Citrus Sinensis ID: 022112
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SYM5 | 669 | Probable rhamnose biosynt | no | no | 0.953 | 0.430 | 0.830 | 1e-143 | |
| Q9LH76 | 664 | Probable rhamnose biosynt | no | no | 0.970 | 0.441 | 0.795 | 1e-132 | |
| Q9LPG6 | 667 | Probable rhamnose biosynt | no | no | 0.980 | 0.443 | 0.790 | 1e-132 | |
| Q5UPS5 | 289 | Uncharacterized protein L | N/A | no | 0.920 | 0.961 | 0.403 | 1e-56 | |
| P29781 | 304 | dTDP-4-dehydrorhamnose re | yes | no | 0.543 | 0.539 | 0.269 | 0.0001 |
| >sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 260/289 (89%), Gaps = 1/289 (0%)
Query: 12 SKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAA 70
KP LKFLIYG+TGWIGGLLGK+C Q I + YG GRLE+R+SL DI +VKPTHVFN+A
Sbjct: 381 QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSA 440
Query: 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSG 130
GVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD HP GSG
Sbjct: 441 GVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSG 500
Query: 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYE 190
IGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY
Sbjct: 501 IGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYN 560
Query: 191 KVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN 250
KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYR YI+P F W N
Sbjct: 561 KVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWAN 620
Query: 251 FTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
FTLEEQAKVIVAPRSNNE+DASKLK EFPELLSIKESLIKY + PNKKT
Sbjct: 621 FTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669
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Probably involved in the synthesis of pectinaceous rhamnogalacturonan I. Arabidopsis thaliana (taxid: 3702) EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/293 (79%), Positives = 261/293 (89%)
Query: 7 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHV 66
G + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HV
Sbjct: 372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHV 431
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
FNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD+ HP
Sbjct: 432 FNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHP 491
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI
Sbjct: 492 EGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKI 551
Query: 187 TRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNF 246
+RY KVVNIPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI+P+F
Sbjct: 552 SRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDF 611
Query: 247 TWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
W NF LEEQAKVIVAPRSNNE+D +KL EFPE+LSIK+SLIKYVFEPNK+T
Sbjct: 612 KWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664
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Probably involved in the synthesis of pectinaceous rhamnogalacturonan I. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/296 (79%), Positives = 261/296 (88%)
Query: 4 PANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKP 63
P NG LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP
Sbjct: 372 PKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKP 431
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123
THVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD+
Sbjct: 432 THVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDA 491
Query: 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFI 183
HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFI
Sbjct: 492 THPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFI 551
Query: 184 TKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243
TKI+RY KVV+IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI+
Sbjct: 552 TKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIE 611
Query: 244 PNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
P F W NFT+EEQAKVIVA RSNNE+D SKL EFPE+LSIKESL+KYVFEPNK+T
Sbjct: 612 PGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667
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Involved in the synthesis of pectinaceous rhamnogalacturonan I, the major component of Arabidopsis mucilage. Required for the normal seed coat epidermal development. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 174/290 (60%), Gaps = 12/290 (4%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTG 74
+K+LI+G GWIG ++ K+ + Q R ++ +++E +I+ +KP V + G T
Sbjct: 1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60
Query: 75 RP---NVDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGS 129
P +D+ E VE ++ N+ G L LA +C+ + L TGCIFE +
Sbjct: 61 GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADE 120
Query: 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITR 188
GF E D PNF GS YS K + L+ F+N V LR+RMPI+ + NPR+FITKI
Sbjct: 121 K-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILS 178
Query: 189 YEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW 248
Y ++ +IPNSMTILD+++P+ I+MA+ TG +NFTNPG+VSHNEIL + R PN TW
Sbjct: 179 YSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTW 238
Query: 249 KNFTLEEQAKVIVAPRSNNELDASKLKTEFPE----LLSIKESLIKYVFE 294
+N + E+Q ++ A RSNN L+ KL++ +P+ L I+E + K F+
Sbjct: 239 ENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288
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Acanthamoeba polyphaga (taxid: 5757) |
| >sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT-YGSGRLE--NRASLEADIAAVKPTHVFNAAGV 72
++L+ G +G +G L L + T G G L+ + A++ + +A +P V N A
Sbjct: 8 RWLVTGASGMLGRELTPLLDRRGAAVTALGRGHLDITDGAAVRSAVAEHRPAVVVNCAAW 67
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T VD ES + N G LA CR G +L+ +T +F G P
Sbjct: 68 TA---VDEAESEPALAMAVNGEGPRHLAQACRAVGAVLLQLSTDYVFPGSGGRPY----- 119
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYE 190
ED P + Y TK E + VR P NF+ K+ R E
Sbjct: 120 --REDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAWLYGAGGP-NFVAKMIRLE 174
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Involved in the biosynthesis of the streptose moiety of streptomycin. Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well. Streptomyces griseus (taxid: 1911) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | ||||||
| 225426743 | 302 | PREDICTED: probable rhamnose biosyntheti | 1.0 | 1.0 | 0.897 | 1e-163 | |
| 211906440 | 300 | UDP-L-rhamnose synthase [Gossypium hirsu | 0.993 | 1.0 | 0.910 | 1e-161 | |
| 283488485 | 300 | UDP-L-rhamnose synthase [Gossypium hirsu | 0.993 | 1.0 | 0.903 | 1e-160 | |
| 224071686 | 302 | predicted protein [Populus trichocarpa] | 0.996 | 0.996 | 0.893 | 1e-159 | |
| 255537241 | 302 | NAD dependent epimerase/dehydratase, put | 1.0 | 1.0 | 0.870 | 1e-157 | |
| 224058615 | 302 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.877 | 1e-157 | |
| 356563232 | 302 | PREDICTED: probable rhamnose biosyntheti | 0.983 | 0.983 | 0.889 | 1e-156 | |
| 449452382 | 300 | PREDICTED: probable rhamnose biosyntheti | 0.966 | 0.973 | 0.897 | 1e-155 | |
| 297840207 | 300 | hypothetical protein ARALYDRAFT_893174 [ | 0.966 | 0.973 | 0.881 | 1e-153 | |
| 21593701 | 300 | unknown [Arabidopsis thaliana] | 0.966 | 0.973 | 0.874 | 1e-152 |
| >gi|225426743|ref|XP_002282339.1| PREDICTED: probable rhamnose biosynthetic enzyme 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust.
Identities = 271/302 (89%), Positives = 290/302 (96%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGFPANG+ A + LKFLIYGRTGWIGGLLGKLC+AQ ++++YGSGRLENRASLEAD+A+
Sbjct: 1 MGFPANGAAASDRKLKFLIYGRTGWIGGLLGKLCEAQGLEYSYGSGRLENRASLEADLAS 60
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNV GTLTLADVCR+KGL+LINYATGCIFE
Sbjct: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADVCREKGLVLINYATGCIFE 120
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YD+ HPLGSG+GFKEEDTPNF+GSFYSKTKAMVE+LLKN+ENVCTLRVRMPISSDLSNPR
Sbjct: 121 YDANHPLGSGVGFKEEDTPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPR 180
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYR
Sbjct: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRD 240
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
YIDPNF WKNFTLEEQAKVIVAPRSNNELDASKLK EFPEL+SIKESLIKYVF+PN+K T
Sbjct: 241 YIDPNFAWKNFTLEEQAKVIVAPRSNNELDASKLKKEFPELMSIKESLIKYVFKPNQKAT 300
Query: 301 GV 302
G
Sbjct: 301 GA 302
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|211906440|gb|ACJ11713.1| UDP-L-rhamnose synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 275/302 (91%), Positives = 286/302 (94%), Gaps = 2/302 (0%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGFPANGS KPLKFLIYGRTGWIGGLLGKLC++Q ID+ YGSGRLENR SLE+DIA
Sbjct: 1 MGFPANGSS--DKPLKFLIYGRTGWIGGLLGKLCESQGIDYEYGSGRLENRISLESDIAN 58
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE
Sbjct: 59 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 118
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YD H +G+GIGFKEEDTPNF+GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDL+NPR
Sbjct: 119 YDEAHQIGTGIGFKEEDTPNFIGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLANPR 178
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRY+KVVNIPNSMTILDELLPISIEM KRNLTGIWNFTNPGVVSHNEILEMYR
Sbjct: 179 NFITKITRYDKVVNIPNSMTILDELLPISIEMGKRNLTGIWNFTNPGVVSHNEILEMYRD 238
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
YIDPNFTWKNF LEEQAKVIVAPRSNNELDA+KLKTEFPELLSIKESLIKYVFEPNKKT
Sbjct: 239 YIDPNFTWKNFNLEEQAKVIVAPRSNNELDATKLKTEFPELLSIKESLIKYVFEPNKKTG 298
Query: 301 GV 302
G
Sbjct: 299 GA 300
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488485|gb|ADB24764.1| UDP-L-rhamnose synthase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/302 (90%), Positives = 285/302 (94%), Gaps = 2/302 (0%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGFPANGS KPLKFLIYGRTGWIGGLLGKLC++Q ID+ YGSGRLE+R SLE+DIA
Sbjct: 1 MGFPANGSS--DKPLKFLIYGRTGWIGGLLGKLCESQGIDYEYGSGRLESRISLESDIAN 58
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE
Sbjct: 59 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 118
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YD H +G+GIGFKEEDTPNF GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDL+NPR
Sbjct: 119 YDEAHQIGTGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLANPR 178
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRY+KVVNIPNSMTILDELLPISIEM KRNLTGIWNFTNPGVVSHNEILEMYR
Sbjct: 179 NFITKITRYDKVVNIPNSMTILDELLPISIEMGKRNLTGIWNFTNPGVVSHNEILEMYRD 238
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
YIDPNFTWKNF LEEQAKVIVAPRSNNELDA+KLKTEFPELLSIKESL+KYVFEPNKKT
Sbjct: 239 YIDPNFTWKNFNLEEQAKVIVAPRSNNELDATKLKTEFPELLSIKESLVKYVFEPNKKTG 298
Query: 301 GV 302
G
Sbjct: 299 GA 300
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224071686|ref|XP_002303557.1| predicted protein [Populus trichocarpa] gi|118484773|gb|ABK94255.1| unknown [Populus trichocarpa] gi|222840989|gb|EEE78536.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/301 (89%), Positives = 283/301 (94%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGF + A +KPLKFLIYGRTGWIGGLLGKLCQ+Q IDFTYGSGRLENR SLEAD+AA
Sbjct: 1 MGFETSNGTASTKPLKFLIYGRTGWIGGLLGKLCQSQGIDFTYGSGRLENRPSLEADVAA 60
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
V PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR+KGL+LINYATGCIFE
Sbjct: 61 VNPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCREKGLVLINYATGCIFE 120
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YDS HPLGSGIGFKEEDTPNF+GSFYSKTKAMVE+LL+N+ENVCTLRVRMPIS DL+NPR
Sbjct: 121 YDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISCDLANPR 180
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR
Sbjct: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRD 240
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
YIDP FTWKNFTLEEQAKVIVAPRSNNELD KLK EFPELL IKESLIKYVF+PN+KTT
Sbjct: 241 YIDPKFTWKNFTLEEQAKVIVAPRSNNELDTVKLKQEFPELLPIKESLIKYVFKPNQKTT 300
Query: 301 G 301
Sbjct: 301 A 301
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537241|ref|XP_002509687.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis] gi|223549586|gb|EEF51074.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/302 (87%), Positives = 282/302 (93%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGF +NG+ KP KFLIYGRTGWIGGLLGKLC++Q ID+TYG+GRLENR SLE DIA+
Sbjct: 1 MGFQSNGATDNKKPYKFLIYGRTGWIGGLLGKLCESQGIDYTYGNGRLENRVSLENDIAS 60
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
+ PTHVFNAAGVTGRPNVDWCESHKVETIRTNV GTLTLADVCR+KGL+LINYATGCIFE
Sbjct: 61 INPTHVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADVCREKGLVLINYATGCIFE 120
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YD HPLGSGIGFKEEDTPNF+GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDL+NPR
Sbjct: 121 YDDKHPLGSGIGFKEEDTPNFIGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLANPR 180
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRYEKVV+IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYR
Sbjct: 181 NFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRD 240
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
Y+DPNFTWKNFTLEEQAKVIVAPRSNNELDA+KL EFPE+L IKESLIKYVF+PN+KT
Sbjct: 241 YVDPNFTWKNFTLEEQAKVIVAPRSNNELDATKLSKEFPEMLPIKESLIKYVFKPNQKTA 300
Query: 301 GV 302
Sbjct: 301 AA 302
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058615|ref|XP_002299567.1| predicted protein [Populus trichocarpa] gi|118484571|gb|ABK94159.1| unknown [Populus trichocarpa] gi|222846825|gb|EEE84372.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust.
Identities = 265/302 (87%), Positives = 283/302 (93%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGF ++ A K LKFLIYGRTGWIGGLLGKLCQ+Q IDFTYGSGRLENR SLEAD+ A
Sbjct: 1 MGFESSNGTASPKLLKFLIYGRTGWIGGLLGKLCQSQGIDFTYGSGRLENRPSLEADLVA 60
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
V PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLAD+CR+KGL+LINYATGCIFE
Sbjct: 61 VNPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADLCREKGLVLINYATGCIFE 120
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YDS HPLGSGIGFKEEDTPNF+GSFYSKTKAMVE+LL+N+ENVCTLRVRMPISSDL+NPR
Sbjct: 121 YDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISSDLANPR 180
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRYEKVV+IPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR
Sbjct: 181 NFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRD 240
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTT 300
YIDP+FTWKNFTLEEQAKVIVAPRSNNELD +KLK EFPELL IKESLIKYVF+PN+KT
Sbjct: 241 YIDPDFTWKNFTLEEQAKVIVAPRSNNELDTAKLKQEFPELLPIKESLIKYVFKPNQKTA 300
Query: 301 GV 302
Sbjct: 301 AA 302
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563232|ref|XP_003549868.1| PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 265/298 (88%), Positives = 280/298 (93%), Gaps = 1/298 (0%)
Query: 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA 60
MGFPANG+ A ++PL FLIYGRTGWIGGLLG LC+AQ I F YGSGRLENRASLE DIA
Sbjct: 1 MGFPANGASA-AQPLNFLIYGRTGWIGGLLGSLCRAQGISFHYGSGRLENRASLETDIAL 59
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120
+KP+HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD GLILINYATGCIFE
Sbjct: 60 LKPSHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDHGLILINYATGCIFE 119
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR 180
YDS HPLGSGIGFKE D+PNF GSFYSKTKAMVE+LLKN++NVCTLRVRMPISSDL NPR
Sbjct: 120 YDSDHPLGSGIGFKETDSPNFTGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLLNPR 179
Query: 181 NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQ 240
NFITKITRYEKVV+IPNSMTILDELLPISIEM KRNLTGIWNFTNPGVVSHNEILEMYR
Sbjct: 180 NFITKITRYEKVVDIPNSMTILDELLPISIEMGKRNLTGIWNFTNPGVVSHNEILEMYRD 239
Query: 241 YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKK 298
Y+DPNFTW NFTLEEQAKVIVAPRSNNELDA+KLK EFPELLSIK+SLIKYVFEPN+K
Sbjct: 240 YVDPNFTWNNFTLEEQAKVIVAPRSNNELDAAKLKKEFPELLSIKDSLIKYVFEPNQK 297
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452382|ref|XP_004143938.1| PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Cucumis sativus] gi|449495871|ref|XP_004159969.1| PREDICTED: probable rhamnose biosynthetic enzyme 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 282/293 (96%), Gaps = 1/293 (0%)
Query: 8 SDAGS-KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHV 66
+D+GS LKFLIYGRTGWIGGLLG LCQ Q IDFTYGSGRLENRASLEADIAAV PTHV
Sbjct: 5 ADSGSVSTLKFLIYGRTGWIGGLLGHLCQKQGIDFTYGSGRLENRASLEADIAAVNPTHV 64
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
FNAAGVTGRPNVDWCESHKVETIRTNVVGTL+LADVCR++GLILINYATGCIFEYDS HP
Sbjct: 65 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLSLADVCRERGLILINYATGCIFEYDSAHP 124
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
+ SGIGFKE++ PNF+GSFYSKTKAMVE+LLKN+ENVCTLRVRMPISSDLSNPRNFITKI
Sbjct: 125 INSGIGFKEDEIPNFIGSFYSKTKAMVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKI 184
Query: 187 TRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNF 246
TRYEKVV+IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMY+Q+IDPNF
Sbjct: 185 TRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNF 244
Query: 247 TWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
TWKNFTL+EQAKVIVAPRSNNELDA+KLK EFPELLSIK+SLIKYVF+PN+KT
Sbjct: 245 TWKNFTLDEQAKVIVAPRSNNELDATKLKNEFPELLSIKDSLIKYVFKPNQKT 297
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297840207|ref|XP_002887985.1| hypothetical protein ARALYDRAFT_893174 [Arabidopsis lyrata subsp. lyrata] gi|297333826|gb|EFH64244.1| hypothetical protein ARALYDRAFT_893174 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/295 (88%), Positives = 279/295 (94%), Gaps = 3/295 (1%)
Query: 5 ANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPT 64
ANGS S FLIYGRTGWIGGLLGKLC++Q I +TYGSGRL++R S+ ADI +VKP+
Sbjct: 5 ANGS---STSFNFLIYGRTGWIGGLLGKLCESQGISYTYGSGRLQDRQSIIADIESVKPS 61
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFNAAGVTGRPNVDWCESHKVETIRTNV GTLTLAD+CR+KGL+LINYATGCIFEYDSG
Sbjct: 62 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 121
Query: 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIT 184
HPLGSGIGFKEEDTPNF GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDL+NPRNFIT
Sbjct: 122 HPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFIT 181
Query: 185 KITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDP 244
KI RYEKVV+IPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR YIDP
Sbjct: 182 KIARYEKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDP 241
Query: 245 NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
+FTWKNFTLEEQAKVIVAPRSNNELDA+KLKTEFPEL+SIKESLIK+VFEPNKKT
Sbjct: 242 SFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKKT 296
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21593701|gb|AAM65668.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/295 (87%), Positives = 278/295 (94%), Gaps = 3/295 (1%)
Query: 5 ANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPT 64
ANGS S FLIYG+TGWIGGLLGKLC++Q I +TYGSGRL++R S+ ADI +VKP+
Sbjct: 5 ANGS---SSSFNFLIYGKTGWIGGLLGKLCESQGISYTYGSGRLQDRQSIVADIESVKPS 61
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFNAAGVTGRPNVDWCESHKVETIRTNV GTLTLAD+CR+KGL+LINYATGCIFEYDSG
Sbjct: 62 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 121
Query: 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIT 184
HPLGSGIGFKEEDTPNF GSFYSKTKAMVEELLKN+ENVCT RVRMPISSDL+NPRNFIT
Sbjct: 122 HPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTXRVRMPISSDLTNPRNFIT 181
Query: 185 KITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDP 244
KI RYEKVV+IPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR YIDP
Sbjct: 182 KIARYEKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDP 241
Query: 245 NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
+FTWKNFTLEEQAKVIVAPRSNNELDA+KLKTEFPEL+SIKESLIK+VFEPNKKT
Sbjct: 242 SFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKKT 296
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 302 | ||||||
| TAIR|locus:2015489 | 301 | NRS/ER "nucleotide-rhamnose sy | 0.970 | 0.973 | 0.881 | 2.1e-141 | |
| TAIR|locus:2202960 | 669 | RHM1 "rhamnose biosynthesis 1" | 0.970 | 0.437 | 0.817 | 5e-131 | |
| TAIR|locus:2024902 | 667 | MUM4 "MUCILAGE-MODIFIED 4" [Ar | 0.976 | 0.442 | 0.797 | 5.7e-130 | |
| TAIR|locus:2099372 | 664 | RHM3 "rhamnose biosynthesis 3" | 0.980 | 0.445 | 0.791 | 9.3e-130 | |
| UNIPROTKB|G4MPV2 | 292 | MGG_09238 "Uncharacterized pro | 0.940 | 0.972 | 0.517 | 1.9e-76 | |
| DICTYBASE|DDB_G0274991 | 172 | DDB_G0274991 "NAD-dependent ep | 0.559 | 0.982 | 0.555 | 2.3e-46 | |
| WB|WBGene00015298 | 631 | C01F1.3 [Caenorhabditis elegan | 0.903 | 0.432 | 0.320 | 2.9e-33 | |
| TIGR_CMR|GSU_2365 | 280 | GSU_2365 "dTDP-4-dehydrorhamno | 0.658 | 0.710 | 0.276 | 0.00015 | |
| UNIPROTKB|P29781 | 304 | strL "dTDP-4-dehydrorhamnose r | 0.817 | 0.812 | 0.259 | 0.00018 |
| TAIR|locus:2015489 NRS/ER "nucleotide-rhamnose synthase/epimerase-reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
Identities = 260/295 (88%), Positives = 280/295 (94%)
Query: 5 ANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPT 64
ANGS + S FLIYG+TGWIGGLLGKLC+AQ I +TYGSGRL++R S+ ADI +VKP+
Sbjct: 5 ANGSSSSS--FNFLIYGKTGWIGGLLGKLCEAQGITYTYGSGRLQDRQSIVADIESVKPS 62
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFNAAGVTGRPNVDWCESHKVETIRTNV GTLTLAD+CR+KGL+LINYATGCIFEYDSG
Sbjct: 63 HVFNAAGVTGRPNVDWCESHKVETIRTNVAGTLTLADICREKGLVLINYATGCIFEYDSG 122
Query: 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFIT 184
HPLGSGIGFKEEDTPNF GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDL+NPRNFIT
Sbjct: 123 HPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLTNPRNFIT 182
Query: 185 KITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDP 244
KI RYEKVV+IPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR YIDP
Sbjct: 183 KIARYEKVVDIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDP 242
Query: 245 NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
+FTWKNFTLEEQAKVIVAPRSNNELDA+KLKTEFPEL+SIKESLIK+VFEPNKKT
Sbjct: 243 SFTWKNFTLEEQAKVIVAPRSNNELDATKLKTEFPELMSIKESLIKFVFEPNKKT 297
|
|
| TAIR|locus:2202960 RHM1 "rhamnose biosynthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 242/296 (81%), Positives = 264/296 (89%)
Query: 5 ANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKP 63
+NG+ KP LKFLIYG+TGWIGGLLGK+C Q I + YG GRLE+R+SL DI +VKP
Sbjct: 376 SNGTP--QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKP 433
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123
THVFN+AGVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD
Sbjct: 434 THVFNSAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDD 493
Query: 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFI 183
HP GSGIGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFI
Sbjct: 494 KHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFI 553
Query: 184 TKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243
TKI+RY KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYR YI+
Sbjct: 554 TKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYIN 613
Query: 244 PNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
P F W NFTLEEQAKVIVAPRSNNE+DASKLK EFPELLSIKESLIKY + PNKKT
Sbjct: 614 PEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669
|
|
| TAIR|locus:2024902 MUM4 "MUCILAGE-MODIFIED 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 237/297 (79%), Positives = 265/297 (89%)
Query: 4 PANGSDAGSKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVK 62
P NG D+G K LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++K
Sbjct: 372 PKNG-DSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIK 430
Query: 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYD 122
PTHVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD
Sbjct: 431 PTHVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYD 490
Query: 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNF 182
+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNF
Sbjct: 491 ATHPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNF 550
Query: 183 ITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYI 242
ITKI+RY KVV+IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI
Sbjct: 551 ITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYI 610
Query: 243 DPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
+P F W NFT+EEQAKVIVA RSNNE+D SKL EFPE+LSIKESL+KYVFEPNK+T
Sbjct: 611 EPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667
|
|
| TAIR|locus:2099372 RHM3 "rhamnose biosynthesis 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 235/297 (79%), Positives = 263/297 (88%)
Query: 4 PANGSDAGSK-PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVK 62
P +G K LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++K
Sbjct: 368 PTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIK 427
Query: 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYD 122
P+HVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD
Sbjct: 428 PSHVFNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYD 487
Query: 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNF 182
+ HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNF
Sbjct: 488 AAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNF 547
Query: 183 ITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYI 242
ITKI+RY KVVNIPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI
Sbjct: 548 ITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYI 607
Query: 243 DPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
+P+F W NF LEEQAKVIVAPRSNNE+D +KL EFPE+LSIK+SLIKYVFEPNK+T
Sbjct: 608 EPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664
|
|
| UNIPROTKB|G4MPV2 MGG_09238 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 150/290 (51%), Positives = 201/290 (69%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75
+FLI+G GW+ G L + ++Q D + R+ENR + A++ VKPTHV N AG TGR
Sbjct: 5 RFLIWGGEGWVAGHLASILKSQGKDVYTTTVRMENREGVLAELEKVKPTHVLNCAGCTGR 64
Query: 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKE 135
PNVDWCE +K T+R+NV+GTL L D C KG+ +ATGCI++YD HP G GF E
Sbjct: 65 PNVDWCEDNKEATMRSNVIGTLNLTDACFQKGIHCTVFATGCIYQYDDAHPW-DGPGFLE 123
Query: 136 EDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNI 195
D NF GSFYS+TKA VEE++K + N LR+RMP+S DL +PRNF+TKI +Y++VV+I
Sbjct: 124 TDKANFAGSFYSETKAHVEEVMKYYNNCLILRLRMPVSDDL-HPRNFVTKIAKYDRVVDI 182
Query: 196 PNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEE 255
PNS TIL +LLP+S+ MA+ TG++NFTNPG +SHNE+L ++R + P+F W+NF+LEE
Sbjct: 183 PNSNTILHDLLPLSLAMAEHKDTGVYNFTNPGAISHNEVLTLFRDIVRPSFKWQNFSLEE 242
Query: 256 QAKVIVAPRSNNELDASKLKTEFPEL-LSIKE--SLIKYVFEPNKKTTGV 302
QAKVI A RSN +LD +KL + E + + E + FE KK GV
Sbjct: 243 QAKVIKAGRSNCKLDTTKLTEKAKEYGIEVPEIHEAYRQCFERMKKA-GV 291
|
|
| DICTYBASE|DDB_G0274991 DDB_G0274991 "NAD-dependent epimerase/dehydratase family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 95/171 (55%), Positives = 132/171 (77%)
Query: 129 SGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-NVCTLRVRMPISSDLSNPRNFITKIT 187
SGIGFKEE+ N+ S YS TK MVE+L K++E N TLR+RMPIS +L+ PRNFITKI
Sbjct: 3 SGIGFKEEEEFNYFESHYSVTKQMVEKLTKHYESNTLTLRLRMPISENLNEPRNFITKII 62
Query: 188 RYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFT 247
YE+VVNIPNS T+L +LLPI+I+M+ + + G++NF NPGV+SHNEIL++Y I+PNF
Sbjct: 63 NYERVVNIPNSCTVLPDLLPIAIDMSIKQIKGVYNFVNPGVISHNEILDLYTLLINPNFK 122
Query: 248 WKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKK 298
++NFT EQ+K++ RSNN LD +KL++ +P + +IK+S I+ +F +KK
Sbjct: 123 YQNFTEIEQSKILKCGRSNNHLDTTKLESLYPTIPNIKKS-IENIFLNSKK 172
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| WB|WBGene00015298 C01F1.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 2.9e-33, P = 2.9e-33
Identities = 93/290 (32%), Positives = 155/290 (53%)
Query: 19 IYGRTGWIGGLLGKLCQAQSIDFTYGSGRL--ENRASLEADIAAVKPTHVFNAAGVTGRP 76
IYG G++G L + + I + + ++ ++ +E ++A + THV G T P
Sbjct: 339 IYGGKGYVGQELQHVLNDRHIPYVLATKKVGFDSDEEVERELALLGVTHVICVTGRTHGP 398
Query: 77 N---VDWCESH--KVE-TIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSG 130
+++ E KV +R N+ LA +CR GL TG +F YD HP+G G
Sbjct: 399 GCNTIEYLEGRADKVFINVRDNMYSATILAHMCRKLGLHYTYIGTGYMFAYDKEHPIG-G 457
Query: 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNF-----ENVCTLRVRMPISSDLSNPRNFITK 185
FKEED P F GS YS K + + F EN+ +R+ +P+S DL PRN ++K
Sbjct: 458 AEFKEEDEPTFFGSAYSVVKGFTDRQMNYFNQNGWENL-NVRITLPLSLDLEQPRNLLSK 516
Query: 186 ITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPN 245
I +Y+++ +IP S+TIL + + + ++ G N NP +S E++++Y++ +D
Sbjct: 517 IIKYKELFDIPVSLTILPDCMNAMCNLMEQRSGGTLNLVNPEPISLYEVVKIYKEIVDET 576
Query: 246 FTWKNFTLE-EQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFE 294
+ +E E+A+ ++A + N LD KL++ P +LS K+SLIK+ E
Sbjct: 577 VNPTSIGVETERAQHLLATKGNCALDTEKLQSLAP-VLSAKQSLIKHFSE 625
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| TIGR_CMR|GSU_2365 GSU_2365 "dTDP-4-dehydrorhamnose reductase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 61/221 (27%), Positives = 96/221 (43%)
Query: 18 LIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77
L+ G G +G L ++ + + S+ I +KP V N A T +
Sbjct: 3 LVVGAKGMLGRDLMRVLPGDVRGVDIEEIDITSPESVRRVILTLKPRVVVNCAAYT---D 59
Query: 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEED 137
VD CE++ + N G LA V R+ G +L+ +T +F+ P F E+D
Sbjct: 60 VDGCETNADLAMAVNGEGVGHLAAVTREIGALLVQMSTDYVFDGVKESP------FLEDD 113
Query: 138 TPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRY--EK---- 191
PN + S Y ++K M EE + E L VR L +NF+ + R E+
Sbjct: 114 PPNPL-SVYGRSKLMGEEQAR--ETPDHLIVRTQWLYGLGG-KNFVETMLRLSTERSEIA 169
Query: 192 VVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVS 230
VV+ I + +D L IS E+ + N G ++ N G+ S
Sbjct: 170 VVDDQIGSPTWTVDLALAIS-ELIENNCRGTYHAANRGICS 209
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| UNIPROTKB|P29781 strL "dTDP-4-dehydrorhamnose reductase" [Streptomyces griseus (taxid:1911)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00018, P = 0.00018
Identities = 72/277 (25%), Positives = 109/277 (39%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT-YGSGRLE--NRASLEADIAAVKPTHVFNAAGV 72
++L+ G +G +G L L + T G G L+ + A++ + +A +P V N A
Sbjct: 8 RWLVTGASGMLGRELTPLLDRRGAAVTALGRGHLDITDGAAVRSAVAEHRPAVVVNCAAW 67
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T VD ES + N G LA CR G +L+ +T +F G P
Sbjct: 68 TA---VDEAESEPALAMAVNGEGPRHLAQACRAVGAVLLQLSTDYVFPGSGGRPY----- 119
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEK- 191
ED P + Y TK E + VR P NF+ K+ R E
Sbjct: 120 --REDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAWLYGAGGP-NFVAKMIRLEAD 176
Query: 192 -----VVNIPNSMT-----ILDELLPI-SIEMAKRNLTGIWNFTNPGVVSHNEIL-EMYR 239
VV+ + + D L + + +A GI++ TN G + N + E +R
Sbjct: 177 EDTVLVVDDQHGQPTWTADLADRLAALGAAALAGTAPAGIYHATNTGGTTWNALAPETFR 236
Query: 240 QY-IDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLK 275
DP +L A+ V PR + LD S+ K
Sbjct: 237 LLGADPARVRPTTSLA-LARPAVRPRYS-VLDQSRWK 271
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 302 0.00097 115 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 610 (65 KB)
Total size of DFA: 217 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.81u 0.19s 25.00t Elapsed: 00:00:01
Total cpu time: 24.81u 0.19s 25.00t Elapsed: 00:00:01
Start: Sat May 11 06:17:20 2013 End: Sat May 11 06:17:21 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00001074001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (302 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00027921001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (675 aa) | • | • | • | • | • | 0.901 | |||
 | GSVIVG00000750001 | SubName- Full=Chromosome undetermined scaffold_107, whole genome shotgun sequence; (657 aa) | • | • | • | • | • | 0.900 | |||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 302 | |||
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 0.0 | |
| PLN02778 | 298 | PLN02778, PLN02778, 3,5-epimerase/4-reductase | 0.0 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-60 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 4e-14 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-12 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 2e-12 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 3e-11 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 5e-09 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 2e-08 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 4e-05 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 9e-05 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-04 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 8e-04 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 0.001 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 0.001 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 0.002 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 0.002 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 0.002 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 0.002 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 0.004 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 641 bits (1656), Expect = 0.0
Identities = 249/296 (84%), Positives = 266/296 (89%)
Query: 4 PANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKP 63
GS G LKFLIYGRTGWIGGLLGKLC+ Q I + YG GRLE+R+SL ADI VKP
Sbjct: 370 KPAGSSPGKPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKP 429
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123
THVFNAAGVTGRPNVDWCESHKVETIR NVVGTLTLADVCR+ GL+++N+ATGCIFEYD+
Sbjct: 430 THVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDA 489
Query: 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFI 183
HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ ++NVCTLRVRMPISSDLSNPRNFI
Sbjct: 490 KHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNVCTLRVRMPISSDLSNPRNFI 549
Query: 184 TKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243
TKI+RY KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YID
Sbjct: 550 TKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKDYID 609
Query: 244 PNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
P F W NFTLEEQAKVIVAPRSNNE+DASKLK EFPELLSIKESLIKYVFEPNKKT
Sbjct: 610 PGFKWSNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYVFEPNKKT 665
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Length = 668 |
| >gnl|CDD|178377 PLN02778, PLN02778, 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Score = 626 bits (1617), Expect = 0.0
Identities = 267/296 (90%), Positives = 276/296 (93%)
Query: 6 NGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTH 65
+ AGS LKFLIYG+TGWIGGLLGKLCQ Q IDF YGSGRLENRASLEADI AVKPTH
Sbjct: 1 SNGTAGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTH 60
Query: 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGH 125
VFNAAGVTGRPNVDWCESHKVETIR NVVGTLTLADVCR++GL+L NYATGCIFEYD H
Sbjct: 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAH 120
Query: 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITK 185
PLGSGIGFKEEDTPNF GSFYSKTKAMVEELLKN+ENVCTLRVRMPISSDLSNPRNFITK
Sbjct: 121 PLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVRMPISSDLSNPRNFITK 180
Query: 186 ITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPN 245
ITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGI+NFTNPGVVSHNEILEMYR YIDP+
Sbjct: 181 ITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPS 240
Query: 246 FTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKTTG 301
FTWKNFTLEEQAKVIVAPRSNNELD +KLK EFPELL IKESLIKYVFEPNKKT
Sbjct: 241 FTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLPIKESLIKYVFEPNKKTKK 296
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Length = 298 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 2e-60
Identities = 75/298 (25%), Positives = 118/298 (39%), Gaps = 44/298 (14%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR---------LENRASLEADIAAVKPTHV 66
K LI G TG +G L +L + + + G+GR L + ++E I KP +
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEV-IGTGRSRASLFKLDLTDPDAVEEAIRDYKPDVI 59
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
N A T VD CES R NV+ LA ++ G LI+ +T +F+
Sbjct: 60 INCAAYT---RVDKCESDPELAYRVNVLAPENLARAAKEVGARLIHISTDYVFD------ 110
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISS---DLSNPRNF 182
G +KEED PN + Y K+K + E + N LR +
Sbjct: 111 -GKKGPYKEEDAPNPLN-VYGKSKLLGEVAVLNANPRYLILRTSWLYGELKNGENFVEWM 168
Query: 183 ITKI---TRYEKVVNIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMY 238
+ V + S T +L +E+ +RN LTGI++ +N G +S E ++
Sbjct: 169 LRLAAERKEVNVVHDQIGSPTYAADLADAILELIERNSLTGIYHLSNSGPISKYEFAKLI 228
Query: 239 RQ-------YIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEF-PELLSIKESL 288
I P + + + +N+ LD SKL+ + KE+L
Sbjct: 229 ADALGLPDVEIKPITSS-------EYPLPARRPANSSLDCSKLEELGGIKPPDWKEAL 279
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dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 66/279 (23%), Positives = 106/279 (37%), Gaps = 32/279 (11%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQA--QSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGV 72
+K LI G G +G L + + I + + ++ I +P V NAA
Sbjct: 1 MKILITGANGQLGTELRRALPGEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T VD ES N G LA + G L++ +T +F+ + G P
Sbjct: 61 T---AVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGP------ 111
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYE- 190
+KE DTPN + + Y ++K EE ++ LR NF+ + R
Sbjct: 112 YKETDTPNPL-NVYGRSKLAGEEAVRAAGPRHLILRTSWVYGEY---GNNFVKTMLRLAK 167
Query: 191 -----KVVN-IPNSMTILDELLPISIEMAKRNLT-GIWNFTNPGVVSHNEILEMYRQYID 243
KVV+ S T ++L +E+ ++ G+++ N G S E + I
Sbjct: 168 EGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYHLVNSGECSWYEFA----KAIF 223
Query: 244 PNFTWKNFTLE---EQAKVIVAPR-SNNELDASKLKTEF 278
+E A R +N+ LD KL+ F
Sbjct: 224 EEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAF 262
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Length = 281 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 28/161 (17%)
Query: 18 LIYGRTGWIGGLLGKLCQAQSID---FTYGS--------------GRLENRASLEADIAA 60
L+ G TG+IG L + + + G L + +LE +A
Sbjct: 2 LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIRFHEGDLTDPDALERLLAE 61
Query: 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA-TGCIF 119
V+P V + A +G V + IR NV+GTL L + R G+ +A + ++
Sbjct: 62 VQPDAVIHLAAQSG---VGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSSEVY 118
Query: 120 EYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160
+ E+ + S Y+ K E L++ +
Sbjct: 119 ------GDVADPPITEDTPLGPL-SPYAAAKLAAERLVEAY 152
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This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 31/230 (13%)
Query: 18 LIYGRTGWIGGLLGKLCQAQSIDFTYGSGR----LENRASLEADIAAVKPTHVFNAAGVT 73
L+ G G +G L +L + ++ R L + ++ A + +P V NAA T
Sbjct: 2 LVTGANGQLGRELTRLLAERGVEV-VALDRPELDLTDPEAVAALVREARPDVVVNAAAYT 60
Query: 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGF 133
VD ES N +G LA+ C +G LI+ +T +F+ G P +
Sbjct: 61 ---AVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVFDGAKGGP------Y 111
Query: 134 KEEDTPNFVGSFYSKTKAMVEE-LLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEK- 191
+E+D + Y +TK E+ +L LR NF+ + R
Sbjct: 112 REDDPTGPLN-VYGRTKLAGEQAVLAANPRHLILRTAWVYG---EYGNNFVKTMLRLAAE 167
Query: 192 -----VVN----IPNS-MTILDELLP-ISIEMAKRNLTGIWNFTNPGVVS 230
VV+ P S + D LL I + L G ++ G S
Sbjct: 168 RDELRVVDDQLGSPTSARDLADALLALIRKRLRGPALAGTYHLAGSGETS 217
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L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-11
Identities = 53/299 (17%), Positives = 98/299 (32%), Gaps = 49/299 (16%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------------SLEADI 58
+ L+ G G+IG L + A D G RL + L ++
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHD-VRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDEL 60
Query: 59 AAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA--TG 116
A P V + A + P D S E + NV GTL L + R G+ +A
Sbjct: 61 AKGVPDAVIHLAAQSSVP--DSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118
Query: 117 CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRV--- 168
++ P E+ P + Y +K E+LL+ + V LR
Sbjct: 119 VVYGDPPPLP------IDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNV 172
Query: 169 ---RMPISSDLSNPRNFITKITRYEKVVNIPNSMTI------LDELLPISIEMAKRNLTG 219
FI ++ + E ++ I + +D++ + + G
Sbjct: 173 YGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG 232
Query: 220 IWNFTNPGV-VSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTE 277
++N + ++ E+ E + + + + + + LD SK +
Sbjct: 233 VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKL---LDISKARAA 288
|
Length = 314 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 5e-09
Identities = 50/227 (22%), Positives = 89/227 (39%), Gaps = 23/227 (10%)
Query: 16 KFLIYGRTGWIG-GLLGKLCQAQSIDFTYGSGR--LENRASLEADIAAVKPTHVFNAAGV 72
+ LI G G +G L+ +L + + L + +LE + A++P V N A
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALTRSQLDLTDPEALERLLRAIRPDAVVNTAAY 60
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T +VD ES + N + LA G L++ +T +F+ + P
Sbjct: 61 T---DVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRP------ 111
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEK- 191
++E+D N + Y ++K E+ ++ L VR RNF+ + R
Sbjct: 112 YREDDATNPLN-VYGQSKLAGEQAVRAA-GPNALIVRTSWLYGGGGGRNFVRTMLRLAGR 169
Query: 192 ------VVNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVVS 230
V + S T +L + + +R G+++ N G S
Sbjct: 170 GEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANSGQCS 216
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYD 122
V + A + G V + E TNVVGTL L + R G+ + ++ + Y
Sbjct: 32 DVVVHLAALVG---VPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASV--YG 86
Query: 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLR 167
S L +EE+TP S Y +K E LL+++ V LR
Sbjct: 87 SPEGLP-----EEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVVILR 131
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 30 LGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89
L + + F G R +R LE + VF+AA + +V E + +E I
Sbjct: 43 LRQEYNDPKLRFFIGDVR--DRERLERAMEQHGVDTVFHAAALK---HVPLVEYNPMEAI 97
Query: 90 RTNVVGTLTLADVCRDKG 107
+TNV+GT +A+ + G
Sbjct: 98 KTNVLGTENVAEAAIENG 115
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 18/131 (13%)
Query: 32 KLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRT 91
+L + S + +G L + LE P VF+ A N D +
Sbjct: 37 ELDPSSSGRVQFHTGDLTDPQDLEKAFNEKGPNVVFHTASPDHGSNDDLYY-------KV 89
Query: 92 NVVGTLTLADVCRDKGL-ILI-NYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG--SFYS 147
NV GT + + CR G+ L+ + +F G + +G +E P Y+
Sbjct: 90 NVQGTRNVIEACRKCGVKKLVYTSSASVVFN---GQDIING----DESLPYPDKHQDAYN 142
Query: 148 KTKAMVEELLK 158
+TKA+ E+L+
Sbjct: 143 ETKALAEKLVL 153
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 40/167 (23%)
Query: 18 LIYGRTGWIGGLLGK-----------LCQAQS---------IDFTYGSGRLENRASLEAD 57
L+ G TG++G L + L ++ S ++ G L + ASL A
Sbjct: 2 LVTGATGFLGSNLVRALLAQGYRVRALVRSGSDAVLLDGLPVEVVEGD--LTDAASLAA- 58
Query: 58 IAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117
A VF+ A T + E RTNV GT + D + G+ + + +
Sbjct: 59 -AMKGCDRVFHLAAFT-----SLWAKDRKELYRTNVEGTRNVLDAALEAGVRRVVHTS-- 110
Query: 118 IFEYDSGHPLG-SGIGFKEEDTPNFVGSF---YSKTKAMVEELLKNF 160
S LG G +E TP F Y ++K + E +
Sbjct: 111 -----SIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEA 152
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 40 DFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTL 99
T G L + +SL I V+P +++ A + V + T N VGTL L
Sbjct: 50 RITLHYGDLTDSSSLRRAIEKVRPDEIYHLAAQS-HVKVSF--DDPEYTAEVNAVGTLNL 106
Query: 100 ADVCRDKGL 108
+ R GL
Sbjct: 107 LEAIRILGL 115
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 50 NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107
++ L P VF+AA + +V E + E I+TNV+GT + D + G
Sbjct: 65 DKERLRRAFKERGPDIVFHAAALK---HVPSMEDNPEEAIKTNVLGTKNVIDAAIENG 119
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 48/204 (23%), Positives = 72/204 (35%), Gaps = 47/204 (23%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDF--------TYGSGRLENRASLEADIAAVKPTHVF 67
+ L+ G G+IG + + D TY G LEN A LE + P + F
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYA-GNLENLADLEDN-----PRYRF 54
Query: 68 NAAGVTGRPNVD-WCESHKVET--------------------IRTNVVGTLTLADVCRD- 105
+ R V H+ + I TNVVGT TL + R
Sbjct: 55 VKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKY 114
Query: 106 -KGLILINYATGCIFEYDSGHPLGSGIGFKEED--TPNFVGSFYSKTKAMVEELLKNFEN 162
+ +T ++ G L G F E P+ S YS +KA + L++ +
Sbjct: 115 WHEFRFHHISTDEVY----GD-LEKGDAFTETTPLAPS---SPYSASKAASDHLVRAYHR 166
Query: 163 VCTLRVRMPISSDLSNPRNFITKI 186
L + S+ P F K+
Sbjct: 167 TYGLPALITRCSNNYGPYQFPEKL 190
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 19/141 (13%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES--HKVETIRTNVVGTLTLADVC 103
G L +R L+ K V + AG+ ES ++ R NVVGTL L +
Sbjct: 54 GDLRDRELLDRLFEEHKIDAVIHFAGLIAVG-----ESVQKPLKYYRNNVVGTLNLLEAM 108
Query: 104 RDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-- 161
+ G+ +++ Y G P I ED+P + Y ++K M E++L++ +
Sbjct: 109 QQAGVKKFIFSSSAAV-Y--GEPSSIPI---SEDSPLGPINPYGRSKLMSEQILRDLQKA 162
Query: 162 ----NVCTLRVRMPISSDLSN 178
+ LR + S
Sbjct: 163 DPDWSYVILRYFNVAGAHPSG 183
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 90 RTNVVGTLTLADVCRD---KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146
NVVGTL L + R K + + A Y G P I E+ P + Y
Sbjct: 94 DNNVVGTLNLLEAMRAHGVKNFVFSSSAAV----Y--GEPETVPI---TEEAPLNPTNPY 144
Query: 147 SKTKAMVEELLKNFENVCTLRV 168
+TK MVE++L++ L
Sbjct: 145 GRTKLMVEQILRDLAKAPGLNY 166
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVC-RDKGLILINYATGCIFEYD 122
+ + A V++ E + + TNV+GT + + + K L + +T +
Sbjct: 87 DVIIHNAAT-----VNFVEPYS-DLRATNVLGTREVLRLAKQMKKLPFHHVSTAYVNGER 140
Query: 123 SGHPLGSGIGFKEEDTPNFVGSF---YSKTKAMVEELL 157
G +ED P +G Y+++K + E+L+
Sbjct: 141 GGLLEEKPYKL-DEDEPALLGGLPNGYTQSKWLAEQLV 177
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 50 NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVC 103
+R +E + K VF+AA + +V E + E I+TNV+GT +A+
Sbjct: 313 DRDRVERAMEGHKVDIVFHAAALK---HVPLVEYNPEEAIKTNVLGTENVAEAA 363
|
Length = 588 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 36/197 (18%), Positives = 81/197 (41%), Gaps = 24/197 (12%)
Query: 77 NVDWCESHKVETIR-TNVVGTLTLADVCRDKGLILINYA-TGCIFEYDSGHPLGSGIGFK 134
NV+W + E ++ NV+GT L + L +++ T +F + + L
Sbjct: 99 NVNWVYPY--EELKPANVLGTKELLKLAATGKLKPLHFVSTLSVFSAEEYNALDDEESDD 156
Query: 135 EEDTPNFVGSFYSKTKAMVEELLKNFEN----VCTLRVRMPISSD----LSNPRNFITKI 186
++ N + + Y ++K + E+LL+ N V +R I D + N +F ++
Sbjct: 157 MLESQNGLPNGYIQSKWVAEKLLREAANRGLPVAIIRPGN-IFGDSETGIGNTDDFFWRL 215
Query: 187 TR--YE--KVVNIPN--SMTILDELLPISIEMAKRNLTGIWNF--TNPGVVSHNEILEMY 238
+ + ++ +D + +++A + NP ++S N++L+
Sbjct: 216 LKGCLQLGIYPISGAPLDLSPVDWVARAIVKLALNESNEFSIYHLLNPPLISLNDLLDAL 275
Query: 239 RQYIDPNFTWKNFTLEE 255
+ ++ K + EE
Sbjct: 276 EEK---GYSIKEVSYEE 289
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.004
Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 33/218 (15%)
Query: 86 VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145
V+TI+TNVVGTL + + + G + +T ++ HP + P V S
Sbjct: 204 VKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVE--TYWGNVNPIGVRSC 261
Query: 146 YSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR----------NFITKITRYEKVV-- 193
Y + K E L ++ + VR+ + PR NF+ + R E +
Sbjct: 262 YDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY 321
Query: 194 ---NIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN 250
S + +L+ + + + G +N NPG + E+ ++ ++ IDPN
