Citrus Sinensis ID: 022083

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccHHHHHHHHHHccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccEEEEccccccccccHHHHccHEEEEccccccccccEEEEEEEcccccHHHHcHccccEEcccccccccccccccHcccccccHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgplainhcstityrasnrhplcpdsasMRAKFIglhnagksHNVLKFRMRTFASKKSVKKLKRDRQLRLAEkgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnvLQACTVTCGLITALGVIIRQgshvasleglpfldgstevtFDFELWHLELITGLVVLVSSCRYLLLKtwpdfaksSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGallplfgmdWRSVLAVATVFGAlhlgsgrkySFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Flexible Loop (DISEMBL)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRmrtfaskksvkklkrdrqlrlaekgngvadrsgteddyvkdeskestddnftsqtlvtipsrsnVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGilwsytskssk
Low Complexity Region (SEG)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Disordered region (IsUnstruct)
*****INHCSTITYRASN***LC*****MRAKFIGLHNAGKSHNVLKFRMRT***************************************************TLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSY******
Disordered Region (DISOPRED)
**PL**NHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKF*************************************************************SRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILW*YTS****
Disordered Region (DISEMBL)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASK**********QLRLAEK***************************TSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Disordered Region (DISPRO)
*GPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKK************************************************VTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPLAINHCSTITYRASNRHPLCPDSASMRAKFIGLHNAGKSHNVLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
P37513	299	Uncharacterized protein Y	yes	no	0.240	0.244	0.397	0.0002

>sp|P37513|YYAK_BACSU Uncharacterized protein YyaK OS=Bacillus subtilis (strain 168) GN=yyaK PE=4 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 10/83 (12%)

Query: 216 SEELLFRGALLPLFGMDWRS----VLAVATVFGALHLGSGRKYSFAVWA-----TFVGFA 266
           +EEL FRG LL  FG   ++     L V  +FG LH  +    + AVWA     TF GF 
Sbjct: 159 AEELFFRGFLLQAFGRLTKNPLFLTLIVGGLFGVLHFANPEMNNGAVWAGIEYLTF-GFV 217

Query: 267 YGYATIVSKSIVVPMASHALNNL 289
           + Y TI + SI + + +HA NN+
Sbjct: 218 WTYYTIKTGSIEISLGAHAANNM 240

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
225425936	314	PREDICTED: uncharacterized protein LOC10	0.930	0.898	0.643	1e-104
297738318	350	unnamed protein product [Vitis vinifera]	0.930	0.805	0.643	1e-103
224100093	260	predicted protein [Populus trichocarpa]	0.831	0.969	0.683	2e-95
255547934	290	prenyl-dependent CAAX protease, putative	0.831	0.868	0.666	7e-94
449450604	304	PREDICTED: uncharacterized protein LOC10	0.953	0.950	0.587	1e-88
363808170	259	uncharacterized protein LOC100796629 [Gl	0.726	0.849	0.627	6e-86
297814844	293	CAAX amino terminal protease family prot	0.828	0.856	0.588	1e-82
357519485	276	hypothetical protein MTR_8g089550 [Medic	0.722	0.793	0.662	1e-82
145332689	322	CAAX amino terminal protease family prot	0.825	0.776	0.600	1e-82
18404792	293	CAAX amino terminal protease family prot	0.825	0.853	0.596	2e-82

>gi|225425936|ref|XP_002273043.1| PREDICTED: uncharacterized protein LOC100252714 [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/297 (64%), Positives = 223/297 (75%), Gaps = 15/297 (5%)

Query: 20  HPLCPDSASMRAKFIGLHNAGKSHNVLKF-----RMRTFASKKSVKKLKRDRQLR----- 69
           H   P SA M  K IGLH+  K      F     ++R FAS+ SVKKL++DRQ R     
Sbjct: 16  HSPWPISAFMGRKLIGLHDKQKILPTKFFCGLGGKIRAFASRNSVKKLRKDRQARKNLTL 75

Query: 70  -----LAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGL 124
                   + NG+ DR  +EDD V D  K S  DN  +Q  +TIPSR  VLQACTVT GL
Sbjct: 76  QTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDNLAAQGSITIPSRGAVLQACTVTSGL 135

Query: 125 ITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWP 184
           I ALG+IIRQ SH AS+EGLP LD S EV+F FE+WHLELI GLV++VSSCR+LLLKTWP
Sbjct: 136 IAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEMWHLELIAGLVIMVSSCRFLLLKTWP 195

