Citrus Sinensis ID: 022110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEcccccEEEcccccEEEEEEEEEEEEccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHEcccccccccccHHHccccccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEccccEEccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEcccccEEEccccccHHHHEEEEEEcccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MAFLRRLLTNhalnrtvgvSESAYLLgssrsyssgvsivpeiysqnissclckdhgalpwtrgstmtlrsslapksllYLNEKRfataqpkapAQARQMQGALKvsisspgfiyepyapreaipfwrrwftrdgwrrtKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFeaydskgvtvagdktkEVLVRDIWVFekslfhpgaywrlcgriki
Flexible Loop (DISEMBL)
MAFLRRLLtnhalnrtvgvsesaYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEpyapreaipfwrrwftrdgwrRTKDDIILELKSAYAIAKlrksgyskqkfYTEAVDLYKEINTlmangdktslRKAVTEKMYSALKNeikqresmwssVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQkfeaydskgvtvagdktkeVLVRDIWVfekslfhpgaywrlcgriki
Low Complexity Region (SEG)
MAFLRRLLTNHALNRTVGVSEsayllgssrsyssgvsIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered region (IsUnstruct)
***LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNE*********************KVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI**
Disordered Region (DISOPRED)
********TNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWT*********************************************ISSPGFIYEPYA****************WRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered Region (DISEMBL)
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFAT***************LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered Region (DISPRO)
*AFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNE**********PA*****QGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q9VCX3	361	Probable 39S ribosomal pr	yes	no	0.605	0.506	0.271	4e-11
Q4QQQ4	309	39S ribosomal protein L45	yes	no	0.612	0.598	0.235	4e-08
Q9D0Q7	306	39S ribosomal protein L45	yes	no	0.701	0.692	0.234	7e-08
P59480	309	39S ribosomal protein L45	N/A	no	0.612	0.598	0.235	9e-08
Q3T142	306	39S ribosomal protein L45	yes	no	0.708	0.699	0.218	2e-06
Q95Y71	357	Probable 39S ribosomal pr	yes	no	0.460	0.389	0.263	1e-05
Q9BRJ2	306	39S ribosomal protein L45	yes	no	0.784	0.774	0.228	2e-05
Q616T6	361	Probable 39S ribosomal pr	N/A	no	0.460	0.385	0.25	3e-05

>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster GN=mRpL45 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 107 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLR--KSGYSKQK 164
           IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query: 165 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 224
           F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query: 225 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 281
            R + AR+  V   +    F Q+T+ F ++Q    YD  G  + G    E++ +D+    
Sbjct: 223 PRVVHARVTEVITKE--NQFAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277

Query: 282 VFEKSLFHPGAYWRLCGRI 300
           VFEK + +    WRL  +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296

Drosophila melanogaster (taxid: 7227)

>sp|Q4QQQ4|RM45_XENTR 39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis GN=mrpl45 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 105 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 162
           ++I+    I++PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 163 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 222
           + F  +A +L+   +  +   D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189

Query: 223 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 280
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQSLTIYDRFGRVMCGSEEPRDVL--EY 244

Query: 281 WVFEKSLFHPGAYWRLCGRI 300
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus tropicalis (taxid: 8364)

>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial OS=Mus musculus GN=Mrpl45 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 14/226 (6%)

Query: 79  YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
           Y  EK F     KA     Q +    + ++    I++PY P E         +++G  + 
Sbjct: 50  YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query: 139 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
            + +     S  AI K+R+  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct: 109 TERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query: 197 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 256
           +  +  ++K     + +V W  +E +   + +  R  G+   + + ++ Q+T+    +Q 
Sbjct: 169 FPDMVWDLK-----YKTVRWGFVESLEPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQT 221

Query: 257 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
              YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct: 222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

Mus musculus (taxid: 10090)

>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS=Xenopus laevis GN=mrpl45 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 105 VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 162
           ++I+    I +PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 163 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 222
           + F  +A +++   +  + N D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189

Query: 223 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 280
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQTLIVYDRFGRVMCGSEEPRDVL--EY 244

Query: 281 WVFEKSLFHPGAYWRLCGRI 300
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus laevis (taxid: 8355)

>sp|Q3T142|RM45_BOVIN 39S ribosomal protein L45, mitochondrial OS=Bos taurus GN=MRPL45 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%)

Query: 79  YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
           Y  EK F     KA     Q      + ++    I++ Y P E         +++G  + 
Sbjct: 50  YKTEKEFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQR 108

Query: 139 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
            + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   L   VTE  
Sbjct: 109 TERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENC 168

Query: 197 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 256
           +  +  +IK     + +V+W  +E +   + ++ R   +     +  + Q+T+    +Q 
Sbjct: 169 FPDMVWDIK-----YKTVSWSFVESLEPPQVVQVRCSSLVTK--SNTYGQVTVRMHTRQT 221

Query: 257 FEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
              YD  G  + G +     V +  VFEK L +P   WR+ G+I
Sbjct: 222 LAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265

Bos taurus (taxid: 9913)

>sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis elegans GN=Y119D3B.16 PE=3 SV=3

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 156 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 212
           +K G+ K   + F  +A D+Y + +  +   DKT++ K +TE  ++ +  +++       
Sbjct: 164 KKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVEN-----G 218

Query: 213 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 272
           SV +ELI  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 219 SVRFELISVLEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLAVYDRFGGLLLGSED 277

Query: 273 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
           +E  V +  VFE  +      WRL G+I
Sbjct: 278 EEKDVVEYVVFENHIAVVDGEWRLHGKI 305

Caenorhabditis elegans (taxid: 6239)

>sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 111/271 (40%), Gaps = 34/271 (12%)

Query: 49  SCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATA--QPKAPAQARQMQGALKVS 106
           SCL +  G   W R   +  +S+     +    +KRF     QPK   +   MQ A K  
Sbjct: 10  SCLSRFLGW--WFRQPVLVTQSAAI---VPVRTKKRFTPPIYQPKFKTEKEFMQHARKAG 64

Query: 107 ISSP-------------GFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIA 153
           +  P               I++ Y P E         +++G     + +   + S  +I 
Sbjct: 65  LVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISS-LSKEGLIERTERMKKTMASQVSIR 123

Query: 154 KLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
           +++   + +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK     +
Sbjct: 124 RIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----Y 178

Query: 212 SSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-- 269
            +V W  +E +     ++ R   +   +   V+ Q+T+    +Q    YD  G  + G  
Sbjct: 179 KTVRWSFVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQE 236

Query: 270 DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
           D  K+VL  +  VFEK L +P   WR+  +I
Sbjct: 237 DVPKDVL--EYVVFEKQLTNPYGSWRMHTKI 265

Homo sapiens (taxid: 9606)

>sp|Q616T6|RM45_CAEBR Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis briggsae GN=CBG15146 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 156 RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 212
           +K G+ K   + F  +A D+Y+  +  M   DK  + + +TE  ++ +  +++       
Sbjct: 167 KKQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVEN-----G 221

Query: 213 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 272
           SV +EL+  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 222 SVRFELVSIVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLALYDRFGGLILGSED 280

Query: 273 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
           +E  V +  VFE  +      WRL G+I
Sbjct: 281 EEKDVVEYVVFENHIAVVDGEWRLHGKI 308

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
388499100	305	unknown [Lotus japonicus]	0.986	0.977	0.649	1e-108
356576761	309	PREDICTED: probable 39S ribosomal protei	0.986	0.964	0.637	1e-106
449485732	302	PREDICTED: probable 39S ribosomal protei	0.970	0.970	0.662	1e-105
449435699	302	PREDICTED: uncharacterized protein LOC10	0.970	0.970	0.658	1e-105
255542538	619	pentatricopeptide repeat-containing prot	0.907	0.442	0.690	1e-102
186526131	296	Mitochondrial inner membrane translocase	0.976	0.996	0.617	1e-101
297808779	314	protein translocase [Arabidopsis lyrata	0.980	0.942	0.593	1e-101
145334561	313	Mitochondrial inner membrane translocase	0.976	0.942	0.584	2e-99
224123246	233	predicted protein [Populus trichocarpa]	0.738	0.957	0.768	4e-98
359487996	379	PREDICTED: 39S ribosomal protein L45, mi	0.675	0.538	0.779	9e-93

>gi|388499100|gb|AFK37616.1| unknown [Lotus japonicus]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/302 (64%), Positives = 232/302 (76%), Gaps = 4/302 (1%)

Query: 1   MAFLRRLLTNHALNRT--VGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGAL 58
           M  L+R      L R+  +G   S+YLLGS RSYS+ +S   E   ++  S L K H   
Sbjct: 1   MMPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKCHDGF 60

Query: 59  PWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYA 118
           P   G T+TLRS++A +  +++N+KR  + Q K  + +R +    ++S+SSPGFIYEPY 
Sbjct: 61  PLAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAV--GTQISVSSPGFIYEPYE 118

Query: 119 PREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINT 178
           PRE IPFW+RWFTR GW+RTK D+ILELKSAYAI KLRKSGYSK +FY EA  +YKEIN 
Sbjct: 119 PREKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINA 178