Sbjct: 322 GDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPN----- 376
Query: 251 FTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESL 288
AK+ P N E D K K P++ KE L
Sbjct: 377 ------AKIEFRP--NTEDDPHKRK---PDITKAKELL 403
|
Length = 442 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.98 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.98 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.97 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.97 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.97 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.96 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.96 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.96 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.96 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.96 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.95 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.94 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.93 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.92 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.91 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.9 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.89 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.87 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.86 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.86 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.85 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.85 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.83 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.82 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.82 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.82 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.81 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.81 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.81 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.8 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.79 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.79 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.79 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.78 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.78 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.76 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.76 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.75 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.75 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.75 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.75 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.75 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.74 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.74 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.73 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.73 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.72 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.72 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.72 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.72 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.72 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.71 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.71 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.71 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.7 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.7 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.7 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.69 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.69 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.69 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.69 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.68 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.68 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.68 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.67 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.67 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.67 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.67 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.67 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.66 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.65 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.64 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.63 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.63 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.63 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.63 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.63 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.62 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.62 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.62 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.61 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.61 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.61 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.61 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.61 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.6 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.6 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.6 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.6 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.59 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.59 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.59 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.59 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.59 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.59 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.57 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.55 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.55 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.55 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.55 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.54 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.54 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.53 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.52 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.52 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.51 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.49 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.49 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.49 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.49 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.48 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.47 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.46 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.46 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.45 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.45 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.44 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.44 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.44 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.43 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.43 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.42 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.41 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.4 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.39 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.39 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.39 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.38 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.35 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.34 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.33 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.31 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.27 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.27 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.26 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.25 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.25 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.24 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.23 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.22 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.18 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.18 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.17 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.14 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.13 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.11 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.1 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.08 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.07 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.05 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.02 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.02 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.01 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 98.99 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 98.82 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.78 | |
| PLN00106 | 323 | malate dehydrogenase | 98.76 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.72 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.71 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.69 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.68 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.63 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.57 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 98.53 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.5 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.41 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.33 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 98.25 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.23 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.21 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.1 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 98.09 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.0 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.99 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 97.96 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.96 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.94 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.94 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.92 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.91 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.9 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.86 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.79 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.79 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.77 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.72 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 97.71 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.68 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.68 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.57 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.54 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.53 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.49 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.47 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.44 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.37 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.35 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 97.34 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.33 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.33 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.33 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.32 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.3 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.29 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.27 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 97.26 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.17 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.17 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.14 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.11 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.07 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.06 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 97.04 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 97.03 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.98 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.96 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.94 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.94 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.91 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.91 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 96.91 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.9 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.86 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.86 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.83 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.82 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.78 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.73 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.71 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.71 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.68 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 96.68 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 96.66 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.65 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 96.65 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.65 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.64 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.63 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.61 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.58 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.55 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.54 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.52 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 96.52 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.49 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 96.48 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.46 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 96.46 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.42 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.42 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.41 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.37 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.37 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.35 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.33 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.31 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.28 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.26 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.26 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.23 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.23 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.19 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.19 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.17 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.14 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.13 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.12 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.11 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.06 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.0 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.98 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.97 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.95 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.94 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.94 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.92 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.9 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.88 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.87 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.85 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 95.84 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.83 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.83 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.73 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 95.69 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.66 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.66 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.64 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.56 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.56 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.55 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.5 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.5 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.49 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 95.48 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 95.46 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.42 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.42 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.41 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.39 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.35 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 95.34 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 95.32 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.32 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.31 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 95.3 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.27 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 95.24 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 95.22 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.18 | |
| PRK12767 | 326 | carbamoyl phosphate synthase-like protein; Provisi | 95.15 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 95.15 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.14 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 95.12 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 95.1 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.09 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.08 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.07 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.04 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.01 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.95 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.94 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 94.93 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.91 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 94.91 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 94.91 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 94.89 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.87 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.86 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 94.83 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.83 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.81 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.8 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.78 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.78 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 94.73 | |
| PRK08591 | 451 | acetyl-CoA carboxylase biotin carboxylase subunit; | 94.7 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 94.69 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.68 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 94.62 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 94.6 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 94.59 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 94.55 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.53 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.49 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.48 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.43 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.42 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 94.39 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.37 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 94.27 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.23 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.19 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.16 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.15 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.15 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 94.14 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 94.13 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 94.13 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.11 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 94.06 |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=316.43 Aligned_cols=290 Identities=89% Similarity=1.381 Sum_probs=240.3
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHH
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~ 89 (302)
+.++.||||||||+||||++|+++|+++|++|+...+|+.+.+.+...++..++|+|||+||..+.+...++..++...+
T Consensus 5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~ 84 (298)
T PLN02778 5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETI 84 (298)
T ss_pred CCCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHH
Confidence 34456899999999999999999999999999888889999998988888888999999999874333345667899999
Q ss_pred HHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCceEEeee
Q 022112 90 RTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVR 169 (302)
Q Consensus 90 ~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~lR~~ 169 (302)
++|+.++.+++++|++.+++++++||+++|+.....|.+++.+++|++++.++.+.|+.+|.++|.++..+.+..++|+.
T Consensus 85 ~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~~~~lr~~ 164 (298)
T PLN02778 85 RANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVCTLRVR 164 (298)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhhccEEeeec
Confidence 99999999999999999999999999999986543333224468888887766689999999999999999888999999
Q ss_pred cccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccc
Q 022112 170 MPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWK 249 (302)
Q Consensus 170 ~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~ 249 (302)
+.++.+...+..|+..++.+..+.....+|+|++|++++++.+++++..|+||+++++.+|++|+++.+++.+|....|.
T Consensus 165 ~~~~~~~~~~~~fi~~~~~~~~~~~~~~s~~yv~D~v~al~~~l~~~~~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~ 244 (298)
T PLN02778 165 MPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPSFTWK 244 (298)
T ss_pred ccCCcccccHHHHHHHHHcCCCeeEcCCCCEEHHHHHHHHHHHHhCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCceec
Confidence 88887643446689999888776666679999999999999999876668999999999999999999999999876555
Q ss_pred cccccccceeeecCCCCCccCchhHHHhCC-CcchHHHHHHHHHhhchhhhc
Q 022112 250 NFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~~~~ 300 (302)
.+...+.......++.+..+|++|+++.++ ..+..++++ +.+++.+|+..
T Consensus 245 ~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 295 (298)
T PLN02778 245 NFTLEEQAKVIVAPRSNNELDTTKLKREFPELLPIKESLI-KYVFEPNKKTK 295 (298)
T ss_pred cccHHHHHHHHhCCCccccccHHHHHHhcccccchHHHHH-HHHHHHHHhhh
Confidence 444443322234445455899999999999 688889999 99998887653
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=292.15 Aligned_cols=265 Identities=24% Similarity=0.303 Sum_probs=229.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRT 91 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~ 91 (302)
|+|||||++|++|+.|++.|. .+++|+. -..|++|++.+.+++++.+||+|||+|+++ .++.++.+++..+.+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt---~vD~aE~~~e~A~~v 76 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYT---AVDKAESEPELAFAV 76 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhCCCEEEECcccc---ccccccCCHHHHHHh
Confidence 569999999999999999999 6688887 457899999999999999999999999999 699999999999999
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-cCceEEeeec
Q 022112 92 NVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRM 170 (302)
Q Consensus 92 n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~ 170 (302)
|..++.+++++|++.|+++||+||.+||.+.. +.||.|++.+.|. +.||.||.+.|..++++ .+..|+|.+|
T Consensus 77 Na~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~------~~~Y~E~D~~~P~-nvYG~sKl~GE~~v~~~~~~~~I~Rtsw 149 (281)
T COG1091 77 NATGAENLARAAAEVGARLVHISTDYVFDGEK------GGPYKETDTPNPL-NVYGRSKLAGEEAVRAAGPRHLILRTSW 149 (281)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeecceEecCCC------CCCCCCCCCCCCh-hhhhHHHHHHHHHHHHhCCCEEEEEeee
Confidence 99999999999999999999999999999876 6789999999987 99999999999999777 7779999999
Q ss_pred ccCCCCCCchhhHHHHhc----ccc---cccccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhc
Q 022112 171 PISSDLSNPRNFITKITR----YEK---VVNIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 171 v~g~~~~~~~~~~~~~~~----~~~---~~~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
+||. .+.+|+..+++ +.. +.++..++++..|+|+++..++... ..++||+++...+||.||++.+.+.+
T Consensus 150 v~g~---~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH~~~~g~~Swydfa~~I~~~~ 226 (281)
T COG1091 150 VYGE---YGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYHLVNSGECSWYEFAKAIFEEA 226 (281)
T ss_pred eecC---CCCCHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEEEeCCCcccHHHHHHHHHHHh
Confidence 9997 44677665554 323 3368889999999999999999876 45699999999999999999999999
Q ss_pred CCCCccccccccccceeeecCCC-CCccCchhHHHhCC-CcchHHHHHHHHHhhc
Q 022112 243 DPNFTWKNFTLEEQAKVIVAPRS-NNELDASKLKTEFP-ELLSIKESLIKYVFEP 295 (302)
Q Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~ 295 (302)
+.+....+.. .....+...+|+ ++.+|+.|+++.+| .+++|++++ +.+++.
T Consensus 227 ~~~~~v~~~~-~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~~w~~~l-~~~~~~ 279 (281)
T COG1091 227 GVDGEVIEPI-ASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREAL-KALLDE 279 (281)
T ss_pred CCCccccccc-cccccCccCCCCcccccchHHHHHHhCCCCccHHHHH-HHHHhh
Confidence 9665432211 222345667774 77899999999999 899999999 777654
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=288.06 Aligned_cols=266 Identities=18% Similarity=0.181 Sum_probs=217.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
|+||||||+||||+|.+.+|++.|++|++ +.+|+.|.+.+.++|++.++|.|||+||..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~-- 78 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASI-- 78 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccc--
Confidence 68999999999999999999999999988 679999999999999999999999999998
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
.+..+..+|..+++.|+.+|.+|+++|++.+++ +||-||..|||... ..|++|+.+..|. ++||.||++.|
T Consensus 79 -~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~------~~PI~E~~~~~p~-NPYG~sKlm~E 150 (329)
T COG1087 79 -SVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPT------TSPISETSPLAPI-NPYGRSKLMSE 150 (329)
T ss_pred -ccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCC------CcccCCCCCCCCC-CcchhHHHHHH
Confidence 588899999999999999999999999999998 66666778999876 5677999988866 99999999999
Q ss_pred HHHHhhcCc-----eEEeeecccCCCCCC--------chhhHHHHhc---ccc----cc-------c--ccCCcccHhhH
Q 022112 155 ELLKNFENV-----CTLRVRMPISSDLSN--------PRNFITKITR---YEK----VV-------N--IPNSMTILDEL 205 (302)
Q Consensus 155 ~~~~~~~~~-----~~lR~~~v~g~~~~~--------~~~~~~~~~~---~~~----~~-------~--~~~~~i~v~D~ 205 (302)
++++.+.+. ++||..++.|....+ ..++++.+.. |+. ++ + ..||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 999776433 889999998865331 2344544432 222 11 1 36799999999
Q ss_pred HHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCCCc
Q 022112 206 LPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPEL 281 (302)
Q Consensus 206 a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~ 281 (302)
|++++++++. ....+||+++|+-.|+.|+++.+.++.|.+++..--+ .+....+....|++|+++.|||.
T Consensus 231 A~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~------RR~GDpa~l~Ad~~kA~~~Lgw~ 304 (329)
T COG1087 231 ADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAP------RRAGDPAILVADSSKARQILGWQ 304 (329)
T ss_pred HHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCC------CCCCCCceeEeCHHHHHHHhCCC
Confidence 9999999975 2235999999999999999999999999887642111 11111134578999999999933
Q ss_pred ---chHHHHHHHHHhhchh
Q 022112 282 ---LSIKESLIKYVFEPNK 297 (302)
Q Consensus 282 ---~~~~e~i~~~~~~~~~ 297 (302)
.++++.+ ++...|.+
T Consensus 305 p~~~~L~~ii-~~aw~W~~ 322 (329)
T COG1087 305 PTYDDLEDII-KDAWDWHQ 322 (329)
T ss_pred cccCCHHHHH-HHHHHHhh
Confidence 3889988 88777766
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=308.56 Aligned_cols=266 Identities=28% Similarity=0.421 Sum_probs=199.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRT 91 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~ 91 (302)
||||||||+|+||++|.++|.++|++|+.. ..|++|.+.+.+.+.+.+||+||||||.. +++.+..+++..+.+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~aa~~---~~~~ce~~p~~a~~i 77 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINCAAYT---NVDACEKNPEEAYAI 77 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE---------HHHHHHSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEeccceee---cHHhhhhChhhhHHH
Confidence 899999999999999999999999999996 78899999999999999999999999998 689999999999999
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHh-hcCceEEeeec
Q 022112 92 NVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN-FENVCTLRVRM 170 (302)
Q Consensus 92 n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~-~~~~~~lR~~~ 170 (302)
|+.++.+|+++|++.++++||+||..||++.. ..||.|++++.|. +.||.+|.++|+.+++ ..+..|+|+++
T Consensus 78 N~~~~~~la~~~~~~~~~li~~STd~VFdG~~------~~~y~E~d~~~P~-~~YG~~K~~~E~~v~~~~~~~~IlR~~~ 150 (286)
T PF04321_consen 78 NVDATKNLAEACKERGARLIHISTDYVFDGDK------GGPYTEDDPPNPL-NVYGRSKLEGEQAVRAACPNALILRTSW 150 (286)
T ss_dssp HTHHHHHHHHHHHHCT-EEEEEEEGGGS-SST------SSSB-TTS----S-SHHHHHHHHHHHHHHHH-SSEEEEEE-S
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccEEEcCCc------ccccccCCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEecce
Confidence 99999999999999999999999999998775 6789999999877 9999999999999976 57779999999
Q ss_pred ccCCCCCCchhhHHHH----hccccc---ccccCCcccHhhHHHHHHHHHhcCCC-----CeEEecCCCccCHHHHHHHH
Q 022112 171 PISSDLSNPRNFITKI----TRYEKV---VNIPNSMTILDELLPISIEMAKRNLT-----GIWNFTNPGVVSHNEILEMY 238 (302)
Q Consensus 171 v~g~~~~~~~~~~~~~----~~~~~~---~~~~~~~i~v~D~a~~~~~~~~~~~~-----~~~~~~~~~~~s~~e~~~~~ 238 (302)
+||+ ...+|+.++ ..++.+ .++.++++|++|+|+++..++++... |+||+++++.+|+.|+++.+
T Consensus 151 ~~g~---~~~~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i 227 (286)
T PF04321_consen 151 VYGP---SGRNFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAI 227 (286)
T ss_dssp EESS---SSSSHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHH
T ss_pred eccc---CCCchhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHH
Confidence 9998 334444443 334432 34677899999999999999988544 99999999999999999999
Q ss_pred HhhcCCCCcc-ccccccccceeeecCC-CCCccCchhHHHhCC-CcchHHHHHHHHHhhch
Q 022112 239 RQYIDPNFTW-KNFTLEEQAKVIVAPR-SNNELDASKLKTEFP-ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 239 ~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~ 296 (302)
++.+|.+... .+...... .....| .+..+|++|+++.|| .+++|+++| +++++.+
T Consensus 228 ~~~~~~~~~~i~~~~~~~~--~~~~~rp~~~~L~~~kl~~~~g~~~~~~~~~l-~~~~~~~ 285 (286)
T PF04321_consen 228 AKILGLDPELIKPVSSSEF--PRAAPRPRNTSLDCRKLKNLLGIKPPPWREGL-EELVKQY 285 (286)
T ss_dssp HHHHTHCTTEEEEESSTTS--TTSSGS-SBE-B--HHHHHCTTS---BHHHHH-HHHHHHH
T ss_pred HHHhCCCCceEEecccccC--CCCCCCCCcccccHHHHHHccCCCCcCHHHHH-HHHHHHh
Confidence 9999987632 22222211 223344 367899999999999 999999999 8877653
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=282.46 Aligned_cols=270 Identities=18% Similarity=0.149 Sum_probs=225.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcE--EE------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDF--TY------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V--~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
|++|||||+||||++++++++++..+. +. +.+|+.|.+.+.+++.+.++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 689999999999999999999976543 33 8999999999999999999999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
+||-. +++.+...|..++++|+.||.+||+++++... ||+++||..|||+-... +..++|+++..|. +||
T Consensus 81 fAAES---HVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~----~~~FtE~tp~~Ps-SPY 152 (340)
T COG1088 81 FAAES---HVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLD----DDAFTETTPYNPS-SPY 152 (340)
T ss_pred echhc---cccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCC----CCCcccCCCCCCC-CCc
Confidence 99988 79999999999999999999999999999874 79999999999976531 3468999999877 999
Q ss_pred hhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCc----hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 147 SKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNP----RNFITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
+.||+.++.++++|... +|.|+++-|||-. .+ +.++.+++.|.+++ .+.|||+||+|-|+|+..+
T Consensus 153 SASKAasD~lVray~~TYglp~~ItrcSNNYGPyq-fpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~V 231 (340)
T COG1088 153 SASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQ-FPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLV 231 (340)
T ss_pred chhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCc-CchhhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHH
Confidence 99999999999988654 7788888888754 33 34555666777654 2688999999999999999
Q ss_pred HhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCC----CCccCchhHHHhCC--CcchHH
Q 022112 213 AKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRS----NNELDASKLKTEFP--ELLSIK 285 (302)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~k~~~~lg--~~~~~~ 285 (302)
+.++. +++||++++...+..|+++.|.+.+|...+. -.........|+ ...+|.+|++++|| +..+++
T Consensus 232 l~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~-----~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe 306 (340)
T COG1088 232 LTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPD-----YRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFE 306 (340)
T ss_pred HhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccc-----hhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHH
Confidence 99864 5699999999999999999999999987552 011112334442 44799999999999 667999
Q ss_pred HHHHHHHhhchhhh
Q 022112 286 ESLIKYVFEPNKKT 299 (302)
Q Consensus 286 e~i~~~~~~~~~~~ 299 (302)
++| +.+++|..+|
T Consensus 307 ~Gl-rkTv~WY~~N 319 (340)
T COG1088 307 TGL-RKTVDWYLDN 319 (340)
T ss_pred HHH-HHHHHHHHhc
Confidence 999 8888877665
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=298.58 Aligned_cols=280 Identities=17% Similarity=0.143 Sum_probs=213.2
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------ecCCCChhhHHHHHh
Q 022112 9 DAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------SGRLENRASLEADIA 59 (302)
Q Consensus 9 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------~~dl~~~~~~~~~~~ 59 (302)
...-++|||||||||||||++|+++|+++|++|+++ .+|+.|.+.+.++++
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 344456899999999999999999999999988763 468888888888888
Q ss_pred hcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 60 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 60 ~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++|+|||+|+.. .......++....++|+.++.+++++|++.+++ +|++||++|||... +.+..|+++
T Consensus 90 --~~d~ViHlAa~~---~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~------~~~~~e~~~ 158 (348)
T PRK15181 90 --NVDYVLHQAALG---SVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHP------DLPKIEERI 158 (348)
T ss_pred --CCCEEEECcccc---CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCC------CCCCCCCCC
Confidence 799999999976 244455678889999999999999999999885 99999999999654 345567666
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-------chhhHHHHhcccccc-----cccCCccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-------PRNFITKITRYEKVV-----NIPNSMTI 201 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~~~-----~~~~~~i~ 201 (302)
..|. ++|+.+|.++|++++.+. ..+++||+.+||++... .+.++..++.+.++. .+.++|+|
T Consensus 159 ~~p~-~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~ 237 (348)
T PRK15181 159 GRPL-SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCY 237 (348)
T ss_pred CCCC-ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEE
Confidence 6555 899999999999887653 23999999999986421 134566666666532 24679999
Q ss_pred HhhHHHHHHHHHhcC----CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHh
Q 022112 202 LDELLPISIEMAKRN----LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTE 277 (302)
Q Consensus 202 v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 277 (302)
++|+|++++.++..+ .+++||+++++.+|++|+++.+.+.++.........................+|++|+++.
T Consensus 238 v~D~a~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 317 (348)
T PRK15181 238 IENVIQANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTF 317 (348)
T ss_pred HHHHHHHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHH
Confidence 999999999877542 3579999999999999999999999874311000000000000111112457899999999
Q ss_pred CC--CcchHHHHHHHHHhhchhhhcC
Q 022112 278 FP--ELLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 278 lg--~~~~~~e~i~~~~~~~~~~~~~ 301 (302)
+| +..+++|+| +++++|++.+.+
T Consensus 318 lGw~P~~sl~egl-~~~~~w~~~~~~ 342 (348)
T PRK15181 318 LSYEPEFDIKEGL-KQTLKWYIDKHS 342 (348)
T ss_pred hCCCCCCCHHHHH-HHHHHHHHHhcc
Confidence 99 556999999 999998877654
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=290.94 Aligned_cols=271 Identities=17% Similarity=0.256 Sum_probs=207.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVE 87 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~ 87 (302)
||||||||+||||++|+++|+++| +|+++ .+|++|.+.+.+++++.++|+|||||+.. .+..+..++..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~---~~~~~~~~~~~ 76 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAAAHT---AVDKAESEPEF 76 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEEECCccC---CcchhhcCHHH
Confidence 689999999999999999999999 67763 47999999999999987899999999987 45566778888
Q ss_pred HHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-cCceEE
Q 022112 88 TIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTL 166 (302)
Q Consensus 88 ~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~~~~~l 166 (302)
.+.+|+.++.+++++|++.++++|++||+.||++.. ..|++|++++.|. ++|+.+|..+|+++..+ .+.+++
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~------~~p~~E~~~~~P~-~~Yg~sK~~~E~~~~~~~~~~~il 149 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTG------DIPWQETDATAPL-NVYGETKLAGEKALQEHCAKHLIF 149 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCC------CCCcCCCCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999998764 4578898888766 89999999999998776 455999
Q ss_pred eeecccCCCCCC-chhhHHHHhcccccc---cc----cCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHH
Q 022112 167 RVRMPISSDLSN-PRNFITKITRYEKVV---NI----PNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEM 237 (302)
Q Consensus 167 R~~~v~g~~~~~-~~~~~~~~~~~~~~~---~~----~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~ 237 (302)
|++++||+.... ...|+..+.++.++. +. .+.+.+++|+++++..+++++ ..|+||+++++.+|+.|+++.
T Consensus 150 R~~~vyGp~~~~~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~~giyni~~~~~~s~~e~~~~ 229 (299)
T PRK09987 150 RTSWVYAGKGNNFAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVASGTTTWHDYAAL 229 (299)
T ss_pred ecceecCCCCCCHHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCCCCeEEeeCCCCccHHHHHHH
Confidence 999999985311 133444444454422 11 223445667777887777653 458999999999999999999
Q ss_pred HHhhc---CCCCccccc-cccccceeeecCC-CCCccCchhHHHhCC-CcchHHHHHHHHHhhchh
Q 022112 238 YRQYI---DPNFTWKNF-TLEEQAKVIVAPR-SNNELDASKLKTEFP-ELLSIKESLIKYVFEPNK 297 (302)
Q Consensus 238 ~~~~~---g~~~~~~~~-~~~~~~~~~~~~~-~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~ 297 (302)
+.+.+ |.+.+...+ ............| .+..+|++|+++.|| .+++|+|+| +++++.+.
T Consensus 230 i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~~~~~~l-~~~~~~~~ 294 (299)
T PRK09987 230 VFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLPDWQVGV-KRMLTELF 294 (299)
T ss_pred HHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCccHHHHH-HHHHHHHh
Confidence 98864 433210000 0011111122334 366899999999999 667999999 88877654
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=306.14 Aligned_cols=282 Identities=83% Similarity=1.334 Sum_probs=230.8
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHH
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRT 91 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~ 91 (302)
.++||||||||+||||++|++.|.++|++|....+|++|.+.+...+.+.++|+|||||+.++.+.++++..++...+++
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~ 457 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRA 457 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEeeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHH
Confidence 35689999999999999999999999999977788999999999999988999999999987544456778899999999
Q ss_pred hHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCceEEeeecc
Q 022112 92 NVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMP 171 (302)
Q Consensus 92 n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~~lR~~~v 171 (302)
|+.++.+++++|++.++++|++||++||+.....+.....|+.|++++.++.+.|+.+|.++|++++.+.+..++|+.++
T Consensus 458 N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~~~~r~~~~ 537 (668)
T PLN02260 458 NVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNVCTLRVRMP 537 (668)
T ss_pred HhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhheEEEEEEe
Confidence 99999999999999999999999999997543222211347889888776668999999999999988888899999999
Q ss_pred cCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccc
Q 022112 172 ISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 172 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
|++...++.+|+..+++.......+.+..+++|++.+++.+++...+|+||+++++.+|++|+++.+.+.++....+.++
T Consensus 538 ~~~~~~~~~nfv~~~~~~~~~~~vp~~~~~~~~~~~~~~~l~~~~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~ 617 (668)
T PLN02260 538 ISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNF 617 (668)
T ss_pred cccCCCCccHHHHHHhccceeeccCCCceehhhHHHHHHHHHHhCCCceEEecCCCcCcHHHHHHHHHHhcCCccccccc
Confidence 98665567799999998877555567788899999998888876556899999999999999999999988533223333
Q ss_pred cccccceeeecCCCCCccCchhHHHhCCCcchHHHHHHHHHhh
Q 022112 252 TLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFE 294 (302)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~~~~~e~i~~~~~~ 294 (302)
...+......++|+...+|++|+++.++..++|+|+| ++++.
T Consensus 618 ~~~~~~~~~~a~rp~~~l~~~k~~~~~~~~~~~~~~l-~~~~~ 659 (668)
T PLN02260 618 TLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESL-IKYVF 659 (668)
T ss_pred CHHHhhhHhhCCCccccccHHHHHHhCccccchHHHH-HHHHh
Confidence 3333222255667555899999999888778999999 65553
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=293.52 Aligned_cols=269 Identities=19% Similarity=0.263 Sum_probs=205.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-h-----------------hhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-R-----------------ASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-~-----------------~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
+.|||||||||||||++|+++|+++|++|+++..+... . +.+...+. ++|+|||+|+...
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~--~~D~ViHlAa~~~ 196 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILL--EVDQIYHLACPAS 196 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccccccc--CCCEEEECceecc
Confidence 45899999999999999999999999999986533111 0 11122233 7999999999762
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCC-----CCCCCCCCchhhh
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEE-----DTPNFVGSFYSKT 149 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~-----~~~~~~~~~Y~~~ 149 (302)
......++...++.|+.++.+++++|++.++++|++||++|||+... .+.+|+ ++..+ .+.|+.+
T Consensus 197 ---~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~------~p~~E~~~~~~~p~~p-~s~Yg~S 266 (436)
T PLN02166 197 ---PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLE------HPQKETYWGNVNPIGE-RSCYDEG 266 (436)
T ss_pred ---chhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCC------CCCCccccccCCCCCC-CCchHHH
Confidence 33444578899999999999999999999989999999999997543 334444 23333 4789999
Q ss_pred HHHHHHHHHhhc-----CceEEeeecccCCCCCC-----chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHh
Q 022112 150 KAMVEELLKNFE-----NVCTLRVRMPISSDLSN-----PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 150 K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
|..+|++++.+. +..++|++++||++... ...|+.+++.+.++. .+.++|+|++|++++++.+++
T Consensus 267 K~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~ 346 (436)
T PLN02166 267 KRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALME 346 (436)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHh
Confidence 999999987653 34899999999986421 135677777776643 246899999999999999998
Q ss_pred cCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHH
Q 022112 215 RNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYV 292 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~ 292 (302)
....|+||+++++.+|+.|+++.+++.+|.+.... +.... ........+|++|++++|| +..+|+++| +++
T Consensus 347 ~~~~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~-~~p~~-----~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl-~~~ 419 (436)
T PLN02166 347 GEHVGPFNLGNPGEFTMLELAEVVKETIDSSATIE-FKPNT-----ADDPHKRKPDISKAKELLNWEPKISLREGL-PLM 419 (436)
T ss_pred cCCCceEEeCCCCcEeHHHHHHHHHHHhCCCCCee-eCCCC-----CCCccccccCHHHHHHHcCCCCCCCHHHHH-HHH
Confidence 76678999999999999999999999999764421 11100 1111234789999999999 345999999 889
Q ss_pred hhchhhhc
Q 022112 293 FEPNKKTT 300 (302)
Q Consensus 293 ~~~~~~~~ 300 (302)
+++++.+.
T Consensus 420 i~~~~~~~ 427 (436)
T PLN02166 420 VSDFRNRI 427 (436)
T ss_pred HHHHHHHh
Confidence 88887654
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=278.03 Aligned_cols=273 Identities=19% Similarity=0.159 Sum_probs=207.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------------ecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------------SGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------------~~dl~~~~~~~~~~~~~~~d 64 (302)
|+||||||+||||++|+++|+++|++|+++ .+|++|.+.+.++++..++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 489999999999999999999999988762 36888888899999877789
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|||+|+... ......++....++|+.++.+++++|++.++ ++|++||+++||... ..++.|+.+..