Query: 185 DFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFG 244
           DFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGALLPLFG++W+SV  VA +FG
Sbjct: 196 DFAESSEAANQQVLSSLQPLDYMVVAFLPGISEELLFRGALLPLFGVNWKSVFVVAAIFG 255

Query: 245 ALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKS 301
            LHLG GRKYSFA+WATFVG  YGYATI S +++VPMASHA+NNL+GGI W YTSKS
Sbjct: 256 VLHLGGGRKYSFAIWATFVGVLYGYATIASSNLIVPMASHAINNLIGGISWRYTSKS 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738318|emb|CBI27519.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/297 (64%), Positives = 223/297 (75%), Gaps = 15/297 (5%)

Query: 20  HPLCPDSASMRAKFIGLHNAGKSHNVLKF-----RMRTFASKKSVKKLKRDRQLR----- 69
           H   P SA M  K IGLH+  K      F     ++R FAS+ SVKKL++DRQ R     
Sbjct: 52  HSPWPISAFMGRKLIGLHDKQKILPTKFFCGLGGKIRAFASRNSVKKLRKDRQARKNLTL 111

Query: 70  -----LAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGL 124
                   + NG+ DR  +EDD V D  K S  DN  +Q  +TIPSR  VLQACTVT GL
Sbjct: 112 QTNKIAPNEDNGLEDRFPSEDDSVPDNKKVSPIDNLAAQGSITIPSRGAVLQACTVTSGL 171

Query: 125 ITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWP 184
           I ALG+IIRQ SH AS+EGLP LD S EV+F FE+WHLELI GLV++VSSCR+LLLKTWP
Sbjct: 172 IAALGIIIRQVSHTASIEGLPILDCSMEVSFGFEMWHLELIAGLVIMVSSCRFLLLKTWP 231

Query: 185 DFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFG 244
           DFA+SSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGALLPLFG++W+SV  VA +FG
Sbjct: 232 DFAESSEAANQQVLSSLQPLDYMVVAFLPGISEELLFRGALLPLFGVNWKSVFVVAAIFG 291

Query: 245 ALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKS 301
            LHLG GRKYSFA+WATFVG  YGYATI S +++VPMASHA+NNL+GGI W YTSKS
Sbjct: 292 VLHLGGGRKYSFAIWATFVGVLYGYATIASSNLIVPMASHAINNLIGGISWRYTSKS 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100093|ref|XP_002311741.1| predicted protein [Populus trichocarpa] gi|222851561|gb|EEE89108.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/265 (68%), Positives = 209/265 (78%), Gaps = 13/265 (4%)

Query: 47  KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRS---GTEDDYVKDESKESTDDNFT-- 101
           KFR RTFA +KSVKK  RD +       NG+A  S   G E++ V    K S +DN    
Sbjct: 1   KFRTRTFARRKSVKKWTRDER-----SQNGIALESTEKGLEEERVVLSDKSSLEDNSVEP 55

Query: 102 -SQTLVTIPSRSNVLQACTVTCGLITALGVI--IRQGSHVASLEGLPFLDGSTEVTFDFE 158
              TL  I SRS+VLQACTVT GLI AL +   +   SHVAS+EGLP LD STEV+F  E
Sbjct: 56  VQSTLNNIASRSDVLQACTVTSGLIAALELFSFVDLVSHVASMEGLPILDCSTEVSFGIE 115

Query: 159 LWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEE 218
           +WHLELITGLV+L+SSCRYLLLKTWPDFA+S+EAANQQVLTSL+PLDYLVV+FLPG++EE
Sbjct: 116 MWHLELITGLVILISSCRYLLLKTWPDFAESTEAANQQVLTSLQPLDYLVVSFLPGVTEE 175

Query: 219 LLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIV 278
           LLFRGALLPLFGMDW+SVL  AT+FG LHLG+GRKYSFA+WATFVGF YGYATIVS S+V
Sbjct: 176 LLFRGALLPLFGMDWKSVLLAATIFGVLHLGNGRKYSFAIWATFVGFVYGYATIVSSSLV 235

Query: 279 VPMASHALNNLVGGILWSYTSKSSK 303
           VPMASHALNNL GG+LW +TSK +K
Sbjct: 236 VPMASHALNNLAGGLLWRHTSKPAK 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547934|ref|XP_002515024.1| prenyl-dependent CAAX protease, putative [Ricinus communis] gi|223546075|gb|EEF47578.1| prenyl-dependent CAAX protease, putative [Ricinus communis]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 174/261 (66%), Positives = 207/261 (79%), Gaps = 9/261 (3%)