Query: 179 LMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRN 238
           L+ANGDK SLRKAVTEKMYSALKNEIKQRE+ W+ V WELIEP+I++RTLRARLIGVD  
Sbjct: 179 LIANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRVRTLRARLIGVDPK 238

Query: 239 DLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 298
           DLNKVFVQLTLE  AKQKFEAYDSKG  VAGDK KEVLVRDIWVFEKS+FHPGAYWRLCG
Sbjct: 239 DLNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCG 298

Query: 299 RI 300
           R+
Sbjct: 299 RL 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576761|ref|XP_003556498.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Glycine max]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/301 (63%), Positives = 234/301 (77%), Gaps = 3/301 (0%)

Query: 1   MAFLRRLLTNHALNRTVGVSESA-YLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
           M   +RL     L R+  + ES+ YLLGS +SYSS +S   E   ++  S L K     P
Sbjct: 2   MTPFKRLHLVRTLYRSSQIGESSSYLLGSCKSYSSALSNGSEGNFRSFHSHLLKGQDGFP 61

Query: 60  WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAP 119
           +    ++TLRS++A +  +++N +R  + Q KA AQARQ+    ++S+SSPGFIYEPY P
Sbjct: 62  FAGVKSLTLRSTMAAELSIFMNNRRMLSTQVKASAQARQV--GQQISLSSPGFIYEPYEP 119

Query: 120 REAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTL 179
           R+ IPFW+RWFTR G RRTK+DIILELKSAYAIAKLRK+GYSK +FY EA ++YKEINTL
Sbjct: 120 RDKIPFWKRWFTRSGLRRTKNDIILELKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTL 179

Query: 180 MANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRND 239
           +A GDK +LRKAVTE M+SALKNEIKQRE+ WS V WE++EP++K+RTLRARLIGVDR D
Sbjct: 180 IAKGDKRTLRKAVTENMFSALKNEIKQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKD 239

Query: 240 LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGR 299
           LNK F+QLTLE LAKQKFEAYDSKG  VAGDK+KEVLVRDIWVFEKS+FH GA WRLCGR
Sbjct: 240 LNKTFIQLTLEILAKQKFEAYDSKGSVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCGR 299

Query: 300 I 300
           I
Sbjct: 300 I 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485732|ref|XP_004157259.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Cucumis sativus]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/299 (66%), Positives = 232/299 (77%), Gaps = 6/299 (2%)

Query: 4   LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
           LR L T   L RT  +      +GSS +YS G++ V ++  Q  SS L   H A    RG
Sbjct: 6   LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62

Query: 64  STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPRE 121
             M + S++A + L++ +    R  T Q KAP QARQ  G LKV++ SPGFIYEPY+PR+
Sbjct: 63  HKMIICSAVAAEFLVFSHGIGIRLVTTQVKAPPQARQKIG-LKVTMLSPGFIYEPYSPRQ 121

Query: 122 AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMA 181
            +PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+A
Sbjct: 122 QLPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIA 181

Query: 182 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 241
           NGDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL 
Sbjct: 182 NGDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLE 241

Query: 242 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
           KVFVQLTLE LAKQKFEAY+S+G  VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 242 KVFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435699|ref|XP_004135632.1| PREDICTED: uncharacterized protein LOC101211143 [Cucumis sativus]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/299 (65%), Positives = 231/299 (77%), Gaps = 6/299 (2%)

Query: 4   LRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPWTRG 63
           LR L T   L RT  +      +GSS +YS G++ V ++  Q  SS L   H A    RG
Sbjct: 6   LRSLQT---LYRTPKIRPFTSPIGSSANYSCGITNVSQLGIQKTSSFLSNSHSAFSLARG 62

Query: 64  STMTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPRE 121
             M + S++A +  ++ +    R  T Q KAP QARQ  G LKV++ SPGFIYEPY+PR+
Sbjct: 63  HKMIICSAVAAEFSVFSHGIGIRLVTTQVKAPPQARQKIG-LKVTMLSPGFIYEPYSPRQ 121

Query: 122 AIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMA 181
            +PFW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+A
Sbjct: 122 QLPFWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIA 181

Query: 182 NGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLN 241
           NGDKTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL 
Sbjct: 182 NGDKTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLE 241

Query: 242 KVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
           KVFVQLTLE LAKQKFEAY+S+G  VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 242 KVFVQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/275 (69%), Positives = 216/275 (78%), Gaps = 1/275 (0%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYLLGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALPW 60
           MA LRRL    AL+RT      + LL SSRSY S  S   E  SQ I     K H A PW
Sbjct: 1   MALLRRLQAIRALSRTAESRNPSCLLQSSRSYYSDFSNGLEFNSQRIFLSPYKGHNAFPW 60

Query: 61  TRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPR 120
           T GSTMT +SS   +   ++N+KR  T Q +AP QARQM GALKVS+SSPGFIYEPYAPR
Sbjct: 61  THGSTMTHQSSTPIELSTFVNDKRLLTTQARAPPQARQM-GALKVSVSSPGFIYEPYAPR 119

Query: 121 EAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLM 180
           E IPFWRRWFT+ GWRRTK+DIILELKSAYA++KLRKSGYSK + Y EA++LYKEI+T++
Sbjct: 120 EPIPFWRRWFTKSGWRRTKEDIILELKSAYAVSKLRKSGYSKHQLYKEAIELYKEISTMI 179

Query: 181 ANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDL 240
           ANGDK SLRKAVTEKMYS LKNEIKQRESMWS V WEL+EP+IK+RTLRARLIGVDR+D 
Sbjct: 180 ANGDKNSLRKAVTEKMYSELKNEIKQRESMWSKVYWELVEPVIKIRTLRARLIGVDRSDF 239

Query: 241 NKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEV 275
           +KVF+QLTLE L KQKFEAYDSK   VAGDKTKE+
Sbjct: 240 SKVFIQLTLELLTKQKFEAYDSKDTVVAGDKTKEL 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186526131|ref|NP_001119286.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/303 (61%), Positives = 228/303 (75%), Gaps = 8/303 (2%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL-LGSSRSYSSGVSIVPEIYSQNISSCLCKDHGALP 59
           M+ +RR  T  +L +T G  ES+ L  G  RSY S +  VPE + ++  S L + H    
Sbjct: 1   MSLVRRFQTVRSLLKTAGSRESSSLPFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSV-- 58

Query: 60  WTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAP 119
               +T  LRS++  + L ++NEKR AT Q KAP Q  Q  GA++VS+ SPGF+YEPYA 
Sbjct: 59  ----NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQL-QKTGAVRVSMVSPGFVYEPYAL 113

Query: 120 REAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTL 179
           RE I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN  
Sbjct: 114 REKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQ 173

Query: 180 MANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRND 239
           MANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE++EP++K+RTL+ARLIG+DR D
Sbjct: 174 MANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTD 233

Query: 240 LNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGR 299
           L K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVRDIWVFEKSLFH GAYWRLCGR
Sbjct: 234 LKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGR 293

Query: 300 IKI 302
           IK+
Sbjct: 294 IKL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/320 (59%), Positives = 231/320 (72%), Gaps = 24/320 (7%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
           MA +RR  T  +L +T G  ES+ L                   G  RSY S +  VPE 
Sbjct: 1   MALVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLYQVPEA 60

Query: 43  YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGA 102
           + +++ S L + H        +T  LRS++  +SL + N+KR AT Q KAP Q  Q  GA
Sbjct: 61  HGKSVYSRLYEGH-----NNANTHLLRSTMIAESLPFTNDKRSATTQVKAPPQL-QKTGA 114

Query: 103 LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSK 162
           ++VS+ SPGF+YEPYA +E I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK
Sbjct: 115 VRVSMVSPGFVYEPYALQEKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSK 174

Query: 163 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 222
             FY EA++LYK+IN LMANGDK ++RK VTE+MYSALKNEIKQRE+MW  V WE+IEP+
Sbjct: 175 NTFYIEALELYKQINILMANGDKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMIEPV 234

Query: 223 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 282
           +K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG  VAGD+ KEVLVRDIWV
Sbjct: 235 VKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVVAGDRNKEVLVRDIWV 294

Query: 283 FEKSLFHPGAYWRLCGRIKI 302
           FEKSLFH GAYWRLCGRIK+
Sbjct: 295 FEKSLFHTGAYWRLCGRIKL 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334561|ref|NP_001078626.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana] gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/320 (58%), Positives = 228/320 (71%), Gaps = 25/320 (7%)

Query: 1   MAFLRRLLTNHALNRTVGVSESAYL------------------LGSSRSYSSGVSIVPEI 42
           M+ +RR  T  +L +T G  ES+ L                   G  RSY S +  VPE 
Sbjct: 1   MSLVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDDFRFGCWRSYHSSLCHVPEA 60

Query: 43  YSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGA 102
           + ++  S L + H        +T  LRS++  + L ++NEKR AT Q KAP Q  Q  GA
Sbjct: 61  HGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQL-QKTGA 113

Query: 103 LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSK 162
           ++VS+ SPGF+YEPYA RE I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK
Sbjct: 114 VRVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSK 173

Query: 163 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 222
             FY EA++LYK+IN  MANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE++EP+
Sbjct: 174 NTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPV 233