T Consensus 81 ~ViH~Aa~~~---~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~ 151 (343)
T TIGR01472 81 EIYNLAAQSH---VKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQ------EIPQNETTPFY 151 (343)
T ss_pred EEEECCcccc---cchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCC------CCCCCCCCCCC
Confidence 9999999762 3344456778888999999999999998764 699999999999654 34567777766
Q ss_pred CCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc------hhhHHHHhcccc--c----ccccCCcccHh
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP------RNFITKITRYEK--V----VNIPNSMTILD 203 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~--~----~~~~~~~i~v~ 203 (302)
|. ++|+.+|..+|.+++.+.. ....|+..+||+..... ..++..+..+.. . ..+.++|+|++
T Consensus 152 p~-~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~ 230 (343)
T TIGR01472 152 PR-SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAK 230 (343)
T ss_pred CC-ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCceeHH
Confidence 55 8999999999999977643 25567777888753211 123444545542 1 13578999999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccccc--------------ccccce-eeecCCCCCc
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFT--------------LEEQAK-VIVAPRSNNE 268 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~--------------~~~~~~-~~~~~~~~~~ 268 (302)
|+|++++.+++++..++||+++++.+|++|+++.+.+.+|.+..+.... ...... ..........
T Consensus 231 D~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T TIGR01472 231 DYVEAMWLMLQQDKPDDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLL 310 (343)
T ss_pred HHHHHHHHHHhcCCCccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCCCccchhc
Confidence 9999999999876668999999999999999999999999765321100 000000 0111112346
Q ss_pred cCchhHHHhCC--CcchHHHHHHHHHhhchhh
Q 022112 269 LDASKLKTEFP--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 269 ~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~ 298 (302)
.|++|+++.|| +..+++|+| +++++++++
T Consensus 311 ~d~~k~~~~lgw~p~~~l~egi-~~~~~~~~~ 341 (343)
T TIGR01472 311 GDATKAKEKLGWKPEVSFEKLV-KEMVEEDLE 341 (343)
T ss_pred CCHHHHHHhhCCCCCCCHHHHH-HHHHHHHHh
Confidence 79999999999 556999999 889988874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=285.88 Aligned_cols=268 Identities=19% Similarity=0.249 Sum_probs=201.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC------------------hhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN------------------RASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~------------------~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
+.|||||||||||||++|++.|+++|++|+++..+... .+.+...+. ++|+|||+|+...
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~--~~D~ViHlAa~~~ 195 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILL--EVDQIYHLACPAS 195 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhc--CCCEEEEeeeecc
Confidence 45899999999999999999999999999985432111 011222333 7899999999762
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCC-----CCCCCCCchhhh
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEED-----TPNFVGSFYSKT 149 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~-----~~~~~~~~Y~~~ 149 (302)
......++...+++|+.++.+++++|++.++++|++||+.+|+.... .+..|+. +.. +.+.|+.+
T Consensus 196 ---~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~------~p~~E~~~~~~~P~~-~~s~Y~~S 265 (442)
T PLN02206 196 ---PVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ------HPQVETYWGNVNPIG-VRSCYDEG 265 (442)
T ss_pred ---hhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCC------CCCCccccccCCCCC-ccchHHHH
Confidence 33344578899999999999999999999989999999999986542 3344442 322 34789999
Q ss_pred HHHHHHHHHhhc-----CceEEeeecccCCCCCC-----chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHh
Q 022112 150 KAMVEELLKNFE-----NVCTLRVRMPISSDLSN-----PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 150 K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
|.++|+++..+. ...++|++++||++... ...|+..++.+.++. .+.++|+|++|+|++++.+++
T Consensus 266 K~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e 345 (442)
T PLN02206 266 KRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLME 345 (442)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHh
Confidence 999999987653 33899999999986321 134666666666533 246789999999999999998
Q ss_pred cCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHH
Q 022112 215 RNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYV 292 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~ 292 (302)
+...|+||+++++.+|+.|+++.+++.+|.+..+...+.. . .......+|++|+++++| +..+|+|+| +++
T Consensus 346 ~~~~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~~-~-----~~~~~~~~d~sKa~~~LGw~P~~~l~egl-~~~ 418 (442)
T PLN02206 346 GEHVGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT-E-----DDPHKRKPDITKAKELLGWEPKVSLRQGL-PLM 418 (442)
T ss_pred cCCCceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCCC-C-----CCccccccCHHHHHHHcCCCCCCCHHHHH-HHH
Confidence 7777899999999999999999999999866442111110 0 001134689999999999 445999999 888
Q ss_pred hhchhhh
Q 022112 293 FEPNKKT 299 (302)
Q Consensus 293 ~~~~~~~ 299 (302)
++++++.
T Consensus 419 ~~~~~~~ 425 (442)
T PLN02206 419 VKDFRQR 425 (442)
T ss_pred HHHHHHh
Confidence 8887653
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=276.27 Aligned_cols=274 Identities=16% Similarity=0.200 Sum_probs=203.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------eecCCC-ChhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------GSGRLE-NRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------~~~dl~-~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
||+|||||||||||++|+++|+++ |++|++ +.+|+. +.+.+.++++ ++|+|||+|+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~--~~d~ViH~aa~ 78 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVK--KCDVILPLVAI 78 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHc--CCCEEEECccc
Confidence 579999999999999999999986 688887 355775 5566777777 89999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC------CCCCCch
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP------NFVGSFY 146 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~------~~~~~~Y 146 (302)
. .+.....++...+++|+.++.+++++|++.+.++|++||+.+||... +.++.|++++ ..+.+.|
T Consensus 79 ~---~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~------~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 79 A---TPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCP------DEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred C---ChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCC------CcCcCccccccccCcCCCccchH
Confidence 6 23344567888999999999999999999887899999999998654 3345555432 1234689
Q ss_pred hhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-------c----hhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 147 SKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-------P----RNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-------~----~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
+.+|..+|+.++.+. +.+++|++.+||++... . ..++..++.+.++. .+.++|+|++|+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~ 229 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDG 229 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHH
Confidence 999999999987653 34999999999986321 1 13455555665422 246799999999
Q ss_pred HHHHHHHHhcC----CCCeEEecCC-CccCHHHHHHHHHhhcCCCCccc------ccccccccee---eecCCCCCccCc
Q 022112 206 LPISIEMAKRN----LTGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWK------NFTLEEQAKV---IVAPRSNNELDA 271 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~------~~~~~~~~~~---~~~~~~~~~~d~ 271 (302)
+++++.+++++ .+++||++++ ..+|++|+++.+.+.+|....+. .+........ ..........|+
T Consensus 230 a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 309 (347)
T PRK11908 230 IDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKI 309 (347)
T ss_pred HHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccCCh
Confidence 99999999864 2469999997 58999999999999998543220 0000000000 001112345689
Q ss_pred hhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 272 SKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 272 ~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+|+++.|| +..+++++| +++++++++.
T Consensus 310 ~k~~~~lGw~p~~~l~~~l-~~~~~~~~~~ 338 (347)
T PRK11908 310 DNTMQELGWAPKTTMDDAL-RRIFEAYRGH 338 (347)
T ss_pred HHHHHHcCCCCCCcHHHHH-HHHHHHHHHH
Confidence 99999999 556999999 8888887654
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=276.65 Aligned_cols=277 Identities=18% Similarity=0.213 Sum_probs=207.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------ecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------SGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..+..|+|||||||||||++|+++|.++||+|+++ .+|+.+.+.+..++. ++|+|||+|+
T Consensus 17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~Aa 94 (370)
T PLN02695 17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNLAA 94 (370)
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHh--CCCEEEEccc
Confidence 34456899999999999999999999999999873 247777777777777 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCC-CCCCCCchhhh
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDT-PNFVGSFYSKT 149 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~-~~~~~~~Y~~~ 149 (302)
..+ .......++...+..|+.++.+++++|++.+++ ||++||..+|+.....+. +.++.|++. +..+.+.|+.+
T Consensus 95 ~~~--~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~--~~~~~E~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 95 DMG--GMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLET--NVSLKESDAWPAEPQDAYGLE 170 (370)
T ss_pred ccC--CccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCc--CCCcCcccCCCCCCCCHHHHH
Confidence 652 111122345566789999999999999999884 999999999996542111 234666652 33344899999
Q ss_pred HHHHHHHHHhhcC-----ceEEeeecccCCCCCC-------chhhHHHHhcc-cccc-----cccCCcccHhhHHHHHHH
Q 022112 150 KAMVEELLKNFEN-----VCTLRVRMPISSDLSN-------PRNFITKITRY-EKVV-----NIPNSMTILDELLPISIE 211 (302)
Q Consensus 150 K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~-------~~~~~~~~~~~-~~~~-----~~~~~~i~v~D~a~~~~~ 211 (302)
|..+|++++.+.. .+++|++++||++... +..|+..++.. .++. .+.++|+|++|++++++.
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~ 250 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLR 250 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHH
Confidence 9999999866532 3899999999986421 23566666653 2221 246789999999999999
Q ss_pred HHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 212 MAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
+++....++||+++++.+|++|+++.+.+..|.+.+....+. ........+|++|+++.|| +..+|+++|
T Consensus 251 ~~~~~~~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~-------~~~~~~~~~d~sk~~~~lgw~p~~~l~e~i- 322 (370)
T PLN02695 251 LTKSDFREPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPG-------PEGVRGRNSDNTLIKEKLGWAPTMRLKDGL- 322 (370)
T ss_pred HHhccCCCceEecCCCceeHHHHHHHHHHHhCCCCCceecCC-------CCCccccccCHHHHHHhcCCCCCCCHHHHH-
Confidence 888766789999999999999999999999987544221111 0111234589999999999 445899999
Q ss_pred HHHhhchhhhc
Q 022112 290 KYVFEPNKKTT 300 (302)
Q Consensus 290 ~~~~~~~~~~~ 300 (302)
+++++|++++.
T Consensus 323 ~~~~~~~~~~~ 333 (370)
T PLN02695 323 RITYFWIKEQI 333 (370)
T ss_pred HHHHHHHHHHH
Confidence 88888877653
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=277.22 Aligned_cols=280 Identities=18% Similarity=0.205 Sum_probs=200.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-------------------------ecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-------------------------SGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-------------------------~~dl~~~~~~~~~~~~~~~d~V 66 (302)
+.|||||||||||||++|++.|+++ |++|+++ .+|+.|.+.+.++++ ++|+|
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~--~~d~V 90 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK--MADLT 90 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh--cCCEE
Confidence 5679999999999999999999998 5887763 357778888888888 79999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCC---------CCCC
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGF---------KEED 137 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~---------~e~~ 137 (302)
||+|+... ......++...+..|+.++.+++++|++.+.++|++||.++||.....+..++.|. .|+.
T Consensus 91 iHlAa~~~---~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~ 167 (386)
T PLN02427 91 INLAAICT---PADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDE 167 (386)
T ss_pred EEcccccC---hhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcccccccccccccccccc
Confidence 99999762 22333456677789999999999999988867999999999996532222112222 2221
Q ss_pred CCC------CCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC------c----hh----hHHHHhccccc
Q 022112 138 TPN------FVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN------P----RN----FITKITRYEKV 192 (302)
Q Consensus 138 ~~~------~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~------~----~~----~~~~~~~~~~~ 192 (302)
.+. .+.+.|+.+|.++|++++.+. +.+++||+++||++... + .. ++..++.+.++
T Consensus 168 ~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 247 (386)
T PLN02427 168 SPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPL 247 (386)
T ss_pred cccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCe
Confidence 111 123689999999999997653 33999999999986321 1 12 33455555543
Q ss_pred c-----cccCCcccHhhHHHHHHHHHhcC---CCCeEEecCC-CccCHHHHHHHHHhhcCCCCcc-------cccccccc
Q 022112 193 V-----NIPNSMTILDELLPISIEMAKRN---LTGIWNFTNP-GVVSHNEILEMYRQYIDPNFTW-------KNFTLEEQ 256 (302)
Q Consensus 193 ~-----~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~-------~~~~~~~~ 256 (302)
. .+.++|+|++|+|++++.+++++ .+++||++++ +.+|+.|+++.+.+.+|..... ........
T Consensus 248 ~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 327 (386)
T PLN02427 248 KLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEF 327 (386)
T ss_pred EEECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCcccc
Confidence 2 24579999999999999999874 2459999997 5999999999999999852110 00110000
Q ss_pred ceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhh
Q 022112 257 AKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 257 ~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~ 298 (302)
.............|.+|++++|| +..+++++| +++++|+++
T Consensus 328 ~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl-~~~~~~~~~ 370 (386)
T PLN02427 328 YGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLL-ESTLTYQHK 370 (386)
T ss_pred cCccccchhhccCCHHHHHHhcCCCcCccHHHHH-HHHHHHHHH
Confidence 00000111244679999999999 557999999 888888765
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=273.26 Aligned_cols=278 Identities=16% Similarity=0.109 Sum_probs=209.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
||+|||||||||||++|++.|+++|+++++ +.+|++|.+++.+++++.++|+|||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999987442 2468888888999888767999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---------CC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---------GL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+||.. .......++..++++|+.++.+++++|++. ++ ++|++||.++|+..... ..+++|+.+
T Consensus 81 ~A~~~---~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~----~~~~~E~~~ 153 (355)
T PRK10217 81 LAAES---HVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHST----DDFFTETTP 153 (355)
T ss_pred CCccc---CcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCC----CCCcCCCCC
Confidence 99976 233445677899999999999999999863 33 59999999999854211 345677766
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
..|. +.|+.+|..+|.+++.+. +.+++|++++||+..... ..++..+..+.++. .+.++|+|++|+
T Consensus 154 ~~p~-s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~ 232 (355)
T PRK10217 154 YAPS-SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDH 232 (355)
T ss_pred CCCC-ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHH
Confidence 6554 899999999999987653 348999999999875321 23455555555422 357899999999
Q ss_pred HHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCcccccccc----cc--ceeeecCCCCCccCchhHHHhC
Q 022112 206 LPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLE----EQ--AKVIVAPRSNNELDASKLKTEF 278 (302)
Q Consensus 206 a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~----~~--~~~~~~~~~~~~~d~~k~~~~l 278 (302)
+++++.+++... +++||+++++.+|++|+++.+.+.+|......+.... .. ............+|++|+++.|
T Consensus 233 a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 312 (355)
T PRK10217 233 ARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKIAREL 312 (355)
T ss_pred HHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHHHHhc
Confidence 999999988753 4699999999999999999999999853221111000 00 0001111124578999999999
Q ss_pred C--CcchHHHHHHHHHhhchhhhc
Q 022112 279 P--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 279 g--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
| +..+++|+| ++++++++.+.
T Consensus 313 g~~p~~~l~e~l-~~~~~~~~~~~ 335 (355)
T PRK10217 313 GWLPQETFESGM-RKTVQWYLANE 335 (355)
T ss_pred CCCCcCcHHHHH-HHHHHHHHhCH
Confidence 9 456999999 89988887654
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=264.50 Aligned_cols=268 Identities=21% Similarity=0.239 Sum_probs=208.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHh
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 92 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n 92 (302)
||||||||||||++++++|+++|++|+++ .+|+.+.+.+.++++..++|+|||+|+... .......+...+++|
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~---~~~~~~~~~~~~~~n 77 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAYTD---VDGAESDPEKAFAVN 77 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcccc---ccccccCHHHHHHHH
Confidence 58999999999999999999999999884 458999999999999777899999999762 333344677888999
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-cCceEEeeecc
Q 022112 93 VVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMP 171 (302)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v 171 (302)
+.++.+++++|++.+.++|++||.++|++.. +.+++|++++.+. +.|+.+|..+|+.++.+ .+.+++||+++
T Consensus 78 ~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~------~~~~~E~~~~~~~-~~Y~~~K~~~E~~~~~~~~~~~ilR~~~v 150 (287)
T TIGR01214 78 ALAPQNLARAAARHGARLVHISTDYVFDGEG------KRPYREDDATNPL-NVYGQSKLAGEQAIRAAGPNALIVRTSWL 150 (287)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeeeeecCCC------CCCCCCCCCCCCc-chhhHHHHHHHHHHHHhCCCeEEEEeeec
Confidence 9999999999999888899999999998654 5577888877665 89999999999998765 45699999999
Q ss_pred cCCCCCC--chhhHHHHhcccccc---cccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCccCHHHHHHHHHhhcCC
Q 022112 172 ISSDLSN--PRNFITKITRYEKVV---NIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVVSHNEILEMYRQYIDP 244 (302)
Q Consensus 172 ~g~~~~~--~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 244 (302)
||+.... ...++..+..+.++. +..++++|++|+|+++..+++.+ .+++||+++++.+|+.|+++.+.+.+|.
T Consensus 151 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~ 230 (287)
T TIGR01214 151 YGGGGGRNFVRTMLRLAGRGEELRVVDDQIGSPTYAKDLARVIAALLQRLARARGVYHLANSGQCSWYEFAQAIFEEAGA 230 (287)
T ss_pred ccCCCCCCHHHHHHHHhhcCCCceEecCCCcCCcCHHHHHHHHHHHHhhccCCCCeEEEECCCCcCHHHHHHHHHHHhCc
Confidence 9986311 112344444444322 34678999999999999999874 4689999999999999999999999997
Q ss_pred CCcccccc---c-cccceeeecCC-CCCccCchhHHHhCC-CcchHHHHHHHHHhh
Q 022112 245 NFTWKNFT---L-EEQAKVIVAPR-SNNELDASKLKTEFP-ELLSIKESLIKYVFE 294 (302)
Q Consensus 245 ~~~~~~~~---~-~~~~~~~~~~~-~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~ 294 (302)
+......+ . ..........+ ....+|++|+++++| ++++|+++| .++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~~~~~~~l-~~~~~ 285 (287)
T TIGR01214 231 DGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPLPHWREAL-RAYLQ 285 (287)
T ss_pred ccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCCccHHHHH-HHHHh
Confidence 64311111 0 00000111111 345799999999999 678999999 66654
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=275.90 Aligned_cols=280 Identities=14% Similarity=0.093 Sum_probs=202.6
Q ss_pred CCCCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------------------ec
Q 022112 8 SDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------------------SG 46 (302)
Q Consensus 8 ~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------------------~~ 46 (302)
++...++|+||||||+||||++|+++|+++|++|+++ .+
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~ 120 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVG 120 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEEC
Confidence 3444567899999999999999999999999888762 36
Q ss_pred CCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhh---hHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccC
Q 022112 47 RLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES---HKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEY 121 (302)
Q Consensus 47 dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~---~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~ 121 (302)
|++|.+.+.+++++.++|+|||+|+... ...... ++...+++|+.++.+++++|++.++ ++|++||+.+||.
T Consensus 121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~---~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~ 197 (442)
T PLN02572 121 DICDFEFLSEAFKSFEPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGT 197 (442)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCccc---ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCC
Confidence 7888888999998778999999998652 222222 3356678999999999999999886 5999999999986
Q ss_pred CCCCCCCCCCCCC------CCC---CCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCC---------
Q 022112 122 DSGHPLGSGIGFK------EED---TPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSN--------- 178 (302)
Q Consensus 122 ~~~~~~~~~~~~~------e~~---~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~--------- 178 (302)
.. .|+. +.+++ |++ +..| .++|+.+|.++|.+++.+.+ .+++|++++||++...
T Consensus 198 ~~-~~~~-E~~i~~~~~~~e~~~~~~~~P-~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~ 274 (442)
T PLN02572 198 PN-IDIE-EGYITITHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELIN 274 (442)
T ss_pred CC-CCCc-ccccccccccccccccCCCCC-CCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCccccccccccc
Confidence 42 2221 11221 232 3333 48999999999999877643 2899999999986321
Q ss_pred -----------chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcC-C-C--CeEEecCCCccCHHHHHHHH
Q 022112 179 -----------PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRN-L-T--GIWNFTNPGVVSHNEILEMY 238 (302)
Q Consensus 179 -----------~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~-~-~--~~~~~~~~~~~s~~e~~~~~ 238 (302)
...|+..+..+.++. .+.++|+||+|++++++.+++++ . + ++||+++ +.+|+.|+++.+
T Consensus 275 ~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs-~~~si~el~~~i 353 (442)
T PLN02572 275 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFT-EQFSVNELAKLV 353 (442)
T ss_pred ccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCC-CceeHHHHHHHH
Confidence 113445555565432 35689999999999999999864 2 2 3899987 789999999999
Q ss_pred Hhh---cCCCCccccccccccceeeecCCCCCccCchhHHHhCC--Ccc---hHHHHHHHHHhhchhhhc
Q 022112 239 RQY---IDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELL---SIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 239 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~---~~~e~i~~~~~~~~~~~~ 300 (302)
.+. +|.+..+...+... ..........|++|+++ || +.. ++.++| ..+++|+|++.
T Consensus 354 ~~~~~~~g~~~~~~~~p~~~----~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l-~~~~~~~~~~~ 417 (442)
T PLN02572 354 TKAGEKLGLDVEVISVPNPR----VEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSL-LNFAVKYKDRV 417 (442)
T ss_pred HHHHHhhCCCCCeeeCCCCc----ccccccccCccHHHHHH-cCCCCCCcHHHHHHHH-HHHHHHHHhhc
Confidence 999 88665432111110 01111244679999986 89 334 788888 78888887653
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=266.13 Aligned_cols=270 Identities=16% Similarity=0.118 Sum_probs=205.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------ecCCCChhhHHHHHhhcCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------SGRLENRASLEADIAAVKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------~~dl~~~~~~~~~~~~~~~ 63 (302)
++|+||||||+||||++|+++|+++|++|+++ .+|++|.+.+.++++..++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 84 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKP 84 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCC
Confidence 45799999999999999999999999988752 3688888889999987789
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC------eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL------ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+.. .......++...+++|+.++.+++++|++.++ ++|++||+++||... .++.|+.
T Consensus 85 d~Vih~A~~~---~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~-------~~~~E~~ 154 (340)
T PLN02653 85 DEVYNLAAQS---HVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTP-------PPQSETT 154 (340)
T ss_pred CEEEECCccc---chhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCC-------CCCCCCC
Confidence 9999999976 23344567788889999999999999998874 689999999999653 2567777
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCc--hh----hHHHHhccccc--c----cccCCcc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNP--RN----FITKITRYEKV--V----NIPNSMT 200 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~--~~----~~~~~~~~~~~--~----~~~~~~i 200 (302)
+..|. +.|+.+|.++|.+++.+... ...|+..+||+..... .. ++..+..+... . .+.++|+
T Consensus 155 ~~~p~-~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i 233 (340)
T PLN02653 155 PFHPR-SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWG 233 (340)
T ss_pred CCCCC-ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceecce
Confidence 77655 89999999999999776433 4567777788753211 11 23344445432 1 3468999
Q ss_pred cHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCc-cccccccccceeeecCCCCCccCchhHHHhCC
Q 022112 201 ILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFT-WKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
|++|+|++++.++++..++.||+++++.+|++|+++.+.+.+|.+.. ...+... ...........+|++|+++.||
T Consensus 234 ~v~D~a~a~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~d~~k~~~~lg 310 (340)
T PLN02653 234 FAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPR---YFRPAEVDNLKGDASKAREVLG 310 (340)
T ss_pred eHHHHHHHHHHHHhcCCCCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcc---cCCccccccccCCHHHHHHHhC
Confidence 99999999999998766689999999999999999999999986421 0111100 0011111244689999999999
Q ss_pred --CcchHHHHHHHHHhhchh
Q 022112 280 --ELLSIKESLIKYVFEPNK 297 (302)
Q Consensus 280 --~~~~~~e~i~~~~~~~~~ 297 (302)
+..+++|+| ++++++.+
T Consensus 311 w~p~~~l~~gi-~~~~~~~~ 329 (340)
T PLN02653 311 WKPKVGFEQLV-KMMVDEDL 329 (340)
T ss_pred CCCCCCHHHHH-HHHHHHHH
Confidence 445899999 88887655
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=264.27 Aligned_cols=268 Identities=17% Similarity=0.159 Sum_probs=203.5
Q ss_pred EEEcCCcchHHHHHHHHHhCCCcEEE----eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhH
Q 022112 18 LIYGRTGWIGGLLGKLCQAQSIDFTY----GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNV 93 (302)
Q Consensus 18 lItGatG~iG~~l~~~L~~~g~~V~~----~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~ 93 (302)
||||||||||++|+++|++.|++|++ ..+|+++.+++.++++..++|+|||||+..+ .......++..+++.|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~~~~~~~n~ 78 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVILAAAKVG--GIHANMTYPADFIRENL 78 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccccCCCCCHHHHHHHHhccCCCEEEEeeeeec--ccchhhhCcHHHHHHHh
Confidence 69999999999999999999998776 5789999999999999888999999999752 12234456778899999
Q ss_pred HHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCC----CCCCCCCchhhhHHHHHHHHHhhc-----Cc
Q 022112 94 VGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEED----TPNFVGSFYSKTKAMVEELLKNFE-----NV 163 (302)
Q Consensus 94 ~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~----~~~~~~~~Y~~~K~~~E~~~~~~~-----~~ 163 (302)
.++.+++++|++.+++ +|++||+.||+... ..+++|++ +..|....|+.+|..+|++++.+. +.
T Consensus 79 ~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~------~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~ 152 (306)
T PLN02725 79 QIQTNVIDAAYRHGVKKLLFLGSSCIYPKFA------PQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDA 152 (306)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCceeecCCCC------CCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCE
Confidence 9999999999999875 99999999999654 45667765 333432359999999998876542 34
Q ss_pred eEEeeecccCCCCCCc-------hhhHHHH----hcccccc------cccCCcccHhhHHHHHHHHHhcC-CCCeEEecC
Q 022112 164 CTLRVRMPISSDLSNP-------RNFITKI----TRYEKVV------NIPNSMTILDELLPISIEMAKRN-LTGIWNFTN 225 (302)
Q Consensus 164 ~~lR~~~v~g~~~~~~-------~~~~~~~----~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~ 225 (302)
+++||+.+||+..... +.++..+ ..+.+.. ...++|+|++|++++++.+++.. ..+.||+++
T Consensus 153 ~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~~~~~ni~~ 232 (306)
T PLN02725 153 ISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGAEHVNVGS 232 (306)
T ss_pred EEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccccCcceEeCC
Confidence 9999999999864211 1223222 2233221 23569999999999999999864 346899999
Q ss_pred CCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhcC
Q 022112 226 PGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 226 ~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~~ 301 (302)
++.+|+.|+++.+++.+|.+..+..... .........+|++|+++ +| +..+|+|+| ++++++++++.+
T Consensus 233 ~~~~s~~e~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l-~~~~~~~~~~~~ 302 (306)
T PLN02725 233 GDEVTIKELAELVKEVVGFEGELVWDTS------KPDGTPRKLMDSSKLRS-LGWDPKFSLKDGL-QETYKWYLENYE 302 (306)
T ss_pred CCcccHHHHHHHHHHHhCCCCceeecCC------CCCcccccccCHHHHHH-hCCCCCCCHHHHH-HHHHHHHHhhhh
Confidence 9999999999999999987643211110 01111234689999975 88 446999999 999998887763
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=287.43 Aligned_cols=277 Identities=14% Similarity=0.147 Sum_probs=206.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------eecCCCChhh-HHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------GSGRLENRAS-LEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------~~~dl~~~~~-~~~~~~~~~~d~Vi~~a~ 71 (302)
.+|+|||||||||||++|+++|+++ ||+|++ +.+|++|... +.++++ ++|+|||+|+
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~--~~D~ViHlAa 391 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIK--KCDVVLPLVA 391 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhc--CCCEEEECcc
Confidence 4679999999999999999999985 799886 3567777554 456676 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC------CCCCCc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP------NFVGSF 145 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~------~~~~~~ 145 (302)
... ......++...+++|+.++.+++++|++.+.++||+||+++||... +.+++|+++. ..+.+.
T Consensus 392 ~~~---~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~------~~~~~E~~~~~~~~p~~~p~s~ 462 (660)
T PRK08125 392 IAT---PIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCT------DKYFDEDTSNLIVGPINKQRWI 462 (660)
T ss_pred ccC---chhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCC------CCCcCccccccccCCCCCCccc
Confidence 763 3334557788899999999999999999987799999999999643 3355666532 123368
Q ss_pred hhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-----------chhhHHHHhcccccc-----cccCCcccHhh
Q 022112 146 YSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-----------PRNFITKITRYEKVV-----NIPNSMTILDE 204 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~i~v~D 204 (302)
|+.+|.++|++++.+. +.+++|++++||++... ...++..+..+.++. .+.++|+|++|
T Consensus 463 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~D 542 (660)
T PRK08125 463 YSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRD 542 (660)
T ss_pred hHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHH
Confidence 9999999999997764 23899999999986421 123555666555432 25689999999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCC-ccCHHHHHHHHHhhcCCCCccccccccc----cce-e----eecCCCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPG-VVSHNEILEMYRQYIDPNFTWKNFTLEE----QAK-V----IVAPRSNNELD 270 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~-~~s~~e~~~~~~~~~g~~~~~~~~~~~~----~~~-~----~~~~~~~~~~d 270 (302)
+|++++.+++++ .+++||+++++ .+|++|+++.+.+.+|.+.....++... ... . .........+|
T Consensus 543 va~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 622 (660)
T PRK08125 543 GIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKPS 622 (660)
T ss_pred HHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccCCC
Confidence 999999999864 24599999985 7999999999999998542111111100 000 0 00011234689
Q ss_pred chhHHHhCC--CcchHHHHHHHHHhhchhhhcC
Q 022112 271 ASKLKTEFP--ELLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 271 ~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~~ 301 (302)
++|+++.|| +..+++|+| ++++++++++.+
T Consensus 623 ~~ka~~~LGw~P~~~lee~l-~~~i~~~~~~~~ 654 (660)
T PRK08125 623 IRNARRLLDWEPKIDMQETI-DETLDFFLRTVD 654 (660)
T ss_pred hHHHHHHhCCCCCCcHHHHH-HHHHHHHHhccc
Confidence 999999999 456999999 999999887653
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=263.77 Aligned_cols=273 Identities=21% Similarity=0.259 Sum_probs=207.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
+|+||||||+||||+++++.|+++|++|++ +.+|+++.+++.+++++.++|+|||+|
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A 83 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLA 83 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEECC
Confidence 579999999999999999999999999875 356888888898988877899999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
+.. .......++...+++|+.++.+++++|++.+ + ++|++||..+|+.... ..++.|+.+..|. ++|+.
T Consensus 84 ~~~---~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~-----~~~~~e~~~~~p~-~~Y~~ 154 (349)
T TIGR02622 84 AQP---LVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEW-----VWGYRETDPLGGH-DPYSS 154 (349)
T ss_pred ccc---ccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCC-----CCCCccCCCCCCC-Ccchh
Confidence 965 2444556788899999999999999999876 4 5999999999986421 2356676665544 89999
Q ss_pred hHHHHHHHHHhhc------------CceEEeeecccCCCCCCc----hhhHHHHhcccccc----cccCCcccHhhHHHH
Q 022112 149 TKAMVEELLKNFE------------NVCTLRVRMPISSDLSNP----RNFITKITRYEKVV----NIPNSMTILDELLPI 208 (302)
Q Consensus 149 ~K~~~E~~~~~~~------------~~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~ 208 (302)
+|..+|.+++.+. +..++||+.+||++.... +.++..+..+..+. .+.++|+|++|+|++
T Consensus 155 sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~rd~i~v~D~a~a 234 (349)
T TIGR02622 155 SKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIRNPDATRPWQHVLEPLSG 234 (349)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEECCCCcccceeeHHHHHHH
Confidence 9999999986642 237899999999864222 34566666665432 367899999999999
Q ss_pred HHHHHhc------CCCCeEEecCC--CccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHHhCC
Q 022112 209 SIEMAKR------NLTGIWNFTNP--GVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 209 ~~~~~~~------~~~~~~~~~~~--~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
++.++++ ..+++||++++ +++++.|+++.+.+.++. +..+.. ... ...........+|++|++++||
T Consensus 235 ~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~k~~~~lg 310 (349)
T TIGR02622 235 YLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWED---DSD-LNHPHEARLLKLDSSKARTLLG 310 (349)
T ss_pred HHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceee---ccC-CCCCcccceeecCHHHHHHHhC
Confidence 9988764 12579999975 799999999999987653 322211 000 0001111235789999999999
Q ss_pred --CcchHHHHHHHHHhhchhhhc
Q 022112 280 --ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 280 --~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+..+++++| +++++|+++..
T Consensus 311 w~p~~~l~~gi-~~~i~w~~~~~ 332 (349)
T TIGR02622 311 WHPRWGLEEAV-SRTVDWYKAWL 332 (349)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHh
Confidence 555999999 99999887654
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=261.88 Aligned_cols=263 Identities=11% Similarity=0.164 Sum_probs=191.0
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEee--------------cCCCChhhHHHHHhh-------cCCCEEEEccccCCC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGS--------------GRLENRASLEADIAA-------VKPTHVFNAAGVTGR 75 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~--------------~dl~~~~~~~~~~~~-------~~~d~Vi~~a~~~~~ 75 (302)
|||||||||||++|+++|+++|++++++. +|+.|..+..+.++. .++|+|||+|+..+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~- 80 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGACSS- 80 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECceecC-
Confidence 89999999999999999999999766532 233333222222221 16999999999652
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
. ...++...++.|+.++.+++++|++.++++|++||.++|+... +.+..|+.+..|. +.|+.+|..+|+
T Consensus 81 --~--~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~ 149 (308)
T PRK11150 81 --T--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRT------DDFIEEREYEKPL-NVYGYSKFLFDE 149 (308)
T ss_pred --C--cCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCC------CCCCccCCCCCCC-CHHHHHHHHHHH
Confidence 1 1224556789999999999999999998999999999999653 3345566655555 899999999999
Q ss_pred HHHhhc-----CceEEeeecccCCCCCCch-------hhHHHHhccccc--c----cccCCcccHhhHHHHHHHHHhcCC
Q 022112 156 LLKNFE-----NVCTLRVRMPISSDLSNPR-------NFITKITRYEKV--V----NIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 156 ~~~~~~-----~~~~lR~~~v~g~~~~~~~-------~~~~~~~~~~~~--~----~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
.++.+. +.+++|++++||+...... .+...+.++... . ...++|+|++|+|++++.++++..
T Consensus 150 ~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~ 229 (308)
T PRK11150 150 YVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV 229 (308)
T ss_pred HHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC
Confidence 987763 2389999999998642211 233556665432 2 135799999999999999998776
Q ss_pred CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCC-CCCccCchhHHHhCCC--c-chHHHHHHHHHh
Q 022112 218 TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFPE--L-LSIKESLIKYVF 293 (302)
Q Consensus 218 ~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg~--~-~~~~e~i~~~~~ 293 (302)
+++||+++++.+|+.|+++.+.+.+|.. .+...+.+.. ..... ....+|++|+++ +|| . ++|+++| ++++
T Consensus 230 ~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~d~~k~~~-~g~~p~~~~~~~gl-~~~~ 303 (308)
T PRK11150 230 SGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDK---LKGRYQAFTQADLTKLRA-AGYDKPFKTVAEGV-AEYM 303 (308)
T ss_pred CCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccc---cccccceecccCHHHHHh-cCCCCCCCCHHHHH-HHHH
Confidence 7899999999999999999999999853 1111111110 00011 134689999987 693 2 4899999 9998
Q ss_pred hchh
Q 022112 294 EPNK 297 (302)
Q Consensus 294 ~~~~ 297 (302)
+|+.
T Consensus 304 ~~~~ 307 (308)
T PRK11150 304 AWLN 307 (308)
T ss_pred HHhh
Confidence 8864
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=266.19 Aligned_cols=281 Identities=15% Similarity=0.138 Sum_probs=206.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEE------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTY------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|||||||||||||++|+++|+++|++ |+. +.+|++|.+++.+++.+.++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 68999999999999999999999865 321 46789999999999987789999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---------CC-eEEEEcCCccccCCCC-CCC-C--CCCCCCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---------GL-ILINYATGCIFEYDSG-HPL-G--SGIGFKE 135 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~-~~v~~SS~~vy~~~~~-~~~-~--~~~~~~e 135 (302)
|+... ......++..++++|+.++.+++++|++. ++ ++|++||.++|+.... ... + +..++.|
T Consensus 81 A~~~~---~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 81 AAESH---VDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred CcccC---CcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 99762 33344567889999999999999999874 33 5999999999986321 000 0 0124677
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTIL 202 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v 202 (302)
+++..|. +.|+.+|..+|.+++.++ ..+++|++.+||+..... ..++..+..+..+. .+.++|+|+
T Consensus 158 ~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (352)
T PRK10084 158 TTAYAPS-SPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236 (352)
T ss_pred cCCCCCC-ChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEeCCCCeEEeeEEH
Confidence 7776655 899999999999987653 238899999999875322 23445555554321 357899999
Q ss_pred hhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCcc-cccccccc-ceeeecCCCCCccCchhHHHhCC
Q 022112 203 DELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW-KNFTLEEQ-AKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 203 ~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
+|+|++++.++++. .+++||+++++.+|+.|+++.+++.+|...+. ..+..... ............+|++|+++.+|
T Consensus 237 ~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (352)
T PRK10084 237 EDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDASKISRELG 316 (352)
T ss_pred HHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCCCceeeeCHHHHHHHcC
Confidence 99999999988865 35799999999999999999999999853221 01100000 00011111234689999999999
Q ss_pred --CcchHHHHHHHHHhhchhhhc
Q 022112 280 --ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 280 --~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+..+++++| ++++++++++.