Query: 47  KFRMRTFASKK-SVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDD---NFTS 102
           +F  + FA ++   KKL+R+ QL      NG+A ++ T+  + +++   S +D   N   
Sbjct: 32  RFCTKAFARQQIPKKKLRRNGQLE-----NGIALKTTTDKSFTENDDGSSLEDSTVNNIM 86

Query: 103 QTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + L++IPSR  VLQACTVT GLI ALG++IRQ SHVAS+EGLP LD S+EV+F  E WH 
Sbjct: 87  EKLISIPSRRAVLQACTVTSGLIAALGILIRQVSHVASVEGLPILDCSSEVSFGTETWHF 146

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
           EL+ GLVVL+SS RYLLL TWPDFA+S+EAANQQVLTSL+PLDY+VV+FLPGISEELLFR
Sbjct: 147 ELVIGLVVLISSSRYLLLMTWPDFAESTEAANQQVLTSLQPLDYIVVSFLPGISEELLFR 206

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMA 282
           GALLPLFGMDW+S LAVA VFG LHLGSGRKYSFA+WATFVG AYGYATI S SI+VPM 
Sbjct: 207 GALLPLFGMDWKSALAVAAVFGVLHLGSGRKYSFAIWATFVGLAYGYATIASSSIIVPMV 266

Query: 283 SHALNNLVGGILWSYTSKSSK 303
           SHALNNLVGGILW  TSK SK
Sbjct: 267 SHALNNLVGGILWRSTSKLSK 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450604|ref|XP_004143052.1| PREDICTED: uncharacterized protein LOC101207590 [Cucumis sativus]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/310 (58%), Positives = 221/310 (71%), Gaps = 21/310 (6%)

Query: 1   MGPLAINHCSTITYRASNRHPLC-PDSASMRAKFIGLHN------AGKS--HNVLKFRMR 51
           M  LAIN+  T T   S  +     +S  M  K IGL N      AG S   NV   + +
Sbjct: 1   MNLLAINYRCTSTDAGSTFNLFTWRNSIFMGRKGIGLCNLRRVLPAGLSCRSNV---KTK 57

Query: 52  TFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLVTIPSR 111
             A +KS ++L+R+R+         V+  S + DD  + E K ++ D+     L+ I SR
Sbjct: 58  VCAKRKSARRLERNRE--------EVSITSSSADDNAQ-EVKMNSSDSSPKNYLINISSR 108

Query: 112 SNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELITGLVVL 171
           S+VLQAC +T GLI ALGVIIRQ SHVAS+EGLP +D ++EV+F FE+W L+LI GLVVL
Sbjct: 109 SSVLQACIITSGLIAALGVIIRQVSHVASIEGLPVIDCTSEVSFSFEVWQLQLIIGLVVL 168

Query: 172 VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGM 231
           +SS R+ LLKTWPDFA+SSEAAN+QVLTSL+PLDY VVAFLPGISEELLFRGAL+PL G 
Sbjct: 169 ISSSRFFLLKTWPDFAESSEAANRQVLTSLQPLDYAVVAFLPGISEELLFRGALIPLLGF 228

Query: 232 DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHALNNLVG 291
           +W SV+  A +FG LHLG GRKYSFA+WATFVG AYGYATI S SIVVPMASHALNNLVG
Sbjct: 229 NWASVVVTAAIFGILHLGGGRKYSFAIWATFVGLAYGYATIESSSIVVPMASHALNNLVG 288

Query: 292 GILWSYTSKS 301
           GILW+Y S+S
Sbjct: 289 GILWTYESRS 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808170|ref|NP_001242738.1| uncharacterized protein LOC100796629 [Glycine max] gi|255639117|gb|ACU19858.1| unknown [Glycine max]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 160/255 (62%), Positives = 192/255 (75%), Gaps = 35/255 (13%)

Query: 47  KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLV 106
           ++ + +FA KKS+KK +RD                      V + + +  DD        
Sbjct: 33  RYSICSFA-KKSLKKSRRD----------------------VTEAAGDLLDD-------- 61

Query: 107 TIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLELIT 166
               +S VLQAC +TCGLI ALG++IRQ SHVAS+EGLP  D STEV+F FE+WHLELIT
Sbjct: 62  ----KSAVLQACIITCGLIAALGIVIRQVSHVASVEGLPVFDCSTEVSFGFEMWHLELIT 117