Query: 223 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWV 282
           +K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVRDIWV
Sbjct: 234 VKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWV 293

Query: 283 FEKSLFHPGAYWRLCGRIKI 302
           FEKSLFH GAYWRLCGRIK+
Sbjct: 294 FEKSLFHTGAYWRLCGRIKL 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa] gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 176/229 (76%), Positives = 199/229 (86%), Gaps = 6/229 (2%)

Query: 78  LYLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRR 137
           ++LN+KR AT +  AP QARQM G+LKVSISSPGFIYEPYAPR+ I FWRRWFT+ GWRR
Sbjct: 5   IFLNDKRSATTKVNAPPQARQM-GSLKVSISSPGFIYEPYAPRDTISFWRRWFTKSGWRR 63

Query: 138 TKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 197
           TK+DIILELK+AYAI KLRK+GYSK KFY EA+ LYKEINTL+ANGDKT+LRKAVTEKMY
Sbjct: 64  TKNDIILELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMY 123

Query: 198 SALKNEIKQRESMW--SSVNWELIEPIIKMRTLRARL---IGVDRNDLNKVFVQLTLEFL 252
           S LKNEIKQR+S W  S + WE+IEP + +RTLRARL   IGVD++DLNKVF+QLTLE  
Sbjct: 124 SELKNEIKQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIK 183

Query: 253 AKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 301
            KQKFEAYDSKG  VAGDK KE+LVR+IWVFEKSLFHPGAYWRLCGRIK
Sbjct: 184 TKQKFEAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCGRIK 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487996|ref|XP_002284948.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Vitis vinifera]

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 183/204 (89%)

Query: 99  MQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS 158
           ++GALKVS+ SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK 
Sbjct: 176 VKGALKVSMQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKI 235

Query: 159 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 218
           GYS+QKFYTEAVDLYKEIN+ +AN  K SLRK+VTE MYSALKNEIKQRES W  V WE+
Sbjct: 236 GYSRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEM 295

Query: 219 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 278
           +EP++K+RTLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG  VAGDK KEVLVR
Sbjct: 296 VEPVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVR 355

Query: 279 DIWVFEKSLFHPGAYWRLCGRIKI 302
           D+WVFE+SLFHPGAYWRLCGRI +
Sbjct: 356 DVWVFERSLFHPGAYWRLCGRISL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:4010713974	313	AT5G27395 [Arabidopsis thalian	0.850	0.821	0.651	3.6e-89
FB|FBgn0263863	361	mRpL45 "mitochondrial ribosoma	0.609	0.509	0.287	1.2e-12
RGD|1304913	306	Mrpl45 "mitochondrial ribosoma	0.701	0.692	0.256	1.5e-09
ZFIN|ZDB-GENE-040426-1041	317	mrpl45 "mitochondrial ribosoma	0.639	0.608	0.240	3.9e-09
MGI|MGI:1914286	306	Mrpl45 "mitochondrial ribosoma	0.701	0.692	0.243	4.5e-09
UNIPROTKB|F6XHK1	302	MRPL45 "Uncharacterized protei	0.774	0.774	0.25	3e-08
UNIPROTKB|E2R6H1	303	MRPL45 "Uncharacterized protei	0.774	0.772	0.25	3e-08
UNIPROTKB|E1BTZ8	261	MRPL45 "Uncharacterized protei	0.589	0.681	0.260	3.1e-08
UNIPROTKB|J9P063	323	J9P063 "Uncharacterized protei	0.695	0.650	0.25	1.1e-07
UNIPROTKB|F6UMJ5	325	F6UMJ5 "Uncharacterized protei	0.695	0.646	0.25	1.1e-07

TAIR|locus:4010713974 AT5G27395 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 172/264 (65%), Positives = 207/264 (78%)

Query:    39 VPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQ 98
             VPE + ++  S L + H        +T  LRS++  + L ++NEKR AT Q KAP Q  Q
Sbjct:    57 VPEAHGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQL-Q 109

Query:    99 MQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS 158
               GA++VS+ SPGF+YEPYA RE I  WRR FTR GWRRTK+D I EL+SAYAIAKLRK+
Sbjct:   110 KTGAVRVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKT 169

Query:   159 GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 218
             GYSK  FY EA++LYK+IN  MANG+K ++RK VTE+MYSALKNEIKQRE+MW  V WE+
Sbjct:   170 GYSKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEM 229

Query:   219 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVR 278
             +EP++K+RTL+ARLIG+DR DL K F+QLTLEFL KQKFEAYD+KG   AGDK KEVLVR
Sbjct:   230 VEPVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVR 289

Query:   279 DIWVFEKSLFHPGAYWRLCGRIKI 302
             DIWVFEKSLFH GAYWRLCGRIK+
Sbjct:   290 DIWVFEKSLFHTGAYWRLCGRIKL 313

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

FB|FBgn0263863 mRpL45 "mitochondrial ribosomal protein L45" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query:   107 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 164
             IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct:   109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query:   165 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 224
             F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct:   168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query:   225 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK--TKEVLVRDIWV 282
              R + AR+  V   + N+ F Q+T+ F ++Q    YD  G  + G +  TK+VL  +  V
Sbjct:   223 PRVVHARVTEVITKE-NQ-FAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVL--EYVV 278

Query:   283 FEKSLFHPGAYWRLCGRI 300
             FEK + +    WRL  +I
Sbjct:   279 FEKHISNEYGKWRLHDKI 296

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

RGD|1304913 Mrpl45 "mitochondrial ribosomal protein L45" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 58/226 (25%), Positives = 102/226 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
             Y  EK F     KA     Q +    + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:   139 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
              + +   + S  AI K+++  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNVASQLAIRKIKEFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   197 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 256
             +  +  E+K +   WS V  E +EP    + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWELKYKTVRWSFV--ESLEPA---QVVHVRSSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   257 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0005739 "mitochondrion" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1041 mrpl45 "mitochondrial ribosomal protein L45" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 49/204 (24%), Positives = 94/204 (46%)

Query:    99 MQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK- 157
             M+  + +S +  G IY+PY P E         T++G ++  + +     S  AI K++  
Sbjct:    78 MERPINISCTVAG-IYDPYVPPEGDARLST-LTKEGLKQRTEQLRQTAASQLAIRKIKDY 135

Query:   158 -SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNW 216
              S ++ ++F      ++ + +  +   +K  L   VTE+ Y  +      R + + ++ W
Sbjct:   136 DSTFTSKEFPGIGQQIFIDAHAALTEFNKEKLHSLVTERCYPEMV-----RGNRYKTLRW 190

Query:   217 ELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVL 276
               IE +   R ++AR    D      ++ Q+T+   ++Q    YD  G  + GD+ +   
Sbjct:   191 RFIESLEPPRLVQARC--PDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRD 248

Query:   277 VRDIWVFEKSLFHPGAYWRLCGRI 300
             V +  V E+ L +P   WRL G+I
Sbjct:   249 VLEYLVMERHLVNPYGRWRLHGKI 272

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

MGI|MGI:1914286 Mrpl45 "mitochondrial ribosomal protein L45" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 55/226 (24%), Positives = 100/226 (44%)

Query:    79 YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
             Y  EK F     KA     Q +    + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:   139 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
              + +     S  AI K+R+  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   197 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 256
             +  +  ++K     + +V W  +E +   + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWDLK-----YKTVRWGFVESLEPAQVVHVRCSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   257 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F6XHK1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 68/272 (25%), Positives = 122/272 (44%)

Query:    50 CLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFA--TAQPKAPAQARQMQGALKVSI 107
             CL K  G   W+R   +  +S++    +    +KRF   T +PK  ++   M+ A K  +
Sbjct:    11 CLSKALGW--WSRQPVLVTQSTVV---VPVRTKKRFTPPTYEPKYKSEKEFMEYARKAGL 65

Query:   108 SSP-------------GFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAK 154
               P               I++ Y P E          ++G  +  + +  ++ S  +I K
Sbjct:    66 VIPPERLERPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRK 124

Query:   155 LRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 212
             +R+    +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK +   WS
Sbjct:   125 IREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWS 184

Query:   213 SVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG- 269
              V  E +EP  ++++R   + L+    N  N ++ Q+T+    +Q    YD  G  + G 
Sbjct:   185 FV--ESLEPPQVVQVRC--SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235

Query:   270 -DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
              D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   236 EDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|E2R6H1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 68/272 (25%), Positives = 122/272 (44%)

Query:    50 CLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFA--TAQPKAPAQARQMQGALKVSI 107
             CL K  G   W+R   +  +S++    +    +KRF   T +PK  ++   M+ A K  +
Sbjct:    11 CLSKALGW--WSRQPVLVTQSTVV---VPVRTKKRFTPPTYEPKYKSEKEFMEYARKAGL 65

Query:   108 SSP-------------GFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAK 154
               P               I++ Y P E          ++G  +  + +  ++ S  +I K
Sbjct:    66 VIPPERLERPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRK 124

Query:   155 LRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 212
             +R+    +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK +   WS
Sbjct:   125 IREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWS 184

Query:   213 SVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG- 269
              V  E +EP  ++++R   + L+    N  N ++ Q+T+    +Q    YD  G  + G 
Sbjct:   185 FV--ESLEPPQVVQVRC--SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQ 235