T Consensus 317 ~~p~~~l~~~l-~~~~~~~~~~~ 338 (352)
T PRK10084 317 WKPQETFESGI-RKTVEWYLANT 338 (352)
T ss_pred CCCcCCHHHHH-HHHHHHHHhCH
Confidence 446999999 88888887654
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=246.79 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=216.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTY------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
+++|||||+||||++.+..+...- +..+. +.+|+.+...+...++...+|.|+|
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 589999999999999999999763 22111 7888888888888888889999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
+|+.+ +++.+..++..+...|+.++..|+++++.. +++ |||+||..|||+... ++...|...+.|. ++|
T Consensus 87 faa~t---~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~-----~~~~~E~s~~nPt-npy 157 (331)
T KOG0747|consen 87 FAAQT---HVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE-----DAVVGEASLLNPT-NPY 157 (331)
T ss_pred hHhhh---hhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccc-----cccccccccCCCC-Cch
Confidence 99998 688999999999999999999999999998 455 999999999998863 2222377778877 999
Q ss_pred hhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHH
Q 022112 147 SKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~ 213 (302)
+.+|+++|+.+++|-.. +++|.++||||+.+.. +.|+....++.+.. .+.++|+|++|+++++.+++
T Consensus 158 AasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~ 237 (331)
T KOG0747|consen 158 AASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVL 237 (331)
T ss_pred HHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHH
Confidence 99999999999887543 8899999999987543 34666555655532 26789999999999999999
Q ss_pred hcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCC----CCccCchhHHHhCC--CcchHHH
Q 022112 214 KRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRS----NNELDASKLKTEFP--ELLSIKE 286 (302)
Q Consensus 214 ~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~k~~~~lg--~~~~~~e 286 (302)
+++. +++|||++...++..|+++.+.+.++....-. ...... .....|+ ...++.+|++ .|| +.++|++
T Consensus 238 ~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~--~~~p~~-~~v~dRp~nd~Ry~~~~eKik-~LGw~~~~p~~e 313 (331)
T KOG0747|consen 238 EKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNI--DTEPFI-FFVEDRPYNDLRYFLDDEKIK-KLGWRPTTPWEE 313 (331)
T ss_pred hcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCC--CCCCcc-eecCCCCcccccccccHHHHH-hcCCcccCcHHH
Confidence 9875 67999999999999999999999887642211 111110 1122332 3479999999 588 5678999
Q ss_pred HHHHHHhhchhhhc
Q 022112 287 SLIKYVFEPNKKTT 300 (302)
Q Consensus 287 ~i~~~~~~~~~~~~ 300 (302)
+| +.+++++.++.
T Consensus 314 GL-rktie~y~~~~ 326 (331)
T KOG0747|consen 314 GL-RKTIEWYTKNF 326 (331)
T ss_pred HH-HHHHHHHHhhh
Confidence 99 88888886653
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=244.96 Aligned_cols=275 Identities=20% Similarity=0.247 Sum_probs=217.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC------------------CCChhhHHHHHhhcCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR------------------LENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d------------------l~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
...+||+||||.||||+||++.|..+||+|+++..- +.-.+-+..++. .+|.|+|+|+..
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~--evD~IyhLAapa 102 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLK--EVDQIYHLAAPA 102 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhHHHH--HhhhhhhhccCC
Confidence 345799999999999999999999999999982211 111122345566 789999999998
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~ 153 (302)
+ +..-..+|..++..|..++.+++..|++.+.||+++||+.|||+...+|.. +.++..-.+..| ...|+..|+.+
T Consensus 103 s---p~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~-e~ywg~vnpigp-r~cydegKr~a 177 (350)
T KOG1429|consen 103 S---PPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQV-ETYWGNVNPIGP-RSCYDEGKRVA 177 (350)
T ss_pred C---CcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCc-cccccccCcCCc-hhhhhHHHHHH
Confidence 4 444566888999999999999999999999999999999999997766653 333333344444 48999999999
Q ss_pred HHHHHhhcCc-----eEEeeecccCCCCC-----CchhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcCCC
Q 022112 154 EELLKNFENV-----CTLRVRMPISSDLS-----NPRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRNLT 218 (302)
Q Consensus 154 E~~~~~~~~~-----~~lR~~~v~g~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~~ 218 (302)
|.++..|.+. .|.|+-+.|||... ...+|+.+.+++.+.. .+.|+|.|+.|+.+.++++++.+..
T Consensus 178 E~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~ 257 (350)
T KOG1429|consen 178 ETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR 257 (350)
T ss_pred HHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc
Confidence 9999887554 88999999998632 1247888999888743 3789999999999999999999888
Q ss_pred CeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhch
Q 022112 219 GIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 219 ~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~ 296 (302)
+.+|+++++.+|+.|+++.+.++.+....+.......++ +. ...-|++++++.|| +..+++|+| +.++.++
T Consensus 258 ~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Dd---p~---kR~pDit~ake~LgW~Pkv~L~egL-~~t~~~f 330 (350)
T KOG1429|consen 258 GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDD---PR---KRKPDITKAKEQLGWEPKVSLREGL-PLTVTYF 330 (350)
T ss_pred CCcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCC---cc---ccCccHHHHHHHhCCCCCCcHHHhh-HHHHHHH
Confidence 899999999999999999999999766554332221111 11 23679999999999 667999999 9888887
Q ss_pred hhhc
Q 022112 297 KKTT 300 (302)
Q Consensus 297 ~~~~ 300 (302)
+.+.
T Consensus 331 r~~i 334 (350)
T KOG1429|consen 331 RERI 334 (350)
T ss_pred HHHH
Confidence 7654
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=261.07 Aligned_cols=270 Identities=16% Similarity=0.183 Sum_probs=206.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe----------------------------ecCCCChhhHHHHHhhcCCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----------------------------SGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~----------------------------~~dl~~~~~~~~~~~~~~~d~ 65 (302)
+++|||||||||||++|+++|+++|++|+++ .+|+++.+.+..++...++|+
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~ 84 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA 84 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence 4689999999999999999999999988753 457888888888887778999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|||+|+... ......++...++.|+.++.+++++|++.+++ +|++||+.+|+... +.+++|+.+..+. +
T Consensus 85 vih~a~~~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~------~~~~~E~~~~~~~-~ 154 (352)
T PLN02240 85 VIHFAGLKA---VGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPE------EVPCTEEFPLSAT-N 154 (352)
T ss_pred EEEccccCC---ccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCC------CCCCCCCCCCCCC-C
Confidence 999999752 22334577889999999999999999998864 99999999998643 4567888777665 8
Q ss_pred chhhhHHHHHHHHHhhcC------ceEEeeecccCCCCC--------C-ch---hhHHHHhcccc--c-----------c
Q 022112 145 FYSKTKAMVEELLKNFEN------VCTLRVRMPISSDLS--------N-PR---NFITKITRYEK--V-----------V 193 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~------~~~lR~~~v~g~~~~--------~-~~---~~~~~~~~~~~--~-----------~ 193 (302)
.|+.+|..+|++++.+.. .+++|+..+||++.. . +. .++..+..+.. + .
T Consensus 155 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 234 (352)
T PLN02240 155 PYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDG 234 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCC
Confidence 999999999999876421 277899999986421 1 11 23444443321 1 1
Q ss_pred cccCCcccHhhHHHHHHHHHhcC-----C-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCC
Q 022112 194 NIPNSMTILDELLPISIEMAKRN-----L-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNN 267 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~-----~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 267 (302)
.+.++|+|++|+|++++.++++. . +++||+++++.+|++|+++.+++.+|.+.++..... ........
T Consensus 235 ~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~------~~~~~~~~ 308 (352)
T PLN02240 235 TGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR------RPGDAEEV 308 (352)
T ss_pred CEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC------CCCChhhh
Confidence 24568999999999998887531 2 369999999999999999999999997654322111 01111223
Q ss_pred ccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 268 ELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 268 ~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
.+|++|+++.|| +..+++++| +++++|++++.
T Consensus 309 ~~d~~k~~~~lg~~p~~~l~~~l-~~~~~~~~~~~ 342 (352)
T PLN02240 309 YASTEKAEKELGWKAKYGIDEMC-RDQWNWASKNP 342 (352)
T ss_pred hcCHHHHHHHhCCCCCCCHHHHH-HHHHHHHHhCc
Confidence 579999999999 445999999 99999998875
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=257.90 Aligned_cols=265 Identities=12% Similarity=0.140 Sum_probs=195.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
++|+||||||+||||++|+++|+++|++|++ +.+|+++.+.+.++++ ++|+||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID--GCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh--cCCEEE
Confidence 4678999999999999999999999998865 2457778888888888 899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC-ccccCCCCCCCCCCCCCCCCCC-----CC
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG-CIFEYDSGHPLGSGIGFKEEDT-----PN 140 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~-~vy~~~~~~~~~~~~~~~e~~~-----~~ 140 (302)
|+|+.. ..++...++.|+.++.+++++|++.+++ +|++||. .+|+.....+ ..+++|++. +.
T Consensus 87 h~A~~~--------~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~---~~~~~E~~~~~~~~~~ 155 (342)
T PLN02214 87 HTASPV--------TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDP---EAVVDESCWSDLDFCK 155 (342)
T ss_pred EecCCC--------CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCC---CcccCcccCCChhhcc
Confidence 999965 2356788999999999999999998875 9999986 5887432111 124566542 11
Q ss_pred CCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc-hh---hHHHHhcccc--cccccCCcccHhhHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP-RN---FITKITRYEK--VVNIPNSMTILDELLPIS 209 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~-~~---~~~~~~~~~~--~~~~~~~~i~v~D~a~~~ 209 (302)
.+.+.|+.+|..+|++++.+.+ .+++||+++||+..... .. .+..++.+.. .....++|+|++|+|+++
T Consensus 156 ~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~ 235 (342)
T PLN02214 156 NTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQAYVDVRDVALAH 235 (342)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCCCCCcCeeEHHHHHHHH
Confidence 2337899999999999977632 39999999999864321 11 1123333432 223567999999999999
Q ss_pred HHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHHhCC-CcchHHH
Q 022112 210 IEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELLSIKE 286 (302)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~~~~e 286 (302)
+.+++++ .++.||+++ ..+++.|+++.+++.++. +++. .+. ...........+|++|+++ || .+.+++|
T Consensus 236 ~~al~~~~~~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~-~~~-----~~~~~~~~~~~~d~~k~~~-LG~~p~~lee 307 (342)
T PLN02214 236 VLVYEAPSASGRYLLAE-SARHRGEVVEILAKLFPEYPLPT-KCK-----DEKNPRAKPYKFTNQKIKD-LGLEFTSTKQ 307 (342)
T ss_pred HHHHhCcccCCcEEEec-CCCCHHHHHHHHHHHCCCCCCCC-CCc-----cccCCCCCccccCcHHHHH-cCCcccCHHH
Confidence 9999875 457999987 578999999999999853 2111 000 0001111234689999985 99 5679999
Q ss_pred HHHHHHhhchhhh
Q 022112 287 SLIKYVFEPNKKT 299 (302)
Q Consensus 287 ~i~~~~~~~~~~~ 299 (302)
+| ++++++++++
T Consensus 308 ~i-~~~~~~~~~~ 319 (342)
T PLN02214 308 SL-YDTVKSLQEK 319 (342)
T ss_pred HH-HHHHHHHHHc
Confidence 99 9999998765
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=256.23 Aligned_cols=266 Identities=15% Similarity=0.193 Sum_probs=197.2
Q ss_pred EEEEcCCcchHHHHHHHHHhCCC-cEEEe-----------------ecCCCChhhHHHHHhh--cCCCEEEEccccCCCC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSI-DFTYG-----------------SGRLENRASLEADIAA--VKPTHVFNAAGVTGRP 76 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~-~V~~~-----------------~~dl~~~~~~~~~~~~--~~~d~Vi~~a~~~~~~ 76 (302)
|||||||||||+++++.|.++|+ +|+++ ..|+.+.+.++.+... .++|+|||+|+...
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~-- 78 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSD-- 78 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchhhhhhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccC--
Confidence 69999999999999999999997 67652 2345555544443321 48999999999652
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
....++...+++|+.++.+++++|++.++++|++||+++|+.. ..++.|++++..+.+.|+.+|..+|.+
T Consensus 79 ---~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~-------~~~~~e~~~~~~p~~~Y~~sK~~~e~~ 148 (314)
T TIGR02197 79 ---TTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDG-------EAGFREGRELERPLNVYGYSKFLFDQY 148 (314)
T ss_pred ---ccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCC-------CCCcccccCcCCCCCHHHHHHHHHHHH
Confidence 2334677889999999999999999998899999999999865 234566665433448999999999999
Q ss_pred HHhhc-------CceEEeeecccCCCCCCc---h----hhHHHHhcccccc-----------cccCCcccHhhHHHHHHH
Q 022112 157 LKNFE-------NVCTLRVRMPISSDLSNP---R----NFITKITRYEKVV-----------NIPNSMTILDELLPISIE 211 (302)
Q Consensus 157 ~~~~~-------~~~~lR~~~v~g~~~~~~---~----~~~~~~~~~~~~~-----------~~~~~~i~v~D~a~~~~~ 211 (302)
++.+. ..+++|++.+||++.... . .++..+..+..+. .+.++|+|++|+++++..
T Consensus 149 ~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~ 228 (314)
T TIGR02197 149 VRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLW 228 (314)
T ss_pred HHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHH
Confidence 86531 348899999999864311 1 2344555554321 124689999999999999
Q ss_pred HHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 212 MAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
++.+...++||+++++++|++|+++.+.+.+|.+......+.+.. ..........+|++|+++.+| +.++++|+|
T Consensus 229 ~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l- 305 (314)
T TIGR02197 229 LLENGVSGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEA--LRGKYQYFTQADITKLRAAGYYGPFTTLEEGV- 305 (314)
T ss_pred HHhcccCceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccc--cccccccccccchHHHHHhcCCCCcccHHHHH-
Confidence 998766689999999999999999999999997643211111111 000111235789999999988 568999999
Q ss_pred HHHhhchh
Q 022112 290 KYVFEPNK 297 (302)
Q Consensus 290 ~~~~~~~~ 297 (302)
+++++++.
T Consensus 306 ~~~~~~~~ 313 (314)
T TIGR02197 306 KDYVQWLL 313 (314)
T ss_pred HHHHHHHh
Confidence 88888864
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=258.16 Aligned_cols=270 Identities=19% Similarity=0.218 Sum_probs=204.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|||||||||||||++|++.|+++|++|++ +.+|++|.+.+.+++...++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 68999999999999999999999999875 24678888888888876689999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
|+... .......+...+++|+.++.+++++|++.+++ +|++||+.+|+... ..+++|+++...+.+.|+.
T Consensus 81 a~~~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~------~~~~~E~~~~~~p~~~Y~~ 151 (338)
T PRK10675 81 AGLKA---VGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQP------KIPYVESFPTGTPQSPYGK 151 (338)
T ss_pred Ccccc---ccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCC------CCccccccCCCCCCChhHH
Confidence 98762 22233456778999999999999999998875 99999999998653 4567777765333489999
Q ss_pred hHHHHHHHHHhhcC------ceEEeeecccCCCCC---C------chh---hHHHHhcccc-cc------------cccC
Q 022112 149 TKAMVEELLKNFEN------VCTLRVRMPISSDLS---N------PRN---FITKITRYEK-VV------------NIPN 197 (302)
Q Consensus 149 ~K~~~E~~~~~~~~------~~~lR~~~v~g~~~~---~------~~~---~~~~~~~~~~-~~------------~~~~ 197 (302)
+|..+|++++++.+ .+++|+..+||+... + +.. ++.++..+.. .+ .+.+
T Consensus 152 sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 231 (338)
T PRK10675 152 SKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231 (338)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEE
Confidence 99999999876531 278999999997421 1 112 2333333321 11 2357
Q ss_pred CcccHhhHHHHHHHHHhc---C-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchh
Q 022112 198 SMTILDELLPISIEMAKR---N-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASK 273 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~---~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 273 (302)
+|+|++|+|++++.+++. . .+++||+++++.+|+.|+++.+.+.+|.+..+...+. .........+|++|
T Consensus 232 ~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~~~~k 305 (338)
T PRK10675 232 DYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPR------REGDLPAYWADASK 305 (338)
T ss_pred eeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCC------CCCchhhhhcCHHH
Confidence 899999999999998874 1 2369999999999999999999999997754321110 01111234689999
Q ss_pred HHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 274 LKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 274 ~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+++.+| +..+++++| +++++|++++.
T Consensus 306 ~~~~lg~~p~~~~~~~~-~~~~~~~~~~~ 333 (338)
T PRK10675 306 ADRELNWRVTRTLDEMA-QDTWHWQSRHP 333 (338)
T ss_pred HHHHhCCCCcCcHHHHH-HHHHHHHHhhh
Confidence 999999 467999999 99999987753
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=280.05 Aligned_cols=274 Identities=18% Similarity=0.157 Sum_probs=207.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC--CCcEEE------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTY------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++|+|||||||||||++|+++|+++ +++|++ +.+|++|.+.+..++...++|+|
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 4679999999999999999999987 566664 24688888877777755689999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
||+|+.. ....+..++..++++|+.++.+++++|++.+ + ++|++||..+||.....+ ..+..|+.+..|. +
T Consensus 85 iHlAa~~---~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~---~~~~~E~~~~~p~-~ 157 (668)
T PLN02260 85 MHFAAQT---HVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDA---DVGNHEASQLLPT-N 157 (668)
T ss_pred EECCCcc---CchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCcccc---ccCccccCCCCCC-C
Confidence 9999986 2444455677889999999999999999986 5 599999999999754211 1123566665555 8
Q ss_pred chhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHHH
Q 022112 145 FYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISIE 211 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~ 211 (302)
+|+.+|..+|++++.+. ..+++|++++||++.... +.|+..+..+..+. .+.++|+|++|+|+++..
T Consensus 158 ~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 158 PYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHH
Confidence 99999999999987653 238999999999875322 23455555555432 246789999999999999
Q ss_pred HHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCcc-ccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHH
Q 022112 212 MAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW-KNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKES 287 (302)
Q Consensus 212 ~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~ 287 (302)
++++. .+++||+++++.+|+.|+++.+++.+|.+... ..+.. ..+.......+|++|+++ +| +.++|+|+
T Consensus 238 ~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~-----~~p~~~~~~~~d~~k~~~-lGw~p~~~~~eg 311 (668)
T PLN02260 238 VLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVE-----NRPFNDQRYFLDDQKLKK-LGWQERTSWEEG 311 (668)
T ss_pred HHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecC-----CCCCCcceeecCHHHHHH-cCCCCCCCHHHH
Confidence 98865 45799999999999999999999999976431 11100 001111123589999974 88 45799999
Q ss_pred HHHHHhhchhhhc
Q 022112 288 LIKYVFEPNKKTT 300 (302)
Q Consensus 288 i~~~~~~~~~~~~ 300 (302)
| +++++|++++.
T Consensus 312 l-~~~i~w~~~~~ 323 (668)
T PLN02260 312 L-KKTMEWYTSNP 323 (668)
T ss_pred H-HHHHHHHHhCh
Confidence 9 99999998765
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=245.19 Aligned_cols=274 Identities=17% Similarity=0.192 Sum_probs=202.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++|+|+|||||||||++|++.|+++||.|++ +.+|++|++++.+++. +||.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~--gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID--GCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh--CCCEE
Confidence 4679999999999999999999999999998 6788899999999999 99999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-Ce-EEEEcCCccccCCCCCCCCCCCCCCCCCCCC----
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPN---- 140 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~---- 140 (302)
||+|.+.. . .......+.++..+.|+.|++++|++.. +| +|++||.+....... ..++...++|+....
T Consensus 83 fH~Asp~~---~-~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~-~~~~~~vvdE~~wsd~~~~ 157 (327)
T KOG1502|consen 83 FHTASPVD---F-DLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGP-NIGENSVVDEESWSDLDFC 157 (327)
T ss_pred EEeCccCC---C-CCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCc-CCCCCcccccccCCcHHHH
Confidence 99999872 2 2222345899999999999999999987 65 888888765433211 111144555554322
Q ss_pred -CCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCc----hhhHHHHhcccc--cccccCCcccHhhHHHH
Q 022112 141 -FVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNP----RNFITKITRYEK--VVNIPNSMTILDELLPI 208 (302)
Q Consensus 141 -~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~----~~~~~~~~~~~~--~~~~~~~~i~v~D~a~~ 208 (302)
.....|..+|..+|+.++++++. +.+.|+.|+||..... ...+-.++.|.. .......|+||+|+|.+
T Consensus 158 ~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~~~~VdVrDVA~A 237 (327)
T KOG1502|consen 158 RCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFWLAFVDVRDVALA 237 (327)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCceeeEeHHHHHHH
Confidence 22257999999999999888654 7789999999976431 234555666632 23345569999999999
Q ss_pred HHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-CcchHHH
Q 022112 209 SIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELLSIKE 286 (302)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~~~~e 286 (302)
++.+++++ ..|.|.+.+ +..++.|+++.+.+.+.... + +..... ..........++++|++++++ .+.+|+|
T Consensus 238 Hv~a~E~~~a~GRyic~~-~~~~~~ei~~~l~~~~P~~~-i---p~~~~~-~~~~~~~~~~~~~~k~k~lg~~~~~~l~e 311 (327)
T KOG1502|consen 238 HVLALEKPSAKGRYICVG-EVVSIKEIADILRELFPDYP-I---PKKNAE-EHEGFLTSFKVSSEKLKSLGGFKFRPLEE 311 (327)
T ss_pred HHHHHcCcccCceEEEec-CcccHHHHHHHHHHhCCCCC-C---CCCCCc-cccccccccccccHHHHhcccceecChHH
Confidence 99999996 457888887 66669999999999875332 1 110000 000110112589999999877 8999999
Q ss_pred HHHHHHhhchhhhc
Q 022112 287 SLIKYVFEPNKKTT 300 (302)
Q Consensus 287 ~i~~~~~~~~~~~~ 300 (302)
.+ .++++.+++..
T Consensus 312 ~~-~dt~~sl~~~~ 324 (327)
T KOG1502|consen 312 TL-SDTVESLREKG 324 (327)
T ss_pred HH-HHHHHHHHHhc
Confidence 99 99888887653
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=251.59 Aligned_cols=271 Identities=17% Similarity=0.174 Sum_probs=207.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhCC--CcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQS--IDFTY------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g--~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+|||||||||||++++++|+++| ++|++ +.+|++|++++.++++..++|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 59999999999999999999987 66664 34688899999999986669999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
|+.. .......++...+++|+.++.+++++|++. ++++|++||..+||.... ..++.|..+..|. +.|+
T Consensus 81 a~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~-----~~~~~e~~~~~~~-~~Y~ 151 (317)
T TIGR01181 81 AAES---HVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEK-----GDAFTETTPLAPS-SPYS 151 (317)
T ss_pred cccc---CchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCC-----CCCcCCCCCCCCC-CchH
Confidence 9976 233455677888999999999999999986 457999999999996531 2256777666554 8999
Q ss_pred hhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHh
Q 022112 148 KTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 148 ~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.+|..+|.+++.+. +.+++|++.+||+..... +.++..+..+.++. ...++|+|++|+|+++..+++
T Consensus 152 ~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~ 231 (317)
T TIGR01181 152 ASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLE 231 (317)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHc
Confidence 99999999987653 348999999999864222 23445555554422 135689999999999999988
Q ss_pred cCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHH
Q 022112 215 RNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKY 291 (302)
Q Consensus 215 ~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~ 291 (302)
+.. +++||+++++.+++.|+++.+.+.+|.+......... .........+|++|+++.|| +.++|+++| ++
T Consensus 232 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i-~~ 305 (317)
T TIGR01181 232 KGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVED-----RPGHDRRYAIDASKIKRELGWAPKYTFEEGL-RK 305 (317)
T ss_pred CCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCC-----CccchhhhcCCHHHHHHHhCCCCCCcHHHHH-HH
Confidence 653 4699999999999999999999999975332211100 00000123589999999999 446899999 89
Q ss_pred HhhchhhhcC
Q 022112 292 VFEPNKKTTG 301 (302)
Q Consensus 292 ~~~~~~~~~~ 301 (302)
++++++++..
T Consensus 306 ~~~~~~~~~~ 315 (317)
T TIGR01181 306 TVQWYLDNEW 315 (317)
T ss_pred HHHHHHhccC
Confidence 9999887753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=240.46 Aligned_cols=271 Identities=18% Similarity=0.219 Sum_probs=219.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
.++||||||+||||+|.+-+|+++|++|++ ..+|+.|.+.++++|...++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 458999999999999999999999999888 78999999999999999999999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
+|+|+.. .+..+..+|..+...|+.|+.++|+.+++++++ +|+.||+.|||... .-|++|+.+...|.++
T Consensus 82 ~Hfa~~~---~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~------~ip~te~~~t~~p~~p 152 (343)
T KOG1371|consen 82 MHFAALA---AVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPT------KVPITEEDPTDQPTNP 152 (343)
T ss_pred Eeehhhh---ccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcc------eeeccCcCCCCCCCCc
Confidence 9999988 477888899999999999999999999999987 89999999999876 6788999988844599
Q ss_pred hhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCc---------hhhH---HHHhcccc----c--------c-cc
Q 022112 146 YSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNP---------RNFI---TKITRYEK----V--------V-NI 195 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~---------~~~~---~~~~~~~~----~--------~-~~ 195 (302)
|+.+|...|+++..+... .+||...++|...++. ++.+ .++.-+.. + . ..
T Consensus 153 yg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~ 232 (343)
T KOG1371|consen 153 YGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTI 232 (343)
T ss_pred chhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccCCCe
Confidence 999999999999776433 8899999999543322 1122 11111111 0 0 24
Q ss_pred cCCcccHhhHHHHHHHHHhcCC----CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCc
Q 022112 196 PNSMTILDELLPISIEMAKRNL----TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDA 271 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 271 (302)
.++++|+-|+|..+..++++.. .++||++++...++.+++..++++.|.++++.-.+. +.........++
T Consensus 233 vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~------R~gdv~~~ya~~ 306 (343)
T KOG1371|consen 233 VRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR------RNGDVAFVYANP 306 (343)
T ss_pred eecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC------CCCCceeeeeCh
Confidence 6789999999999999998742 369999999999999999999999999877432221 111113457899
Q ss_pred hhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 272 SKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 272 ~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
++++++|| +...+++++ ++..+|-.+++
T Consensus 307 ~~a~~elgwk~~~~iee~c-~dlw~W~~~np 336 (343)
T KOG1371|consen 307 SKAQRELGWKAKYGLQEML-KDLWRWQKQNP 336 (343)
T ss_pred HHHHHHhCCccccCHHHHH-HHHHHHHhcCC
Confidence 99999999 456889999 88888877665
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=252.40 Aligned_cols=268 Identities=16% Similarity=0.160 Sum_probs=195.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
.|+|||||||||||++|+++|+++|++|+++ .+|+.+.+.+..+++ ++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD--GCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc--CCCEEE
Confidence 4689999999999999999999999998762 346667777777777 799999
Q ss_pred EccccCCCCCcchhhhhHH-HHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCc--cccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNVDWCESHKV-ETIRTNVVGTLTLADVCRDK-GL-ILINYATGC--IFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~-~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~--vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+|+... ....++. ..+++|+.++.+++++|++. ++ ++|++||.+ +|++....+ +.+++|+.+..|.
T Consensus 82 h~A~~~~-----~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~---~~~~~E~~~~~p~ 153 (322)
T PLN02662 82 HTASPFY-----HDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTP---DVVVDETWFSDPA 153 (322)
T ss_pred EeCCccc-----CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCC---CCcCCcccCCChh
Confidence 9999652 1223443 78899999999999999987 66 489999976 465322101 3356666554331
Q ss_pred -----CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc----hhhHHHHhcccc-cccccCCcccHhhHHH
Q 022112 143 -----GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP----RNFITKITRYEK-VVNIPNSMTILDELLP 207 (302)
Q Consensus 143 -----~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~-~~~~~~~~i~v~D~a~ 207 (302)
.+.|+.+|..+|++++.+. +.+++||+.+||+..... ..++..++.+.. .....++|+|++|+|+
T Consensus 154 ~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 233 (322)
T PLN02662 154 FCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQTFPNASYRWVDVRDVAN 233 (322)
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHH
Confidence 2589999999999987653 338999999999864221 234455555543 2346789999999999
Q ss_pred HHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-CcchHH
Q 022112 208 ISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELLSIK 285 (302)
Q Consensus 208 ~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~~~~ 285 (302)
+++.+++.+ ..+.||++ ++.+|++|+++.+.+.++.... +.... ..........+|++|+++ || .+.+++
T Consensus 234 a~~~~~~~~~~~~~~~~~-g~~~s~~e~~~~i~~~~~~~~~----~~~~~--~~~~~~~~~~~d~~k~~~-lg~~~~~~~ 305 (322)
T PLN02662 234 AHIQAFEIPSASGRYCLV-ERVVHYSEVVKILHELYPTLQL----PEKCA--DDKPYVPTYQVSKEKAKS-LGIEFIPLE 305 (322)
T ss_pred HHHHHhcCcCcCCcEEEe-CCCCCHHHHHHHHHHHCCCCCC----CCCCC--CccccccccccChHHHHH-hCCccccHH
Confidence 999999875 35789997 4789999999999998764211 10000 001111345799999986 89 667999
Q ss_pred HHHHHHHhhchhhhc
Q 022112 286 ESLIKYVFEPNKKTT 300 (302)
Q Consensus 286 e~i~~~~~~~~~~~~ 300 (302)
++| +++++|++++.
T Consensus 306 ~~l-~~~~~~~~~~~ 319 (322)
T PLN02662 306 VSL-KDTVESLKEKG 319 (322)
T ss_pred HHH-HHHHHHHHHcC
Confidence 999 89999988654
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=250.11 Aligned_cols=271 Identities=15% Similarity=0.161 Sum_probs=198.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
+|++|||||+||||++|++.|+++|++|++ +.+|+++.+.+.++++ ++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID--GCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc--CCCEEE
Confidence 579999999999999999999999999865 2457788888888887 799999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC---
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV--- 142 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~--- 142 (302)
|+|+... ......++...+++|+.++.+++++|++. +. ++|++||..+|++.... ..++.+++|+.+..|.
T Consensus 83 h~A~~~~---~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~-~~~~~~~~E~~~~~p~~~~ 158 (325)
T PLN02989 83 HTASPVA---ITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETK-LGPNDVVDETFFTNPSFAE 158 (325)
T ss_pred EeCCCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCcc-CCCCCccCcCCCCchhHhc
Confidence 9999652 22233456788999999999999999885 44 59999998877643210 0013456777665432
Q ss_pred --CCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc----hhhHHHHhcccccc-cccCCcccHhhHHHHHH
Q 022112 143 --GSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP----RNFITKITRYEKVV-NIPNSMTILDELLPISI 210 (302)
Q Consensus 143 --~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~v~D~a~~~~ 210 (302)
.+.|+.+|..+|++++.+.+ .+++||+.+||+..... ..++..++.+.... ...++|+|++|+|++++
T Consensus 159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~~~~~r~~i~v~Dva~a~~ 238 (325)
T PLN02989 159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPFNTTHHRFVDVRDVALAHV 238 (325)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCCCCcCcCeeEHHHHHHHHH
Confidence 36899999999999876532 38899999999865321 13455555554332 34579999999999999
Q ss_pred HHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHH
Q 022112 211 EMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKES 287 (302)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~ 287 (302)
.+++++. .++||++ ++.+|++|+++.+.+.++.. ... ... .............|++|+++ || +..+++|+
T Consensus 239 ~~l~~~~~~~~~ni~-~~~~s~~ei~~~i~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~k~~~-lg~~p~~~l~~g 311 (325)
T PLN02989 239 KALETPSANGRYIID-GPVVTIKDIENVLREFFPDL-CIA---DRN-EDITELNSVTFNVCLDKVKS-LGIIEFTPTETS 311 (325)
T ss_pred HHhcCcccCceEEEe-cCCCCHHHHHHHHHHHCCCC-CCC---CCC-CCcccccccCcCCCHHHHHH-cCCCCCCCHHHH
Confidence 9998753 5799995 56899999999999998732 111 000 00000111234789999987 89 67799999
Q ss_pred HHHHHhhchhh
Q 022112 288 LIKYVFEPNKK 298 (302)
Q Consensus 288 i~~~~~~~~~~ 298 (302)
| ++++++++.
T Consensus 312 i-~~~~~~~~~ 321 (325)
T PLN02989 312 L-RDTVLSLKE 321 (325)
T ss_pred H-HHHHHHHHH
Confidence 9 888888764
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=245.60 Aligned_cols=268 Identities=16% Similarity=0.200 Sum_probs=191.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
.++|||||||||||++++++|+++|++|++. .+|+++.+.+.++++ ++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE--GCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh--CCCEEE
Confidence 4689999999999999999999999998752 356777777788887 799999
Q ss_pred EccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC---
Q 022112 68 NAAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF--- 141 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~--- 141 (302)
|+|+... . ...++ ...++.|+.++.+++++|++. ++ ++|++||.++|..... +..++.+++|++...|
T Consensus 83 h~A~~~~---~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~-~~~~~~~~~E~~~~~p~~~ 156 (322)
T PLN02986 83 HTASPVF---F--TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQP-PIEANDVVDETFFSDPSLC 156 (322)
T ss_pred EeCCCcC---C--CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCc-cCCCCCCcCcccCCChHHh
Confidence 9999652 1 12233 357899999999999999985 56 5999999876431110 1111345666654322
Q ss_pred --CCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc----hhhHHHHhcccccc-cccCCcccHhhHHHHH
Q 022112 142 --VGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP----RNFITKITRYEKVV-NIPNSMTILDELLPIS 209 (302)
Q Consensus 142 --~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~v~D~a~~~ 209 (302)
+.+.|+.+|..+|..++.+.+ .+++||+.+||+..... ..++..++.+.... .+.++|+|++|+|+++
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~ 236 (322)
T PLN02986 157 RETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVALAH 236 (322)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCCCCCcCcceeEHHHHHHHH
Confidence 247899999999999877632 38899999999864321 23455555554432 3457899999999999
Q ss_pred HHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-CcchHHHH
Q 022112 210 IEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELLSIKES 287 (302)
Q Consensus 210 ~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~~~~e~ 287 (302)
+.+++++ ..+.||++ ++.+|+.|+++.+.+.++. ..+.. ... .. ...+....+|++|+++ || .+.+++|+
T Consensus 237 ~~al~~~~~~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~-~~~-~~---~~~~~~~~~d~~~~~~-lg~~~~~l~e~ 308 (322)
T PLN02986 237 IKALETPSANGRYIID-GPIMSVNDIIDILRELFPD-LCIAD-TNE-ES---EMNEMICKVCVEKVKN-LGVEFTPMKSS 308 (322)
T ss_pred HHHhcCcccCCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCC-CCc-cc---cccccCCccCHHHHHH-cCCcccCHHHH
Confidence 9999875 35799995 5789999999999999873 22111 100 00 0111122589999966 89 66799999
Q ss_pred HHHHHhhchhh
Q 022112 288 LIKYVFEPNKK 298 (302)
Q Consensus 288 i~~~~~~~~~~ 298 (302)
| ++++++++.
T Consensus 309 ~-~~~~~~~~~ 318 (322)
T PLN02986 309 L-RDTILSLKE 318 (322)
T ss_pred H-HHHHHHHHH
Confidence 9 888887764
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=247.14 Aligned_cols=266 Identities=16% Similarity=0.173 Sum_probs=188.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
+|+||||||+||||++|+++|+++|++|++ +.+|++|.+.+.+.+. ++|+|||
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih 86 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIA--GCDLVFH 86 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHh--cCCEEEE
Confidence 568999999999999999999999999854 2457778888888887 7999999
Q ss_pred ccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCCCCCCCCCCCCCCCCC--------
Q 022112 69 AAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYDSGHPLGSGIGFKEED-------- 137 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~-------- 137 (302)
+|+... ....++ ...+++|+.++.+++++|++. ++ ++|++||.++|+....... +.++.|+.
T Consensus 87 ~A~~~~-----~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~--~~~~~E~~~~~~~~~~ 159 (338)
T PLN00198 87 VATPVN-----FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGT--GLVMNEKNWTDVEFLT 159 (338)
T ss_pred eCCCCc-----cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCC--CceeccccCCchhhhh
Confidence 999641 111233 356799999999999999886 45 5999999999985321000 12223321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCC-chh---hHHHHhcccccc----------cccCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSN-PRN---FITKITRYEKVV----------NIPNS 198 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~-~~~---~~~~~~~~~~~~----------~~~~~ 198 (302)
...++.++|+.+|.++|.+++.+.+ .+++||+++||+.... .+. ++..++.+.... ...++
T Consensus 160 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (338)
T PLN00198 160 SEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSIS 239 (338)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcc
Confidence 1123447899999999999877643 3889999999986421 112 223344443311 12369
Q ss_pred cccHhhHHHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHH
Q 022112 199 MTILDELLPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKT 276 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 276 (302)
|+|++|+|++++.+++.+. .+.|+ ++++.+|+.|+++.+.+.++. +++. .+. . ........+|++|+++
T Consensus 240 ~i~V~D~a~a~~~~~~~~~~~~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~-~~~------~-~~~~~~~~~~~~k~~~ 310 (338)
T PLN00198 240 ITHVEDVCRAHIFLAEKESASGRYI-CCAANTSVPELAKFLIKRYPQYQVPT-DFG------D-FPSKAKLIISSEKLIS 310 (338)
T ss_pred eeEHHHHHHHHHHHhhCcCcCCcEE-EecCCCCHHHHHHHHHHHCCCCCCCc-ccc------c-cCCCCccccChHHHHh
Confidence 9999999999999998753 46785 555789999999999998763 2221 111 0 0111234689999988
Q ss_pred hCC--CcchHHHHHHHHHhhchhhh
Q 022112 277 EFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 277 ~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+| +..+++|+| +++++|++++
T Consensus 311 -~G~~p~~~l~~gi-~~~~~~~~~~ 333 (338)
T PLN00198 311 -EGFSFEYGIEEIY-DQTVEYFKAK 333 (338)
T ss_pred -CCceecCcHHHHH-HHHHHHHHHc
Confidence 59 556999999 8999998865
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=246.95 Aligned_cols=266 Identities=15% Similarity=0.208 Sum_probs=188.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
..++||||||+||||++|+++|+++|++|++ +.+|+++.+.+.++++ ++|+|
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~--~~d~V 81 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR--GCTGV 81 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh--CCCEE
Confidence 4568999999999999999999999999875 2457778888888888 79999
Q ss_pred EEccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCccccCCCCCCCCCCCC-CCCCCC----
Q 022112 67 FNAAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDKG-L-ILINYATGCIFEYDSGHPLGSGIG-FKEEDT---- 138 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~-~~e~~~---- 138 (302)
||+|+... ....++ ...+++|+.++.+++++|++.+ + ++|++||.++|+.... ..+ ++|+..