Query: 167 GLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRGALL 226
           GLVVL+SSCRYLLLKTWPDFAKSSEAANQQVL+SL+PLDY+VVAFLPGISEELLFRGA+L
Sbjct: 118 GLVVLISSCRYLLLKTWPDFAKSSEAANQQVLSSLQPLDYIVVAFLPGISEELLFRGAIL 177

Query: 227 PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMASHAL 286
           PL GM+W S+   A +FG LHLG+GRKYSFA+WATFVG AYGYATI+S S+ VPMASHA+
Sbjct: 178 PLLGMNWNSIGIAALIFGVLHLGNGRKYSFAIWATFVGLAYGYATILSSSVAVPMASHAV 237

Query: 287 NNLVGGILWSYTSKS 301
           NNL+GG+LW YTS +
Sbjct: 238 NNLIGGLLWRYTSNT 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814844|ref|XP_002875305.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297321143|gb|EFH51564.1| CAAX amino terminal protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 194/260 (74%), Gaps = 9/260 (3%)

Query: 45  VLKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQ- 103
           +++F +R  +S+KS+KKL+R+ Q     +G  +  R+ TE++      +E+  D  TS+ 
Sbjct: 34  LVQFDVRASSSRKSLKKLRRESQ-----QGKDITTRNVTEEEVSSPRFEEAQVDTLTSKD 88

Query: 104 ---TLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELW 160
               +V    R  VLQACTVT GL+ ALG+IIR+ SHVAS EGLP  D S  V F FE W
Sbjct: 89  STGAVVVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLPVPDCSIVVPFGFETW 148

Query: 161 HLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELL 220
           HL LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEE+L
Sbjct: 149 HLGLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEEML 208

Query: 221 FRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVP 280
           FRGAL+PL G +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VP
Sbjct: 209 FRGALMPLLGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIIYGYAAVLSSSLLVP 268

Query: 281 MASHALNNLVGGILWSYTSK 300
           MASHALNNLVGG+LW ++SK
Sbjct: 269 MASHALNNLVGGLLWRHSSK 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519485|ref|XP_003630031.1| hypothetical protein MTR_8g089550 [Medicago truncatula] gi|355524053|gb|AET04507.1| hypothetical protein MTR_8g089550 [Medicago truncatula]

 Score =  312 bits (800), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 145/219 (66%), Positives = 180/219 (82%)

Query: 83  TEDDYVKDESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVASLE 142
           ++D +V++++   T  N   +    IPSRS VLQAC +T  LI A G +IRQ SHVAS+E
Sbjct: 55  SDDKFVQNDNLLDTSLNPPVENANPIPSRSAVLQACILTSALIAAFGTVIRQVSHVASIE 114

Query: 143 GLPFLDGSTEVTFDFELWHLELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLE 202
           GLP LD STEV+F FE+WHLELITG+VVL+SS RYLLLKTWPDFA+SS+AAN+QVL+SL+
Sbjct: 115 GLPVLDCSTEVSFGFEMWHLELITGIVVLISSSRYLLLKTWPDFAESSKAANRQVLSSLQ 174

Query: 203 PLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATF 262
           PLDY+ VA LPGISEELLFRGA+LPL GM+W S+   A +FG LH+G+GR YSFA+WATF
Sbjct: 175 PLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATF 234

Query: 263 VGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKS 301
           VG AYGYAT++S S+ VPMASHA+NNL+GG+LW YTSK+
Sbjct: 235 VGLAYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKA 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332689|ref|NP_001078210.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|332643593|gb|AEE77114.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 194/258 (75%), Gaps = 8/258 (3%)

Query: 46  LKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTL 105
            KF +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  
Sbjct: 65  FKFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDS 119

Query: 106 VTI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL
Sbjct: 120 IDVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHL 179

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
            LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFR
Sbjct: 180 GLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFR 239

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMA 282
           GAL+PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMA
Sbjct: 240 GALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMA 299

Query: 283 SHALNNLVGGILWSYTSK 300
           SHALNNLVGG+LW Y+SK
Sbjct: 300 SHALNNLVGGLLWRYSSK 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404792|ref|NP_566788.1| CAAX amino terminal protease family protein [Arabidopsis thaliana] gi|18377767|gb|AAL67033.1| unknown protein [Arabidopsis thaliana] gi|20259159|gb|AAM14295.1| unknown protein [Arabidopsis thaliana] gi|332643592|gb|AEE77113.1| CAAX amino terminal protease family protein [Arabidopsis thaliana]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/258 (59%), Positives = 195/258 (75%), Gaps = 8/258 (3%)