Query:   270 -DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
              D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   236 EDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|E1BTZ8 MRPL45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 50/192 (26%), Positives = 89/192 (46%)

Query:   113 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAV 170
             I +PY P E         +++G ++  + +     S  A+ K++     +S + F   A 
Sbjct:    67 IIDPYVPPEGDARVTS-LSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQ 125

Query:   171 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 230
             ++Y E +  +AN +K  L   VTE+ Y  +      R + + ++ W  +E +   R    
Sbjct:   126 EIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RGNRYKTIRWSFVESLEPPRVAHV 180

Query:   231 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG-VTVAGDKT-KEVLVRDIWVFEKSLF 288
             R   V  N  N ++ Q+T+    +Q    YD  G +   G+K  K+VL  +  VFE+ L 
Sbjct:   181 RCTSVV-NQGN-LYGQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVL--EYVVFERYLV 236

Query:   289 HPGAYWRLCGRI 300
             +P   WR+ G+I
Sbjct:   237 NPYGTWRMHGKI 248

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

UNIPROTKB|J9P063 J9P063 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 57/228 (25%), Positives = 103/228 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
             Y +E  F    PKA       +    + ++    I++ Y P E          ++G  + 
Sbjct:    74 YKSEMEFMEYAPKAGLVIPPERLECPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQR 132

Query:   139 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
              + +  ++ S  +I K+R+    +  + F  +  D++ E +  + N D   L   VTE  
Sbjct:   133 SEQLKKKVASQLSIRKIREHDPNFKIKDFPEKKKDIFIEAHLCLNNSDHDRLHTLVTENG 192

Query:   197 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 254
             +  +  +IK +   WS V  E +EP  ++++R L   L+    N  N ++ Q+T+    +
Sbjct:   193 FPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRCLN--LL----NQGN-IYGQVTVRMHIR 243

Query:   255 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   244 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 289

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F6UMJ5 F6UMJ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 57/228 (25%), Positives = 103/228 (45%)

Query:    79 YLNEKRFATAQPKAPAQARQMQGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 138
             Y +E  F    PKA       +    + ++    I++ Y P E          ++G  + 
Sbjct:    73 YKSEMEFMEYAPKAGLVIPPERLECPLHLACTAGIFDAYVPPEGDARLSS-LAKEGLAQR 131

Query:   139 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196
              + +  ++ S  +I K+R+    +  + F  +  D++ E +  + N D   L   VTE  
Sbjct:   132 SEQLKKKVASQLSIRKIREHDPNFKIKDFPEKKKDIFIEAHLCLNNSDHDRLHTLVTENG 191

Query:   197 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 254
             +  +  +IK +   WS V  E +EP  ++++R L   L+    N  N ++ Q+T+    +
Sbjct:   192 FPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRCLN--LL----NQGN-IYGQVTVRMHIR 242

Query:   255 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   243 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLVNPYGSWRMHGKI 288

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_602903.1 annotation not avaliable (314 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
smart00978	147	smart00978, Tim44, Tim44 is an essential component	3e-24
pfam04280	146	pfam04280, Tim44, Tim44-like domain	4e-23
COG4395	281	COG4395, COG4395, Uncharacterized protein conserve	2e-04

>gnl|CDD|214950 smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane

 Score = 95.5 bits (238), Expect = 3e-24
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 148 SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 207
            A    K    G+  ++F   A D +  I      GD  +LR+ +T +MY+ L  +I +R
Sbjct: 2   KALREIKRIDPGFDTERFLEGAKDAFPMIQEAWDRGDLETLRELLTPEMYNELAAQIAER 61

Query: 208 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 267
           E+    V  + +  I  +    A L      D       +T+ F  +Q     D+KG  V
Sbjct: 62  EARGLFVENK-LLDIDVVVLDAALLEAWQEGD----GAVITVRFHGQQIDVTRDAKGGVV 116

Query: 268 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 298
            G + K     ++W F + L +    WRL G
Sbjct: 117 VGGEDKPKEFTEVWTFTRDL-NGDPNWRLSG 146

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. Length = 147

>gnl|CDD|202957 pfam04280, Tim44, Tim44-like domain

 Score = 92.3 bits (230), Expect = 4e-23
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 148 SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 207
           +A    K     +  ++F   A + Y+ I    A GD  +LR+ +T ++Y      I +R
Sbjct: 2   AALRAIKAADPSFDVEEFLEGAREAYEMIQEAWARGDLETLRELLTPEVYEEFAAAIAER 61

Query: 208 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 267
           E+   + +  ++          A L+             +T+ F+A+      D+ G  V
Sbjct: 62  EAQGLTNDSTIV------GIRDAELLEAKMEGD---EAVVTVRFVAQLISVTDDASGEVV 112

Query: 268 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 298
            GD  + V V ++W FE+ L  P   WRL G
Sbjct: 113 EGDPDEPVEVTEVWTFERDLGSPDPNWRLVG 143

Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane. Length = 146

>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 163 QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 222
            +F   A   Y+ I      GD+ +LR+ +T ++   L+ EI +RES             
Sbjct: 150 ARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERES------------- 196

Query: 223 IKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 277
            K  T ++  + + + D+ +  V       T+    +      D  G  V GD  K    
Sbjct: 197 -KGETNQSSFVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEF 255

Query: 278 RDIWVFEKSLFHPGAYWRLCG 298
            ++W F +        W+L  
Sbjct: 256 AELWTFTRDTGSRDPNWKLAA 276

Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	100.0
PF04280	147	Tim44: Tim44-like domain; InterPro: IPR007379 Tim4	99.97
TIGR00984	378	3a0801s03tim44 mitochondrial import inner membrane	99.92
COG4395	281	Uncharacterized protein conserved in bacteria [Fun	99.89
PF07961	235	MBA1: MBA1-like protein; InterPro: IPR024621 Mba1	99.89
KOG2580	459	consensus Mitochondrial import inner membrane tran	99.82
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	97.8
PF13355	117	DUF4101: Protein of unknown function (DUF4101)	95.84
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	94.57
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	89.41

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.1e-40  Score=308.54  Aligned_cols=250  Identities=17%  Similarity=0.249  Sum_probs=223.4

Q ss_pred             cccccccccccccccccccccCCCCCCccccccccccccCccccccccc-----cccCccCCCC---ChhHhhhcCcceE
Q 022110           34 SGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNE-----KRFATAQPKA---PAQARQMQGALKV  105 (302)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~i  105 (302)
                      -++++.+|      ..+|--+||-|.|+.   +++.|+-..++|+....     ++.++.+..+   .+|+.|++.  +|
T Consensus        39 qn~Ip~~~------~d~l~t~~~f~~f~~---l~~~kfe~~d~p~~~~k~~~i~kek~k~~~~a~~v~~Pr~~ne~--~i  107 (379)
T KOG4599|consen   39 QNFIPDPE------NDSLNTKEWFPSFKN---LSGAKFESGDDPDPILKRTIISKEKMKSANKAGLVIPPRKWNER--PI  107 (379)
T ss_pred             hhhCcchh------ccCCCChhhhhhhhc---cCcccccccCCccccccccchhhhhhccccccccccCCcccccc--ce
Confidence            44555553      444556799999999   99999999999998874     3455555554   555669998  99


Q ss_pred             EEecCCcccccCCCCCCCCcccccccccchhhcHHHHHHHHhHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHHH
Q 022110          106 SISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----SGYSKQKFYTEAVDLYKEINTLMA  181 (302)
Q Consensus       106 ~i~s~g~I~epyvPp~~~~~~~~~~t~~g~k~~~~~l~~~~ks~~al~kir~----p~F~~~~F~~~Ak~iy~~I~eA~a  181 (302)
                      .++|+|+|||+||||+|+++ .+.++..|+.+..+.+.+++.++++++.+++    .+|+.++|-+.|+++|+++|.|++
T Consensus       108 ~f~~~~gIfD~yVPPegdg~-~~~l~skg~~~~~~~~~k~~~~q~sir~i~~k~~~~~F~ik~f~~kakDifIqaH~~l~  186 (379)
T KOG4599|consen  108 HFSCTGGIFDAYVPPEGDGK-KSILSSKGLIQKTEILEKTVASQMSIRRIRDKDEIENFEIKDFGAKAKDIFIQAHLCLN  186 (379)
T ss_pred             EEEeecccccccCCCCCCcc-cchhcCcchhHHHHHHHHHHHHHhhhhhhccCCcccceeccccchHhHHHHHHHHHHHh
Confidence            99999999999999999997 7788999999999999999999999999998    589999999999999999999999


Q ss_pred             cCCHHHHHHhhcH---------------HHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEE
Q 022110          182 NGDKTSLRKAVTE---------------KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ  246 (302)
Q Consensus       182 ~gD~~~Lr~lvTe---------------~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~Q  246 (302)
                      +.|+..+..++||               .||+.|...++.     .+++|+||.+++|+++|++||.+..+. ..+.++|
T Consensus       187 ~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k~K~-----~~vR~~~vs~leP~~vv~~rc~d~~~~-s~n~~aq  260 (379)
T KOG4599|consen  187 NSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEKVKK-----GTVRWSFVSVLEPSRVVYVRCDDDNDK-SGNFIAQ  260 (379)
T ss_pred             cChHHHHHHHhhccccccccCCCccchhhhccccchhhcc-----CceeEEEEeecccceeEEEEecCCccc-cccccee
Confidence            9999999999999               999999988654     489999999999999999999876654 2689999