T Consensus 82 iH~A~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~-----~~~~~~E~~~~~~~ 151 (351)
T PLN02650 82 FHVATPMD-----FESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEH-----QKPVYDEDCWSDLD 151 (351)
T ss_pred EEeCCCCC-----CCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCC-----CCCccCcccCCchh
Confidence 99998652 112233 4788999999999999999876 5 5999999877764321 112 344421
Q ss_pred ----CCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCC--chhhHHHH--hccccc-c--cccCCcccH
Q 022112 139 ----PNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSN--PRNFITKI--TRYEKV-V--NIPNSMTIL 202 (302)
Q Consensus 139 ----~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~--~~~~~~~~--~~~~~~-~--~~~~~~i~v 202 (302)
+..+.++|+.+|..+|.+++.+.+ .+++||+++||+.... +..++..+ ..+... . ...++|+|+
T Consensus 152 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V 231 (351)
T PLN02650 152 FCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHL 231 (351)
T ss_pred hhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeH
Confidence 111236899999999999877643 3899999999986422 22333332 222211 1 134799999
Q ss_pred hhHHHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCC-CccccccccccceeeecCCCCCccCchhHHHhCC-
Q 022112 203 DELLPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPN-FTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP- 279 (302)
Q Consensus 203 ~D~a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg- 279 (302)
+|+|++++.+++++. .+.| +++++.+|+.|+++.+.+.++.. .+ ..+. ..........+|++|++ .||
T Consensus 232 ~Dva~a~~~~l~~~~~~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~-~~~~------~~~~~~~~~~~d~~k~~-~lG~ 302 (351)
T PLN02650 232 DDLCNAHIFLFEHPAAEGRY-ICSSHDATIHDLAKMLREKYPEYNIP-ARFP------GIDEDLKSVEFSSKKLT-DLGF 302 (351)
T ss_pred HHHHHHHHHHhcCcCcCceE-EecCCCcCHHHHHHHHHHhCcccCCC-CCCC------CcCcccccccCChHHHH-HhCC
Confidence 999999999998753 4688 55668899999999999987632 11 0110 00111123467899985 589
Q ss_pred -CcchHHHHHHHHHhhchhhhc
Q 022112 280 -ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 280 -~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+..+++++| ++++++++++.
T Consensus 303 ~p~~~l~egl-~~~i~~~~~~~ 323 (351)
T PLN02650 303 TFKYSLEDMF-DGAIETCREKG 323 (351)
T ss_pred CCCCCHHHHH-HHHHHHHHHcC
Confidence 445899999 99999987654
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=241.71 Aligned_cols=270 Identities=19% Similarity=0.208 Sum_probs=201.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------ecCCCChhhHHHHHhhcCC-CEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------SGRLENRASLEADIAAVKP-THVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------~~dl~~~~~~~~~~~~~~~-d~Vi~~a~~~~~~ 76 (302)
|+|||||||||||++|++.|+++||+|+++ .+|+++.+.....+. .. |+|||+|+...
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~d~vih~aa~~~-- 76 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAK--GVPDAVIHLAAQSS-- 76 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHh--cCCCEEEEccccCc--
Confidence 459999999999999999999999999983 356677766666666 44 99999999873
Q ss_pred Ccchhhh-hHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCC-CCCCCCCCchhhhHHHH
Q 022112 77 NVDWCES-HKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEE-DTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 77 ~~~~~~~-~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~-~~~~~~~~~Y~~~K~~~ 153 (302)
...... ++..+++.|+.++.+++++|++.+++ +|+.||.++|+.... ..++.|+ .+..|. ++|+.+|.++
T Consensus 77 -~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~-----~~~~~E~~~~~~p~-~~Yg~sK~~~ 149 (314)
T COG0451 77 -VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPP-----PLPIDEDLGPPRPL-NPYGVSKLAA 149 (314)
T ss_pred -hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCC-----CCCcccccCCCCCC-CHHHHHHHHH
Confidence 222222 46679999999999999999997776 777677677775421 3367777 566655 5899999999
Q ss_pred HHHHHhhc-----CceEEeeecccCCCCCCc-h-hh----HHHHhcccccc------cccCCcccHhhHHHHHHHHHhcC
Q 022112 154 EELLKNFE-----NVCTLRVRMPISSDLSNP-R-NF----ITKITRYEKVV------NIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 154 E~~~~~~~-----~~~~lR~~~v~g~~~~~~-~-~~----~~~~~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
|+.++.+. +.+++||+.+||++.... . .+ +.++..+.+.. ...++++|++|++++++.+++++
T Consensus 150 E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 229 (314)
T COG0451 150 EQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENP 229 (314)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCC
Confidence 99997765 349999999999875332 1 22 33345454411 23468999999999999999986
Q ss_pred CCCeEEecCCC-ccCHHHHHHHHHhhcCCCCcc-ccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHH
Q 022112 217 LTGIWNFTNPG-VVSHNEILEMYRQYIDPNFTW-KNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYV 292 (302)
Q Consensus 217 ~~~~~~~~~~~-~~s~~e~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~ 292 (302)
..+.||+++++ ..+++|+++.+.+.+|.+... ..... ...........+|.+|.++.|| +..++++++ .++
T Consensus 230 ~~~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i-~~~ 304 (314)
T COG0451 230 DGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPL----GRRGDLREGKLLDISKARAALGWEPKVSLEEGL-ADT 304 (314)
T ss_pred CCcEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCC----CCCCcccccccCCHHHHHHHhCCCCCCCHHHHH-HHH
Confidence 54499999997 899999999999999988552 11110 1111122355799999999999 335899999 888
Q ss_pred hhchhhhc
Q 022112 293 FEPNKKTT 300 (302)
Q Consensus 293 ~~~~~~~~ 300 (302)
++++..+.
T Consensus 305 ~~~~~~~~ 312 (314)
T COG0451 305 LEWLLKKL 312 (314)
T ss_pred HHHHHHhh
Confidence 88776553
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=243.52 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=189.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
..|+||||||+||||++++++|+++|++|++ +.+|+.+.+.+.+++. ++|+|||+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~d~Vih~ 86 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVK--GCDGVFHV 86 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHc--CCCEEEEC
Confidence 4579999999999999999999999998875 3467888888888887 79999999
Q ss_pred cccCCCCCcchhhhhHHHH-----HHHhHHHHHHHHHHHHHhC-C-eEEEEcCCccccCCCCCCCCCCCCCCCCC--C--
Q 022112 70 AGVTGRPNVDWCESHKVET-----IRTNVVGTLTLADVCRDKG-L-ILINYATGCIFEYDSGHPLGSGIGFKEED--T-- 138 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~-----~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~--~-- 138 (302)
|+..... ......++... ++.|+.++.+++++|++.+ + ++|++||.++|+....... ...+++|+. +
T Consensus 87 A~~~~~~-~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~-~~~~~~E~~~~p~~ 164 (353)
T PLN02896 87 AASMEFD-VSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGR-WRAVVDETCQTPID 164 (353)
T ss_pred CccccCC-ccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCC-CCCccCcccCCcHH
Confidence 9976311 10122344443 4455699999999998874 5 5999999999985321000 012344542 1
Q ss_pred ----CCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCC-chhhHHHHh---ccccc-c------c---c
Q 022112 139 ----PNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSN-PRNFITKIT---RYEKV-V------N---I 195 (302)
Q Consensus 139 ----~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~-~~~~~~~~~---~~~~~-~------~---~ 195 (302)
+.++.++|+.+|.++|++++.+.+. .++|++++||+.... .+.++..++ .+... . . .
T Consensus 165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 244 (353)
T PLN02896 165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMG 244 (353)
T ss_pred HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccC
Confidence 1123358999999999998776432 899999999986432 233444333 23221 1 0 1
Q ss_pred cCCcccHhhHHHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhH
Q 022112 196 PNSMTILDELLPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKL 274 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 274 (302)
.++|+|++|+|++++.+++++. .+.|++ +++.++++|+++.+.+.++.......+.. .... .....+|++|+
T Consensus 245 ~~dfi~v~Dva~a~~~~l~~~~~~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~ 317 (353)
T PLN02896 245 SIALVHIEDICDAHIFLMEQTKAEGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE-----EKRG-SIPSEISSKKL 317 (353)
T ss_pred ceeEEeHHHHHHHHHHHHhCCCcCccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-----cccC-ccccccCHHHH
Confidence 3589999999999999998653 467865 56889999999999999874311111111 1111 11135688998
Q ss_pred HHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 275 KTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 275 ~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
++ || +..+++++| ++++++++...
T Consensus 318 ~~-lGw~p~~~l~~~i-~~~~~~~~~~~ 343 (353)
T PLN02896 318 RD-LGFEYKYGIEEII-DQTIDCCVDHG 343 (353)
T ss_pred HH-cCCCccCCHHHHH-HHHHHHHHHCC
Confidence 75 89 445899999 99998887654
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=239.53 Aligned_cols=271 Identities=16% Similarity=0.172 Sum_probs=203.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+||||||+||||+++++.|+++|++|++ +.+|+++.+++.++++ ++|+|||+|+...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~--~~d~vi~~a~~~~-- 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVA--GCRALFHVAADYR-- 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHh--CCCEEEEeceecc--
Confidence 58999999999999999999999999876 4678889999999988 8999999998541
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC--CCchhhhHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV--GSFYSKTKAMV 153 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~--~~~Y~~~K~~~ 153 (302)
....++...++.|+.++.++++++++.+++ +|++||+.+|+.... +.+++|+.+..+. ...|+.+|..+
T Consensus 77 ---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-----~~~~~e~~~~~~~~~~~~Y~~sK~~~ 148 (328)
T TIGR03466 77 ---LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGD-----GTPADETTPSSLDDMIGHYKRSKFLA 148 (328)
T ss_pred ---cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCC-----CCCcCccCCCCcccccChHHHHHHHH
Confidence 123457788999999999999999998774 999999999985321 4466777665432 35899999999
Q ss_pred HHHHHhhc-----CceEEeeecccCCCCCCch---hhHHHHhcccc--cccccCCcccHhhHHHHHHHHHhcCCCC-eEE
Q 022112 154 EELLKNFE-----NVCTLRVRMPISSDLSNPR---NFITKITRYEK--VVNIPNSMTILDELLPISIEMAKRNLTG-IWN 222 (302)
Q Consensus 154 E~~~~~~~-----~~~~lR~~~v~g~~~~~~~---~~~~~~~~~~~--~~~~~~~~i~v~D~a~~~~~~~~~~~~~-~~~ 222 (302)
|++++.+. ..+++||+.+||+...... .++.....+.. ......+|+|++|+|++++.+++++..+ .|+
T Consensus 149 e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~~~~~~~~ 228 (328)
T TIGR03466 149 EQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERGRIGERYI 228 (328)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCCCCCceEE
Confidence 99987653 2499999999998643221 23333333222 1234568999999999999999875444 677
Q ss_pred ecCCCccCHHHHHHHHHhhcCCCCccccccccccc------------eeeecC---------CCCCccCchhHHHhCC-C
Q 022112 223 FTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQA------------KVIVAP---------RSNNELDASKLKTEFP-E 280 (302)
Q Consensus 223 ~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~------------~~~~~~---------~~~~~~d~~k~~~~lg-~ 280 (302)
++ ++.+|+.|+++.+.+.+|.+......+..... ...... .....+|++|+++.|| .
T Consensus 229 ~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~ 307 (328)
T TIGR03466 229 LG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYR 307 (328)
T ss_pred ec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHHcCCC
Confidence 75 68999999999999999976543322211000 000000 0134689999999999 5
Q ss_pred cchHHHHHHHHHhhchhhh
Q 022112 281 LLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 281 ~~~~~e~i~~~~~~~~~~~ 299 (302)
+.+++++| ++++++++++
T Consensus 308 p~~~~~~i-~~~~~~~~~~ 325 (328)
T TIGR03466 308 QRPAREAL-RDAVEWFRAN 325 (328)
T ss_pred CcCHHHHH-HHHHHHHHHh
Confidence 57999999 9999998775
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=235.56 Aligned_cols=222 Identities=15% Similarity=0.173 Sum_probs=172.0
Q ss_pred EEEcCCcchHHHHHHHHHhCC--CcEEE---------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 18 LIYGRTGWIGGLLGKLCQAQS--IDFTY---------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 18 lItGatG~iG~~l~~~L~~~g--~~V~~---------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|||||+||||++|+++|+++| ++|++ +.+|++|.+++.++++ ++|+|||+|+...
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~--g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE--GVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc--CCceEEEeCcccc
Confidence 699999999999999999999 67665 5799999999999999 8999999999872
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCC-CCCCCCCCCCCCCCCC-CCCCchhhhHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSG-HPLGSGIGFKEEDTPN-FVGSFYSKTKA 151 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~-~~~~~~~~~~e~~~~~-~~~~~Y~~~K~ 151 (302)
. ......+..+++|+.||++++++|++.+++ +||+||.++++++.. .++ ...+|+.+.. .....|+.||.
T Consensus 79 ---~-~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~---~~~dE~~~~~~~~~~~Y~~SK~ 151 (280)
T PF01073_consen 79 ---P-WGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPI---INGDEDTPYPSSPLDPYAESKA 151 (280)
T ss_pred ---c-cCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCc---ccCCcCCcccccccCchHHHHH
Confidence 2 224567889999999999999999999997 999999999886221 111 0112333221 13479999999
Q ss_pred HHHHHHHhhcC----------ceEEeeecccCCCCCCch-hhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhc
Q 022112 152 MVEELLKNFEN----------VCTLRVRMPISSDLSNPR-NFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 152 ~~E~~~~~~~~----------~~~lR~~~v~g~~~~~~~-~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
++|+++.+... .++|||+.+||++..... .+...+..+.... ....+++|++|+|.+++.+.+.
T Consensus 152 ~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~ 231 (280)
T PF01073_consen 152 LAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQA 231 (280)
T ss_pred HHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHH
Confidence 99999877644 278999999999654333 3444444442211 1356899999999999987753
Q ss_pred ---C------CCCeEEecCCCccC-HHHHHHHHHhhcCCCCcc
Q 022112 216 ---N------LTGIWNFTNPGVVS-HNEILEMYRQYIDPNFTW 248 (302)
Q Consensus 216 ---~------~~~~~~~~~~~~~s-~~e~~~~~~~~~g~~~~~ 248 (302)
+ .++.|++++++++. +.||...+.+.+|.+.+.
T Consensus 232 L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 232 LLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred hccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 2 34699999999999 999999999999988653
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-32 Score=236.54 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=201.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
|||||||||+||+++++.|+++|++|++ +.+|+.+.+++.+++...++|+|||+|+.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 5899999999999999999999998764 35788888999888876689999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
.. ......++...++.|+.++.+++++|++.++ ++|++||..+|+... ..+++|+++..+. +.|+.+|.
T Consensus 81 ~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~------~~~~~e~~~~~~~-~~y~~sK~ 150 (328)
T TIGR01179 81 IA---VGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPS------SIPISEDSPLGPI-NPYGRSKL 150 (328)
T ss_pred cC---cchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCC------CCCccccCCCCCC-CchHHHHH
Confidence 62 3334456677889999999999999999876 489999999998553 3467788777655 89999999
Q ss_pred HHHHHHHhhc------CceEEeeecccCCCCCC--------chhhHHHH---hcc--ccc-----------ccccCCccc
Q 022112 152 MVEELLKNFE------NVCTLRVRMPISSDLSN--------PRNFITKI---TRY--EKV-----------VNIPNSMTI 201 (302)
Q Consensus 152 ~~E~~~~~~~------~~~~lR~~~v~g~~~~~--------~~~~~~~~---~~~--~~~-----------~~~~~~~i~ 201 (302)
.+|..++.+. +.+++|++.+||+...+ ...++..+ ..+ ..+ ....++|+|
T Consensus 151 ~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 230 (328)
T TIGR01179 151 MSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIH 230 (328)
T ss_pred HHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeee
Confidence 9999887653 23899999999975321 12233322 211 111 013468999
Q ss_pred HhhHHHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHh
Q 022112 202 LDELLPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTE 277 (302)
Q Consensus 202 v~D~a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 277 (302)
++|+++++..+++. ..+++||+++++.+|++|+++.+++.+|.+..+..... .........+|++|++++
T Consensus 231 ~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 304 (328)
T TIGR01179 231 VMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR------RPGDPASLVADASKIRRE 304 (328)
T ss_pred HHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC------CCccccchhcchHHHHHH
Confidence 99999999998864 23579999999999999999999999998765321111 011111335799999999
Q ss_pred CCC--cc-hHHHHHHHHHhhchhhh
Q 022112 278 FPE--LL-SIKESLIKYVFEPNKKT 299 (302)
Q Consensus 278 lg~--~~-~~~e~i~~~~~~~~~~~ 299 (302)
||+ .. +++++| +++++|++++
T Consensus 305 lg~~p~~~~l~~~~-~~~~~~~~~~ 328 (328)
T TIGR01179 305 LGWQPKYTDLEIII-KTAWRWESRN 328 (328)
T ss_pred hCCCCCcchHHHHH-HHHHHHHhcC
Confidence 992 23 499999 8888888764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=234.94 Aligned_cols=258 Identities=16% Similarity=0.130 Sum_probs=189.6
Q ss_pred CcccEEEEE----cCCcchHHHHHHHHHhCCCcEEEeecCCC--------------------------ChhhHHHHHhhc
Q 022112 12 SKPLKFLIY----GRTGWIGGLLGKLCQAQSIDFTYGSGRLE--------------------------NRASLEADIAAV 61 (302)
Q Consensus 12 ~~~~~ilIt----GatG~iG~~l~~~L~~~g~~V~~~~~dl~--------------------------~~~~~~~~~~~~ 61 (302)
.++|+|||| |||||||++|+++|+++||+|+++..+.. |..++..++...
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~ 129 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGA 129 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccC
Confidence 356799999 99999999999999999999998654422 222334444444
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
++|+|||+++.. ..++.+++++|++.+++ +|++||..+|+... ..++.|+++..
T Consensus 130 ~~d~Vi~~~~~~-------------------~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~------~~p~~E~~~~~ 184 (378)
T PLN00016 130 GFDVVYDNNGKD-------------------LDEVEPVADWAKSPGLKQFLFCSSAGVYKKSD------EPPHVEGDAVK 184 (378)
T ss_pred CccEEEeCCCCC-------------------HHHHHHHHHHHHHcCCCEEEEEccHhhcCCCC------CCCCCCCCcCC
Confidence 799999996632 33567899999999985 99999999998654 34566766554
Q ss_pred CCCCchhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCc--hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNP--RNFITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
|. . +|..+|.+++.. ...+++||+++||+..... ..++..+..+.++. .+.++|+|++|+|+++..+
T Consensus 185 p~-~----sK~~~E~~l~~~~l~~~ilRp~~vyG~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~ 259 (378)
T PLN00016 185 PK-A----GHLEVEAYLQKLGVNWTSFRPQYIYGPGNNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALV 259 (378)
T ss_pred Cc-c----hHHHHHHHHHHcCCCeEEEeceeEECCCCCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHH
Confidence 33 2 799999988654 4669999999999864332 23566666665532 2456899999999999999
Q ss_pred HhcC--CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceee---ecCC-CCCccCchhHHHhCC--CcchH
Q 022112 213 AKRN--LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVI---VAPR-SNNELDASKLKTEFP--ELLSI 284 (302)
Q Consensus 213 ~~~~--~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~-~~~~~d~~k~~~~lg--~~~~~ 284 (302)
++++ .+++||+++++.+|+.|+++.+.+.+|.+..+..+......... ...+ ....+|++|++++|| +..++
T Consensus 260 l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~p~~~l 339 (378)
T PLN00016 260 VGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKFDL 339 (378)
T ss_pred hcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCCCCCCH
Confidence 9874 35799999999999999999999999987654333222111000 0111 233579999999999 44599
Q ss_pred HHHHHHHHhhchhhhc
Q 022112 285 KESLIKYVFEPNKKTT 300 (302)
Q Consensus 285 ~e~i~~~~~~~~~~~~ 300 (302)
+|+| ++++++++++.
T Consensus 340 ~egl-~~~~~~~~~~~ 354 (378)
T PLN00016 340 VEDL-KDRYELYFGRG 354 (378)
T ss_pred HHHH-HHHHHHHHhcC
Confidence 9999 88888887654
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=207.74 Aligned_cols=275 Identities=16% Similarity=0.215 Sum_probs=213.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--c-EEE---eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--D-FTY---GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVE 87 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~-V~~---~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~ 87 (302)
+|||||||++|.+|++|.+.+.+.|. + .+. -.+||++.++.+..++..+|.+|||+|+..+ +.......+.+
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~skd~DLt~~a~t~~lF~~ekPthVIhlAAmVG--Glf~N~~ynld 78 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSKDADLTNLADTRALFESEKPTHVIHLAAMVG--GLFHNNTYNLD 78 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccccccccchHHHHHHHhccCCceeeehHhhhc--chhhcCCCchH
Confidence 47999999999999999999999986 2 222 6789999999999999999999999999886 66677788999
Q ss_pred HHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC----
Q 022112 88 TIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN---- 162 (302)
Q Consensus 88 ~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~---- 162 (302)
++..|+....|++..|.+.|++ +|++.|+++|++....|+ ++.+.-..+++|....|+..|+++.-..+.|..
T Consensus 79 F~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPI--dEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg~ 156 (315)
T KOG1431|consen 79 FIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPI--DETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHGR 156 (315)
T ss_pred HHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCC--CHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987 888999999999887776 344444467888877899999988877666543
Q ss_pred -ceEEeeecccCCCCCC-c--hhhHHHHhcc--------ccccc------ccCCcccHhhHHHHHHHHHhcC-CCCeEEe
Q 022112 163 -VCTLRVRMPISSDLSN-P--RNFITKITRY--------EKVVN------IPNSMTILDELLPISIEMAKRN-LTGIWNF 223 (302)
Q Consensus 163 -~~~lR~~~v~g~~~~~-~--~~~~~~~~~~--------~~~~~------~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~ 223 (302)
.+..-|+++|||+... + ...++.+++. ..... -.|.|+|++|+|+++++++.+- .-+.+++
T Consensus 157 ~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~vEpiil 236 (315)
T KOG1431|consen 157 DYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEGVEPIIL 236 (315)
T ss_pred ceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcCccceEe
Confidence 3777899999987532 2 2334443332 21111 2457999999999999999874 3467888
Q ss_pred cCCC--ccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 224 TNPG--VVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 224 ~~~~--~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+.++ .+|++|+++++.++++..-+.. + .. ..........+|++|++++++ .+.+++++| .+..+|..+|
T Consensus 237 s~ge~~EVtI~e~aeaV~ea~~F~G~l~-~--Dt---tK~DGq~kKtasnsKL~sl~pd~~ft~l~~ai-~~t~~Wy~~N 309 (315)
T KOG1431|consen 237 SVGESDEVTIREAAEAVVEAVDFTGKLV-W--DT---TKSDGQFKKTASNSKLRSLLPDFKFTPLEQAI-SETVQWYLDN 309 (315)
T ss_pred ccCccceeEHHHHHHHHHHHhCCCceEE-e--ec---cCCCCCcccccchHHHHHhCCCcccChHHHHH-HHHHHHHHHh
Confidence 8886 8999999999999999875421 0 00 011111245799999999888 677899999 8777776655
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=233.58 Aligned_cols=256 Identities=11% Similarity=0.054 Sum_probs=179.9
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhcC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAVK 62 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~~ 62 (302)
.++|+||||||+||||++|++.|+++|++|++ +.+|++|.+.+.+++. +
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~--~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD--G 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH--h
Confidence 45679999999999999999999999999865 2357888888888888 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CCe-EEEEcCC--ccccCCCCCCCCCCCCCCCCC-
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GLI-LINYATG--CIFEYDSGHPLGSGIGFKEED- 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~v~~SS~--~vy~~~~~~~~~~~~~~~e~~- 137 (302)
+|+|||+|+... ............+.|+.++.+++++|++. +++ +|++||. .+|+....... ..++.|+.
T Consensus 129 ~d~V~hlA~~~~---~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~--~~~i~E~~~ 203 (367)
T PLN02686 129 CAGVFHTSAFVD---PAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDL--PPVIDEESW 203 (367)
T ss_pred ccEEEecCeeec---ccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCC--CcccCCCCC
Confidence 999999999762 21111122345678999999999999986 675 8999886 47764211000 01233332
Q ss_pred ----CCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCC-chhhHHHHhcccc-cc-cccCCcccHhhH
Q 022112 138 ----TPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSN-PRNFITKITRYEK-VV-NIPNSMTILDEL 205 (302)
Q Consensus 138 ----~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~-~~-~~~~~~i~v~D~ 205 (302)
.+..+.++|+.+|..+|.+++.+.. .+++||+++||++... ....+..++.+.. +. +...+|+||+|+
T Consensus 204 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~~~~g~~~~~g~g~~~~v~V~Dv 283 (367)
T PLN02686 204 SDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYLKGAQEMLADGLLATADVERL 283 (367)
T ss_pred CChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHHHhcCCCccCCCCCcCeEEHHHH
Confidence 1222337899999999999876532 3899999999996432 1222334444432 11 233479999999
Q ss_pred HHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCCC
Q 022112 206 LPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPE 280 (302)
Q Consensus 206 a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~ 280 (302)
|++++.+++. ..+++| +++++.++++|+++.+.+.+|.+......... .........+|++|++++|+|
T Consensus 284 a~A~~~al~~~~~~~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~d~~~~~~d~~kl~~~l~~ 356 (367)
T PLN02686 284 AEAHVCVYEAMGNKTAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSS-----SDDTPARFELSNKKLSRLMSR 356 (367)
T ss_pred HHHHHHHHhccCCCCCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchh-----hcCCcccccccHHHHHHHHHH
Confidence 9999999984 234578 78889999999999999999977543211110 011223457899999999983
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=213.06 Aligned_cols=273 Identities=18% Similarity=0.170 Sum_probs=218.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
|+++.||||-||+-|+.|++.|+++||+|++ +.+|++|...+.++++..+||
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 4568999999999999999999999999988 689999999999999999999
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG---LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
.|+|+||.. ++..++..|..+.+++..|+.++|++.+..+ +||...||+..||... ..|..|++|..|
T Consensus 81 EIYNLaAQS---~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~------~~pq~E~TPFyP 151 (345)
T COG1089 81 EIYNLAAQS---HVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQ------EIPQKETTPFYP 151 (345)
T ss_pred hheeccccc---cccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcc------cCccccCCCCCC
Confidence 999999998 6888999999999999999999999999874 4688889999999877 556688888887
Q ss_pred CCCchhhhHHHHHHHHHhhcCceEE--eeecccCCCCCC-chhhHH--------HHhcccc------cccccCCcccHhh
Q 022112 142 VGSFYSKTKAMVEELLKNFENVCTL--RVRMPISSDLSN-PRNFIT--------KITRYEK------VVNIPNSMTILDE 204 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~~~l--R~~~v~g~~~~~-~~~~~~--------~~~~~~~------~~~~~~~~i~v~D 204 (302)
. +||+.+|.-+--+...|.+.+.+ .-+++|...... +..|+. ++..|.. -.+..|||-|..|
T Consensus 152 r-SPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~D 230 (345)
T COG1089 152 R-SPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKD 230 (345)
T ss_pred C-CHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHH
Confidence 6 99999999999888777666443 345556543322 223432 2333332 1246899999999
Q ss_pred HHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceee--------ec---CC----CCCcc
Q 022112 205 LLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVI--------VA---PR----SNNEL 269 (302)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~---~~----~~~~~ 269 (302)
.++++..+++++.+..|.+++++..|++|+++...+..|.++.|..-...+.+... .. .| ....-
T Consensus 231 YVe~mwlmLQq~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llg 310 (345)
T COG1089 231 YVEAMWLMLQQEEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLG 310 (345)
T ss_pred HHHHHHHHHccCCCCceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchhhhhhcC
Confidence 99999999999989999999999999999999999999998887532222221110 11 11 12367
Q ss_pred CchhHHHhCC--CcchHHHHHHHHHhhch
Q 022112 270 DASKLKTEFP--ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 270 d~~k~~~~lg--~~~~~~e~i~~~~~~~~ 296 (302)
|++|+++.|| +..+++|-+ +.|+++-
T Consensus 311 dp~KA~~~LGW~~~~~~~elv-~~Mv~~d 338 (345)
T COG1089 311 DPTKAKEKLGWRPEVSLEELV-REMVEAD 338 (345)
T ss_pred CHHHHHHHcCCccccCHHHHH-HHHHHHH
Confidence 9999999999 567999999 8887653
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=221.31 Aligned_cols=198 Identities=22% Similarity=0.287 Sum_probs=166.9
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|||||||||||++|+++|+++|++|+. +.+|+.|.+.+.++++..++|+|||+|+.. .
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~---~ 77 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS---S 77 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS---S
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccc---c
Confidence 799999999999999999999999776 458899999999999988899999999975 2
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
......++...++.|+.++.+++++|++.++ ++|++||+.+|+... +.+++|+++..|. ++|+.+|...|++
T Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~------~~~~~e~~~~~~~-~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 78 NPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPD------GEPIDEDSPINPL-SPYGASKRAAEEL 150 (236)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSS------SSSBETTSGCCHS-SHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccc-ccccccccccccc
Confidence 2334468889999999999999999999998 699999999999874 6677888888555 8999999999999
Q ss_pred HHhhcC-----ceEEeeecccCCC---CCC---chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcCC--C
Q 022112 157 LKNFEN-----VCTLRVRMPISSD---LSN---PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRNL--T 218 (302)
Q Consensus 157 ~~~~~~-----~~~lR~~~v~g~~---~~~---~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~--~ 218 (302)
++.+.+ .+++||+.+||+. ... ...++..+..+.++. ...++|+|++|+|++++.+++++. +
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 230 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAG 230 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCC
Confidence 977642 3999999999997 111 124677777777422 357899999999999999999876 7
Q ss_pred CeEEec
Q 022112 219 GIWNFT 224 (302)
Q Consensus 219 ~~~~~~ 224 (302)
++||++
T Consensus 231 ~~yNig 236 (236)
T PF01370_consen 231 GIYNIG 236 (236)
T ss_dssp EEEEES
T ss_pred CEEEeC
Confidence 899986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=221.34 Aligned_cols=249 Identities=14% Similarity=0.123 Sum_probs=181.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|||||||||||+|++++++|+++||+|++ +.+|++|++++.++++ ++|+|||+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~--- 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSR--- 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCC---
Confidence 68999999999999999999999999887 4568889999999999 899999987633
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
..++....++|+.++.+++++|++.+++ +|++||..... .+. .+|..+|..+|+
T Consensus 76 -----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~-------------------~~~-~~~~~~K~~~e~ 130 (317)
T CHL00194 76 -----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQ-------------------YPY-IPLMKLKSDIEQ 130 (317)
T ss_pred -----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccc-------------------cCC-ChHHHHHHHHHH
Confidence 1234557788999999999999999985 88888743211 012 568899999999
Q ss_pred HHHhh-cCceEEeeecccCCCCCCchhhHHHHhccccc----ccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCc
Q 022112 156 LLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKV----VNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGV 228 (302)
Q Consensus 156 ~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~ 228 (302)
+++.. .+.+++||+.+|+.- ...+...++.+.+. .....+|+|++|+|++++.+++.+ .+++||+++++.
T Consensus 131 ~l~~~~l~~tilRp~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~ni~g~~~ 207 (317)
T CHL00194 131 KLKKSGIPYTIFRLAGFFQGL---ISQYAIPILEKQPIWITNESTPISYIDTQDAAKFCLKSLSLPETKNKTFPLVGPKS 207 (317)
T ss_pred HHHHcCCCeEEEeecHHhhhh---hhhhhhhhccCCceEecCCCCccCccCHHHHHHHHHHHhcCccccCcEEEecCCCc
Confidence 98765 566999999888631 11222223333222 124678999999999999999754 457999999999
Q ss_pred cCHHHHHHHHHhhcCCCCcccccccccc-------c-eee--ec-C---------C-CCCccCchhHHHhCC-C---cch
Q 022112 229 VSHNEILEMYRQYIDPNFTWKNFTLEEQ-------A-KVI--VA-P---------R-SNNELDASKLKTEFP-E---LLS 283 (302)
Q Consensus 229 ~s~~e~~~~~~~~~g~~~~~~~~~~~~~-------~-~~~--~~-~---------~-~~~~~d~~k~~~~lg-~---~~~ 283 (302)
+|++|+++.+.+.+|.+..+...+.... . ..+ .. . . .....+.+++.+.|| . ..+
T Consensus 208 ~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~ 287 (317)
T CHL00194 208 WNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIFKIDPNELIS 287 (317)
T ss_pred cCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhCCChhhhhh
Confidence 9999999999999998754433322111 0 000 00 0 0 122356788999999 4 358
Q ss_pred HHHHHHHHHhhchh
Q 022112 284 IKESLIKYVFEPNK 297 (302)
Q Consensus 284 ~~e~i~~~~~~~~~ 297 (302)
+++++ ++.+..+.
T Consensus 288 ~~~~~-~~~~~~~~ 300 (317)
T CHL00194 288 LEDYF-QEYFERIL 300 (317)
T ss_pred HHHHH-HHHHHHHH
Confidence 99999 66555443
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=213.17 Aligned_cols=273 Identities=18% Similarity=0.198 Sum_probs=198.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC--CcEEE------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++.+++||||+||+|.+|+++|++++ .++++ ..+|+.+...+..+++ ++ .|
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~--~~-~V 79 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ--GA-VV 79 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc--Cc-eE
Confidence 45589999999999999999999998 55554 4588888888888988 78 88
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC--C
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV--G 143 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~--~ 143 (302)
+|||+.. .+.....+++..+++|+.||.+++++|++.+++ +||+||..|+.+... ....+++.+.|. .
T Consensus 80 vh~aa~~---~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~------~~n~~E~~p~p~~~~ 150 (361)
T KOG1430|consen 80 VHCAASP---VPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEP------IINGDESLPYPLKHI 150 (361)
T ss_pred EEecccc---CccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCee------cccCCCCCCCccccc
Confidence 8888866 344455579999999999999999999999997 999999998766542 122333333332 2
Q ss_pred CchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCchh-hHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNPRN-FITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~~~-~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
++|+.+|..+|.++.+... .+.|||+.+||++....-. .+..+..+.... ....++++++.++.+++.+
T Consensus 151 d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA 230 (361)
T KOG1430|consen 151 DPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILA 230 (361)
T ss_pred cccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHH
Confidence 5999999999999977653 3899999999986533322 333333443322 2356789999898888775
Q ss_pred Hhc-------CCCCeEEecCCCccCHHHHHHHHHhhcCCCCc-ccccccccc--------------c--eeeecCC----
Q 022112 213 AKR-------NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFT-WKNFTLEEQ--------------A--KVIVAPR---- 264 (302)
Q Consensus 213 ~~~-------~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~-~~~~~~~~~--------------~--~~~~~~~---- 264 (302)
... ..+++|++.++.++...++...+.+.+|...+ +..++.... . .+.....
T Consensus 231 ~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~ 310 (361)
T KOG1430|consen 231 ARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVAL 310 (361)
T ss_pred HHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheee
Confidence 532 23469999999999888888899999997765 221111000 0 0000000
Q ss_pred --CCCccCchhHHHhCC--CcchHHHHHHHHHhhchhh
Q 022112 265 --SNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 265 --~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~ 298 (302)
....+|+.|+++.|| +..+++|++ +.++.+...
T Consensus 311 ~~~~~~f~~~kA~~~lgY~P~~~~~e~~-~~~~~~~~~ 347 (361)
T KOG1430|consen 311 LGVTRTFSIEKAKRELGYKPLVSLEEAI-QRTIHWVAS 347 (361)
T ss_pred eccccccCHHHHHHhhCCCCcCCHHHHH-HHHHHHHhh
Confidence 144789999999999 778999999 777766543
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=219.01 Aligned_cols=238 Identities=16% Similarity=0.164 Sum_probs=178.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEE----------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY----------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+|+||||||+||||++|+++|+++| ++|++ +.+|++|.+.+.++++ ++|+|||+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~--~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALR--GVDYVVHA 81 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHh--cCCEEEEC
Confidence 5689999999999999999999986 66654 4578899999998888 79999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
|+... ......++...+++|+.++.+++++|++.++ ++|++||...+ .| .++|+.
T Consensus 82 Ag~~~---~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~--------------------~p-~~~Y~~ 137 (324)
T TIGR03589 82 AALKQ---VPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAA--------------------NP-INLYGA 137 (324)
T ss_pred cccCC---CchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC--------------------CC-CCHHHH
Confidence 99762 3334456778999999999999999999886 48998884321 12 378999
Q ss_pred hHHHHHHHHHhhc--------CceEEeeecccCCCCCCchhhHHHHhccc-ccc----cccCCcccHhhHHHHHHHHHhc
Q 022112 149 TKAMVEELLKNFE--------NVCTLRVRMPISSDLSNPRNFITKITRYE-KVV----NIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 149 ~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
+|..+|.+++.+. +..++||+++||+.....+.|...+..+. ... .+.++|+|++|++++++.++++
T Consensus 138 sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~ 217 (324)
T TIGR03589 138 TKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGSVVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLER 217 (324)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCCcHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhh
Confidence 9999999886532 22889999999985433344555555554 221 2467899999999999999987
Q ss_pred CCC-CeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCC-CCCccCchhHHHhCC--CcchHHHHH
Q 022112 216 NLT-GIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFP--ELLSIKESL 288 (302)
Q Consensus 216 ~~~-~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg--~~~~~~e~i 288 (302)
..+ ++| ++++..+++.|+++.+.+....... . ...... ....+|++|+++.+| +..++++++
T Consensus 218 ~~~~~~~-~~~~~~~sv~el~~~i~~~~~~~~~--~--------~~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~ 283 (324)
T TIGR03589 218 MLGGEIF-VPKIPSMKITDLAEAMAPECPHKIV--G--------IRPGEKLHEVMITEDDARHTYELGDYYAILPSI 283 (324)
T ss_pred CCCCCEE-ccCCCcEEHHHHHHHHHhhCCeeEe--C--------CCCCchhHhhhcChhhhhhhcCCCCeEEEcccc
Confidence 533 467 5666789999999999986432211 0 011111 123579999999999 566888887
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=213.57 Aligned_cols=260 Identities=17% Similarity=0.134 Sum_probs=176.0
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-------------hhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-------------ASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-------------~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
|||||||||||+++++.|+++|++|+++..+.... ..+...+. ++|+|||+|+.... ...+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~-~~~~~~~ 77 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIA-DKRWTEE 77 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcC--CCCEEEECCCCCcc-cccCCHH
Confidence 69999999999999999999999999866553321 12223344 79999999996520 0112334
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCe---EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLI---LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~---~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
.+....+.|+.++.+++++|++.+++ +|+.||..+|+... +.++.|+.++.+. +.|+..+...|..+...