Query: 46  LKFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTL 105
           ++F +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  
Sbjct: 36  VQFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDS 90

Query: 106 VTI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHL 162
           + +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL
Sbjct: 91  IDVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHL 150

Query: 163 ELITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFR 222
            LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFR
Sbjct: 151 GLIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFR 210

Query: 223 GALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMA 282
           GAL+PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMA
Sbjct: 211 GALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMA 270

Query: 283 SHALNNLVGGILWSYTSK 300
           SHALNNLVGG+LW Y+SK
Sbjct: 271 SHALNNLVGGLLWRYSSK 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:505006379	322	AT3G26085 "AT3G26085" [Arabido	0.821	0.773	0.603	1e-77
UNIPROTKB|Q81SY7	187	BAS1395 "CAAX amino terminal p	0.435	0.705	0.265	2.3e-07
TIGR_CMR|BA_1506	187	BA_1506 "CAAX amino terminal p	0.435	0.705	0.265	2.3e-07

TAIR|locus:505006379 AT3G26085 "AT3G26085" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 155/257 (60%), Positives = 194/257 (75%)

Query:    47 KFRMRTFASKKSVKKLKRDRQLRLAEKGNGVADRSGTEDDYVKDESKESTDDNFTSQTLV 106
             KF +R  +S+KS+KKLKR+ Q     +G  +  R+ T+++      +E+  D+ TS+  +
Sbjct:    66 KFDVRASSSRKSLKKLKRESQ-----QGKDIGLRNVTDEEVSSPRFEEAQVDSSTSKDSI 120

Query:   107 TI---PSRSNVLQACTVTCGLITALGVIIRQGSHVASLEGLPFLDGSTEVTFDFELWHLE 163
              +     R  VLQACTVT GL+ ALG+IIR+ SHVAS EGL   D S +V F FE WHL 
Sbjct:   121 DVFVAAPRDKVLQACTVTSGLMAALGLIIRKASHVASTEGLLVPDCSIDVPFGFETWHLG 180

Query:   164 LITGLVVLVSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVAFLPGISEELLFRG 223
             LI G+VV +SS R+LLLK+WPDFA SSEAAN+Q+LTSLEPLDYLVVA LPGISEELLFRG
Sbjct:   181 LIAGIVVFISSSRFLLLKSWPDFADSSEAANRQILTSLEPLDYLVVAMLPGISEELLFRG 240

Query:   224 ALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVVPMAS 283
             AL+PLFG +W  ++AV  +FG LHLGSGRKYSFAVWA+ VG  YGYA ++S S++VPMAS
Sbjct:   241 ALMPLFGTNWNGIVAVGLIFGLLHLGSGRKYSFAVWASIVGIVYGYAAVLSSSLIVPMAS 300

Query:   284 HALNNLVGGILWSYTSK 300
             HALNNLVGG+LW Y+SK
Sbjct:   301 HALNNLVGGLLWRYSSK 317

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q81SY7 BAS1395 "CAAX amino terminal protease family protein" [Bacillus anthracis (taxid:1392)]

 Score = 132 (51.5 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/143 (26%), Positives = 69/143 (48%)

Query:   157 FELWHLE-----LITGLVVL-VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVA 210
             F LW  E     +I GL+ + +    Y+ ++ +P+        N ++   +  L  LV+ 
Sbjct:    46 FNLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVIT 105

Query:   211 FLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYA 270
             FL G +EE LFRG +   FG+    V+A + VF  LH+    K     +  F+ F +GY 
Sbjct:   106 FLIGFAEEFLFRGVVQTHFGI----VIA-SFVFAVLHIRYITKPFLFCFVCFISFVFGYV 160

Query:   271 TIVSKSIVVPMASHALNNLVGGI 293
                + ++ + + +H L + + G+
Sbjct:   161 FEWTGNLFITIFAHFLVDFIMGL 183

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1506 BA_1506 "CAAX amino terminal protease family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 132 (51.5 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 38/143 (26%), Positives = 69/143 (48%)

Query:   157 FELWHLE-----LITGLVVL-VSSCRYLLLKTWPDFAKSSEAANQQVLTSLEPLDYLVVA 210
             F LW  E     +I GL+ + +    Y+ ++ +P+        N ++   +  L  LV+ 
Sbjct:    46 FNLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVIT 105

Query:   211 FLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYA 270
             FL G +EE LFRG +   FG+    V+A + VF  LH+    K     +  F+ F +GY 
Sbjct:   106 FLIGFAEEFLFRGVVQTHFGI----VIA-SFVFAVLHIRYITKPFLFCFVCFISFVFGYV 160