Q ss_pred             EEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022110          247 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  301 (302)
Q Consensus       247 VTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~  301 (302)
                      ||||+|++|.+++||++|+++.|+++..+||+||+||+.|+.+.++.||++++|.
T Consensus       261 itvRkh~~q~Lavydrfg~lm~g~E~i~KDv~eyvvfe~hi~~~~g~wr~h~kiv  315 (379)
T KOG4599|consen  261 ITVRKHTRQCLAVYDRFGRLMFGSEDIKKDVLEYVVFENHIQNAYGRWRLHKKIV  315 (379)
T ss_pred             eehHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHhhhhhhhhhhhccccc
Confidence            9999999999999999999999999999999999999999999999999999874

>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []

Probab=99.97  E-value=4.8e-31  Score=223.27  Aligned_cols=144  Identities=30%  Similarity=0.460  Sum_probs=123.9

Q ss_pred             HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccce
Q 022110          149 AYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR  226 (302)
Q Consensus       149 ~~al~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~r  226 (302)
                      +.|++.|++  |+|++..|+++|+++|..|++||++||++.|+++||+++|+.|..+++.+...|.+      +..+.+.
T Consensus         2 a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~------~~~~~v~   75 (147)
T PF04280_consen    2 ASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEV------NDPEIVR   75 (147)
T ss_dssp             HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEE------EEEEEEE
T ss_pred             chHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCc------ccceEEE
Confidence            456777776  99999999999999999999999999999999999999999999999999877753      4566777


Q ss_pred             EEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022110          227 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  301 (302)
Q Consensus       227 vv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~  301 (302)
                      +++++++++...   +.+++|||+|+++|+++++|+.|++++|+++.+..+.|||+|+|++++++++|+|+|+.+
T Consensus        76 i~~~~i~~~~~~---~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i~q  147 (147)
T PF04280_consen   76 IDNAEIVEAEQE---GNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGSPNPNWRLAGIQQ  147 (147)
T ss_dssp             EEEEEEEEEEEE---TTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TTCCCTEEEEEEE-
T ss_pred             EEEEEeeeceee---CCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCCCCCCEEEEEEeC
Confidence            888888877654   799999999999999999999999999999999999999999999999999999999864

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit

Probab=99.92  E-value=6e-24  Score=205.76  Aligned_cols=147  Identities=20%  Similarity=0.301  Sum_probs=125.8

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeee
Q 022110          142 IILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  218 (302)
Q Consensus       142 l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~i-y~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~  218 (302)
                      +..+...+.+|++|+.  |+|++..|+.+|+++ |++|.+||++||.+.|+.||++.+|+.|...|++|...|.+++-+|
T Consensus       221 lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~i  300 (378)
T TIGR00984       221 MFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRI  300 (378)
T ss_pred             ccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEE
Confidence            4446667888999997  999999999999998 8999999999999999999999999999999999999998655443


Q ss_pred             ecccccceEEEEEEeeeecccc-C-CcEEEEEEEEEeEEeeEEEcCC-CceecCCCCCeeeeeEEEEEEEeCCC----CC
Q 022110          219 IEPIIKMRTLRARLIGVDRNDL-N-KVFVQLTLEFLAKQKFEAYDSK-GVTVAGDKTKEVLVRDIWVFEKSLFH----PG  291 (302)
Q Consensus       219 ve~le~~rvv~arli~i~~~~~-~-~~~~QVTVRF~s~Q~lavyD~~-GrlV~G~~d~~~dV~EyWVFeR~l~~----~~  291 (302)
                               |+++=++|..+.+ + ++.+.|+|+|.++|+.|++|++ |+||+|+++.+..+.+.|+|+|++..    ++
T Consensus       301 ---------L~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~  371 (378)
T TIGR00984       301 ---------LDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVAGDPDNIQRINYAWVFTRDVEELDNPET  371 (378)
T ss_pred             ---------eeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceeeCCCCceeEEEEEEEEEEcccccCCCCC
Confidence                     3333333333333 1 4689999999999999999999 99999999999999999999999863    56


Q ss_pred             CCeEEE
Q 022110          292 AYWRLC  297 (302)
Q Consensus       292 ~~WrL~  297 (302)
                      +.|||.
T Consensus       372 ~~Wrl~  377 (378)
T TIGR00984       372 LGWKIL  377 (378)
T ss_pred             Cceeec
Confidence            789985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.

>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.89  E-value=4.4e-23  Score=191.80  Aligned_cols=143  Identities=20%  Similarity=0.275  Sum_probs=124.4

Q ss_pred             HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccce
Q 022110          149 AYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR  226 (302)
Q Consensus       149 ~~al~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~r  226 (302)
                      .-+++.+.+  |.|++..|+.+|+.+|.+|++||+++|.++|++|+|+++|+.|++++.+|+..|.+..=+         
T Consensus       134 ~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~ss---------  204 (281)
T COG4395         134 AAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQSS---------  204 (281)
T ss_pred             ccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccce---------
Confidence            334556665  999999999999999999999999999999999999999999999999999888753322         


Q ss_pred             EEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110          227 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  300 (302)
Q Consensus       227 vv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  300 (302)
                      -|..-..+|...+..++..++||+|..+-+...+|+.|++|+||++.+.++.|+|+|+|...+.+++|+|.++=
T Consensus       205 fv~~~~~di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~~s~~p~W~LaaIq  278 (281)
T COG4395         205 FVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDTGSRDPNWKLAAIQ  278 (281)
T ss_pred             ecchhhhhhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccCCCCCCCceEEeee
Confidence            23333345555555689999999999999999999999999999999999999999999999999999999864

>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]

Probab=99.89  E-value=5.9e-22  Score=181.44  Aligned_cols=186  Identities=24%  Similarity=0.362  Sum_probs=158.2

Q ss_pred             eEEEecCCcccccCCCCCCCCccccccc-c-cchhhcHHHHHHHHhHHHHHHHHHh-C--CCChHHHHHHHHHHHHHHHH
Q 022110          104 KVSISSPGFIYEPYAPREAIPFWRRWFT-R-DGWRRTKDDIILELKSAYAIAKLRK-S--GYSKQKFYTEAVDLYKEINT  178 (302)
Q Consensus       104 ~i~i~s~g~I~epyvPp~~~~~~~~~~t-~-~g~k~~~~~l~~~~ks~~al~kir~-p--~F~~~~F~~~Ak~iy~~I~e  178 (302)
                      +|.+...|...|+||||..   ++++|+ + ..|+..+.++.....+.+.+.+.|. .  .+.-..+.+.|.+.|+.+++
T Consensus         9 ~~~~~~iGv~~~~yipps~---~ps~~~~P~~~~~~l~rr~~~~~~Nt~~i~~fr~~~g~k~~f~~wk~~AiE~yv~~Nk   85 (235)
T PF07961_consen    9 QFPIRHIGVMADTYIPPSF---LPSPFTSPKVWWKLLIRRLYMFALNTVSIAKFRRQTGKKPRFNEWKNKAIELYVQMNK   85 (235)
T ss_pred             cCCcccceeccccccChhh---ccCcccChhHHHHHHHHHHHHHhhhhheeeehhhhcCCCCchhHHHHHHHHHHHHHHH
Confidence            6778899999999999976   355554 3 4577788888888889988887776 3  34456999999999999999


Q ss_pred             HHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeE
Q 022110          179 LMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFE  258 (302)
Q Consensus       179 A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~la  258 (302)
                      |||+||.+.|+..|+..+++.|.+.+++++.. .++.|++++..+.|++|+.+.+.++..  ...+.|++|+|+|+|++.
T Consensus        86 aFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~~-~kl~W~L~k~~~~PKvvs~~~~~~p~~--~~~~vQ~Vvk~~TkQ~li  162 (235)
T PF07961_consen   86 AFAAGDLDKLRKICSSWVYESLAARIKQRPKN-SKLDWKLVKYNKNPKVVSFQAIPIPGG--PLEIVQFVVKFDTKQRLI  162 (235)
T ss_pred             HHHhccHHHHHHHhhHHHHHHHHHHHHhCCCC-CeeeEEEEEecCCCeEEEEeeeecCCC--CCeEEEEEEEEeeeEEEE
Confidence            99999999999999999999999999999865 589999999999999999999888764  346999999999999998


Q ss_pred             EEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110          259 AYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  300 (302)
Q Consensus       259 vyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  300 (302)
                      .+|+.+..+++.   .+||+||.||.++..  .+.|+|+|++
T Consensus       163 ~~~k~~~~~~~~---e~dvveyiV~~~d~~--t~e~~l~Gsv  199 (235)
T PF07961_consen  163 KVDKGSEKVEKK---ERDVVEYIVFQCDPW--TNEWVLWGSV  199 (235)
T ss_pred             EeccccccCCcc---ccceeeeEEEEEeCC--CCcEEEEEEe
Confidence            888776655443   569999999998754  4599999987

It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].

