeCCCCEEEeecCC
Q 022074 252 TSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPG 283 (303)
Q Consensus 252 ~~~I~~v~~sp~~~~las~s~Dg~i~~Wd~~~ 283 (303)
......+++.++|++.++....+.|.+||.++
T Consensus 225 ~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp SCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred cccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 22356899999999988888889999999764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.61 E-value=0.013 Score=48.50 Aligned_cols=204 Identities=12% Similarity=0.088 Sum_probs=113.6
Q ss_pred cceEEEEEcCCCCEEEEeeC----CCeEEEEECCCCceEEEEecc--cCCeEEEEEccCCCcEEEEecC------CCeEE
Q 022074 40 FGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKLSLRILAH--TSDVNTVCFGDESGHLIYSGSD------DNLCK 107 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs~----Dg~v~lwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~s~------dg~v~ 107 (303)
.....+++++||+.+++... .+.+...+..++......... ....+.+++.+ ++++.++-.. .+.+.
T Consensus 82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~ 160 (319)
T d2dg1a1 82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVY 160 (319)
T ss_dssp SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEE
T ss_pred CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeE
Confidence 45778999999987776543 234555555555543332221 23467788854 5776665432 22344
Q ss_pred EEcCccccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCC
Q 022074 108 VWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQA 186 (303)
Q Consensus 108 lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (303)
.++.. ......+......-+.++++++++.| ++-+..+.|..||+.......... ... .
T Consensus 161 ~~~~d-----g~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~------~~~-~-------- 220 (319)
T d2dg1a1 161 YVSPD-----FRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF------GAT-I-------- 220 (319)
T ss_dssp EECTT-----SCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE------EEE-E--------
T ss_pred EEecc-----cceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc------cce-e--------
Confidence 44422 22222222233345678899999755 666778899999875321100000 000 0
Q ss_pred ccccCCCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeec------CCCCeEEEEE
Q 022074 187 RDLKHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKY------HTSPVRDCSW 260 (303)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~------h~~~I~~v~~ 260 (303)
.....+... .-...+..+|.+.++....+.|.++|. .|+.+.++.. +...+++++|
T Consensus 221 ----------~~~~~~~~~-------PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~ 282 (319)
T d2dg1a1 221 ----------PYYFTGHEG-------PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQF 282 (319)
T ss_dssp ----------EEECCSSSE-------EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEE
T ss_pred ----------eeccCCccc-------eeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEE
Confidence 000000000 001124567888888888999999996 6888877753 3446889999
Q ss_pred CCCCCeEEEEeC----CCCEEEeecC
Q 022074 261 HPSQPMLVSSSW----DGDVVRWEFP 282 (303)
Q Consensus 261 sp~~~~las~s~----Dg~i~~Wd~~ 282 (303)
.|+...+..... ++.-.+|.++
T Consensus 283 ~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 283 IPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp CTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred eCCCCEEEEEcCCCCcCCceeEEEEe
Confidence 998876555443 2334455443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0035 Score=55.06 Aligned_cols=110 Identities=9% Similarity=-0.007 Sum_probs=67.3
Q ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEeccc---CCeEEEEEccCCCcEEEEe---------cCCCeEEEEcCc
Q 022074 45 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT---SDVNTVCFGDESGHLIYSG---------SDDNLCKVWDRR 112 (303)
Q Consensus 45 l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~---------s~dg~v~lWd~~ 112 (303)
..|.++++++.. ..||.+.+||+.+++....+..+. ..+....++|+ ++.++.. +..+...++|+.
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD-~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCC-CCeEEEEEcccceeEeeccccEEEEEcc
Confidence 358888876654 567889999999887644333322 25667778765 5554443 335677888875
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEEEEEeCCCcEEEEEccc
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKDQAIKLWDIRK 159 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D~~v~lWdl~~ 159 (303)
... ..++.........+....|+|+|+.+|-.. ++.+.+.+...