T Consensus 78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~------~~~~~E~~~~~~~-~~~~~~~~~~e~~~~~~ 150 (292)
T TIGR01777 78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSE------DRVFTEEDSPAGD-DFLAELCRDWEEAAQAA 150 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCC------CCCcCcccCCCCC-ChHHHHHHHHHHHhhhc
Confidence 56778899999999999999999862 44445556788654 4567777754333 56667676677665432
Q ss_pred ----cCceEEeeecccCCCCCCchhhHHHHh--ccccc--ccccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCH
Q 022112 161 ----ENVCTLRVRMPISSDLSNPRNFITKIT--RYEKV--VNIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSH 231 (302)
Q Consensus 161 ----~~~~~lR~~~v~g~~~~~~~~~~~~~~--~~~~~--~~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~ 231 (302)
.+.+++||+.+||++......+...+. .+... ....++|+|++|+|+++..+++++ ..++||+++++.+|+
T Consensus 151 ~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g~~~~~~~~~~s~ 230 (292)
T TIGR01777 151 EDLGTRVVLLRTGIVLGPKGGALAKMLPPFRLGLGGPLGSGRQWFSWIHIEDLVQLILFALENASISGPVNATAPEPVRN 230 (292)
T ss_pred hhcCCceEEEeeeeEECCCcchhHHHHHHHhcCcccccCCCCcccccEeHHHHHHHHHHHhcCcccCCceEecCCCccCH
Confidence 234999999999985421122221111 11111 235679999999999999999873 567999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccccccee----eecCCCCCccCchhHHHhCC---CcchHHHHH
Q 022112 232 NEILEMYRQYIDPNFTWKNFTLEEQAKV----IVAPRSNNELDASKLKTEFP---ELLSIKESL 288 (302)
Q Consensus 232 ~e~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~k~~~~lg---~~~~~~e~i 288 (302)
.|+++.+.+.+|.+..+ .++....... ........+.+++|+++ +| .+++++|++
T Consensus 231 ~di~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 231 KEFAKALARALHRPAFF-PVPAFVLRALLGEMADLLLKGQRVLPEKLLE-AGFQFQYPDLDEAL 292 (292)
T ss_pred HHHHHHHHHHhCCCCcC-cCCHHHHHHHhchhhHHHhCCcccccHHHHh-cCCeeeCcChhhcC
Confidence 99999999999976432 2222211110 00111245789999986 88 334677653
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=229.98 Aligned_cols=268 Identities=12% Similarity=0.140 Sum_probs=186.8
Q ss_pred cEEEEEcCCcchHHHHHHHHH--hCCCcEEEe------------------------ecCCCCh------hhHHHHHhhcC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQ--AQSIDFTYG------------------------SGRLENR------ASLEADIAAVK 62 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~--~~g~~V~~~------------------------~~dl~~~------~~~~~~~~~~~ 62 (302)
|+|||||||||||++|+++|+ +.|++|+++ .+|++|+ +.+..+ + +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~--~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-G--D 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-c--C
Confidence 689999999999999999999 578888773 3466653 233333 4 8
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCC--
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTP-- 139 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~-- 139 (302)
+|+|||||+... . ...+....++|+.++.+++++|++.+++ +|++||..+||... .++.|++..
T Consensus 78 ~D~Vih~Aa~~~---~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~-------~~~~e~~~~~~ 144 (657)
T PRK07201 78 IDHVVHLAAIYD---L---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYE-------GVFREDDFDEG 144 (657)
T ss_pred CCEEEECceeec---C---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCcc-------Cccccccchhh
Confidence 999999999762 1 2245667889999999999999998765 99999999998542 233444321
Q ss_pred CCCCCchhhhHHHHHHHHHhh--cCceEEeeecccCCCCCCc------hhh----HHHHhcccccc------cccCCccc
Q 022112 140 NFVGSFYSKTKAMVEELLKNF--ENVCTLRVRMPISSDLSNP------RNF----ITKITRYEKVV------NIPNSMTI 201 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~--~~~~~lR~~~v~g~~~~~~------~~~----~~~~~~~~~~~------~~~~~~i~ 201 (302)
..+.+.|+.+|.++|+++++. ...+++||+++||+...+. ..+ +..+....... ....+++|
T Consensus 145 ~~~~~~Y~~sK~~~E~~~~~~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (657)
T PRK07201 145 QGLPTPYHRTKFEAEKLVREECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVP 224 (657)
T ss_pred cCCCCchHHHHHHHHHHHHHcCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeeeee
Confidence 112368999999999998753 3459999999999754321 111 22221111101 12457999
Q ss_pred HhhHHHHHHHHHhcC--CCCeEEecCCCccCHHHHHHHHHhhcCCCC---cccccccccc---ce-------------ee
Q 022112 202 LDELLPISIEMAKRN--LTGIWNFTNPGVVSHNEILEMYRQYIDPNF---TWKNFTLEEQ---AK-------------VI 260 (302)
Q Consensus 202 v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~---~~~~~~~~~~---~~-------------~~ 260 (302)
++|+++++..+++.+ .+++||+++++++++.|+++.+.+.+|.+. ....++.... .. ..
T Consensus 225 vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 304 (657)
T PRK07201 225 VDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQ 304 (657)
T ss_pred HHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHh
Confidence 999999999988753 356999999999999999999999999875 2221111000 00 00
Q ss_pred ec--------CCCCCccCchhHHHhC---C-CcchHHHHHHHHHhhchhhh
Q 022112 261 VA--------PRSNNELDASKLKTEF---P-ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 261 ~~--------~~~~~~~d~~k~~~~l---g-~~~~~~e~i~~~~~~~~~~~ 299 (302)
.. ......+|++|+++.| | ..+++.+.+ ..+++++.++
T Consensus 305 ~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p~~~~~~-~~~~~~~~~~ 354 (657)
T PRK07201 305 LGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVPRLASYA-PRLWDYWERH 354 (657)
T ss_pred cCCCHHHHHhccCCCeeccHHHHHHhccCCcCCCChHHHH-HHHHHHHHhc
Confidence 00 0012378999999998 4 778899999 7777766544
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=226.69 Aligned_cols=234 Identities=14% Similarity=0.168 Sum_probs=175.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
|||||||||||||++++++|+++|++|++ +.+|+.|.+.+.++++ ++|+|||+|+... .
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~--~vD~VVHlAa~~~---~- 74 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMT--GADVVAHCAWVRG---R- 74 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHh--CCCEEEECCCccc---c-
Confidence 68999999999999999999999999876 4578889999999888 7999999998651 1
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHH
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLK 158 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~ 158 (302)
..++|+.++.+++++|++.+++ +|++||.. |..+|+++.
T Consensus 75 --------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------------------------K~aaE~ll~ 114 (854)
T PRK05865 75 --------NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------------------------QPRVEQMLA 114 (854)
T ss_pred --------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--------------------------------HHHHHHHHH
Confidence 4678999999999999998875 88888721 888999886
Q ss_pred hh-cCceEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCccCH
Q 022112 159 NF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVVSH 231 (302)
Q Consensus 159 ~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~ 231 (302)
.+ .+.+++|++++||++ ...++..++...... ...++|+|++|+|+++..++++. .+++||+++++.+|+
T Consensus 115 ~~gl~~vILRp~~VYGP~---~~~~i~~ll~~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~ggvyNIgsg~~~Si 191 (854)
T PRK05865 115 DCGLEWVAVRCALIFGRN---VDNWVQRLFALPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSGPVNLAAPGELTF 191 (854)
T ss_pred HcCCCEEEEEeceEeCCC---hHHHHHHHhcCceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCCeEEEECCCcccH
Confidence 55 566999999999984 344565554322111 13458999999999999998653 457999999999999
Q ss_pred HHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 232 NEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 232 ~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+|+++.+.+.... +... ........ ..........+|++|+++.|| +..+++++| ++++++++...
T Consensus 192 ~EIae~l~~~~~~v~~~~-~~~~~~~~-~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL-~dti~~~r~ri 260 (854)
T PRK05865 192 RRIAAALGRPMVPIGSPV-LRRVTSFA-ELELLHSAPLMDVTLLRDRWGFQPAWNAEECL-EDFTLAVRGRI 260 (854)
T ss_pred HHHHHHHhhhhccCCchh-hhhccchh-hhhcccCCccCCHHHHHHHhCCCCCCCHHHHH-HHHHHHHHhhc
Confidence 9999998875321 1000 00000000 000001123689999999999 456899999 99999987643
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=220.10 Aligned_cols=221 Identities=19% Similarity=0.190 Sum_probs=160.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc------------------------------------------------EEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID------------------------------------------------FTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~------------------------------------------------V~~~~ 45 (302)
.++|||||||||||++|++.|++.+.+ |..+.
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~ 90 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVP 90 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEe
Confidence 468999999999999999998875322 23355
Q ss_pred cCCC-------ChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CCe-EEEEcCC
Q 022112 46 GRLE-------NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GLI-LINYATG 116 (302)
Q Consensus 46 ~dl~-------~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~v~~SS~ 116 (302)
+|++ +.+.+..+++ ++|+|||+|+... . ..++...+++|+.++.+++++|++. +++ +|++||+
T Consensus 91 GDl~~~~LGLs~~~~~~~l~~--~vD~ViH~AA~v~---~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~ 162 (491)
T PLN02996 91 GDISYDDLGVKDSNLREEMWK--EIDIVVNLAATTN---F---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTA 162 (491)
T ss_pred cccCCcCCCCChHHHHHHHHh--CCCEEEECccccC---C---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeee
Confidence 6765 3344556666 7999999999762 2 2467889999999999999999986 555 9999999
Q ss_pred ccccCCCCCCCCCCCCCCCCC-----------------------------------------------CCCCCCCchhhh
Q 022112 117 CIFEYDSGHPLGSGIGFKEED-----------------------------------------------TPNFVGSFYSKT 149 (302)
Q Consensus 117 ~vy~~~~~~~~~~~~~~~e~~-----------------------------------------------~~~~~~~~Y~~~ 149 (302)
+|||....... +.++++.. ...++ +.|+.+
T Consensus 163 ~vyG~~~~~i~--E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-n~Y~~T 239 (491)
T PLN02996 163 YVCGEKSGLIL--EKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWP-NTYVFT 239 (491)
T ss_pred EEecCCCceee--eecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCC-CchHhh
Confidence 99986432110 22222110 11133 689999
Q ss_pred HHHHHHHHHhhcC---ceEEeeecccCCCCCCchhhH----------HHHhccccc-----ccccCCcccHhhHHHHHHH
Q 022112 150 KAMVEELLKNFEN---VCTLRVRMPISSDLSNPRNFI----------TKITRYEKV-----VNIPNSMTILDELLPISIE 211 (302)
Q Consensus 150 K~~~E~~~~~~~~---~~~lR~~~v~g~~~~~~~~~~----------~~~~~~~~~-----~~~~~~~i~v~D~a~~~~~ 211 (302)
|.++|+++..+.. .+++||++++|+.....+.|+ ..+..+... ....+|++||+|++++++.
T Consensus 240 K~~aE~lv~~~~~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~ 319 (491)
T PLN02996 240 KAMGEMLLGNFKENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIV 319 (491)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHH
Confidence 9999999977643 399999999997543222222 222333321 1257899999999999999
Q ss_pred HHhcC-----CCCeEEecCC--CccCHHHHHHHHHhhcCCC
Q 022112 212 MAKRN-----LTGIWNFTNP--GVVSHNEILEMYRQYIDPN 245 (302)
Q Consensus 212 ~~~~~-----~~~~~~~~~~--~~~s~~e~~~~~~~~~g~~ 245 (302)
++.+. ..++||++++ .++|+.|+++.+.+.++..
T Consensus 320 a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~ 360 (491)
T PLN02996 320 AMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKN 360 (491)
T ss_pred HHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhC
Confidence 88652 2458999998 8899999999999988743
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=205.52 Aligned_cols=246 Identities=9% Similarity=0.024 Sum_probs=169.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
+++|||||||||||++++++|+++||+|++ +.+|++|.+++.+++. ++|.|+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~--~~d~v~ 83 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK--GCSGLF 83 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc--CCCEEE
Confidence 458999999999999999999999999876 2346777888888888 899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCC-CCCCCCCCCCCCCCCCCCC---
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYD-SGHPLGSGIGFKEEDTPNF--- 141 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~-~~~~~~~~~~~~e~~~~~~--- 141 (302)
|+++... . ...++...+++|+.++.+++++|.+. ++ ++|++||...+... ...+. ..+++|+.+..+
T Consensus 84 ~~~~~~~---~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~--~~~~~E~~~~~~~~~ 156 (297)
T PLN02583 84 CCFDPPS---D--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNIST--QKDVDERSWSDQNFC 156 (297)
T ss_pred EeCccCC---c--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCC--CCCCCcccCCCHHHH
Confidence 9876541 1 11245788999999999999999886 45 59999998764321 11000 335566543221
Q ss_pred --CCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCchhhHHHHhcccc--cccccCCcccHhhHHHHHHHH
Q 022112 142 --VGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNPRNFITKITRYEK--VVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 142 --~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~D~a~~~~~~ 212 (302)
....|+.+|..+|+.++.+. +.+++||+++||+....... .+.+.. ......+|+|++|+|++++.+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~----~~~~~~~~~~~~~~~~v~V~Dva~a~~~a 232 (297)
T PLN02583 157 RKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP----YLKGAAQMYENGVLVTVDVNFLVDAHIRA 232 (297)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh----hhcCCcccCcccCcceEEHHHHHHHHHHH
Confidence 11379999999999997653 23889999999986532211 222211 112345799999999999999
Q ss_pred HhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC
Q 022112 213 AKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 213 ~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
++.+ ..+.|+++++....+.++++++.+.+..- ++. ..... .........++++|+++ ||
T Consensus 233 l~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~-~~~---~~~~~--~~~~~~~~~~~~~k~~~-l~ 293 (297)
T PLN02583 233 FEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLI-PSP---PPYEM--QGSEVYQQRIRNKKLNK-LM 293 (297)
T ss_pred hcCcccCCcEEEecCCCccHHHHHHHHHHhCCCC-CCC---Ccccc--cCCCccccccChHHHHH-hC
Confidence 9975 34689888866666788999999987532 111 00000 00111234689999977 66
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=202.86 Aligned_cols=205 Identities=19% Similarity=0.233 Sum_probs=161.8
Q ss_pred EEEEcCCcchHHHHHHHHHhCCC-cEEE------------------------------eecCCCChhhHHHHHhhcCCCE
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSI-DFTY------------------------------GSGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~-~V~~------------------------------~~~dl~~~~~~~~~~~~~~~d~ 65 (302)
||||||+|.||+.|+++|++.+. ++++ +.+|+.|.+.+..+++..+||+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 79999999999999999999864 4444 3678999999999999999999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|||+||+- ++.-++.+|.+.+++|+.|+.|++++|.+++++ +|++||..... |. +
T Consensus 81 VfHaAA~K---hVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~--------------------Pt-n 136 (293)
T PF02719_consen 81 VFHAAALK---HVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVN--------------------PT-N 136 (293)
T ss_dssp EEE---------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS-----------------------S
T ss_pred EEEChhcC---CCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCC--------------------CC-c
Confidence 99999998 688889999999999999999999999999986 99999965432 33 8
Q ss_pred chhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHH
Q 022112 145 FYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~ 212 (302)
.||.+|+.+|.++.++... ..+|+++|.|.+.+..+.|..++.++.++. +..|=|+.+++.++.++.+
T Consensus 137 vmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a 216 (293)
T PF02719_consen 137 VMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQA 216 (293)
T ss_dssp HHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEEECETT-EEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcceeCCCCcEEEEecHHHHHHHHHHH
Confidence 9999999999998775432 789999999988878899999999998854 3567799999999999998
Q ss_pred HhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCC
Q 022112 213 AKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPN 245 (302)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~ 245 (302)
..... +++|.+--|+++++.|+++.+.+..|..
T Consensus 217 ~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 217 AALAKGGEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHH--TTEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HhhCCCCcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 88754 4599999999999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-27 Score=188.91 Aligned_cols=268 Identities=18% Similarity=0.185 Sum_probs=185.5
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
|+|||||||||++|+..|.+.||+|+++.++.... +.+.+.... ++|+|||+||..- ..-.|.....
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~-~~DavINLAG~~I-~~rrWt~~~K 78 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTL-GIDAVINLAGEPI-AERRWTEKQK 78 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccC-CCCEEEECCCCcc-ccccCCHHHH
Confidence 68999999999999999999999999977764322 222222221 6999999999762 1122677788
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC--ccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh--
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLI-LINYATG--CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-- 160 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~--~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-- 160 (302)
+..++-.+..|..|.++..+...+ -+++|.+ ..||... +..++|++++.. ..-+.....-|+.....
T Consensus 79 ~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~------~~~~tE~~~~g~--~Fla~lc~~WE~~a~~a~~ 150 (297)
T COG1090 79 EEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSG------DRVVTEESPPGD--DFLAQLCQDWEEEALQAQQ 150 (297)
T ss_pred HHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCC------ceeeecCCCCCC--ChHHHHHHHHHHHHhhhhh
Confidence 899999999999999999866443 4555544 5699876 778899965532 33344444555554332
Q ss_pred --cCceEEeeecccCCCCCCchhhHHH--Hhccccc--ccccCCcccHhhHHHHHHHHHhc-CCCCeEEecCCCccCHHH
Q 022112 161 --ENVCTLRVRMPISSDLSNPRNFITK--ITRYEKV--VNIPNSMTILDELLPISIEMAKR-NLTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 161 --~~~~~lR~~~v~g~~~~~~~~~~~~--~~~~~~~--~~~~~~~i~v~D~a~~~~~~~~~-~~~~~~~~~~~~~~s~~e 233 (302)
.+.+.+|.++|.++....-..++.. +--|.+. -.++.+|||++|+++++..++++ ...|.||++++.+++.++
T Consensus 151 ~gtRvvllRtGvVLs~~GGaL~~m~~~fk~glGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~lsGp~N~taP~PV~~~~ 230 (297)
T COG1090 151 LGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWIHIEDLVNAILFLLENEQLSGPFNLTAPNPVRNKE 230 (297)
T ss_pred cCceEEEEEEEEEecCCCcchhhhcchhhhccCCccCCCCceeeeeeHHHHHHHHHHHHhCcCCCCcccccCCCcCcHHH
Confidence 2348899999999754322223222 2223332 24788999999999999999998 578999999999999999
Q ss_pred HHHHHHhhcCCCCcc--cccccccc-ceeeecCCCCCccCchhHHHh-CC-CcchHHHHHHHHHhhc
Q 022112 234 ILEMYRQYIDPNFTW--KNFTLEEQ-AKVIVAPRSNNELDASKLKTE-FP-ELLSIKESLIKYVFEP 295 (302)
Q Consensus 234 ~~~~~~~~~g~~~~~--~~~~~~~~-~~~~~~~~~~~~~d~~k~~~~-lg-~~~~~~e~i~~~~~~~ 295 (302)
|.+.++++++++... +.+..... +.....-...+++=+.|+.+. +. .+++++++| ++++..
T Consensus 231 F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~~AL-~~il~~ 296 (297)
T COG1090 231 FAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLEEAL-ADILKR 296 (297)
T ss_pred HHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHHHHH-HHHHhc
Confidence 999999999977432 11111100 000000002446667788774 33 789999999 887653
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=205.48 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=181.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
+++||||||+|-||+.+++++++.+..-+. +.+|+.|.+.+..+++.+++|+|
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V 329 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV 329 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence 468999999999999999999998654332 77999999999999998889999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
||+||+- ++.-++.+|.+.+++|+.||.|++++|.+.+++ +|.+||.... .|. +.
T Consensus 330 fHAAA~K---HVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV--------------------~Pt-Nv 385 (588)
T COG1086 330 FHAAALK---HVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAV--------------------NPT-NV 385 (588)
T ss_pred EEhhhhc---cCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCccc--------------------CCc-hH
Confidence 9999998 677889999999999999999999999999997 9999996432 234 89
Q ss_pred hhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHHH
Q 022112 146 YSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~ 213 (302)
||.+|+++|.++.++.+ .+.+|+|+|.|...+..+.|.+++.+|.++. +..|=|+.+.|.++.++.+.
T Consensus 386 mGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~ 465 (588)
T COG1086 386 MGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAG 465 (588)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHH
Confidence 99999999999876643 2789999999998878899999999998854 35677999999999999998
Q ss_pred hcCCC-CeEEecCCCccCHHHHHHHHHhhcC
Q 022112 214 KRNLT-GIWNFTNPGVVSHNEILEMYRQYID 243 (302)
Q Consensus 214 ~~~~~-~~~~~~~~~~~s~~e~~~~~~~~~g 243 (302)
....+ ++|-+--|+++++.|+++.+.+.+|
T Consensus 466 a~~~gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 466 AIAKGGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred hhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 87655 4999999999999999999999998
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-26 Score=200.33 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=161.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc--CC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV--KP 63 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~--~~ 63 (302)
.++|+|||||||||||++++++|+++|++|++ +.+|++|++++..+++.. ++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~ 137 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV 137 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence 34679999999999999999999999998875 346788889999888854 59
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+||||++... ......+++|+.++.+++++|++.+++ +|++||.++|+ +
T Consensus 138 D~Vi~~aa~~~--------~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~---------------------p 188 (390)
T PLN02657 138 DVVVSCLASRT--------GGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK---------------------P 188 (390)
T ss_pred cEEEECCccCC--------CCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC---------------------c
Confidence 99999988541 012245678999999999999999876 99999987654 1
Q ss_pred CCchhhhHHHHHHHHHh---hcCceEEeeecccCCCCCCchhhHHHHhcccccc---c--ccC-CcccHhhHHHHHHHHH
Q 022112 143 GSFYSKTKAMVEELLKN---FENVCTLRVRMPISSDLSNPRNFITKITRYEKVV---N--IPN-SMTILDELLPISIEMA 213 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~---~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~---~--~~~-~~i~v~D~a~~~~~~~ 213 (302)
...|..+|...|+.+.. -.+++++||+.+|+. ...++..+..+.+.. + ..+ +++|++|+|++++.++
T Consensus 189 ~~~~~~sK~~~E~~l~~~~~gl~~tIlRp~~~~~~----~~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~ 264 (390)
T PLN02657 189 LLEFQRAKLKFEAELQALDSDFTYSIVRPTAFFKS----LGGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCV 264 (390)
T ss_pred chHHHHHHHHHHHHHHhccCCCCEEEEccHHHhcc----cHHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHH
Confidence 25688999999998864 245699999999974 233555565655432 1 222 5799999999999988
Q ss_pred hcC--CCCeEEecCC-CccCHHHHHHHHHhhcCCCCccccc
Q 022112 214 KRN--LTGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 214 ~~~--~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
..+ .+++||++++ +.+|++|+++.+.+.+|.++.+..+
T Consensus 265 ~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~v 305 (390)
T PLN02657 265 LDESKINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKV 305 (390)
T ss_pred hCccccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEc
Confidence 653 4579999986 6899999999999999987654433
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=190.65 Aligned_cols=217 Identities=17% Similarity=0.183 Sum_probs=156.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhCC--CcEEEee-----------------------------------cCCCCh------h
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQS--IDFTYGS-----------------------------------GRLENR------A 52 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g--~~V~~~~-----------------------------------~dl~~~------~ 52 (302)
+|||||||||||++|++.|+++| .+|+++. +|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 4466533 343322 2
Q ss_pred hHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCC
Q 022112 53 SLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 53 ~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
.+..... ++|+|||+|+... .........+.|+.++.+++++|.+.+++ ++++||.++|+.....
T Consensus 81 ~~~~~~~--~~d~vih~a~~~~------~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~------ 146 (367)
T TIGR01746 81 EWERLAE--NVDTIVHNGALVN------WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLS------ 146 (367)
T ss_pred HHHHHHh--hCCEEEeCCcEec------cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCC------
Confidence 3344444 7999999999762 12345567789999999999999998876 9999999999864321
Q ss_pred CCCCCCCC----CCCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCC---chhhHHHHhcc----cccc--c
Q 022112 132 GFKEEDTP----NFVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSN---PRNFITKITRY----EKVV--N 194 (302)
Q Consensus 132 ~~~e~~~~----~~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~---~~~~~~~~~~~----~~~~--~ 194 (302)
+..|+++. ..+.+.|+.+|..+|.+++.+. ...++||+.++|+...+ ...++..++.. .... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~ 226 (367)
T TIGR01746 147 TVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYPDSP 226 (367)
T ss_pred CccccccccccccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCCCCC
Confidence 12222221 1123689999999999987653 33899999999963222 23344333321 1111 1
Q ss_pred -ccCCcccHhhHHHHHHHHHhcCC----CCeEEecCCCccCHHHHHHHHHhhcCCCCc
Q 022112 195 -IPNSMTILDELLPISIEMAKRNL----TGIWNFTNPGVVSHNEILEMYRQYIDPNFT 247 (302)
Q Consensus 195 -~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~ 247 (302)
...+++|++|++++++.++..+. +++||+++++.+++.|+++.+.+ .|.+..
T Consensus 227 ~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 227 ELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred ccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 24679999999999999887643 56999999999999999999999 787654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=169.83 Aligned_cols=269 Identities=20% Similarity=0.177 Sum_probs=206.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
+..||||-||+-|+.|++.|+.+||+|.+ ..+|++|...+.+++...+|+
T Consensus 29 kvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikPt 108 (376)
T KOG1372|consen 29 KVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKPT 108 (376)
T ss_pred eEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCch
Confidence 35899999999999999999999999988 679999999999999999999
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
-|+|+|+.. ++..+++-|+.+.++...|+++||++.+.+ ++||-..||+..||... +.|-.|.+|..
T Consensus 109 EiYnLaAQS---HVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~------e~PQsE~TPFy 179 (376)
T KOG1372|consen 109 EVYNLAAQS---HVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQ------EIPQSETTPFY 179 (376)
T ss_pred hhhhhhhhc---ceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhccccc------CCCcccCCCCC
Confidence 999999988 688888999999999999999999999987 46788889999999776 55668888888
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--eEEeeecccCCCCC-CchhhHHH-Hhcc-------cc------cccccCCcccHh
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--CTLRVRMPISSDLS-NPRNFITK-ITRY-------EK------VVNIPNSMTILD 203 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--~~lR~~~v~g~~~~-~~~~~~~~-~~~~-------~~------~~~~~~~~i~v~ 203 (302)
|. ++|+.+|..+--++-.|.+. ....-+++|..... .+.+|+.+ +.+. .. -....+||-|..
T Consensus 180 PR-SPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~ 258 (376)
T KOG1372|consen 180 PR-SPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAG 258 (376)
T ss_pred CC-ChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhH
Confidence 76 99999998766554444333 22333555554332 22345433 3222 11 112478999999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccce-----e-----eecCCC----CCcc
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAK-----V-----IVAPRS----NNEL 269 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~-----~-----~~~~~~----~~~~ 269 (302)
|...++..++++..+.-|-++.++..|++||++.....+|..+.|..-....... . ....|+ ...-
T Consensus 259 dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~LqG 338 (376)
T KOG1372|consen 259 DYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQG 338 (376)
T ss_pred HHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccCcchhhhhcC
Confidence 9999999999999889999999999999999999999999777775322211100 0 111111 3357
Q ss_pred CchhHHHhCC--CcchHHHHHHHHHhh
Q 022112 270 DASKLKTEFP--ELLSIKESLIKYVFE 294 (302)
Q Consensus 270 d~~k~~~~lg--~~~~~~e~i~~~~~~ 294 (302)
|.+|+++.|| +..++.+-+ ++|+.
T Consensus 339 dasKAk~~LgW~pkv~f~eLV-keMv~ 364 (376)
T KOG1372|consen 339 DASKAKKTLGWKPKVTFPELV-KEMVA 364 (376)
T ss_pred ChHHHHHhhCCCCccCHHHHH-HHHHH
Confidence 9999999999 455888888 65553
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=193.91 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=139.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
||||||||+||||++|++.|+++||+|++ +.+|+++.. +.+++. ++|+|||+|+... .
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~~~~ve~v~~Dl~d~~-l~~al~--~~D~VIHLAa~~~----~ 73 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDALDPRVDYVCASLRNPV-LQELAG--EADAVIHLAPVDT----S 73 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcccCCceEEEccCCCHH-HHHHhc--CCCEEEEcCccCc----c
Confidence 68999999999999999999999999886 456777764 666666 7999999998541 1
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHh
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
. ...+|+.++.+++++|++.++++|++||. +|.. ..|. .+|.++..
T Consensus 74 ----~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~---------------------~~~~----~aE~ll~~ 119 (699)
T PRK12320 74 ----A---PGGVGITGLAHVANAAARAGARLLFVSQA--AGRP---------------------ELYR----QAETLVST 119 (699)
T ss_pred ----c---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCC---------------------cccc----HHHHHHHh
Confidence 1 12479999999999999999999999875 3311 1122 46776654
Q ss_pred -hcCceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHH
Q 022112 160 -FENVCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEM 237 (302)
Q Consensus 160 -~~~~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~ 237 (302)
..+.+++|++++||+.... ...++..++... .......++|++|++++++.+++.+..|+||+++++.+|+.|+++.
T Consensus 120 ~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~-~~~~pI~vIyVdDvv~alv~al~~~~~GiyNIG~~~~~Si~el~~~ 198 (699)
T PRK12320 120 GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSK-VSARPIRVLHLDDLVRFLVLALNTDRNGVVDLATPDTTNVVTAWRL 198 (699)
T ss_pred cCCCEEEEeCceecCCCCcccHhHHHHHHHHHH-HcCCceEEEEHHHHHHHHHHHHhCCCCCEEEEeCCCeeEHHHHHHH
Confidence 3567999999999985422 123444444321 1122233589999999999999876668999999999999999988
Q ss_pred HHhh
Q 022112 238 YRQY 241 (302)
Q Consensus 238 ~~~~ 241 (302)
+...
T Consensus 199 i~~~ 202 (699)
T PRK12320 199 LRSV 202 (699)
T ss_pred HHHh
Confidence 8776
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=185.84 Aligned_cols=221 Identities=14% Similarity=0.106 Sum_probs=151.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcE---EE---------------------------------------------ee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDF---TY---------------------------------------------GS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V---~~---------------------------------------------~~ 45 (302)
.++|||||||||||++|++.|++.+.+| ++ +.
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~ 198 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVV 198 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEE
Confidence 4789999999999999999999765432 22 44
Q ss_pred cCCCCh------hhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-Ce-EEEEcCCc
Q 022112 46 GRLENR------ASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LI-LINYATGC 117 (302)
Q Consensus 46 ~dl~~~------~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~v~~SS~~ 117 (302)
+|++++ +..+.+.+ ++|+|||+|+... ...++...+++|+.++.+++++|++.+ .+ +|++||.+
T Consensus 199 GDl~d~~LGLs~~~~~~L~~--~vDiVIH~AA~v~------f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 199 GNVCESNLGLEPDLADEIAK--EVDVIINSAANTT------FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred eeCCCcccCCCHHHHHHHHh--cCCEEEECccccc------cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence 666665 23444444 6999999999762 224678899999999999999998864 44 99999999
Q ss_pred cccCCCCCCCCCCCCCCCC---------------------------------C--------------------CCCCCCC
Q 022112 118 IFEYDSGHPLGSGIGFKEE---------------------------------D--------------------TPNFVGS 144 (302)
Q Consensus 118 vy~~~~~~~~~~~~~~~e~---------------------------------~--------------------~~~~~~~ 144 (302)
|||....... +.++... . ...+..+
T Consensus 271 VyG~~~G~i~--E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pN 348 (605)
T PLN02503 271 VNGQRQGRIM--EKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQD 348 (605)
T ss_pred eecCCCCeee--eeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCC
Confidence 9997642211 2222200 0 0011127
Q ss_pred chhhhHHHHHHHHHhhcCc---eEEeeecccC----------CCCCCchhhHHHHhcccc-----cccccCCcccHhhHH
Q 022112 145 FYSKTKAMVEELLKNFENV---CTLRVRMPIS----------SDLSNPRNFITKITRYEK-----VVNIPNSMTILDELL 206 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~v~D~a 206 (302)
.|..+|.++|+++...... +|+||++|.+ .+.......+.....|.- -.+...|+|+||.++
T Consensus 349 tYt~TK~lAE~lV~~~~~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vv 428 (605)
T PLN02503 349 TYVFTKAMGEMVINSMRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVV 428 (605)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHH
Confidence 8999999999999766433 9999999943 221000011111111211 012356899999999
Q ss_pred HHHHHHHhc------CCCCeEEecCC--CccCHHHHHHHHHhhcCC
Q 022112 207 PISIEMAKR------NLTGIWNFTNP--GVVSHNEILEMYRQYIDP 244 (302)
Q Consensus 207 ~~~~~~~~~------~~~~~~~~~~~--~~~s~~e~~~~~~~~~g~ 244 (302)
++++.++.. ....+||++++ +++++.|+.+.+.+.+..
T Consensus 429 na~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 429 NATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred HHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 999998432 12469999988 899999999999987653
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=168.44 Aligned_cols=233 Identities=14% Similarity=0.119 Sum_probs=157.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhh----cC-CCEEEEccccCCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAA----VK-PTHVFNAAGVTGR 75 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~----~~-~d~Vi~~a~~~~~ 75 (302)
+||||||||++|++++++|+++|++|++ +.+|+.|++++..+++. .+ +|.|+|+++...
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~- 79 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIP- 79 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCC-
Confidence 4899999999999999999999999887 46788889999888842 25 899999987431
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
+. .....+++++|++.+++ +|++||..++... ..+...|
T Consensus 80 --------~~-------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~-------------------------~~~~~~~ 119 (285)
T TIGR03649 80 --------DL-------APPMIKFIDFARSKGVRRFVLLSASIIEKGG-------------------------PAMGQVH 119 (285)
T ss_pred --------Ch-------hHHHHHHHHHHHHcCCCEEEEeeccccCCCC-------------------------chHHHHH
Confidence 00 12345799999999986 8888875432200 0123345
Q ss_pred HHHHh--hcCceEEeeecccCCCCCCchhhHHHHhccccc----ccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCC
Q 022112 155 ELLKN--FENVCTLRVRMPISSDLSNPRNFITKITRYEKV----VNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNP 226 (302)
Q Consensus 155 ~~~~~--~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~ 226 (302)
+++++ -.+++++||++++.... ...+...+.....+ .+...+|+|++|+|+++..++..+ .++.|+++++
T Consensus 120 ~~l~~~~gi~~tilRp~~f~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~~~~l~g~ 197 (285)
T TIGR03649 120 AHLDSLGGVEYTVLRPTWFMENFS--EEFHVEAIRKENKIYSATGDGKIPFVSADDIARVAYRALTDKVAPNTDYVVLGP 197 (285)
T ss_pred HHHHhccCCCEEEEeccHHhhhhc--ccccccccccCCeEEecCCCCccCcccHHHHHHHHHHHhcCCCcCCCeEEeeCC
Confidence 55544 35679999999886421 11112222222211 234678999999999999998864 3468999999
Q ss_pred CccCHHHHHHHHHhhcCCCCccccccccccceeee-----------------cCC-CCCccCchhHHHhCC-CcchHHHH
Q 022112 227 GVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIV-----------------APR-SNNELDASKLKTEFP-ELLSIKES 287 (302)
Q Consensus 227 ~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~d~~k~~~~lg-~~~~~~e~ 287 (302)
+.+|+.|+++.+.+.+|+++.....+..+...... ..+ ......+..+++.+| ++.++++-
T Consensus 198 ~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~~~~~~ 277 (285)
T TIGR03649 198 ELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAVKNGAEVRLNDVVKAVTGSKPRGFRDF 277 (285)
T ss_pred ccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCccccccchHHHHhCcCCccHHHH
Confidence 99999999999999999987655443322211000 000 001123666777889 77788888
Q ss_pred HHHHH
Q 022112 288 LIKYV 292 (302)
Q Consensus 288 i~~~~ 292 (302)
+ ++.
T Consensus 278 ~-~~~ 281 (285)
T TIGR03649 278 A-ESN 281 (285)
T ss_pred H-HHh
Confidence 8 554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=159.61 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=148.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhh-----cCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAA-----VKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~-----~~~d~Vi 67 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+.+.+ .++|+||
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 81 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV 81 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999998876 47899999888777653 2689999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||....+. ......+....+++|+.++.++++++ ++.+. ++|++||..... +.+
T Consensus 82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------------~~~ 143 (276)
T PRK06482 82 SNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQI------------------AYP 143 (276)
T ss_pred ECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCccccc------------------CCC
Confidence 9999763111 11234456788899999999999997 44443 588888854321 112
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecc---cCCCCCCc----------hhhHHHHhcccccccccCCcc
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMP---ISSDLSNP----------RNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v---~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~i 200 (302)
+.+.|+.+|...|.+++.+.. ..++||+.+ |++..... ...+...+.... ..-+.
T Consensus 144 ~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 219 (276)
T PRK06482 144 GFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADGS----FAIPG 219 (276)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhcc----CCCCC
Confidence 347999999999988866532 177888776 54332110 001111211111 11246
Q ss_pred cHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCC
Q 022112 201 ILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDP 244 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 244 (302)
+++|++++++.++..+ ....||+++++..+..|++..+.+.++.
T Consensus 220 d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 220 DPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred CHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999864 3458999999999999988888877653
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=158.43 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=139.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCC-hhhHHHHH-hhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLEN-RASLEADI-AAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~-~~~~~~~~-~~~~~d~Vi~~a 70 (302)
.+|+||||||||+||+.++++|+++|++|++ +.+|+++ .+.+.+.+ . ++|+|||++
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~--~~d~vi~~~ 93 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGD--DSDAVICAT 93 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhc--CCCEEEECC
Confidence 3579999999999999999999999999876 3456766 34555555 3 799999998
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
+... . .++...+++|..++.++++++++.+++ +|++||..+|+.... .+..+..........|...
T Consensus 94 g~~~---~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~------~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 94 GFRR---S----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG------QILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred CCCc---C----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcc------cccCcchhHHHHHHHHHHH
Confidence 8541 0 112233568888999999999988764 999999999985421 1111111010001234557
Q ss_pred HHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC--CCeEEecCC
Q 022112 150 KAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIWNFTNP 226 (302)
Q Consensus 150 K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~ 226 (302)
|..+|++++.. .+.+++||+++++....+... +. ........+++.+|+|++++.++..+. ..++.+.+.
T Consensus 161 k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~-----~~--~~~~~~~~~i~~~dvA~~~~~~~~~~~~~~~~~~~~~~ 233 (251)
T PLN00141 161 KLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIV-----ME--PEDTLYEGSISRDQVAEVAVEALLCPESSYKVVEIVAR 233 (251)
T ss_pred HHHHHHHHHhcCCcEEEEECCCccCCCCCceEE-----EC--CCCccccCcccHHHHHHHHHHHhcChhhcCcEEEEecC
Confidence 88888877654 567999999999753211100 00 000112357999999999999987643 457777763
Q ss_pred ---CccCHHHHHHHHHh
Q 022112 227 ---GVVSHNEILEMYRQ 240 (302)
Q Consensus 227 ---~~~s~~e~~~~~~~ 240 (302)
...++.+|+..+++
T Consensus 234 ~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 234 ADAPKRSYKDLFASIKQ 250 (251)
T ss_pred CCCCchhHHHHHHHhhc
Confidence 34788888887764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=187.85 Aligned_cols=225 Identities=14% Similarity=0.233 Sum_probs=157.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC----CcEEE----------------------------------eecCCCC-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS----IDFTY----------------------------------GSGRLEN----- 50 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g----~~V~~----------------------------------~~~dl~~----- 50 (302)
.++|||||||||+|+++++.|++++ ++|+. +.+|+++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 4789999999999999999999876 44443 3455543
Q ss_pred -hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCC
Q 022112 51 -RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLG 128 (302)
Q Consensus 51 -~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~ 128 (302)
.+.+..+.. ++|+|||+|+... . ..........|+.++.+++++|++.+++ ++|+||.++|+.....+..