>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=6.3e-20  Score=177.52  Aligned_cols=151  Identities=22%  Similarity=0.321  Sum_probs=130.8

Q ss_pred             cHHHHHHHHhHHHHHHHHHh--CCCChHHHHHHHHHHH-HHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCce
Q 022110          138 TKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSV  214 (302)
Q Consensus       138 ~~~~l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~iy-~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv  214 (302)
                      .+..|..+......+.+|++  |+||.++|+.++++.. ++|.+|+-.||++.|+.||+|+.|+.+.+.+++.+..|-  
T Consensus       291 ~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv--  368 (459)
T KOG2580|consen  291 VDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGV--  368 (459)
T ss_pred             cccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCe--
Confidence            34456666777778888887  9999999999998766 679999999999999999999999999999999987664  


Q ss_pred             eeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCC--CC--
Q 022110          215 NWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLF--HP--  290 (302)
Q Consensus       215 ~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~--~~--  290 (302)
                             ..+-|+|+++=|+|....+-.+.+.+.|.|++|+++|++|.+|+||+|++|++..|.+.|||+|+..  ++  
T Consensus       369 -------~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQeI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El~~d~  441 (459)
T KOG2580|consen  369 -------YFDSKILDIRGVDIASGKMMEDGPVLIITFQAQEIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDELNPDE  441 (459)
T ss_pred             -------eecceeeeeccchhHHhhhhccCCEEEEEEeeEEEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhcCcch
Confidence                   2466778887777776666679999999999999999999999999999999999999999999764  44  


Q ss_pred             CCCeEEE
Q 022110          291 GAYWRLC  297 (302)
Q Consensus       291 ~~~WrL~  297 (302)
                      ++.|||.
T Consensus       442 ~~~WRLl  448 (459)
T KOG2580|consen  442 YAAWRLL  448 (459)
T ss_pred             hhhHHHH
Confidence            7789974

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=4.8e-06  Score=80.05  Aligned_cols=198  Identities=20%  Similarity=0.211  Sum_probs=142.6

Q ss_pred             ccccccccccccccccccccccCCCCCCccccccccccccCccccccccccccCccCCCCChhHhhhcCcceEEEecCCc
Q 022110           33 SSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGF  112 (302)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~g~  112 (302)
                      +..+.|..|..   +++.++.+|.      +.+.-...|+...+-.+|+++              ...+.++..+-|   
T Consensus       182 H~~l~~~de~k---ays~l~e~~f------vhl~~~~~t~~~~flp~m~~k--------------~K~~~vR~~~vs---  235 (379)
T KOG4599|consen  182 HLCLNNSDEMK---AYSFLTESEF------VHLKCPSITNLLHFLPVMQEK--------------VKKGTVRWSFVS---  235 (379)
T ss_pred             HHHHhcChHHH---HHHHhhcccc------ccccCCCccchhhhccccchh--------------hccCceeEEEEe---
Confidence            56777887776   8999999988      778888888888888888855              122345666666   


Q ss_pred             ccccCCCCCCCCcccccccccchhhcHHHHHHHHhHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhh
Q 022110          113 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAV  192 (302)
Q Consensus       113 I~epyvPp~~~~~~~~~~t~~g~k~~~~~l~~~~ks~~al~kir~p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lv  192 (302)
                      ++|||.-.     +.+.+..          -.++.+++|+..+|+-      + .+|.++|..++.++..+.  .+++=|
T Consensus       236 ~leP~~vv-----~~rc~d~----------~~~s~n~~aqitvRkh------~-~q~Lavydrfg~lm~g~E--~i~KDv  291 (379)
T KOG4599|consen  236 VLEPSRVV-----YVRCDDD----------NDKSGNFIAQITVRKH------T-RQCLAVYDRFGRLMFGSE--DIKKDV  291 (379)
T ss_pred             ecccceeE-----EEEecCC----------cccccccceeeehHHH------H-HHHHHHHHHHHHHhccCc--ccccch
Confidence            56665431     1121110          0112455555555541      1 188999999999999988  677777


Q ss_pred             cHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCC
Q 022110          193 TEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT  272 (302)
Q Consensus       193 Te~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d  272 (302)
                      +|  |..|...|+++..+| +++|++++..-++     +         .+.+.++++-+.+.+....|+..|.+..|+. 
T Consensus       292 ~e--yvvfe~hi~~~~g~w-r~h~kivp~wi~~-----k---------qk~~~tl~l~~lt~~~~~~~~~~~~~~~tek-  353 (379)
T KOG4599|consen  292 LE--YVVFENHIQNAYGRW-RLHKKIVPPWIPA-----K---------QKAYKTLMLFILTMEKSEAYPAGPKEAVTEK-  353 (379)
T ss_pred             hH--HHHHHHhhhhhhhhh-hhcccccCccccc-----c---------ccchheEEeehhccCchhhcccCCccchhhh-
Confidence            77  999999999999998 4999987653333     2         3589999999999999999998887776653 


Q ss_pred             CeeeeeEEEEEEEeCCCCCCCeEEEEEeeC
Q 022110          273 KEVLVRDIWVFEKSLFHPGAYWRLCGRIKI  302 (302)
Q Consensus       273 ~~~dV~EyWVFeR~l~~~~~~WrL~gki~~  302 (302)
                          ..|.-++|..+......|+|++.+.+
T Consensus       354 ----~ke~~~~e~~~~~t~~~~~lk~~~kI  379 (379)
T KOG4599|consen  354 ----FKECILKENDVEITILKGILKPQLKI  379 (379)
T ss_pred             ----hhhhhhhcccccccchhcccchhhcC
Confidence                34555588888888889999987754

>PF13355 DUF4101: Protein of unknown function (DUF4101)

Probab=95.84  E-value=0.26  Score=40.75  Aligned_cols=97  Identities=16%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             CCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcC
Q 022110          183 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS  262 (302)
Q Consensus       183 gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~  262 (302)
                      .+.+.|.+++++.|++......+.-...|.  +|++.        +.+++..|....  ..-.+++|.-.-.-....|| 
T Consensus        20 ~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~--y~~y~--------~~~~I~sv~~~~--~~~~ra~v~a~v~E~~~l~~-   86 (117)
T PF13355_consen   20 HDIDSLSEVLTGPLLSQWQDRAQWLKANGW--YWEYD--------HKLKIDSVEVFS--DSPNRATVEATVTESAQLYD-   86 (117)
T ss_pred             cchhHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEe--------eeeEEEEEEEcC--CCCCeEEEEEEEEEEEEEEe-
Confidence            456789999999999999988777666543  67762        122332222221  22344445544556667888 


Q ss_pred             CCceecC-CCCCeeeeeEEEEEEEeCCCCCCCeEEEE
Q 022110          263 KGVTVAG-DKTKEVLVRDIWVFEKSLFHPGAYWRLCG  298 (302)
Q Consensus       263 ~GrlV~G-~~d~~~dV~EyWVFeR~l~~~~~~WrL~g  298 (302)
                      .|++..+ +......|.+  .|.|.    ++.|||+.
T Consensus        87 ~g~~~~~~s~~~~~~vrY--~L~r~----~~~WkI~d  117 (117)
T PF13355_consen   87 NGQPDNNPSYDSTLRVRY--ELVRQ----NGQWKITD  117 (117)
T ss_pred             CCccccCCCCCCcEEEEE--EEEEc----CCEEEecC
Confidence            8998876 4444445554  34444    57799963

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=94.57  E-value=0.36  Score=38.99  Aligned_cols=93  Identities=15%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH--------------HHHHHHHHHHHh---ccCCceeeeeecccccceEEEE
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRE---SMWSSVNWELIEPIIKMRTLRA  230 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~--------------y~~l~~~Ik~R~---~~g~tv~W~~ve~le~~rvv~a  230 (302)
                      ..++......+++.+||.+.|++.++|++              .+++...++++.   ..+.            .+.-..
T Consensus         5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~~~i   72 (116)
T PF12893_consen    5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQ------------ERKESI   72 (116)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SST------------T-EEEE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCC------------CceeEE
Confidence            34556666788899999999999999887              346666776652   2222            111122


Q ss_pred             EEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110          231 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  300 (302)
Q Consensus       231 rli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  300 (302)
                      ..+++     .++.|.+.|.+....                   ....||++|.|.    ++.|+|..|+
T Consensus        73 ~~i~i-----~g~~A~a~v~~~~~~-------------------~~~~d~~~L~K~----dg~WkIv~k~  114 (116)
T PF12893_consen   73 LSIDI-----DGDVASAKVEYEFPG-------------------FWFVDYFTLVKT----DGGWKIVSKV  114 (116)
T ss_dssp             EEEEE-----ETTEEEEEEEEEEET-------------------EEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEEEE-----ECCEEEEEEEEEECC-------------------CceEEEEEEEEE----CCEEEEEEEe
Confidence            22333     257777777775321                   257999999997    7999999987