T Consensus 100 ~~~--~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 100 HGD--PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp SCC--CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred CCc--eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence 221 112221222233455677999999987664 56677776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.052 Score=47.26 Aligned_cols=116 Identities=10% Similarity=0.039 Sum_probs=67.7
Q ss_pred cceEEEEEcCCCCEEEEee---------CCCeEEEEECCCCceEEEEec--ccCCeEEEEEccCCCcEEEEecCCCeEEE
Q 022074 40 FGIFSLKFSTDGRELVAGS---------SDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKV 108 (303)
Q Consensus 40 ~~v~~l~~s~~g~~l~sgs---------~Dg~v~lwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~s~dg~v~l 108 (303)
..+....|||||++++... ..+...++|+.++........ ....+....|+|+ ++.++-.. ++.+.+
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD-G~~iafv~-~~nl~~ 138 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK-GQQLIFIF-ENNIYY 138 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS-TTCEEEEE-TTEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC-CceEEEEe-cceEEE
Confidence 4567788999999988763 357889999999875432111 2234555778765 55554443 456777
Q ss_pred EcCccccC-----CCccceeeccccc---------CeEEEEeCCCCCEEEEEe-CCCcEEEEEc
Q 022074 109 WDRRCLNV-----KGKPAGVLMGHLE---------GITFIDSRGDGRYLISNG-KDQAIKLWDI 157 (303)
Q Consensus 109 Wd~~~~~~-----~~~~~~~~~~h~~---------~v~~~~~~~~~~~l~s~~-~D~~v~lWdl 157 (303)
.+...... .+.....+.|..+ .-.++-|+|||++||... .+..|..+.+
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence 76532110 0000011112111 123566899999998876 3456666654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.43 E-value=0.1 Score=43.38 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=46.7
Q ss_pred CCcccceEEEEEcCCCCEEEEeeCC-CeEEEEECCCCceEEEEec-c-cCCeEEEEEccCCCcEEEEecCC------CeE
Q 022074 36 GGYSFGIFSLKFSTDGRELVAGSSD-DCIYVYDLEANKLSLRILA-H-TSDVNTVCFGDESGHLIYSGSDD------NLC 106 (303)
Q Consensus 36 ~~~~~~v~~l~~s~~g~~l~sgs~D-g~v~lwd~~~~~~~~~~~~-h-~~~v~~l~~~~~~~~~l~s~s~d------g~v 106 (303)
.+|..-..+..+.++|+.++.|+.+ .++.+||..+..... ... . ...-...+.. .++++++.++.+ ..+
T Consensus 72 ~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v 149 (387)
T d1k3ia3 72 TKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNG 149 (387)
T ss_dssp CSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCE
T ss_pred CCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccc-cccccccccccceeee-cCCceeeecccccccccccee
Confidence 4454444566788999999988765 579999998876432 211 1 1111233332 357788877642 357
Q ss_pred EEEcCc
Q 022074 107 KVWDRR 112 (303)
Q Consensus 107 ~lWd~~ 112 (303)
.+||..
T Consensus 150 ~~yd~~ 155 (387)
T d1k3ia3 150 EVYSPS 155 (387)
T ss_dssp EEEETT
T ss_pred eeecCC
Confidence 888865
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.38 E-value=0.5 Score=37.87 Aligned_cols=191 Identities=11% Similarity=-0.004 Sum_probs=103.6
Q ss_pred EEEcCCCC-EEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 45 LKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 45 l~~s~~g~-~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
..|.+..+ ...+--..+.|.-||.++++.. .......+.++++.+ ++.+++ ++.+ .+.++|...... +....