Query:   271 TIVSKSIVVPMASHALNNLVGGI 293
                + ++ + + +H L + + G+
Sbjct:   161 FEWTGNLFITIFAHFLVDFIMGL 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      303       303   0.00097  115 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.41u 0.13s 23.54t   Elapsed:  00:00:01
  Total cpu time:  23.41u 0.13s 23.54t   Elapsed:  00:00:01
  Start:  Sat May 11 04:54:38 2013   End:  Sat May 11 04:54:39 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035125001 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (256 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam02517	93	pfam02517, Abi, CAAX protease self-immunity	8e-17
COG1266	226	COG1266, COG1266, Predicted metal-dependent membra	5e-14
TIGR03008	222	TIGR03008, pepcterm_CAAX, CAAX prenyl protease-rel	0.001

>gnl|CDD|217080 pfam02517, Abi, CAAX protease self-immunity

 Score = 73.7 bits (182), Expect = 8e-17
 Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 199 TSLEPLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYS 255
             L  L  L++A L  I EELLFRG LLP          ++L  + +FG LHL +G    
Sbjct: 1   PLLLLLLLLLLALLAPIGEELLFRGFLLPRLRKRFWPLLAILISSLLFGLLHLPNG--PL 58

Query: 256 FAVWATFVGFAYGYATIVSKSIVVPMASHALNNLV 290
             + A  +G   G+  + + S+   +  HALNNL+
Sbjct: 59  AFLSAFLLGLVLGWLYLRTGSLWAAILLHALNNLL 93

Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity. Length = 93

>gnl|CDD|224185 COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 206 YLVVAFLPGISEELLFRGALLPLFGMDWRSVLAV---ATVFGALHLGSGRKYSFAVWATF 262
           +LV+  L  ++EELLFRG LL      +  +LA+   + +F  LHL +G    + +    
Sbjct: 126 FLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFI 185

Query: 263 VGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSS 302
            G   G   + + S+ VP+  HAL NL+  +  S     +
Sbjct: 186 AGLILGLLYLRTGSLWVPILLHALINLLALLFLSLLLLLA 225

Length = 226

>gnl|CDD|163100 TIGR03008, pepcterm_CAAX, CAAX prenyl protease-related protein

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 215 ISEELLFRGALL-----------PLFGMDWRSVLAVATVFGALHLGSGRKYSFAVWATFV 263
           + EEL +R  LL           P     W S LAV  +FG  H          V     
Sbjct: 129 VMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEH-------HLIVAGLIA 181

Query: 264 GFAYGYATIVSKSIVVPMASHALNNLVGGI 293
           G AY    + + SI+  + +HA+ N + G+
Sbjct: 182 GLAYNLLLLRTGSIMACILAHAVTNGLLGL 211

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
TIGR03008	222	pepcterm_CAAX CAAX prenyl protease-related protein	99.72
PF02517	91	Abi: CAAX protease self-immunity; InterPro: IPR003	99.7
COG1266	226	Predicted metal-dependent membrane protease [Gener	99.64
KOG4130	291	consensus Prenyl protein protease [Posttranslation	98.66
COG4449	827	Predicted protease of the Abi (CAAX) family [Gener	97.43
PF10086	223	DUF2324: Putative membrane peptidase family (DUF23	85.79

>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein

Probab=99.72  E-value=4.4e-16  Score=141.97  Aligned_cols=85  Identities=29%  Similarity=0.392  Sum_probs=73.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhhh-----------HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcC
Q 022083          207 LVVAFLPGISEELLFRGALLPLFGM-----------DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSK  275 (303)
Q Consensus       207 ll~~i~~~i~EEllFRG~Ll~~l~~-----------~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~Tg  275 (303)
                      +..+++.|+.||++|||++++.+.+           .|.++++||++||+.|..       .+..++.|+++|++|.+||
T Consensus       121 ~~~~l~vpi~EElfFRG~l~~~l~~~~f~~~~~~~~~~~a~lisSllFal~H~~-------~~~~~l~Gli~~~l~~~tg  193 (222)
T TIGR03008       121 AGATLVVPVMEELFWRSFLLRYLQQSDFESVPGGRFHWPSFLAVTLLFGLEHHL-------IVAGLIAGLAYNLLLLRTG  193 (222)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhC
Confidence            4446788999999999999999853           478999999999999974       3556788999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcc
Q 022083          276 SIVVPMASHALNNLVGGILWSYT  298 (303)
Q Consensus       276 sL~~~I~~H~l~N~v~~ll~~~~  298 (303)
                      |++.+|++|+++|.+..+...++
T Consensus       194 sL~~~I~~H~~~N~ll~~~vl~~  216 (222)
T TIGR03008       194 SIMACILAHAVTNGLLGLWVLLT  216 (222)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999987765544

The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.