T Consensus 1051 ~~~~~~~l~~--~~d~iiH~Aa~~~---~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1051 SDEKWSDLTN--EVDVIIHNGALVH---W---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CHHHHHHHHh--cCCEEEECCcEec---C---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchh
Confidence 233444444 7999999999762 1 1233445568999999999999988765 9999999999743211100
Q ss_pred ------CCCCCCCCCCC----CCCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCC---chhhHHHHhcccc
Q 022112 129 ------SGIGFKEEDTP----NFVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSN---PRNFITKITRYEK 191 (302)
Q Consensus 129 ------~~~~~~e~~~~----~~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~ 191 (302)
...++.|+... ....+.|+.+|..+|.+++.+. ...++||+.+||+...+ ...++..++.+..
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~ 1202 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCI 1202 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCCCCchhHHHHHHHHHH
Confidence 01123444321 1123679999999999987653 23899999999975432 2345555554331
Q ss_pred ----c--ccccCCcccHhhHHHHHHHHHhcCC----CCeEEecCCCccCHHHHHHHHHhhcCCCCc
Q 022112 192 ----V--VNIPNSMTILDELLPISIEMAKRNL----TGIWNFTNPGVVSHNEILEMYRQYIDPNFT 247 (302)
Q Consensus 192 ----~--~~~~~~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~ 247 (302)
. ....++|++++|++++++.++.++. ..+||++++..+++.++++.+.+. |.+.+
T Consensus 1203 ~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~~ 1267 (1389)
T TIGR03443 1203 QLGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY-GYDVE 1267 (1389)
T ss_pred HhCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh-CCCCC
Confidence 1 2246799999999999999887542 248999998999999999999764 65544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=146.84 Aligned_cols=272 Identities=17% Similarity=0.138 Sum_probs=192.6
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhC-CCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
.+...||||||+-|++|..+++.|..+ |.+.++ +..|+.|...+++++-..++|.+||+.+.
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfSAL 120 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFSAL 120 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhcccCCchhhhhhccccHHHhhcccccceeeeHHHH
Confidence 445669999999999999999999874 555433 77889999999999988899999999887
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
- ....+.+......+|+.|..|+++.|++++.++..-|+...||+.++ ..|-+.-... .|...||.||..
T Consensus 121 L----SAvGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSP-----RNPTPdltIQ-RPRTIYGVSKVH 190 (366)
T KOG2774|consen 121 L----SAVGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSP-----RNPTPDLTIQ-RPRTIYGVSKVH 190 (366)
T ss_pred H----HHhcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCC-----CCCCCCeeee-cCceeechhHHH
Confidence 6 23455677788899999999999999999999888999999997763 1222222223 345899999999
Q ss_pred HHHHHHhhcCc-----eEEeeecccCCCCCCc-------hhhHHHHhccccc----ccccCCcccHhhHHHHHHHHHhcC
Q 022112 153 VEELLKNFENV-----CTLRVRMPISSDLSNP-------RNFITKITRYEKV----VNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 153 ~E~~~~~~~~~-----~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~----~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
+|.+-+.+... ..+|++.++.....++ ..|...+.+|+.. ++....++|.+|+.++++..+..+
T Consensus 191 AEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~~~~~~~~a~ 270 (366)
T KOG2774|consen 191 AELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMASVIQLLAAD 270 (366)
T ss_pred HHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHHHHHHHHhCC
Confidence 99887776443 5667777776543222 1255555555542 234567899999999999988754
Q ss_pred ----CCCeEEecCCCccCHHHHHHHHHhhcC-CCCccccccccccceeeecCCCCCccCchhHHHhCCC--cchHHHHHH
Q 022112 217 ----LTGIWNFTNPGVVSHNEILEMYRQYID-PNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPE--LLSIKESLI 289 (302)
Q Consensus 217 ----~~~~~~~~~~~~~s~~e~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~--~~~~~e~i~ 289 (302)
+..+||+++ -..+-.|++..+.+.+. ..+.+..-........+ -..+|.+.++.++.| ...+..-+
T Consensus 271 ~~~lkrr~ynvt~-~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~w-----p~~~dds~ar~~wh~~h~~~l~~~i- 343 (366)
T KOG2774|consen 271 SQSLKRRTYNVTG-FSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSW-----PMSLDDSEARTEWHEKHSLHLLSII- 343 (366)
T ss_pred HHHhhhheeeece-eccCHHHHHHHHHhhCCCceeecccchhhhhhhhc-----ccccCchhHhhHHHHhhhhhHHHHH-
Confidence 346999997 89999999999999863 23221110111111111 246888889998873 33444444
Q ss_pred HHHhhchhhh
Q 022112 290 KYVFEPNKKT 299 (302)
Q Consensus 290 ~~~~~~~~~~ 299 (302)
..+++..|.|
T Consensus 344 ~~~i~~~~~n 353 (366)
T KOG2774|consen 344 STVVAVHKSN 353 (366)
T ss_pred HHHHHHHHhh
Confidence 5555554443
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=152.16 Aligned_cols=200 Identities=14% Similarity=0.176 Sum_probs=159.0
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
.+-|.|||||+|+.++.+|.+.|.+|++ ...|+.|+++++++++ ...+||++.|.
T Consensus 63 VaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk--~sNVVINLIGr 140 (391)
T KOG2865|consen 63 VATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVK--HSNVVINLIGR 140 (391)
T ss_pred EEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHH--hCcEEEEeecc
Confidence 4778899999999999999999999887 5667889999999999 88999999995
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
. +.. ..-.+.++|+.+++.+++.|++.|+. ||++|+-. .+ ...+ +-|-.+|.
T Consensus 141 d------~eT-knf~f~Dvn~~~aerlAricke~GVerfIhvS~Lg---an----------------v~s~-Sr~LrsK~ 193 (391)
T KOG2865|consen 141 D------YET-KNFSFEDVNVHIAERLARICKEAGVERFIHVSCLG---AN----------------VKSP-SRMLRSKA 193 (391)
T ss_pred c------ccc-CCcccccccchHHHHHHHHHHhhChhheeehhhcc---cc----------------ccCh-HHHHHhhh
Confidence 4 122 22346689999999999999999985 99999843 11 1123 67889999
Q ss_pred HHHHHHH-hhcCceEEeeecccCCCCCCchhhHHHHhcccccc------cccCCcccHhhHHHHHHHHHhcC--CCCeEE
Q 022112 152 MVEELLK-NFENVCTLRVRMPISSDLSNPRNFITKITRYEKVV------NIPNSMTILDELLPISIEMAKRN--LTGIWN 222 (302)
Q Consensus 152 ~~E~~~~-~~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~ 222 (302)
+.|..++ ++++.+|+||+.+||......+.|.....+-..++ .....++||-|+|++++.++..+ .+.+|.
T Consensus 194 ~gE~aVrdafPeAtIirPa~iyG~eDrfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gktye 273 (391)
T KOG2865|consen 194 AGEEAVRDAFPEATIIRPADIYGTEDRFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGKTYE 273 (391)
T ss_pred hhHHHHHhhCCcceeechhhhcccchhHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCceee
Confidence 9999984 57999999999999976544444444444332222 13457899999999999999875 345999
Q ss_pred ecCCCccCHHHHHHHHHhhcCC
Q 022112 223 FTNPGVVSHNEILEMYRQYIDP 244 (302)
Q Consensus 223 ~~~~~~~s~~e~~~~~~~~~g~ 244 (302)
+++++...+.|+++.+-+..-+
T Consensus 274 ~vGP~~yql~eLvd~my~~~~~ 295 (391)
T KOG2865|consen 274 FVGPDRYQLSELVDIMYDMARE 295 (391)
T ss_pred ecCCchhhHHHHHHHHHHHHhh
Confidence 9999999999999998887654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=150.53 Aligned_cols=196 Identities=15% Similarity=0.060 Sum_probs=139.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++|+||||||||+||++|+++|+++|++|++ +.+|+++.+++.+.+++. +
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 84 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999998655 568999999888877643 7
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+|+....+.. ......+...+++|+.++.++++.+. +.+. ++|++||...+.+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~-------------- 150 (249)
T PRK12825 85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW-------------- 150 (249)
T ss_pred CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC--------------
Confidence 8999999996521111 11345667889999999999998873 4444 59999987665421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhc--------CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFE--------NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.+. ...++||++++++..... +......... ......+++.+|++++
T Consensus 151 ----~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~dva~~ 223 (249)
T PRK12825 151 ----PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEAT--IEEAREAKDA-ETPLGRSGTPEDIARA 223 (249)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccc--cchhHHhhhc-cCCCCCCcCHHHHHHH
Confidence 123689999999988775542 228899999998753211 1111111111 1123348899999999
Q ss_pred HHHHHhcC----CCCeEEecCCCcc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+..+++.. .+.+|+++++..+
T Consensus 224 ~~~~~~~~~~~~~g~~~~i~~g~~~ 248 (249)
T PRK12825 224 VAFLCSDASDYITGQVIEVTGGVDV 248 (249)
T ss_pred HHHHhCccccCcCCCEEEeCCCEee
Confidence 99999653 2469999987654
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=158.28 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=104.5
Q ss_pred EEcCCcchHHHHHHHHHhCCC--cEEE-------------------------------------eecCCCCh------hh
Q 022112 19 IYGRTGWIGGLLGKLCQAQSI--DFTY-------------------------------------GSGRLENR------AS 53 (302)
Q Consensus 19 ItGatG~iG~~l~~~L~~~g~--~V~~-------------------------------------~~~dl~~~------~~ 53 (302)
|||||||+|++|+++|++++. +|+. +.+|++++ +.
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999886 5555 66777764 34
Q ss_pred HHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCC
Q 022112 54 LEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 54 ~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
+..+.+ ++|+|||+||..+ . ..+.....+.|+.|+.++++.|.+... +|+|+||+.+.+....... +.+
T Consensus 81 ~~~L~~--~v~~IiH~Aa~v~---~---~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~--~~~ 150 (249)
T PF07993_consen 81 YQELAE--EVDVIIHCAASVN---F---NAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIE--EKV 150 (249)
T ss_dssp HHHHHH--H--EEEE--SS-S---B---S-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT----SSS
T ss_pred hhcccc--ccceeeecchhhh---h---cccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCccc--ccc
Confidence 555555 7999999999772 2 234556788999999999999996543 6999999555554331110 111
Q ss_pred C--CCC--CCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC---chhh----HHHHhcccccc---
Q 022112 133 F--KEE--DTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN---PRNF----ITKITRYEKVV--- 193 (302)
Q Consensus 133 ~--~e~--~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~---~~~~----~~~~~~~~~~~--- 193 (302)
+ .+. +......+.|..||..+|++++.+. ...|+||+.++|....+ ...+ +.........+
T Consensus 151 ~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~ 230 (249)
T PF07993_consen 151 YPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLP 230 (249)
T ss_dssp -HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-S
T ss_pred cccccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCccccc
Confidence 1 111 1122223789999999999997654 23999999999943222 2222 22222212111
Q ss_pred ---cccCCcccHhhHHHHH
Q 022112 194 ---NIPNSMTILDELLPIS 209 (302)
Q Consensus 194 ---~~~~~~i~v~D~a~~~ 209 (302)
....++++||.+|+++
T Consensus 231 ~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 231 GDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp B---TT--EEEHHHHHHHH
T ss_pred CCCCceEeEECHHHHHhhC
Confidence 1247899999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=147.32 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=133.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d 86 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVD 86 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999998875 568999999888777642 589
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHH----HHHHHHHH-HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVG----TLTLADVC-RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~----~~~ll~~~-~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+....... ..........+++|+.+ +..+++++ ++.+. ++|++||...+..
T Consensus 87 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~---------------- 150 (262)
T PRK13394 87 ILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA---------------- 150 (262)
T ss_pred EEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCC----------------
Confidence 99999997521111 12344567788899999 66677777 55544 5888888543221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hh-----------hHHHHhcccccccccC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RN-----------FITKITRYEKVVNIPN 197 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~-----------~~~~~~~~~~~~~~~~ 197 (302)
.+....|+.+|...+.+++.++.. .++||+.++++..... .. +...++.+. ...+
T Consensus 151 --~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 225 (262)
T PRK13394 151 --SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGK---TVDG 225 (262)
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcC---CCCC
Confidence 123378999999998887665322 6788888877532110 00 111111111 1246
Q ss_pred CcccHhhHHHHHHHHHhcCC----CCeEEecCCCc
Q 022112 198 SMTILDELLPISIEMAKRNL----TGIWNFTNPGV 228 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~~----~~~~~~~~~~~ 228 (302)
+|++++|++++++.+++... +..|++.++..
T Consensus 226 ~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g~~ 260 (262)
T PRK13394 226 VFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHGWF 260 (262)
T ss_pred CCCCHHHHHHHHHHHcCccccCCcCCEEeeCCcee
Confidence 89999999999999987532 35788887643
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=144.47 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=126.0
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcch
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~ 80 (302)
|+|+||||++|+.++++|+++|++|++ +.+|+.|++++.+++. ++|+|||+++... .
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~---~-- 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPP---K-- 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTT---T--
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhc---c--
Confidence 799999999999999999999999988 6789999999999999 9999999998652 1
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHh
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
+...+.+++++|++.+++ +|++||..+|+.... .+.....+ ....|...|...|+.++.
T Consensus 74 -----------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~e~~~~~ 133 (183)
T PF13460_consen 74 -----------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG-------LFSDEDKP--IFPEYARDKREAEEALRE 133 (183)
T ss_dssp -----------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTS-------EEEGGTCG--GGHHHHHHHHHHHHHHHH
T ss_pred -----------cccccccccccccccccccceeeeccccCCCCCc-------cccccccc--chhhhHHHHHHHHHHHHh
Confidence 166778999999999985 899999998885431 11111111 115788999999998854
Q ss_pred -hcCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 160 -FENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 160 -~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
-.+++++||+++||+... ...++.. ......++|+.+|+|++++.++++
T Consensus 134 ~~~~~~ivrp~~~~~~~~~-~~~~~~~------~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 134 SGLNWTIVRPGWIYGNPSR-SYRLIKE------GGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp STSEEEEEEESEEEBTTSS-SEEEESS------TSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred cCCCEEEEECcEeEeCCCc-ceeEEec------cCCCCcCcCCHHHHHHHHHHHhCC
Confidence 356699999999998532 2112111 112345899999999999998863
|
... |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-18 Score=144.72 Aligned_cols=195 Identities=14% Similarity=0.086 Sum_probs=133.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.++||||||+|+||++++++|+++|++|++ +.+|+++.+++..+++.. +
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGR 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999998876 356888888888777643 6
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|+|||+|+....+. ......++...+++|+.++.++++++.+. +..++.+++ +.+ ..
T Consensus 86 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~--~~~---------------~~ 148 (249)
T PRK09135 86 LDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD--IHA---------------ER 148 (249)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC--hhh---------------cC
Confidence 899999999642111 11223467889999999999999999653 223444443 222 11
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc-------CceEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE-------NVCTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~-------~~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+ .++...|+.+|..+|.+++.+. ...++||++++++.... +..+......... ...+.+++|+|++
T Consensus 149 ~-~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~a~~ 223 (249)
T PRK09135 149 P-LKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAILARTP----LKRIGTPEDIAEA 223 (249)
T ss_pred C-CCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHHHhcCC----cCCCcCHHHHHHH
Confidence 2 2344799999999999987653 23778999999875321 1122222222211 1223468999999
Q ss_pred HHHHHhc-C--CCCeEEecCCCccC
Q 022112 209 SIEMAKR-N--LTGIWNFTNPGVVS 230 (302)
Q Consensus 209 ~~~~~~~-~--~~~~~~~~~~~~~s 230 (302)
+..++.. + .+.+||+++++.++
T Consensus 224 ~~~~~~~~~~~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 224 VRFLLADASFITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHcCccccccCcEEEECCCeecc
Confidence 9665543 2 34589999987655
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=152.20 Aligned_cols=221 Identities=15% Similarity=0.141 Sum_probs=146.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEE----------------------------------eecCCCC------hhh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTY----------------------------------GSGRLEN------RAS 53 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~----------------------------------~~~dl~~------~~~ 53 (302)
+++|+||||||+|++|+..|+.+-. +|++ +.+|+.. ...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999998754 5554 5667663 344
Q ss_pred HHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCC
Q 022112 54 LEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 54 ~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
+.++.+ .+|.|||+|+... -...+.+....|+.|+..+++.|.....| +.|+||.+|+......-. ..-
T Consensus 81 ~~~La~--~vD~I~H~gA~Vn------~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~--~~~ 150 (382)
T COG3320 81 WQELAE--NVDLIIHNAALVN------HVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNF--TVD 150 (382)
T ss_pred HHHHhh--hcceEEecchhhc------ccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCC--ccc
Confidence 666666 8999999999872 23456778899999999999999998777 999999998765432111 111
Q ss_pred CCCCC----CCCCCCCchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCC---CchhhHHHHhcccc----ccc--c
Q 022112 133 FKEED----TPNFVGSFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLS---NPRNFITKITRYEK----VVN--I 195 (302)
Q Consensus 133 ~~e~~----~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~---~~~~~~~~~~~~~~----~~~--~ 195 (302)
..|.+ ......+.|+.||..+|.+++...+. +|+||+.+-|.... ...+|+.+++.+.. .+. .
T Consensus 151 ~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~~~~ 230 (382)
T COG3320 151 FDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDSEY 230 (382)
T ss_pred cccccccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCCccc
Confidence 11111 12233479999999999999876554 99999999986542 23456666555422 221 1
Q ss_pred cCCcccHhhHHH-----------HHHHHHhcC--CCCeEE-ecCCCccCHHHHHHHHHh--hcCCC
Q 022112 196 PNSMTILDELLP-----------ISIEMAKRN--LTGIWN-FTNPGVVSHNEILEMYRQ--YIDPN 245 (302)
Q Consensus 196 ~~~~i~v~D~a~-----------~~~~~~~~~--~~~~~~-~~~~~~~s~~e~~~~~~~--~~g~~ 245 (302)
..+.+.++++++ ++..+...+ ....|+ ..-+..+.+.++.+++.+ ..+.+
T Consensus 231 ~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~ 296 (382)
T COG3320 231 SLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYP 296 (382)
T ss_pred chhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhhhhccCCc
Confidence 222333333322 333333221 113444 344788999999999988 44443
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=145.07 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=132.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||+.++++|+++|++|++ +.+|+.+.+++..+++.. ++|+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 81 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDI 81 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 57999999999999999999999998776 457899988776665532 5899
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+|+..... .......+....+..|+.++..+++++ ++.+. ++|++||...+.+.
T Consensus 82 vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~----------------- 144 (255)
T TIGR01963 82 LVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS----------------- 144 (255)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC-----------------
Confidence 99999975311 111233455677889999988888777 44454 48888886554321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccc------------cccccCCc
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEK------------VVNIPNSM 199 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 199 (302)
+....|+.+|...+.+++.+.. ...+||++++++.. ...+........ .....+++
T Consensus 145 -~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (255)
T TIGR01963 145 -PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLV---EKQIADQAKTRGIPEEQVIREVMLPGQPTKRF 220 (255)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHH---HHHHHhhhcccCCCchHHHHHHHHccCccccC
Confidence 1236899999998888765432 16678888877521 111111111000 01134679
Q ss_pred ccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 200 TILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++++|+|++++.+++.. .++.|++.++..
T Consensus 221 ~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~~ 253 (255)
T TIGR01963 221 VTVDEVAETALFLASDAAAGITGQAIVLDGGWT 253 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccceEEEEcCccc
Confidence 99999999999999753 245899987643
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-18 Score=146.32 Aligned_cols=211 Identities=11% Similarity=0.011 Sum_probs=144.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
+++||||||+|+||++++++|+++|++|++ +.+|++|.+++.+.++.. .+|+||
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 82 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV 82 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 458999999999999999999999998876 467888988887766642 789999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||....+ ..+....++...+++|+.++..+++++ ++.+. ++|++||...+.+. +
T Consensus 83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~------------------~ 144 (275)
T PRK08263 83 NNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF------------------P 144 (275)
T ss_pred ECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC------------------C
Confidence 999976311 112244577889999999998888776 44443 58899887655422 1
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc---h---hhHHHHhcccccccccCCc-ccHhhHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP---R---NFITKITRYEKVVNIPNSM-TILDELL 206 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~---~---~~~~~~~~~~~~~~~~~~~-i~v~D~a 206 (302)
....|+.+|...+.+.+.+.. ..++||+.+..+..... . .....+............+ +..+|++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva 224 (275)
T PRK08263 145 MSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQWSERSVDGDPEAAA 224 (275)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHHHHhccCCCCHHHHH
Confidence 236899999999888766532 26677776654322100 0 0011111100000123345 7899999
Q ss_pred HHHHHHHhcCC-CCeEEec-CCCccCHHHHHHHHHhhc
Q 022112 207 PISIEMAKRNL-TGIWNFT-NPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 207 ~~~~~~~~~~~-~~~~~~~-~~~~~s~~e~~~~~~~~~ 242 (302)
++++.+++.+. .+.|.++ +++.+++.++.+.+.+..
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 225 EALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATWE 262 (275)
T ss_pred HHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHHH
Confidence 99999998753 4445444 447899999999998863
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-18 Score=144.96 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=143.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++++++.+.+++. +
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGR 86 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999886 235888888887777643 7
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|+|||+|+.... +.......+....+.+|+.++.++++++.+. + .++|++||...+...
T Consensus 87 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------- 153 (276)
T PRK05875 87 LHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH------------- 153 (276)
T ss_pred CCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC-------------
Confidence 8999999985421 1112233456788899999999998877543 2 368999887654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
++...|+.+|...|.+++.+... ..+||+.+..+.... ...+...+.... ....+.+++|
T Consensus 154 -----~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d 224 (276)
T PRK05875 154 -----RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACT----PLPRVGEVED 224 (276)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCC----CCCCCcCHHH
Confidence 23478999999999998765422 556776665432110 001111111111 1234678999
Q ss_pred HHHHHHHHHhcCC----CCeEEecCCCcc----CHHHHHHHHHhhcC
Q 022112 205 LLPISIEMAKRNL----TGIWNFTNPGVV----SHNEILEMYRQYID 243 (302)
Q Consensus 205 ~a~~~~~~~~~~~----~~~~~~~~~~~~----s~~e~~~~~~~~~g 243 (302)
+++++..+++.+. +.+|++.++..+ +..|+++.+....|
T Consensus 225 va~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 225 VANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred HHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 9999999998642 458999998776 77777777765543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-18 Score=142.12 Aligned_cols=194 Identities=13% Similarity=0.069 Sum_probs=136.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++|+||||||+|++|.+++++|+++|++|++ +.+|+.|.+++.+.+++. ++
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 84 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL 84 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999998876 457888988888877643 68
Q ss_pred CEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+++....... .....++...+..|+.++.++++++. +.+. ++|++||...++.
T Consensus 85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~---------------- 148 (251)
T PRK12826 85 DILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRV---------------- 148 (251)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhcc----------------
Confidence 999999987631100 23345667889999999999998874 3333 5899988765410
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc-hh-hHHHHhcccccccccCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP-RN-FITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+.+....|+.+|..++.+++.+.. ..++||+.++++..... .. +...+....+ ...+++++|+|.
T Consensus 149 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dva~ 223 (251)
T PRK12826 149 -GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP----LGRLGEPEDIAA 223 (251)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHHHhcCC----CCCCcCHHHHHH
Confidence 112336899999999988766422 27789999988743111 11 1222211111 135789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
++..++... .+++|++.++.
T Consensus 224 ~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 224 AVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred HHHHHhCccccCcCCcEEEECCCc
Confidence 999988653 34688988754
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-18 Score=142.05 Aligned_cols=192 Identities=13% Similarity=0.148 Sum_probs=135.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++.+++..+++.. ++|
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 85 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGID 85 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 368999999999999999999999998876 467888888877666543 689
Q ss_pred EEEEccccCCC----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR----PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 65 ~Vi~~a~~~~~----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|||+|+.... +.......++...+++|+.++.++++++.+. +.++|++||...|.
T Consensus 86 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------------- 150 (250)
T PRK07774 86 YLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL--------------- 150 (250)
T ss_pred EEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC---------------
Confidence 99999997521 0112234566778999999999999998764 23699999976654
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+.+.|+.+|...|.+++.+... ..++|+.+..+... .+..+...+....+ ..-+.+++|+
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~ 220 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIP----LSRMGTPEDL 220 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHHHhcCC----CCCCcCHHHH
Confidence 1268999999999988775432 55667666544321 12223333333222 1224678999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+++++.++... .+++|++.++..++
T Consensus 221 a~~~~~~~~~~~~~~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 221 VGMCLFLLSDEASWITGQIFNVDGGQIIR 249 (250)
T ss_pred HHHHHHHhChhhhCcCCCEEEECCCeecc
Confidence 99999988753 34589999876543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-18 Score=143.28 Aligned_cols=205 Identities=13% Similarity=0.033 Sum_probs=143.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+.|.+++...+.+. ++|+|
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 81 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL 81 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 458999999999999999999999988766 478888888887777643 58999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+++...... ...........+.+|+.++.++++++.. .+. ++|++||...+...
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------ 143 (257)
T PRK07074 82 VANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAAL------------------ 143 (257)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCCC------------------
Confidence 99999653111 1112234456678999999888888843 233 48888885332200
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC----chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN----PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
....|+.+|...+.+++.++.. ..+||++++++.... ...+...+.. .....++++++|++++
T Consensus 144 -~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~~ 218 (257)
T PRK07074 144 -GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKK----WYPLQDFATPDDVANA 218 (257)
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHh----cCCCCCCCCHHHHHHH
Confidence 1247999999999888776432 667887776653211 1122222211 1124678999999999
Q ss_pred HHHHHhcC----CCCeEEecCCCccCHHHHHHHHHhh
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVVSHNEILEMYRQY 241 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~s~~e~~~~~~~~ 241 (302)
++.++... .+..+++.++...+.+|+++.+.+.
T Consensus 219 ~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 255 (257)
T PRK07074 219 VLFLASPAARAITGVCLPVDGGLTAGNREMARTLTLE 255 (257)
T ss_pred HHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhccc
Confidence 99999652 2347788888999999999887653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=144.14 Aligned_cols=194 Identities=14% Similarity=0.048 Sum_probs=132.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. ++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 88 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI 88 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4568999999999999999999999998765 357999999888777643 68
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+..... .......++...+.+|+.++.++++++.+ . ..++|++||...|...
T Consensus 89 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~--------------- 153 (274)
T PRK07775 89 EVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR--------------- 153 (274)
T ss_pred CEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC---------------
Confidence 9999999975311 11123345667789999999999888753 2 2359999997665522
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCC-CCCchhhHHHHhcccc--cccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSD-LSNPRNFITKITRYEK--VVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~-~~~~~~~~~~~~~~~~--~~~~~~~~i~v~D~a 206 (302)
+....|+.+|...|.+++.+.. ..++||+.+..+. .......+..+..... .....+.++|++|+|
T Consensus 154 ---~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 230 (274)
T PRK07775 154 ---PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWGQARHDYFLRASDLA 230 (274)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhcccccccccCHHHHH
Confidence 2236899999999998876542 1667776654321 1011111111111000 011245689999999
Q ss_pred HHHHHHHhcCCC-CeEEec
Q 022112 207 PISIEMAKRNLT-GIWNFT 224 (302)
Q Consensus 207 ~~~~~~~~~~~~-~~~~~~ 224 (302)
++++.+++++.+ .+||+.
T Consensus 231 ~a~~~~~~~~~~~~~~~~~ 249 (274)
T PRK07775 231 RAITFVAETPRGAHVVNME 249 (274)
T ss_pred HHHHHHhcCCCCCCeeEEe
Confidence 999999987644 367775
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=142.31 Aligned_cols=197 Identities=19% Similarity=0.157 Sum_probs=138.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~ 68 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++..++... ++|++||
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~ 86 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFN 86 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57999999999999999999999999875 578899998888777643 6899999
Q ss_pred ccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGC-IFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 69 ~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|+.... +.......++...+++|+.++.++++++... +.++|++||.. .++ .
T Consensus 87 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------------------~ 147 (257)
T PRK07067 87 NAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG-------------------E 147 (257)
T ss_pred CCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC-------------------C
Confidence 9996521 1122344577888999999999999998643 24689998853 222 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcC----c----eEEeeecccCCCCCCchhhHHHHhc---ccc---c--ccccCCcccHhh
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN----V----CTLRVRMPISSDLSNPRNFITKITR---YEK---V--VNIPNSMTILDE 204 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~----~----~~lR~~~v~g~~~~~~~~~~~~~~~---~~~---~--~~~~~~~i~v~D 204 (302)
++...|+.+|...+.+++.+.. . ..++|++++++.......++..... +.. . ....+.+.+.+|
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 227 (257)
T PRK07067 148 ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFARYENRPPGEKKRLVGEAVPLGRMGVPDD 227 (257)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhhccCCCHHHHHHHHhhcCCCCCccCHHH
Confidence 2347899999999988766532 1 6688888877532111111111000 000 0 012456889999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|+++..++... .+.+|++.+++.+|
T Consensus 228 va~~~~~l~s~~~~~~~g~~~~v~gg~~~~ 257 (257)
T PRK07067 228 LTGMALFLASADADYIVAQTYNVDGGNWMS 257 (257)
T ss_pred HHHHHHHHhCcccccccCcEEeecCCEeCC
Confidence 999999988753 24699999886654
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=138.52 Aligned_cols=192 Identities=14% Similarity=0.057 Sum_probs=129.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~ 71 (302)
+||++|||||+|+||+++++.|+++ ++|++ +.+|++|.+++.+++... ++|+|||+++
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 3568999999999999999999999 88877 468899998888888754 6999999999
Q ss_pred cCCCCC-cchhhhhHHHHHHHhHHH----HHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 72 VTGRPN-VDWCESHKVETIRTNVVG----TLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
...... ......+....+..|+.+ +.++++++++.+.++|++||...++.. +....|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~------------------~~~~~y 142 (227)
T PRK08219 81 VADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLRAN------------------PGWGSY 142 (227)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcCcC------------------CCCchH
Confidence 752110 111233456678888888 455555566666679999987665422 123689
Q ss_pred hhhHHHHHHHHHhhcCc-eE-EeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC-CeEEe
Q 022112 147 SKTKAMVEELLKNFENV-CT-LRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT-GIWNF 223 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~-~~-lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~ 223 (302)
+.+|...+.+++.+... .. +|+..++.+.... .+...+............+++++|++++++.+++++.. .++++
T Consensus 143 ~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~--~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~ 220 (227)
T PRK08219 143 AASKFALRALADALREEEPGNVRVTSVHPGRTDT--DMQRGLVAQEGGEYDPERYLRPETVAKAVRFAVDAPPDAHITEV 220 (227)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEecCCccc--hHhhhhhhhhccccCCCCCCCHHHHHHHHHHHHcCCCCCccceE
Confidence 99999999887665322 22 6777666432211 12222221111111245689999999999999987654 36666
Q ss_pred cC
Q 022112 224 TN 225 (302)
Q Consensus 224 ~~ 225 (302)
.-
T Consensus 221 ~~ 222 (227)
T PRK08219 221 VV 222 (227)
T ss_pred EE
Confidence 43
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-18 Score=142.02 Aligned_cols=193 Identities=13% Similarity=0.077 Sum_probs=129.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++... .+|
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d 83 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVD 83 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999998765 677899999887777643 689
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHH----HHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLA----DVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll----~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+....... ..........+++|+.++.+++ .++++.+. ++|++||...+.+.
T Consensus 84 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~---------------- 147 (258)
T PRK12429 84 ILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS---------------- 147 (258)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC----------------
Confidence 99999996531111 1223455667889999855554 44444454 48888886544321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcc--cc----------cccccCC
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRY--EK----------VVNIPNS 198 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~--~~----------~~~~~~~ 198 (302)
+....|+.+|...+.+.+.+.. ...+||++++++... ..+...... .. .....+.
T Consensus 148 --~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (258)
T PRK12429 148 --AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVR---KQIPDLAKERGISEEEVLEDVLLPLVPQKR 222 (258)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhh---hhhhhhccccCCChHHHHHHHHhccCCccc
Confidence 1337899999998877765422 166788888775321 111111100 00 0112467
Q ss_pred cccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 199 MTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++++|+|+++..++... .+..|++.++.
T Consensus 223 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 223 FTTVEEIADYALFLASFAAKGVTGQAWVVDGGW 255 (258)
T ss_pred cCCHHHHHHHHHHHcCccccCccCCeEEeCCCE
Confidence 999999999999988753 24578888763
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=142.45 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=132.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++||||||+|+||++++++|+++|++|++ +.+|+++.+++...+++. ++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGVA 85 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999998765 347888888777666542 78
Q ss_pred CEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|+|||+||....+.. ..........+++|+.+..++++++.+. +.++|++||...|...
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------- 148 (252)
T PRK06077 86 DILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPA----------------- 148 (252)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCC-----------------
Confidence 999999997521111 1122334678899999999999888754 3369999987665422
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHHHHhc-ccccccccCCcccHhhHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFITKITR-YEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~-~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
++...|+.+|...|.+++.+... .+++|+++..+.......+...... ..........+++++|+|++++.
T Consensus 149 -~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 227 (252)
T PRK06077 149 -YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEKFTLMGKILDPEEVAEFVAA 227 (252)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHhcCcCCCCCCHHHHHHHHHH
Confidence 23479999999999988775432 4455555544311000000000000 00011224578999999999999
Q ss_pred HHhcC--CCCeEEecCCCc
Q 022112 212 MAKRN--LTGIWNFTNPGV 228 (302)
Q Consensus 212 ~~~~~--~~~~~~~~~~~~ 228 (302)
+++.+ .+++|++.++..
T Consensus 228 ~~~~~~~~g~~~~i~~g~~ 246 (252)
T PRK06077 228 ILKIESITGQVFVLDSGES 246 (252)
T ss_pred HhCccccCCCeEEecCCee
Confidence 99754 356999998754
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-18 Score=148.03 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=153.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcE---E---------------------------------------EeecCCCCh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDF---T---------------------------------------YGSGRLENR 51 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V---~---------------------------------------~~~~dl~~~ 51 (302)
.++|||||||||+|..|++.|+..--+| . .+.||++++
T Consensus 12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~~ 91 (467)
T KOG1221|consen 12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISEP 91 (467)
T ss_pred CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccCc
Confidence 4689999999999999999999764221 1 167776643
Q ss_pred ------hhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-Ce-EEEEcCCccccCCC
Q 022112 52 ------ASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LI-LINYATGCIFEYDS 123 (302)
Q Consensus 52 ------~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~-~v~~SS~~vy~~~~ 123 (302)
.+++...+ ++|+|||+||.+. ..+.......+|..|+.++++.|++.. .+ +||.||..+... .
T Consensus 92 ~LGis~~D~~~l~~--eV~ivih~AAtvr------Fde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~-~ 162 (467)
T KOG1221|consen 92 DLGISESDLRTLAD--EVNIVIHSAATVR------FDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCN-V 162 (467)
T ss_pred ccCCChHHHHHHHh--cCCEEEEeeeeec------cchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecc-c
Confidence 33444445 8999999999772 334556788899999999999999973 45 999999876521 1
Q ss_pred CCCCCCCCCCCCCCC--------------------------CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCC
Q 022112 124 GHPLGSGIGFKEEDT--------------------------PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISS 174 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~--------------------------~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~ 174 (302)
.... +.+|.+... ...| +.|..+|+++|.++.+..+. .|+||+++...
T Consensus 163 ~~i~--E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~P-NTYtfTKal~E~~i~~~~~~lPivIiRPsiI~st 239 (467)
T KOG1221|consen 163 GHIE--EKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWP-NTYTFTKALAEMVIQKEAENLPLVIIRPSIITST 239 (467)
T ss_pred cccc--ccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCC-CceeehHhhHHHHHHhhccCCCeEEEcCCceecc
Confidence 1111 222222221 1123 78999999999999777554 99999999886
Q ss_pred CCCCchhhHHHHhcccc---------c-------ccccCCcccHhhHHHHHHHHHhc-----CC--CCeEEecCC--Ccc
Q 022112 175 DLSNPRNFITKITRYEK---------V-------VNIPNSMTILDELLPISIEMAKR-----NL--TGIWNFTNP--GVV 229 (302)
Q Consensus 175 ~~~~~~~~~~~~~~~~~---------~-------~~~~~~~i~v~D~a~~~~~~~~~-----~~--~~~~~~~~~--~~~ 229 (302)
-....+.|+..+. |.. + .+...|++.+|.++.+++++.-+ +. ..+||++++ .++
T Consensus 240 ~~EP~pGWidn~~-gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~ 318 (467)
T KOG1221|consen 240 YKEPFPGWIDNLN-GPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPV 318 (467)
T ss_pred ccCCCCCccccCC-CCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcc
Confidence 5444555655554 221 0 12356899999999999986632 11 349999987 469
Q ss_pred CHHHHHHHHHhhcC
Q 022112 230 SHNEILEMYRQYID 243 (302)
Q Consensus 230 s~~e~~~~~~~~~g 243 (302)
+|.++.+...+..-
T Consensus 319 t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 319 TWGDFIELALRYFE 332 (467)
T ss_pred cHHHHHHHHHHhcc
Confidence 99999999998865
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=143.97 Aligned_cols=195 Identities=10% Similarity=-0.020 Sum_probs=133.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++++++..++++. ++
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 85 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGGL 85 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 368999999999999999999999999876 246888888877766542 68
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+|||+|+... ....++...+++|+.++.++++++.+. +.++|++||....... .....
T Consensus 86 d~vi~~ag~~~-----~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~-------------~~~~~ 147 (248)
T PRK07806 86 DALVLNASGGM-----ESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIP-------------TVKTM 147 (248)
T ss_pred cEEEECCCCCC-----CCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCc-------------cccCC
Confidence 99999998541 112345677889999999999999864 3479999885432100 00111
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc--cc----cccCCcccHhhHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK--VV----NIPNSMTILDELLPISIE 211 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~~----~~~~~~i~v~D~a~~~~~ 211 (302)
+....|+.+|...|.+++.+... ..+|+..+.++... ..+...+..... .. .....+++++|++++++.
T Consensus 148 ~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ 225 (248)
T PRK07806 148 PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIE--GTVTATLLNRLNPGAIEARREAAGKLYTVSEFAAEVAR 225 (248)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCcccc--CchhhhhhccCCHHHHHHHHhhhcccCCHHHHHHHHHH
Confidence 22368999999999998776432 45677666543221 112222221110 00 012468999999999999
Q ss_pred HHhcC--CCCeEEecCCCc
Q 022112 212 MAKRN--LTGIWNFTNPGV 228 (302)
Q Consensus 212 ~~~~~--~~~~~~~~~~~~ 228 (302)
+++.. .+.+|++++++.