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~--~~~~~~~~~~i~~~~-dg~l~v-a~~~-gl~~~d~~tg~~--~~l~~ 95 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKT--VHALPFMGSALAKIS-DSKQLI-ASDD-GLFLRDTATGVL--TLHAE 95 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEECSSCEEEEEEEE-TTEEEE-EETT-EEEEEETTTCCE--EEEEC
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEE--EEECCCCcEEEEEec-CCCEEE-EEeC-ccEEeeccccee--eEEee
Confidence 34776444 4444446788999999988643 333445678888854 465655 4444 577788642211 11111
Q ss_pred eccc--ccCeEEEEeCCCCCEEEEEeCC----CcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccCCCCCcc
Q 022074 124 LMGH--LEGITFIDSRGDGRYLISNGKD----QAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKHPCDQSV 197 (303)
Q Consensus 124 ~~~h--~~~v~~~~~~~~~~~l~s~~~D----~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (303)
.... ....+.+.+.++|++.++...+ +.-.+|.+... .+
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g-----------------------------------~~ 140 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-----------------------------------KV 140 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-----------------------------------EE
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC-----------------------------------cE
Confidence 1111 1235667778888766554321 11122221100 00
Q ss_pred eEEecccceeeeEEEeeeeeeeCCCeE-EEEEeCCCeEEEEECCCC------eE--EEEeecCCCCeEEEEECCCCCeEE
Q 022074 198 ATYKGHSVLRTLIRCHFSPVYSTGQKY-IYTGSHDSCVYVYDLVSG------EQ--VAALKYHTSPVRDCSWHPSQPMLV 268 (303)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~s~~~~~-latg~~dg~i~iwd~~~~------~~--~~~~~~h~~~I~~v~~sp~~~~la 268 (303)
.... .-+.+.....++++++. +++.+..+.|+.+++... +. ...+..-......+++..+|++.+
T Consensus 141 ~~~~------~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 141 TKLF------ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN 214 (295)
T ss_dssp EEEE------EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred EEEe------eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence 0000 00111122346777764 455667889999987421 11 122223345678899999999877
Q ss_pred EEeCCCCEEEeecCC
Q 022074 269 SSSWDGDVVRWEFPG 283 (303)
Q Consensus 269 s~s~Dg~i~~Wd~~~ 283 (303)
+.-..+.|..||..+
T Consensus 215 a~~~~g~V~~~dp~G 229 (295)
T d2ghsa1 215 ARWGEGAVDRYDTDG 229 (295)
T ss_dssp EEETTTEEEEECTTC
T ss_pred eeeCCCceEEecCCC
Confidence 776778899998654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.14 E-value=0.6 Score=37.38 Aligned_cols=191 Identities=16% Similarity=0.146 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEec-cc---CCeEEEEEccCCCcEEEEecC----CCeEEEEcCc
Q 022074 41 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HT---SDVNTVCFGDESGHLIYSGSD----DNLCKVWDRR 112 (303)
Q Consensus 41 ~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~-h~---~~v~~l~~~~~~~~~l~s~s~----dg~v~lWd~~ 112 (303)
.+.++.+.++|..++ ++.+| +.++|..+++....... .. ..++.+... +++++.++... .+.-.+|.+.
T Consensus 60 ~~~~i~~~~dg~l~v-a~~~g-l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd-~~G~iw~~~~~~~~~~~~g~l~~~~ 136 (295)
T d2ghsa1 60 MGSALAKISDSKQLI-ASDDG-LFLRDTATGVLTLHAELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA 136 (295)
T ss_dssp CEEEEEEEETTEEEE-EETTE-EEEEETTTCCEEEEECSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred CcEEEEEecCCCEEE-EEeCc-cEEeecccceeeEEeeeecCCCcccceeeEEC-CCCCEEEEeccccccccceeEeeec
Confidence 477888888886555 45665 88999999875432221 11 245677764 45666655421 1223344332
Q ss_pred cccCCCccceeecccccCeEEEEeCCCCCEE-EEEeCCCcEEEEEcccccCCcccccCccceeeeceeeeCCCCCccccC
Q 022074 113 CLNVKGKPAGVLMGHLEGITFIDSRGDGRYL-ISNGKDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYPPQARDLKH 191 (303)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (303)
.+...... .....-+.+.++++++.+ ++.+..+.|..+++......... .+.. + ...+
T Consensus 137 ----~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~---~~~~-~----~~~~-------- 195 (295)
T d2ghsa1 137 ----KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---KAEV-F----IDST-------- 195 (295)
T ss_dssp ----TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---CCEE-E----EECT--------
T ss_pred ----CCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc---ceEE-E----eccC--------
Confidence 12222222 222334567788888754 56667788888876432110000 0000 0 0000
Q ss_pred CCCCcceEEecccceeeeEEEeeeeeeeCCCeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEC-CCCC-eEEE
Q 022074 192 PCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWH-PSQP-MLVS 269 (303)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~s-p~~~-~las 269 (303)
. .....+ ...+..+|.+.++.-..+.|..||. .|+.+..+......+++++|= ||.+ +++|
T Consensus 196 --~-~~g~pd-------------G~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 196 --G-IKGGMD-------------GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp --T-SSSEEE-------------EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred --c-cccccc-------------ceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 0 000000 0113456777777777889999996 588888887766779999995 5655 4555
Q ss_pred EeC
Q 022074 270 SSW 272 (303)
Q Consensus 270 ~s~ 272 (303)
...