>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases)

Probab=99.70  E-value=1.7e-16  Score=123.50  Aligned_cols=85  Identities=31%  Similarity=0.535  Sum_probs=75.4

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 022083          203 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV  279 (303)
Q Consensus       203 ~~~lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~TgsL~~  279 (303)
                      .+..+...+.+|+.||++|||++++.+.+   ++.++++++++|++.|...  .+. ++..++.|++++++|.+|||+|+
T Consensus         4 ~~~~~~~~~~~~~~EEl~fRg~l~~~l~~~~~~~~a~~is~~~f~~~H~~~--~~~-~~~~~~~g~~~~~~~~~t~sl~~   80 (91)
T PF02517_consen    4 LIFFLVMILIAPIAEELFFRGFLFNRLRRRFNPWFAILISSLLFALWHLPN--GPQ-FIYAFLFGLLFGYLYLRTGSLWA   80 (91)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh--hHH-HHHHHHHHHHHHHHHHHcCChHH
Confidence            34556677889999999999999999876   5799999999999999985  345 78899999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 022083          280 PMASHALNNLV  290 (303)
Q Consensus       280 ~I~~H~l~N~v  290 (303)
                      ++++|+++|.+
T Consensus        81 ~i~~H~~~n~~   91 (91)
T PF02517_consen   81 AIIAHALWNLV   91 (91)
T ss_pred             HHHHHHHHHcC
Confidence            99999999973

The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane

>COG1266 Predicted metal-dependent membrane protease [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=128.70  Aligned_cols=87  Identities=32%  Similarity=0.466  Sum_probs=76.7

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 022083          203 PLDYLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVATVFGALHLGSGRKYSFAVWATFVGFAYGYATIVSKSIVV  279 (303)
Q Consensus       203 ~~~lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSsllFgl~Hl~~~~~~~~~i~~~~~Glv~g~ly~~TgsL~~  279 (303)
                      ...++...+.+|+.||++|||++++.+.+   .+.++++||++||++|..+...+..++.++.+|++++++|.||||++.
T Consensus       123 ~~~~~~~~i~~~l~EEl~fRg~l~~~l~~~~~~~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~  202 (226)
T COG1266         123 LLFFLVLLILAPLAEELLFRGYLLGALARRFGPLLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWV  202 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence            44456667888999999999999999877   578999999999999998653256788899999999999999999999


Q ss_pred             HHHHHHHHHH
Q 022083          280 PMASHALNNL  289 (303)
Q Consensus       280 ~I~~H~l~N~  289 (303)
                      ++..|+++|.
T Consensus       203 ~i~~H~~~N~  212 (226)
T COG1266         203 PILLHALINL  212 (226)
T ss_pred             HHHHHHHHHH
Confidence            9999999995

>KOG4130 consensus Prenyl protein protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.2e-06  Score=80.50  Aligned_cols=83  Identities=23%  Similarity=0.375  Sum_probs=68.8

Q ss_pred             HHhhhhHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhhcC-------cc---------hHHHHHHHHHHHHHHHH
Q 022083          210 AFLPGISEELLFRGALLPLFGM----DWRSVLAVATVFGALHLGS-------GR---------KYSFAVWATFVGFAYGY  269 (303)
Q Consensus       210 ~i~~~i~EEllFRG~Ll~~l~~----~~~ailiSsllFgl~Hl~~-------~~---------~~~~~i~~~~~Glv~g~  269 (303)
                      -+++|+.||++||..+++...+    ...++...-++||+.|...       ++         .--++.++.+.|..-+.
T Consensus       135 ~iiaPLtEElvfracmlp~~l~~~~s~l~avF~~PLfFGvAH~HHiyEqL~~g~~~~~~ilL~t~fQfsYTtlFG~yTaf  214 (291)
T KOG4130|consen  135 FIIAPLTEELVFRACMLPTYLNLIQSSLQAVFWQPLFFGVAHAHHIYEQLQEGSMTTVSILLTTCFQFSYTTLFGGYTAF  214 (291)
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhhcchhhHHHhhHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999997755    5567888999999999732       10         12257788899999999