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=89.41  E-value=4.9  Score=30.97  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHHHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEKMYS  198 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~  198 (302)
                      ..+++-.....|+.+||.+....++++..-.
T Consensus         8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~   38 (111)
T PF12870_consen    8 TPEEVVKNFFDALKNGDYEKAYAYLSPESRE   38 (111)
T ss_dssp             -HHHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence            3466677888999999999999999988774

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	4e-17
3qk9_A	222	Mitochondrial import inner membrane translocase S	7e-10

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194

 Score = 76.8 bits (188), Expect = 4e-17
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 140 DDIILELKSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKM 196
             +  + + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  
Sbjct: 30  GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEAT 89

Query: 197 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 256
           YS L + I+Q +++    +   I  I  +     +++             L + F A+  
Sbjct: 90  YSQLAHPIQQAKALGLQFHSR-ILDIDNVDLAMGKMVEQ--------GPVLIITFQAQLV 140

Query: 257 FEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRL 296
               + KG  V GD  K + +  +W   +     +P A WRL
Sbjct: 141 MVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 182

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 145 ELKSAYAIAKLRKSGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNE 203
           E    Y+  KL    +S + F     +    EI      GD   L+K  +E  ++    +
Sbjct: 60  ESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQ 119

Query: 204 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 263
            K  +      +  +++ I  +  + A+L+             L +   A++       K
Sbjct: 120 QKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQDI------PVLVVGCRAQEINLYRKKK 172

Query: 264 -GVTVAGDKTKEVLVRDIWVFEKSL----FHPGAYWRL 296
            G   AGD+   ++     VF +            W++
Sbjct: 173 TGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	99.97
3qk9_A	222	Mitochondrial import inner membrane translocase S	99.94
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	88.96
3duk_A	125	NTF2-like protein of unknown function; structural	85.74
3blz_A	128	NTF2-like protein of unknown function; structural	85.37
3gwr_A	144	Putative calcium/calmodulin-dependent protein KIN	81.96

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=99.97  E-value=4.4e-31  Score=234.41  Aligned_cols=150  Identities=17%  Similarity=0.260  Sum_probs=131.1

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeee
Q 022110          142 IILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  218 (302)
Q Consensus       142 l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~i-y~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~  218 (302)
                      +..+.+++.+|++|++  |+||++.|+++|+++ |.+|++||++||++.|++||||+||+.|++++++|+.+|.++++++
T Consensus        32 ~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~~  111 (194)
T 2cw9_A           32 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI  111 (194)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEE
T ss_pred             ccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccEE
Confidence            4567788999999998  999999999999998 8999999999999999999999999999999999999998777766


Q ss_pred             ecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCC--eEE
Q 022110          219 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAY--WRL  296 (302)
Q Consensus       219 ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~--WrL  296 (302)
                      |.      +.++.++++..   .+..+++||+|+++|+++++|++|++|+|+++.+.+|.|+|+|+|+++..+++  |+|
T Consensus       112 v~------i~~~el~~a~~---~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~e~W~f~R~~~~~~p~~~W~L  182 (194)
T 2cw9_A          112 LD------IDNVDLAMGKM---VEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL  182 (194)
T ss_dssp             EE------EEEEEEEEEEE---ETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEE
T ss_pred             EE------ecccEEEEEEE---eCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEEEEEEEEEeCCCCCCCCCEEE
Confidence            43      23344444332   24679999999999999999999999999999999999999999999876654  999


Q ss_pred             EEEe
Q 022110          297 CGRI  300 (302)
Q Consensus       297 ~gki  300 (302)
                      +|.=
T Consensus       183 ~~iq  186 (194)
T 2cw9_A          183 LDIS  186 (194)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9863

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A

Probab=99.94  E-value=7.5e-27  Score=211.42  Aligned_cols=148  Identities=17%  Similarity=0.173  Sum_probs=120.5

Q ss_pred             HHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeec
Q 022110          144 LELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE  220 (302)
Q Consensus       144 ~~~ks~~al~kir~--p~F~~~~F~~~Ak~i-y~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve  220 (302)
                      .....+.+|++|++  |+|++..|+++|+++ |++|++||++||.+.|++|||+++|+.|.+.|++|+..|.++.     
T Consensus        57 ~~te~a~~l~~Ik~~DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d-----  131 (222)
T 3qk9_A           57 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYAD-----  131 (222)
T ss_dssp             ---CCHHHHTTCC-----CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEEC-----
T ss_pred             CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEee-----
Confidence            34555778888887  999999999999988 5789999999999999999999999999999999999987544     


Q ss_pred             ccccceEEEEEEeeeeccccC--CcEEEEEEEEEeEEeeEEEc-CCCceecCCCCCeeeeeEEEEEEEeCCCCC----CC
Q 022110          221 PIIKMRTLRARLIGVDRNDLN--KVFVQLTLEFLAKQKFEAYD-SKGVTVAGDKTKEVLVRDIWVFEKSLFHPG----AY  293 (302)
Q Consensus       221 ~le~~rvv~arli~i~~~~~~--~~~~QVTVRF~s~Q~lavyD-~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~----~~  293 (302)
                          .++|+++=++|..+++.  +..++|||+|.++|+.+++| +.|+||+|+++++..+.|+|+|+|+++..+    ++
T Consensus       132 ----~~il~I~~vdI~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~~~~~d~~~tp~  207 (222)
T 3qk9_A          132 ----GRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEG  207 (222)
T ss_dssp             ----CEEEEEEEEEEEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEECCC--------C
T ss_pred             ----eeEeeecceEEEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEcCccCCCCCCCC
Confidence                34455554555544444  48899999999999999999 889999999999999999999999997544    78


Q ss_pred             eEEEEEe
Q 022110          294 WRLCGRI  300 (302)
Q Consensus       294 WrL~gki  300 (302)
                      |+|.+.-
T Consensus       208 WkL~eiq  214 (222)
T 3qk9_A          208 WKILEFV  214 (222)
T ss_dssp             EEEEEEE
T ss_pred             cEEehhh
Confidence            9999853

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=88.96  E-value=2  Score=33.82  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcHHH--------------HHHHHHHHHHHhcc-CCceeeeeecccccceEEEEEEe
Q 022110          169 AVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRESM-WSSVNWELIEPIIKMRTLRARLI  233 (302)
Q Consensus       169 Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~--------------y~~l~~~Ik~R~~~-g~tv~W~~ve~le~~rvv~arli  233 (302)
                      .+++...-.+++.+||.+.|+...+|++              .+++.. +...+.. +...         ..+++.   +
T Consensus        11 I~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~~---------~~~i~~---I   77 (120)
T 3fka_A           11 LTALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIA-MCEDAADAETDP---------FWAISS---V   77 (120)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCCC---------CEEEEE---E
T ss_pred             HHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCCc---------eEEEEE---E
Confidence            3444556677889999999999999887              456666 6532211 1110         111222   2


Q ss_pred             eeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110          234 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  300 (302)
Q Consensus       234 ~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  300 (302)
                      +|     .++.|.+.|.+.       +       .     ...++|+.+|.|.    ++.|+|..|+
T Consensus        78 ~i-----~gd~A~a~v~~~-------~-------~-----~~~f~D~~~L~k~----dg~WkIv~K~  116 (120)
T 3fka_A           78 SV-----QGDIAMLHVEND-------W-------A-----GMRFDDFLTVLLH----EGSWRIVSKV  116 (120)
T ss_dssp             EE-----ETTEEEEEEEEE-------E-------T-----TEEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EE-----ECCEEEEEEEEE-------c-------C-----CCceEEEEEEEEe----CCEEEEEEEE
Confidence            22     245666666631       1       1     2468999999999    7999999987

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=85.74  E-value=10  Score=29.89  Aligned_cols=92  Identities=11%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhcHHH---------------HHHHHHHHHHHhccCCceeeeeecccccceEEEEEEe
Q 022110          169 AVDLYKEINTLMANGDKTSLRKAVTEKM---------------YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI  233 (302)
Q Consensus       169 Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~---------------y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli  233 (302)
                      .++......+++.+||.+.|+...+|++               ++++...+..+.+. ...              +.++.
T Consensus        14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~~p~-~~~--------------~~~I~   78 (125)
T 3duk_A           14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSNGPA-KNV--------------QSRIT   78 (125)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHHCCC-TTC--------------EEEEE
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhccCCC-Ccc--------------cceEE
Confidence            4555667778889999999999998887               24555555544111 110              11222


Q ss_pred             eeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110          234 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  300 (302)
Q Consensus       234 ~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki  300 (302)
                      .|+   +.++.+.+.|++.  .           ..|     ..++||.+|.|.    ++.|+|..|+
T Consensus        79 ~I~---i~gd~A~a~v~~~--~-----------~~~-----~~f~D~l~L~k~----dg~WkIv~K~  120 (125)
T 3duk_A           79 NID---IVGTVAHARVEAE--N-----------WTN-----FKFSDLFLLLKL----DGKWTIVNKV  120 (125)
T ss_dssp             EEE---EETTEEEEEEEEE--C-----------SSS-----CCEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEE---EECCEEEEEEEEE--E-----------cCC-----CeEEEEEEEEEe----CCEEEEEEEE
Confidence            221   1245666655442  0           011     357999999999    7999999987