T Consensus 259 ta~ 261 (295)
T d2ghsa1 259 SAR 261 (295)
T ss_dssp EBC
T ss_pred ECC
Confidence 443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.26 E-value=0.072 Score=41.81 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=37.4
Q ss_pred eCC--CeEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEECCCCCeEEEE
Q 022074 219 STG--QKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSS 270 (303)
Q Consensus 219 s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~h~~~I~~v~~sp~~~~las~ 270 (303)
||+ |+.+|-. .+|.|++.|+..++. ..+..+...+...+|||||+.||-.
T Consensus 7 sPdi~G~~v~f~-~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~ 58 (281)
T d1k32a2 7 NPDIHGDRIIFV-CCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIR 58 (281)
T ss_dssp EEEEETTEEEEE-ETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEE
T ss_pred CCCCCCCEEEEE-eCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEE
Confidence 455 6666654 356799999998875 4555677788999999999987744
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.99 E-value=2.5 Score=34.22 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCEEEEeeCCC-----------eEEEEECCCCceEE---EEecccCCeEEEEEccCCCcEEEEecCC-CeE
Q 022074 42 IFSLKFSTDGRELVAGSSDD-----------CIYVYDLEANKLSL---RILAHTSDVNTVCFGDESGHLIYSGSDD-NLC 106 (303)
Q Consensus 42 v~~l~~s~~g~~l~sgs~Dg-----------~v~lwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~s~d-g~v 106 (303)
+.......+|+.++.|+.+. .+.+||..+++... ....|.......++. .++.+++.|+.+ .++
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKT 100 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEe-cCCcEEEeecCCCcce
Confidence 44444556888888888532 37899999886432 112333334455564 457888888654 589
Q ss_pred EEEcCccccCCCccceeecccccCeEEEEeCCCCCEEEEEeCC------CcEEEEEccc
Q 022074 107 KVWDRRCLNVKGKPAGVLMGHLEGITFIDSRGDGRYLISNGKD------QAIKLWDIRK 159 (303)
Q Consensus 107 ~lWd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~D------~~v~lWdl~~ 159 (303)
.+||..... .......... ..-.......++..++.++.+ ..+.+||...
T Consensus 101 ~~yd~~~~~--w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 101 SLYDSSSDS--WIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp EEEEGGGTE--EEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred eEecCccCc--cccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 999975221 1111111111 112234456788888888753 3577888754
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.30 E-value=2.9 Score=33.52 Aligned_cols=221 Identities=12% Similarity=0.184 Sum_probs=113.6
Q ss_pred EEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEEEEcCccccCCCcccee
Q 022074 44 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVWDRRCLNVKGKPAGV 123 (303)
Q Consensus 44 ~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~lWd~~~~~~~~~~~~~ 123 (303)
+.-.+|..+.|+.=+ ..++.+||+++.+..+... ....|.-=.|-. .+.|+-.. +..|+-|+++. ...|...
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~-~~e~VvfWkWis--~~~L~lVT-~taVYHW~~~g---~s~P~k~ 138 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWIS--LNTVALVT-DNAVYHWSMEG---ESQPVKM 138 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-CSSCCCEEEESS--SSEEEEEC-SSEEEEEESSS---SCCCEEE
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE-cCCCcEEEEecC--CCEEEEEc-CCceEEEcccC---CCCchhh
Confidence 355788888887765 4589999999987654333 335676667753 33444333 34899999853 2346666
Q ss_pred eccccc----CeEEEEeCCCCCEEEEEe-------CCCcEEEEEcccccCCcccccCccceeeeceeeeCC--CCC-ccc
Q 022074 124 LMGHLE----GITFIDSRGDGRYLISNG-------KDQAIKLWDIRKMSSNASCNLGFRSYEWDYRWMDYP--PQA-RDL 189 (303)
Q Consensus 124 ~~~h~~----~v~~~~~~~~~~~l~s~~-------~D~~v~lWdl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~ 189 (303)
+..|.. .|..-..+++.+.++-.| -.|.+.||...+... ..++...-.|. ....+ +.. ..+
T Consensus 139 fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s---Q~ieGhaa~F~--~~~~~g~~~~~~lf 213 (327)
T d1utca2 139 FDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS---QPIEGHAASFA--QFKMEGNAEESTLF 213 (327)
T ss_dssp EECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE---EEECCSEEEEE--EECCTTCSSCEEEE
T ss_pred hhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC---ccccceeeeeE--EEEcCCCCCCceEE
Confidence 666643 344555667777665322 136677776654211 00000000000 00000 000 000
Q ss_pred cC----CCCCcce--EE----ec-ccceeeeEEEeeee----------eeeCCCeEEEEEeCCCeEEEEECCCCeEEEEe
Q 022074 190 KH----PCDQSVA--TY----KG-HSVLRTLIRCHFSP----------VYSTGQKYIYTGSHDSCVYVYDLVSGEQVAAL 248 (303)
Q Consensus 190 ~~----~~~~~~~--~~----~~-~~~~~~~~~~~~~~----------~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 248 (303)
.. ....++. .. .+ ..+..+.....+.| ..|.....+..-..-|.|++||++++..+..-
T Consensus 214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n 293 (327)
T d1utca2 214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 293 (327)
T ss_dssp EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence 00 0000000 00 00 00111111222221 13444556777788999999999999998776
Q ss_pred ecCCCCeEEEEECCCCCeEEEEeCCCCEE
Q 022074 249 KYHTSPVRDCSWHPSQPMLVSSSWDGDVV 277 (303)
Q Consensus 249 ~~h~~~I~~v~~sp~~~~las~s~Dg~i~ 277 (303)
+-..++|...+-+....-+++...+|.+.