Q ss_pred             HHHhcCCcHHHHHHHHHHHHHHH
Q 022083          270 ATIVSKSIVVPMASHALNNLVGG  292 (303)
Q Consensus       270 ly~~TgsL~~~I~~H~l~N~v~~  292 (303)
                      ++.|||++|.+|+.|+..|...+
T Consensus       215 lF~rTghl~~~iLvHAfCN~MGf  237 (291)
T KOG4130|consen  215 LFVRTGHLWCPILVHAFCNIMGF  237 (291)
T ss_pred             HhhhcCCchHHHHHHHHHhhcCC
Confidence            99999999999999999998654

>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]

Probab=97.43  E-value=0.00044  Score=69.41  Aligned_cols=82  Identities=26%  Similarity=0.333  Sum_probs=61.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhhh---HHHHHHHHH--HHHHHHhhcCcc-----------hHHHHHHHHHHHHHHHH
Q 022083          206 YLVVAFLPGISEELLFRGALLPLFGM---DWRSVLAVA--TVFGALHLGSGR-----------KYSFAVWATFVGFAYGY  269 (303)
Q Consensus       206 lll~~i~~~i~EEllFRG~Ll~~l~~---~~~ailiSs--llFgl~Hl~~~~-----------~~~~~i~~~~~Glv~g~  269 (303)
                      ++-+.+.+++.||++||..+++.=+.   +|..+....  ++|.++|.-+.-           .+.+.....++|+-++.
T Consensus       712 iL~vIl~PAl~EElvFRvvLlP~P~E~r~~W~tl~a~~~l~LfvLyHplnA~T~y~rg~PvFf~PiFL~ltglLGL~Ctv  791 (827)
T COG4449         712 ILTVILIPALGEELVFRVVLLPGPGEGRRPWVTLGAATGLVLFVLYHPLNALTFYPRGAPVFFRPIFLLLTGLLGLGCTV  791 (827)
T ss_pred             hhhheehhhccccceeEEEecCCCCccccchHhHHHHHHHHHHHHhhhhhhhhccccCCcceeccHHHHHHHHHhhhhhh
Confidence            44556788999999999999986433   665444333  489999974311           22355667789999999


Q ss_pred             HHHhcCCcHHHHHHHHHH
Q 022083          270 ATIVSKSIVVPMASHALN  287 (303)
Q Consensus       270 ly~~TgsL~~~I~~H~l~  287 (303)
                      .|..|+|+|+.+.+|.+.
T Consensus       792 ty~vT~SlW~iV~lHW~v  809 (827)
T COG4449         792 TYRVTGSLWPIVLLHWAV  809 (827)
T ss_pred             hHHhccchHHHHHHHHHH
Confidence            999999999999999754

>PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.79  E-value=20  Score=32.83  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=15.2

Q ss_pred             CcHHHHHHHHHHHHHHHHHH
Q 022083          276 SIVVPMASHALNNLVGGILW  295 (303)
Q Consensus       276 sL~~~I~~H~l~N~v~~ll~  295 (303)
                      -+..+|++|++.|..+.+..
T Consensus       190 ~l~~AIllHaliD~~aal~q  209 (223)
T PF10086_consen  190 YLVLAILLHALIDFPAALYQ  209 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999776653

However, they are predicted to be integral membrane proteins (with several transmembrane segments).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 56/234 (23%)

Query: 84  EDDYVKD----ESKESTDDNFTSQTLVTIPSRSNVLQACTVTCGLITALGVIIRQGSHVA 139
           ED +V +    + ++      + + +       +++ +     G +     ++ +   + 
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 140 SLEGLPFLDGSTEVTFDF--ELWHLELI--TGLVVLVSSCRYLLLKTWPDFAKSS----E 191
                 F++    + + F       E    + +  +    R  L      FAK +    +
Sbjct: 80  QK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 192 AANQ--QVLTSLEPLDYLVVAFLPGISEELLFRGALLPLFGMDWRSVLAVATVFGALHLG 249
              +  Q L  L P   +++  + G               G   ++ +A+      L   
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLG--------------SG---KTWVALDVC---LSYK 175

Query: 250 SGRKYSFAV-WATFVGFAYGYATIVSKSIVVPMASHALNNLVGGILWSYTSKSS 302
              K  F + W              S   V+ M    L  L+  I  ++TS+S 
Sbjct: 176 VQCKMDFKIFWLNL-----KNCN--SPETVLEM----LQKLLYQIDPNWTSRSD 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00