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=85.37  E-value=8.8  Score=29.83  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEKMY  197 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y  197 (302)
                      ..+++......|+.++|.+.|+.+.+|++.
T Consensus        13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~   42 (128)
T 3blz_A           13 AIVEVLSKYNEGGKKADSTIMRPAFSSQAT   42 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhhCCCcE
Confidence            445667788899999999999999988854

>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}

Probab=81.96  E-value=11  Score=30.27  Aligned_cols=28  Identities=0%  Similarity=-0.086  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEK  195 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~  195 (302)
                      .++++.....+||.+||.+.|..+.+++
T Consensus         9 ~~~~~~~af~~A~~~gD~da~~al~a~d   36 (144)
T 3gwr_A            9 TPEAAEDAFYAAFEARSLDDMMAVWARD   36 (144)
T ss_dssp             SHHHHHHHHHHHHHHTCHHHHHHHBCSS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHhhccCC
Confidence            4567777889999999999999888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d2cw9a1	182	d.17.4.13 (A:270-451) Translocase of inner mitocho	5e-21
d2fxta1	192	d.17.4.13 (A:234-425) Translocase of inner mitocho	2e-18

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (212), Expect = 5e-21
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 147 KSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKMYSALKNE 203
           + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  YS L + 
Sbjct: 26  EMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHP 85

Query: 204 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 263
           I+Q +++    +  +++            + +    + +    L + F A+      + K
Sbjct: 86  IQQAKALGLQFHSRILDIDN---------VDLAMGKMVEQGPVLIITFQAQLVMVVRNPK 136

Query: 264 GVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRLCG 298
           G  V GD  K + +  +W   +     +P A WRL  
Sbjct: 137 GEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLD 173

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.6 bits (196), Expect = 2e-18
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 145 ELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALK 201
           E +S+   ++ +     +S + F     +    EI      GD   L+K  +E  ++   
Sbjct: 34  ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYA 93

Query: 202 NEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 261
            + K  +      +  +++ I  +  + A+L+             L +   A++      
Sbjct: 94  AQQKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQD------IPVLVVGCRAQEINLYRK 146

Query: 262 SK-GVTVAGDKTKEVLVRDIWVFEKSLF----HPGAYWRL 296
            K G   AGD+   ++     VF +            W++
Sbjct: 147 KKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d2cw9a1	182	Translocase of inner mitochondrial membrane TIMM44	99.98
d2fxta1	192	Translocase of inner mitochondrial membrane TIMM44	99.96
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	87.64
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	87.28
d3d9ra1	132	Uncharacterized protein ECA1476 {Pectobacterium at	86.39
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	84.19

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=233.82  Aligned_cols=150  Identities=18%  Similarity=0.292  Sum_probs=131.0

Q ss_pred             HHHHHhHHHHHHHHHh--CCCChHHHHHHHHH-HHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeee
Q 022110          142 IILELKSAYAIAKLRK--SGYSKQKFYTEAVD-LYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  218 (302)
Q Consensus       142 l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~-iy~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~  218 (302)
                      +..+.+.+.+|++|++  |+|+.+.|+.+|+. +|++|++||++||.+.|++|||+++|+.|..+|++|+.+|.++.+++
T Consensus        21 ~~~~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD~~~L~~llt~~~~~~f~~~i~~r~~~g~~~~~~~  100 (182)
T d2cw9a1          21 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI  100 (182)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEE
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHhhHHHHHHHHHHHHHHHHCCCeeeeee
Confidence            4566777889999998  99999999999985 89999999999999999999999999999999999999988766554


Q ss_pred             ecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCC--CCCCeEE
Q 022110          219 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFH--PGAYWRL  296 (302)
Q Consensus       219 ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~--~~~~WrL  296 (302)
                               +.++.++|...++.+..+++||+|+++|+.++||++|++|+|+++.++++.|+|+|+|++..  |+++|+|
T Consensus       101 ---------i~i~~~ei~~a~~~~~~~~itV~F~~~qi~~~~D~~G~iveG~~d~i~~v~e~W~F~R~~~s~~Pn~~W~L  171 (182)
T d2cw9a1         101 ---------LDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL  171 (182)
T ss_dssp             ---------EEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEE
T ss_pred             ---------cccccceeEEEEeeCCceEEEEEEEEEehhheecCCCCEecCCCCCceEEEEEEEEEEcCcCCCCCCCEEE
Confidence                     44444444444445788999999999999999999999999999999999999999999975  4566999


Q ss_pred             EEEe
Q 022110          297 CGRI  300 (302)
Q Consensus       297 ~gki  300 (302)
                      .++-
T Consensus       172 ~~iq  175 (182)
T d2cw9a1         172 LDIS  175 (182)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9863

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-29  Score=222.85  Aligned_cols=150  Identities=16%  Similarity=0.196  Sum_probs=130.3

Q ss_pred             HHHhHHHHHHHHHh--CCCChHHHHHHHHHHHH-HHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeec
Q 022110          144 LELKSAYAIAKLRK--SGYSKQKFYTEAVDLYK-EINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE  220 (302)
Q Consensus       144 ~~~ks~~al~kir~--p~F~~~~F~~~Ak~iy~-~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve  220 (302)
                      .+...+.+|++|++  |+|+..+|+.+|+++|. +|++||++||++.|++||++++|+.|.+.|++|+.+|.++.++++.
T Consensus        33 ~ete~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~ii~  112 (192)
T d2fxta1          33 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILD  112 (192)
T ss_dssp             CCCCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEECC
T ss_pred             ccCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhHHHHHHHHHHHHHHHHcCCeeeEEEec
Confidence            34556788999998  99999999999999986 9999999999999999999999999999999999999998888863


Q ss_pred             ccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcC-CCceecCCCCCeeeeeEEEEEEEeCCCCC----CCeE
Q 022110          221 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS-KGVTVAGDKTKEVLVRDIWVFEKSLFHPG----AYWR  295 (302)
Q Consensus       221 ~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~-~GrlV~G~~d~~~dV~EyWVFeR~l~~~~----~~Wr  295 (302)
                       +..+.++++++..      .+.++++||+|+++|+.+++|. +|++|+|+++.+..|.|+|+|+|++...+    +.|+
T Consensus       113 -I~~~~I~~a~~~~------~~~~~~itV~F~t~qi~~~~d~k~G~IieGd~d~i~~v~d~WtF~R~~~~~~pn~~~~W~  185 (192)
T d2fxta1         113 -IRGVEIVSAKLLA------PQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWK  185 (192)
T ss_dssp             -CEEEEEEEEEEET------TTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCE
T ss_pred             -cceeEEEEEEEec------CCCeEEEEEEEEEEEEEEEEecCCCcEecCCCCccEEEEEEEEEEEcCccCCCCCCCCEE
Confidence             4555555555321      3579999999999999999985 69999999999999999999999998544    4599


Q ss_pred             EEEEe
Q 022110          296 LCGRI  300 (302)
Q Consensus       296 L~gki  300 (302)
                      |....
T Consensus       186 LiE~~  190 (192)
T d2fxta1         186 ILEFV  190 (192)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            98754

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.64  E-value=2  Score=30.60  Aligned_cols=29  Identities=14%  Similarity=0.365  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEKM  196 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~  196 (302)
                      .+.++.+..++|+.+||.+.+..|++|++
T Consensus         4 a~~~v~~~~~~A~~~~D~~~~~~l~a~D~   32 (121)
T d3bb9a1           4 AAGNVVKQFHAALQMGNEAIVRQSLAANV   32 (121)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhCCCe
Confidence            35778899999999999999999998873

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=87.28  E-value=2.7  Score=29.99  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEKM  196 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~  196 (302)
                      +-.++...+.+|+.++|.+.|..+++|++
T Consensus         6 ~I~~~~~~~~~A~~~~D~~~l~~l~~~d~   34 (122)
T d2r4ia1           6 VILDCEKKLLTAIQNNDVESLEVLLHDDL   34 (122)
T ss_dssp             HHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHhhhcccE
Confidence            44577889999999999999999999875

>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: ECA1476-like
domain: Uncharacterized protein ECA1476
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=86.39  E-value=4.4  Score=29.13  Aligned_cols=28  Identities=11%  Similarity=-0.030  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhcHH
Q 022110          168 EAVDLYKEINTLMANGDKTSLRKAVTEK  195 (302)
Q Consensus       168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~  195 (302)
                      ..+++...-.+||++||.+.+-.+.|++
T Consensus         9 aI~~~~~~y~~A~~~~D~~~~~~l~t~D   36 (132)
T d3d9ra1           9 VIEAAAIAYLTAFNRADIPAVIATYTDD   36 (132)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhcCCC
Confidence            4466778889999999999999998876

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=84.19  E-value=4.4  Score=29.40  Aligned_cols=30  Identities=17%  Similarity=0.193  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110          167 TEAVDLYKEINTLMANGDKTSLRKAVTEKM  196 (302)
Q Consensus       167 ~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~  196 (302)
                      ++.++++....+||+++|.+.+-.+.++++
T Consensus         3 ~~I~~l~~~~~~A~~~~D~d~~~~l~~~Da   32 (128)
T d2gxfa1           3 QQLKDIISACDLAIQNEDFDTLMNYYSEDA   32 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhccCC
Confidence            355788999999999999999999988764