T Consensus 294 RIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 294 RISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred ecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 66667777555555544455555555543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.90 E-value=5.5 Score=31.85 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=46.2
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCeEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecCCCeEE
Q 022074 38 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCK 107 (303)
Q Consensus 38 ~~~~v~~l~~s~~g~~l~sgs~Dg~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~dg~v~ 107 (303)
-.+|| ++..|+.-..++.-+.-|.+.+||+.++.....-.=-.+.|..-+-. .+..-+++...+|.|.
T Consensus 255 ~DFPv-amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~-~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 255 NDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH-EATAGIIGVNRKGQVL 322 (327)
T ss_dssp TCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSEEE
T ss_pred CCcEE-EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccC-CCCceEEEECCCCeEE
Confidence 35665 67788777788888999999999999998765443344555544442 2334555666677664
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.82 E-value=9.4 Score=31.59 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=64.2
Q ss_pred CcccceEEEEEcCCCCEEEEe-eCCC----eEEEEECCCCceEEEEecccCCeEEEEEccCCCcEEEEecC---------
Q 022074 37 GYSFGIFSLKFSTDGRELVAG-SSDD----CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--------- 102 (303)
Q Consensus 37 ~~~~~v~~l~~s~~g~~l~sg-s~Dg----~v~lwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~s~--------- 102 (303)
++...+...++|||+++++.+ +.+| +++++|+.+++........ .....++|.++ ++.|+-...
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D-~~~~~Y~~~~~~~~~~~~ 199 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHD-GKGMFYNAYPQQDGKSDG 199 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTT-SSEEEEEECCCCSSCCSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCC-CCEEEEEEeccccCcccc
Confidence 556667778899999987754 3333 6899999999865422221 11246778654 444443221
Q ss_pred -------CCeEEEEcCccccCCCccceeeccccc--CeEEEEeCCCCCEEEEEe---CCCcEEEEE
Q 022074 103 -------DNLCKVWDRRCLNVKGKPAGVLMGHLE--GITFIDSRGDGRYLISNG---KDQAIKLWD 156 (303)
Q Consensus 103 -------dg~v~lWd~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~---~D~~v~lWd 156 (303)
...|.++.+... .......+....+ -+..+..+.++.+++... .+....+|-
T Consensus 200 ~~~~~~~~~~v~~h~lgt~--~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTD--QSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp SCCCCCCCCEEEEEETTSC--GGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred cccccCCcceEEEEECCCC--ccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence 124666665321 1111223322222 355666788888875322 344455553
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.63 E-value=14 Score=31.98 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=35.4
Q ss_pred eCCCeEEEEEeCCCeEEEEECCCCeEEEEeec----CCCCeEEEEECCCCC-eEEEE
Q 022074 219 STGQKYIYTGSHDSCVYVYDLVSGEQVAALKY----HTSPVRDCSWHPSQP-MLVSS 270 (303)
Q Consensus 219 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~----h~~~I~~v~~sp~~~-~las~ 270 (303)
+..+.++.+|+.||.++-+|.++|+++=+++. +..| +.|..+|+ +++..
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEE
Confidence 34566777899999999999999999877653 2234 46677886 44433
|