T Consensus 226 l~~~~~~~g~~~~i~~~~~ 244 (248)
T PRK07806 226 AVTAPVPSGHIEYVGGADY 244 (248)
T ss_pred HhhccccCccEEEecCccc
Confidence 99864 345899998754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=140.69 Aligned_cols=197 Identities=10% Similarity=0.019 Sum_probs=131.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+.++.. ++|+||
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv 83 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV 83 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999999998776 467899988887776643 689999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+....+. ......+....+++|+.++.++++++.. .+ .++|++||...+.+. +
T Consensus 84 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~------------------~ 145 (277)
T PRK06180 84 NNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM------------------P 145 (277)
T ss_pred ECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC------------------C
Confidence 9999753111 1122345667799999999999998543 33 369999986544311 2
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--------chhhHHHHhcc--cccccccCCcccHh
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--------PRNFITKITRY--EKVVNIPNSMTILD 203 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--------~~~~~~~~~~~--~~~~~~~~~~i~v~ 203 (302)
+...|+.+|...|.+++.+.. ..++||+++..+.... ...+....... .........+..++
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (277)
T PRK06180 146 GIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREAKSGKQPGDPA 225 (277)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHhhccCCCCCHH
Confidence 347899999999988766532 2778888876532110 01111100000 00011233466899
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCc
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGV 228 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
|+|++++.+++.+.....++.+++.
T Consensus 226 dva~~~~~~l~~~~~~~~~~~g~~~ 250 (277)
T PRK06180 226 KAAQAILAAVESDEPPLHLLLGSDA 250 (277)
T ss_pred HHHHHHHHHHcCCCCCeeEeccHHH
Confidence 9999999999876554444444343
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=139.15 Aligned_cols=195 Identities=13% Similarity=0.054 Sum_probs=134.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. .+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999988766 467888888877766543 78
Q ss_pred CEEEEccccCCCC---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----C-----C-eEEEEcCCccccCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP---NVDWCESHKVETIRTNVVGTLTLADVCRDK-----G-----L-ILINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 64 d~Vi~~a~~~~~~---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~-----~-~~v~~SS~~vy~~~~~~~~~~ 129 (302)
|+|||+|+..... ........+...+++|+.++.++++++.+. + . ++|++||...+.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 154 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------- 154 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-------
Confidence 9999999865210 011233567788999999999999888543 1 2 38999886654321
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcc
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i 200 (302)
+....|+.+|...|.+++.+.. ...+||+.+.++.... ...+...+..+. .....+.
T Consensus 155 -----------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~---~~~~~~~ 220 (256)
T PRK12745 155 -----------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYDALIAKGL---VPMPRWG 220 (256)
T ss_pred -----------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHHhhhhhcC---CCcCCCc
Confidence 1237899999999998876642 2778888887653211 112222111111 1134577
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+.+|+++++..++... .+..|++.++...
T Consensus 221 ~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~~~ 253 (256)
T PRK12745 221 EPEDVARAVAALASGDLPYSTGQAIHVDGGLSI 253 (256)
T ss_pred CHHHHHHHHHHHhCCcccccCCCEEEECCCeec
Confidence 9999999999888643 2458999887543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=138.73 Aligned_cols=192 Identities=12% Similarity=0.031 Sum_probs=134.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. .+
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 85 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGKV 85 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 458999999999999999999999988864 467888888888777652 58
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+....+. .......+...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 150 (247)
T PRK12935 86 DILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG--------------- 150 (247)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC---------------
Confidence 99999999753111 11233677889999999999999998642 3368999885432211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
++...|+.+|...+.+++.+... .+++|+.+..+.... +......+... ...+.+.+++|++++
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~----~~~~~~~~~edva~~ 223 (247)
T PRK12935 151 ---FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAK----IPKKRFGQADEIAKG 223 (247)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHh----CCCCCCcCHHHHHHH
Confidence 23478999999988887654321 567777765432111 11111111111 134678999999999
Q ss_pred HHHHHhcC---CCCeEEecCCC
Q 022112 209 SIEMAKRN---LTGIWNFTNPG 227 (302)
Q Consensus 209 ~~~~~~~~---~~~~~~~~~~~ 227 (302)
++.+++.. .++.||+.++.
T Consensus 224 ~~~~~~~~~~~~g~~~~i~~g~ 245 (247)
T PRK12935 224 VVYLCRDGAYITGQQLNINGGL 245 (247)
T ss_pred HHHHcCcccCccCCEEEeCCCc
Confidence 99988754 34689998863
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=138.85 Aligned_cols=192 Identities=11% Similarity=0.035 Sum_probs=132.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-------
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV------- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~------- 61 (302)
.++++||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~ 85 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQIR 85 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhccc
Confidence 368999999999999999999999998754 457899998888777642
Q ss_pred ----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|+|||+||...... .+.........+++|+.++.++++++.+. ..++|++||..++.+.
T Consensus 86 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~----------- 154 (254)
T PRK12746 86 VGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF----------- 154 (254)
T ss_pred cCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC-----------
Confidence 5899999999753111 11123345677889999999999998763 2369999987765421
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+.+.+.. ...++|+++..+-... ....+....... .....+++++
T Consensus 155 -------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 224 (254)
T PRK12746 155 -------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFATNS---SVFGRIGQVE 224 (254)
T ss_pred -------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHHHhc---CCcCCCCCHH
Confidence 2336899999999988765432 1667787776642110 001111111111 1234577899
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
|+++++..++... .+++|++.++
T Consensus 225 dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 225 DIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred HHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 9999998888653 2458999875
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-17 Score=137.47 Aligned_cols=194 Identities=14% Similarity=0.025 Sum_probs=133.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+|+||||||+|++|.+++++|+++|++|++ +.+|+.|++++.+++++. .+|
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALD 84 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 368999999999999999999999999876 237898888887777642 679
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+++...... ......+....++.|+.+..++++++. +.+. ++|++||.....+.
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~---------------- 148 (246)
T PRK05653 85 ILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGN---------------- 148 (246)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCC----------------
Confidence 9999998753111 112334567788999999999998885 3343 58888875432211
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
++...|+.+|...+.+++.+.+ ..++||+.++++.......+....... ......+++.+|+++++.
T Consensus 149 --~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dva~~~~ 223 (246)
T PRK05653 149 --PGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILK---EIPLGRLGQPEEVANAVA 223 (246)
T ss_pred --CCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHHHHHh---cCCCCCCcCHHHHHHHHH
Confidence 1236899999998887766432 277888888876432111121111111 111356788999999999
Q ss_pred HHHhcC----CCCeEEecCCCc
Q 022112 211 EMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~~~ 228 (302)
.++... .+..|++.++..
T Consensus 224 ~~~~~~~~~~~g~~~~~~gg~~ 245 (246)
T PRK05653 224 FLASDAASYITGQVIPVNGGMY 245 (246)
T ss_pred HHcCchhcCccCCEEEeCCCee
Confidence 988652 235888888753
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=141.43 Aligned_cols=194 Identities=17% Similarity=0.108 Sum_probs=138.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. +
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 134 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELGG 134 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999999998864 457899988887777643 7
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|+|||+|+.... +..+....++...+++|+.++.++++++... +.++|++||...|...
T Consensus 135 iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 199 (300)
T PRK06128 135 LDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS--------------- 199 (300)
T ss_pred CCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC---------------
Confidence 9999999996421 1112245678899999999999999999753 4479999998776532
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... ....+..+.... ....+.+.+|+|
T Consensus 200 ---~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~----p~~r~~~p~dva 272 (300)
T PRK06128 200 ---PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSET----PMKRPGQPVEMA 272 (300)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCC----CCCCCcCHHHHH
Confidence 12367999999999998776432 667888877653211 111222221111 123466889999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCcc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
.+++.++... .+.+|++.++..+
T Consensus 273 ~~~~~l~s~~~~~~~G~~~~v~gg~~~ 299 (300)
T PRK06128 273 PLYVLLASQESSYVTGEVFGVTGGLLL 299 (300)
T ss_pred HHHHHHhCccccCccCcEEeeCCCEeC
Confidence 9999988653 2358899887654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=139.21 Aligned_cols=197 Identities=12% Similarity=0.066 Sum_probs=133.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhh-----cC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAA-----VK 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~-----~~ 62 (302)
++++|||||+|++|+++++.|+++|++|++ +.+|++|++++.. +++ .+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCC
Confidence 357999999999999999999999998876 3578888888776 543 26
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCcc-ccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCI-FEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~v-y~~~~~~~~~~~~~~~e 135 (302)
+|+|||+|+....+.. .....++...+++|+.++.++++++ ++.+. ++|++||... ++.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~-------------- 147 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF-------------- 147 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC--------------
Confidence 8999999997531111 1233566778899999998888885 44443 5888888543 331
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCch--------------hhHHHHhcccccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPR--------------NFITKITRYEKVV 193 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~--------------~~~~~~~~~~~~~ 193 (302)
++...|+.+|...+.+++++.. ..++||+.+..+-..... .++..+... ..
T Consensus 148 -----~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 220 (280)
T PRK06914 148 -----PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH--IN 220 (280)
T ss_pred -----CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH--Hh
Confidence 1337899999999998876531 277888777665211100 011111100 00
Q ss_pred cccCCcccHhhHHHHHHHHHhcCCC-CeEEecCCCccCHH
Q 022112 194 NIPNSMTILDELLPISIEMAKRNLT-GIWNFTNPGVVSHN 232 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~~~~~s~~ 232 (302)
.....+.+++|+|++++.+++++.. ..|+++++..+++.
T Consensus 221 ~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (280)
T PRK06914 221 SGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL 260 (280)
T ss_pred hhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence 1134578999999999999987644 47888876666555
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-17 Score=140.72 Aligned_cols=195 Identities=14% Similarity=0.049 Sum_probs=130.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id 85 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVH 85 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999998774 567899998888877643 689
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-------CeEEEEcCCccccCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKG-------LILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-------~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
+|||+||....+. ......++...+++|+.++.++++++ .+.+ .++|++||...+.+.
T Consensus 86 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 155 (287)
T PRK06194 86 LLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP---------- 155 (287)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----------
Confidence 9999999863111 12344567788999999999977764 3322 258888887655421
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhccccc-----ccccCCcccH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKV-----VNIPNSMTIL 202 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v 202 (302)
+....|+.+|...+.+++.+... ..+|+..++.. .....+.....+.+. ..+.++|+++
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg---~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPY---FVPTGIWQSERNRPADLANTAPPTRSQLIA 224 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeC---cccCccccccccCchhcccCccccchhhHH
Confidence 13368999999999998765432 45665554321 111122222222111 1245677788
Q ss_pred hhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcC
Q 022112 203 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243 (302)
Q Consensus 203 ~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g 243 (302)
+|.+..+.... .++..|+++.+.+.+.
T Consensus 225 ~~~~~~~~~~~--------------~~s~~dva~~i~~~~~ 251 (287)
T PRK06194 225 QAMSQKAVGSG--------------KVTAEEVAQLVFDAIR 251 (287)
T ss_pred HHHHHhhhhcc--------------CCCHHHHHHHHHHHHH
Confidence 87776653211 1678888888877664
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=133.66 Aligned_cols=191 Identities=15% Similarity=0.088 Sum_probs=132.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------eecCCCChhhHHHHHhh----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------GSGRLENRASLEADIAA---- 60 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------~~~dl~~~~~~~~~~~~---- 60 (302)
++|++|||||+|+||+++++.|+++|++|++ +.+|+.+.+++...++.
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999998865 46788888888777653
Q ss_pred -cCCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH-----HhCC-eEEEEcCCccccCCCCCCCCCCCC
Q 022112 61 -VKPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCR-----DKGL-ILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 61 -~~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~-----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
.++|.|||+|+.... +.......++...+.+|+.++.++++++. +.+. ++|++||...+.+.
T Consensus 85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 154 (249)
T PRK12827 85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN---------- 154 (249)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC----------
Confidence 368999999997631 11223345667889999999999999998 3333 58888887654321
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhh
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+++.+.. ...+||+++.++..... .....+....+ ...+.+.+|
T Consensus 155 --------~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~-~~~~~~~~~~~----~~~~~~~~~ 221 (249)
T PRK12827 155 --------RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNA-APTEHLLNPVP----VQRLGEPDE 221 (249)
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccccc-chHHHHHhhCC----CcCCcCHHH
Confidence 1236899999998887765432 27789999887643111 11122222111 123457899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
+|++++.++... .+..+++.++
T Consensus 222 va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 222 VAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred HHHHHHHHcCcccCCccCcEEEeCCC
Confidence 999999888642 2346777654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=133.93 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=132.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++|++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. +
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP 87 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999999988765 457888888887777642 5
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+|+.... +.......++...+++|+.++.++++++.+. ..++|+++|...+..
T Consensus 88 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~--------------- 152 (258)
T PRK09134 88 ITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNL--------------- 152 (258)
T ss_pred CCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCC---------------
Confidence 8999999996521 1112234567889999999999999988763 124666766543331
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.|....|+.+|...|.+.+.+... ..++|+.+..........+.. ..... ......+++|+|+++
T Consensus 153 ---~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~~~~~~~-~~~~~----~~~~~~~~~d~a~~~ 224 (258)
T PRK09134 153 ---NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQSPEDFAR-QHAAT----PLGRGSTPEEIAAAV 224 (258)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccChHHHHH-HHhcC----CCCCCcCHHHHHHHH
Confidence 123358999999999888775432 445666554322111112221 11111 122356799999999
Q ss_pred HHHHhcC-C-CCeEEecCCCccCHH
Q 022112 210 IEMAKRN-L-TGIWNFTNPGVVSHN 232 (302)
Q Consensus 210 ~~~~~~~-~-~~~~~~~~~~~~s~~ 232 (302)
+.+++++ . +..|++.++..+++.
T Consensus 225 ~~~~~~~~~~g~~~~i~gg~~~~~~ 249 (258)
T PRK09134 225 RYLLDAPSVTGQMIAVDGGQHLAWL 249 (258)
T ss_pred HHHhcCCCcCCCEEEECCCeecccc
Confidence 9999864 2 348888887665554
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-17 Score=135.86 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=127.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. ++|+
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 87 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRIDV 87 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCCeE
Confidence 468999999999999999999999998876 456888888777666542 6899
Q ss_pred EEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+||+|+... .+.......+....+++|+.++..+++.+ ++.+ .++|++||...++.
T Consensus 88 lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~----------------- 150 (260)
T PRK12823 88 LINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRGI----------------- 150 (260)
T ss_pred EEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccCC-----------------
Confidence 999998431 11122334566777889998877555544 3444 36999999765531
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC----------chh----hHHHHhccccccccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN----------PRN----FITKITRYEKVVNIP 196 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~----------~~~----~~~~~~~~~~~~~~~ 196 (302)
...+|+.+|...+.+++.++.. ..++|++++++.... ... +...+....+ .
T Consensus 151 ---~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 223 (260)
T PRK12823 151 ---NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSL----M 223 (260)
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCC----c
Confidence 1257999999999988765321 668888887752100 001 1111111111 1
Q ss_pred CCcccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 197 NSMTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.-+.+.+|+|++++.++... .+.++++.+++
T Consensus 224 ~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 224 KRYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred ccCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 22457899999999988643 23488887754
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-17 Score=135.54 Aligned_cols=193 Identities=13% Similarity=0.054 Sum_probs=131.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|++++..++++. ++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGRL 83 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999998764 458999999888877754 68
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----GL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+.... +..+.........+++|+.++.++++++.+. +. ++|++||...+..
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~---------------- 147 (250)
T PRK08063 84 DVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRY---------------- 147 (250)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccC----------------
Confidence 999999986521 1111223345567889999999998888653 33 5888888644321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
.++...|+.+|...|.+++++... ..++|+++..+.... ...+....... .....+++.+|+|
T Consensus 148 --~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dva 221 (250)
T PRK08063 148 --LENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAK----TPAGRMVEPEDVA 221 (250)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcC----CCCCCCcCHHHHH
Confidence 123368999999999998765322 556777665432110 01111111111 1123578999999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++++.+++.+ .+..+++.++..
T Consensus 222 ~~~~~~~~~~~~~~~g~~~~~~gg~~ 247 (250)
T PRK08063 222 NAVLFLCSPEADMIRGQTIIVDGGRS 247 (250)
T ss_pred HHHHHHcCchhcCccCCEEEECCCee
Confidence 9999988753 245778877654
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=135.41 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=132.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+.+++|||||+|+||++++++|+++|++|++ +.+|++|++++.+++++. ++|+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDV 89 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3468999999999999999999999998765 457888888887777643 7899
Q ss_pred EEEccccCCCC--CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-e-EEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP--NVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-I-LINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|||+|+..... .......+....++.|+.++.++++++.+ .+. + ++++||.....+
T Consensus 90 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~---------------- 153 (264)
T PRK12829 90 LVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG---------------- 153 (264)
T ss_pred EEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccC----------------
Confidence 99999965211 11223456788999999999999988743 333 3 666666432111
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhc--ccc--------ccc-ccCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITR--YEK--------VVN-IPNS 198 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~--~~~--------~~~-~~~~ 198 (302)
.+....|+.+|...|.+++.+.. ..++||++++++.. ..++..... +.. ... ....
T Consensus 154 --~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (264)
T PRK12829 154 --YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRM---RRVIEARAQQLGIGLDEMEQEYLEKISLGR 228 (264)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHH---HHHhhhhhhccCCChhHHHHHHHhcCCCCC
Confidence 11236799999999988766532 27789999988632 111111000 000 000 1235
Q ss_pred cccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 199 MTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+++++|+++++..++... .+..|++.++..
T Consensus 229 ~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g~~ 262 (264)
T PRK12829 229 MVEPEDIAATALFLASPAARYITGQAISVDGNVE 262 (264)
T ss_pred CCCHHHHHHHHHHHcCccccCccCcEEEeCCCcc
Confidence 899999999998887642 245888888643
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=133.49 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=130.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
.+++|||||+|+||.+++++|+++|++|++ +.+|+++++++..++++. ++|+
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 84 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDI 84 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 358999999999999999999999999876 457889999888777644 7899
Q ss_pred EEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+|+...... .......+...+++|+.++..+++.+.. .+. ++|++||...+.+.
T Consensus 85 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------- 148 (251)
T PRK07231 85 LVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR---------------- 148 (251)
T ss_pred EEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC----------------
Confidence 999999742111 1223456778899999988877777664 333 59999987665422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--c---hhhHHHHhcccccccccCCcccHhhH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--P---RNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~---~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... . ..+...+... .....+++++|+
T Consensus 149 --~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dv 222 (251)
T PRK07231 149 --PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT----IPLGRLGTPEDI 222 (251)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC----CCCCCCcCHHHH
Confidence 23368999999998887665321 556777664431100 0 0111111111 113457899999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCCCc
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNPGV 228 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~~~ 228 (302)
|.+++.++... ..| .+.+.++..
T Consensus 223 a~~~~~l~~~~~~~~~g~~~~~~gg~~ 249 (251)
T PRK07231 223 ANAALFLASDEASWITGVTLVVDGGRC 249 (251)
T ss_pred HHHHHHHhCccccCCCCCeEEECCCcc
Confidence 99999988653 224 566665543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=134.18 Aligned_cols=195 Identities=16% Similarity=0.092 Sum_probs=134.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. .+|
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 89 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPID 89 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999876 346899988888877643 589
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+.... +............+.+|+.++.++++++.+. + .++|++||.....
T Consensus 90 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------------------ 151 (255)
T PRK07523 90 ILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSAL------------------ 151 (255)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhcc------------------
Confidence 99999997631 1111234456778889999999999988753 2 3588888854322
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+.+....|+.+|...+.+++.+... ..+||+.+.++.... ...+...+.... ....+...+|+|.
T Consensus 152 ~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 227 (255)
T PRK07523 152 ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRT----PAGRWGKVEELVG 227 (255)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 1123478999999999988766431 567777766542110 011111221111 1234678999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCccC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+++.++... .+..+++.++...|
T Consensus 228 ~~~~l~~~~~~~~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 228 ACVFLASDASSFVNGHVLYVDGGITAS 254 (255)
T ss_pred HHHHHcCchhcCccCcEEEECCCeecc
Confidence 999988753 23488888876544
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=134.45 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=132.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++.+++..++++. ++|
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d 84 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVD 84 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCcc
Confidence 468999999999999999999999998876 567888888887766543 789
Q ss_pred EEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+.... +.......++...++.|+.++..+++++... +-++|++||...+.+
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~----------------- 147 (258)
T PRK07890 85 ALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS----------------- 147 (258)
T ss_pred EEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC-----------------
Confidence 99999986421 1112334677889999999999999998752 336899988654331
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhccc--c---------cccccCCc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYE--K---------VVNIPNSM 199 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~--~---------~~~~~~~~ 199 (302)
.+....|+.+|...+.+++.+.. ...++|+.++++.. ..++....... . .......+
T Consensus 148 -~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (258)
T PRK07890 148 -QPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPL---KGYFRHQAGKYGVTVEQIYAETAANSDLKRL 223 (258)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHH---HHHhhhcccccCCCHHHHHHHHhhcCCcccc
Confidence 12347899999999998877542 26788888887632 11221111100 0 00112346
Q ss_pred ccHhhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 200 TILDELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
.+++|++++++.+++.. ..| .+.+.++
T Consensus 224 ~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg 254 (258)
T PRK07890 224 PTDDEVASAVLFLASDLARAITGQTLDVNCG 254 (258)
T ss_pred CCHHHHHHHHHHHcCHhhhCccCcEEEeCCc
Confidence 78999999999988742 223 4555544
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-17 Score=146.20 Aligned_cols=204 Identities=13% Similarity=-0.004 Sum_probs=139.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------------eecCCCChhhHHHHHhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------------GSGRLENRASLEADIAA 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------------~~~dl~~~~~~~~~~~~ 60 (302)
.++||||||+|+||++++++|+++|++|++ +.+|+.|.+++.+.+.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg- 158 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG- 158 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc-
Confidence 357999999999999999999999998875 3478888888888888
Q ss_pred cCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 61 VKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 61 ~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
++|+|||++|... ....++...+++|+.++.+++++|++.++ +||++||.+++... ..+. ..
T Consensus 159 -giDiVVn~AG~~~-----~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g----------~p~~-~~ 221 (576)
T PLN03209 159 -NASVVICCIGASE-----KEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVG----------FPAA-IL 221 (576)
T ss_pred -CCCEEEEcccccc-----ccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccC----------cccc-ch
Confidence 8999999998651 11224566788999999999999999886 49999997653110 0011 11
Q ss_pred CCCCCchhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--
Q 022112 140 NFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
. ....|...|..+|+.+... .+++++|++++.++....... ..+.....- ......+..+|+|++++.++..+
T Consensus 222 ~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t--~~v~~~~~d-~~~gr~isreDVA~vVvfLasd~~a 297 (576)
T PLN03209 222 N-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKET--HNLTLSEED-TLFGGQVSNLQVAELMACMAKNRRL 297 (576)
T ss_pred h-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCccccccc--cceeecccc-ccCCCccCHHHHHHHHHHHHcCchh
Confidence 1 1256777888889887654 667999999998652211100 000000000 01233578899999999988753
Q ss_pred -CCCeEEecCCCccCHHHHHHHHH
Q 022112 217 -LTGIWNFTNPGVVSHNEILEMYR 239 (302)
Q Consensus 217 -~~~~~~~~~~~~~s~~e~~~~~~ 239 (302)
...+|.+.++.......+.+++.
T Consensus 298 s~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 298 SYCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred ccceEEEEEeCCCCCCCCHHHHHH
Confidence 24689998875433344444444
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=132.58 Aligned_cols=194 Identities=13% Similarity=0.106 Sum_probs=129.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|+|
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l 88 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDAL 88 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 3468999999999999999999999988876 468888988876655432 58999
Q ss_pred EEccccCCC---CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGR---PNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+|+.... +.......++...+++|+.++.++++++.+ .+.++|++||...+.+.
T Consensus 89 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~----------------- 151 (255)
T PRK05717 89 VCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE----------------- 151 (255)
T ss_pred EECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC-----------------
Confidence 999997521 011123456778999999999999999964 23468888887543311
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+++.+... ..++|+++..+...... ...+............+.+.+|++.++..+
T Consensus 152 -~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~va~~~~~l 228 (255)
T PRK05717 152 -PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRR--AEPLSEADHAQHPAGRVGTVEDVAAMVAWL 228 (255)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCcccccc--chHHHHHHhhcCCCCCCcCHHHHHHHHHHH
Confidence 12368999999999887665322 55666666654211110 011110000011123467899999999988
Q ss_pred HhcC----CCCeEEecCC
Q 022112 213 AKRN----LTGIWNFTNP 226 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~ 226 (302)
++.. .+..+.+.++
T Consensus 229 ~~~~~~~~~g~~~~~~gg 246 (255)
T PRK05717 229 LSRQAGFVTGQEFVVDGG 246 (255)
T ss_pred cCchhcCccCcEEEECCC
Confidence 8642 2346666554
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-16 Score=134.65 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=133.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++|++|||||+|+||++++++|+++|++|++ +.+|+++.+.+.+++++. +
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999998765 467888888887777643 7
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|+|||+|+.... +..+....++...+++|+.++.++++++... +.++|++||...|.+..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~~-------------- 190 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGNE-------------- 190 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCCC--------------
Confidence 8999999996421 1112234566789999999999999998763 34699999987765321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
....|+.+|...+.+++.+... ..++|+.++.+.... ....+..+.. ......+.+.+|+|+
T Consensus 191 ----~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dva~ 262 (290)
T PRK06701 191 ----TLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGS----NTPMQRPGQPEELAP 262 (290)
T ss_pred ----CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHHHHHHh----cCCcCCCcCHHHHHH
Confidence 2257999999999988776432 445555554432110 0111111111 112345788999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.++... .+.++++.++.
T Consensus 263 ~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 263 AYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred HHHHHcCcccCCccCcEEEeCCCc
Confidence 999988753 23477777654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=131.09 Aligned_cols=191 Identities=11% Similarity=0.042 Sum_probs=133.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~ 73 (302)
+++++||||+|+||+++++.|+++|++|++ +.+|+++.+++.+.++.. ++|+|||+|+..
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~~ 88 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGIA 88 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 468999999999999999999999999887 457888888888877643 589999999975
Q ss_pred CCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 74 GRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
.... .+....+....+.+|+.++.++++++.+. + .++|++||...+.+. +....|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~y 150 (245)
T PRK07060 89 SLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------------PDHLAY 150 (245)
T ss_pred CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------------CCCcHh
Confidence 2111 11233456777889999999999988753 2 368999987655421 123689
Q ss_pred hhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 147 SKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
+.+|...|.+++.++.. ..+||++++++... ........+... .....+++++|+++++..+++.
T Consensus 151 ~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~~~~~l~~~ 226 (245)
T PRK07060 151 CASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA----IPLGRFAEVDDVAAPILFLLSD 226 (245)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc----CCCCCCCCHHHHHHHHHHHcCc
Confidence 99999999988765321 56788877765311 011111111111 1235688999999999999975
Q ss_pred C----CCCeEEecCC
Q 022112 216 N----LTGIWNFTNP 226 (302)
Q Consensus 216 ~----~~~~~~~~~~ 226 (302)
+ .+..+++.++
T Consensus 227 ~~~~~~G~~~~~~~g 241 (245)
T PRK07060 227 AASMVSGVSLPVDGG 241 (245)
T ss_pred ccCCccCcEEeECCC
Confidence 3 2347777665
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=132.50 Aligned_cols=186 Identities=13% Similarity=0.038 Sum_probs=129.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|+||+.+++.|+++|++|++ +.+|+.|.+++..+++.. ++|+|
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 86 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDAL 86 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEE
Confidence 358999999999999999999999999877 346788888777766642 68999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+++..... ............+..|+.++.++++++.+ .+. ++|++||...+...
T Consensus 87 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------ 148 (239)
T PRK12828 87 VNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG------------------ 148 (239)
T ss_pred EECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC------------------
Confidence 9999864210 11122345567788999999999888753 333 58999997766522
Q ss_pred CCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+++.+.. ...+||+.++++.... .........+++++|+|++++.+
T Consensus 149 ~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~-----------~~~~~~~~~~~~~~dva~~~~~~ 217 (239)
T PRK12828 149 PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRA-----------DMPDADFSRWVTPEQIAAVIAFL 217 (239)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhh-----------cCCchhhhcCCCHHHHHHHHHHH
Confidence 2336899999988887765432 1567777777652100 00011123478999999999998
Q ss_pred HhcCC----CCeEEecCCCc
Q 022112 213 AKRNL----TGIWNFTNPGV 228 (302)
Q Consensus 213 ~~~~~----~~~~~~~~~~~ 228 (302)
+.... +..+++.++..
T Consensus 218 l~~~~~~~~g~~~~~~g~~~ 237 (239)
T PRK12828 218 LSDEAQAITGASIPVDGGVA 237 (239)
T ss_pred hCcccccccceEEEecCCEe
Confidence 87531 34777777643
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-16 Score=132.50 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=133.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 85 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHVD 85 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 457999999999999999999999998874 468999999888777653 689
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+||....+ .......+....+++|+.++.++++++.. . +.++|++||...+.+
T Consensus 86 ~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~---------------- 149 (275)
T PRK05876 86 VVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP---------------- 149 (275)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC----------------
Confidence 999999975211 11223446677889999999999988753 3 245899998765542
Q ss_pred CCCCCCCchhhhHHHHHHHHHh----hcCc----eEEeeecccCCCCCCchhhHH-HHhcccc-----cccccCCcccHh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKN----FENV----CTLRVRMPISSDLSNPRNFIT-KITRYEK-----VVNIPNSMTILD 203 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~----~~~~----~~lR~~~v~g~~~~~~~~~~~-~~~~~~~-----~~~~~~~~i~v~ 203 (302)
.+....|+.+|...+.+.+. +... .+++|+.+..+.......... ....... .....+++++++
T Consensus 150 --~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (275)
T PRK05876 150 --NAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIRGAACAQSSTTGSPGPLPLQDDNLGVD 227 (275)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhhcCccccccccccccccccccccCCCHH
Confidence 12347899999975555443 3221 556666655432111000000 0000000 011345789999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhh
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQY 241 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~ 241 (302)
|+|++++.++.++ ..|.+.+ .....++.....+.
T Consensus 228 dva~~~~~ai~~~--~~~~~~~--~~~~~~~~~~~~~~ 261 (275)
T PRK05876 228 DIAQLTADAILAN--RLYVLPH--AASRASIRRRFERI 261 (275)
T ss_pred HHHHHHHHHHHcC--CeEEecC--hhhHHHHHHHHHHH
Confidence 9999999999864 3455543 34455555555444
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=131.87 Aligned_cols=194 Identities=14% Similarity=0.057 Sum_probs=130.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++..++++. +
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 458999999999999999999999988766 345888888777666542 7
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCc-cccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGC-IFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~-vy~~~~~~~~~~~~~~~ 134 (302)
+|+|||+|+....+ .......++...+++|+.++.++++++.+ .+ .++|++||.. .++.
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------- 148 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------- 148 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC-------------
Confidence 89999999865311 11223456678889999998877777654 34 3688888754 2331
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhccc-----cc------ccc
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYE-----KV------VNI 195 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~-----~~------~~~ 195 (302)
+....|+.+|...+.+++.+... ..+||+.++++.... .++....... .. ...
T Consensus 149 ------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T PRK12384 149 ------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ--SLLPQYAKKLGIKPDEVEQYYIDKVP 220 (259)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh--hhhHHHHHhcCCChHHHHHHHHHhCc
Confidence 12368999999988887665421 567777666543211 1222111000 00 012
Q ss_pred cCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 196 PNSMTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
.+.+++.+|++.+++.++.+. .+.+|++.+++.
T Consensus 221 ~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~~ 257 (259)
T PRK12384 221 LKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQV 257 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCEE
Confidence 356889999999999887653 235799988754
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=133.02 Aligned_cols=192 Identities=17% Similarity=0.135 Sum_probs=129.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||++|+++|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 84 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDV 84 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 458999999999999999999999988765 567999999988877653 7899
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+++....+. ...........+.+|+.++.++.+++ ++.+. +++++||...+.+.
T Consensus 85 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~----------------- 147 (252)
T PRK06138 85 LVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG----------------- 147 (252)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC-----------------
Confidence 999999753111 12234566778999999987777665 34443 58888886543211
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC------chhhHHHHhcccccccccCCcccHhhH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN------PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~------~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+++.+.. ...+||++++++.... ....+........ ....+++.+|+
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~ 223 (252)
T PRK06138 148 -RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRARH---PMNRFGTAEEV 223 (252)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhcC---CCCCCcCHHHH
Confidence 1236899999999998876532 2667788776652110 0001111111111 12247899999
Q ss_pred HHHHHHHHhcCC---CC-eEEecCC
Q 022112 206 LPISIEMAKRNL---TG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~~---~~-~~~~~~~ 226 (302)
+++++.++..+. .| .+.+.++
T Consensus 224 a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 224 AQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred HHHHHHHcCchhcCccCCEEEECCC
Confidence 999999987642 24 5655544
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-16 Score=130.34 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=130.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++++.++.. ++|
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d 82 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVD 82 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999988765 578888888887776632 589
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+....+. ...........+++|+.++.++++++.. .+ .++|++||...+....
T Consensus 83 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~~--------------- 147 (250)
T TIGR03206 83 VLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGSS--------------- 147 (250)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCCC---------------
Confidence 9999998642111 1122345567899999999998888753 33 3599999977665321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-------chhhHHHHhcccccccccCCcccHh
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-------PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
....|+.+|.+.+.+++.+... .++||+.++++.... +..+...+.... ...-+...+
T Consensus 148 ---~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 220 (250)
T TIGR03206 148 ---GEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAI----PLGRLGQPD 220 (250)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcC----CccCCcCHH
Confidence 2368999998888877665322 667777776642110 011111211111 122356789
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
|+|+++..++... .+.++++.++.
T Consensus 221 dva~~~~~l~~~~~~~~~g~~~~~~~g~ 248 (250)
T TIGR03206 221 DLPGAILFFSSDDASFITGQVLSVSGGL 248 (250)
T ss_pred HHHHHHHHHcCcccCCCcCcEEEeCCCc
Confidence 9999999988653 23588887653
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-16 Score=133.07 Aligned_cols=191 Identities=14% Similarity=0.053 Sum_probs=128.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-----CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
+++++||||+|+||++++++|+++|++|++ +.+|++|.+++..++++. ++|+|||+|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~a 82 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNA 82 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 468999999999999999999999999887 568999999888777643 799999999
Q ss_pred ccCCCC-CcchhhhhHHHHHHHhHHHH----HHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVTGRP-NVDWCESHKVETIRTNVVGT----LTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~n~~~~----~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|....+ ..+....++...+++|+.++ ..++..+++.+. ++|++||...+.. .+...
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~------------------~~~~~ 144 (273)
T PRK06182 83 GYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIY------------------TPLGA 144 (273)
T ss_pred CcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCC------------------CCCcc
Confidence 976211 11123456788899999885 445556666553 6899988543211 11225
Q ss_pred chhhhHHHHHHHHHhhc--------CceEEeeecccCCCCCCchhhHHHHhcc---cc----------cc---cccCCcc
Q 022112 145 FYSKTKAMVEELLKNFE--------NVCTLRVRMPISSDLSNPRNFITKITRY---EK----------VV---NIPNSMT 200 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~~~~~~~~~~~---~~----------~~---~~~~~~i 200 (302)
.|+.+|...+.+.+.+. ...+++|+++..+... .....+... .. .. ...+.+.
T Consensus 145 ~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (273)
T PRK06182 145 WYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGD---IAADHLLKTSGNGAYAEQAQAVAASMRSTYGSGRLS 221 (273)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccch---hhhhhhcccccccchHHHHHHHHHHHHHhhccccCC
Confidence 79999999998865442 1266788877654210 000000000 00 00 0123567
Q ss_pred cHhhHHHHHHHHHhcCC-CCeEEecC
Q 022112 201 ILDELLPISIEMAKRNL-TGIWNFTN 225 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~~-~~~~~~~~ 225 (302)
..+|+|++++.++.+.. ...|+++.
T Consensus 222 ~~~~vA~~i~~~~~~~~~~~~~~~g~ 247 (273)
T PRK06182 222 DPSVIADAISKAVTARRPKTRYAVGF 247 (273)
T ss_pred CHHHHHHHHHHHHhCCCCCceeecCc
Confidence 89999999999998653 45677665
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-16 Score=129.78 Aligned_cols=191 Identities=16% Similarity=0.124 Sum_probs=129.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||||+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGGV 84 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 368999999999999999999999999855 345888888887776642 68
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CC-eEEEEcCCc-cccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----GL-ILINYATGC-IFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+|+..... ........+...+..|+.++.++++++... +. ++|++||.. +++.
T Consensus 85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~--------------- 149 (248)
T PRK05557 85 DILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN--------------- 149 (248)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC---------------
Confidence 9999999975311 112233466778899999999999888753 32 588888853 3331
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+.. ..+++|+.+..+.... ...+........ ....+.+.+|+++
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~va~ 221 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVKEAILAQI----PLGRLGQPEEIAS 221 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 1236899999999887765432 1566776654332111 112222222211 1334678999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
++..++... .+..|++.++.
T Consensus 222 ~~~~l~~~~~~~~~g~~~~i~~~~ 245 (248)
T PRK05557 222 AVAFLASDEAAYITGQTLHVNGGM 245 (248)
T ss_pred HHHHHcCcccCCccccEEEecCCc
Confidence 998887641 23588888753
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-16 Score=128.93 Aligned_cols=191 Identities=13% Similarity=0.108 Sum_probs=129.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++.+|||||+|+||++++++|+++|+.|+. +.+|++|.+++.+++... ++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 347999999999999999999999987654 567888888887777643 68
Q ss_pred CEEEEccccCCCC--CcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCcc-ccCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP--NVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCI-FEYDSGHPLGSGIG 132 (302)
Q Consensus 64 d~Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~v-y~~~~~~~~~~~~~ 132 (302)
|+|||+|+..... .......++...+++|+.++.++++++.+. +.++|++||... ++...
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~--------- 152 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPG--------- 152 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCCC---------
Confidence 9999999975211 111233466788999999999988887653 124888888653 33110
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
....|+.+|...+.+++.+.. ..++||+.++++.... ...++..+....+ ..-+.++
T Consensus 153 ---------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~ 219 (248)
T PRK06123 153 ---------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIP----MGRGGTA 219 (248)
T ss_pred ---------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCC----CCCCcCH
Confidence 114699999999998766532 2778888888763211 1122222221111 1112478
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCC
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
+|++++++.++... .+..|++.++
T Consensus 220 ~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 220 EEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred HHHHHHHHHHhCccccCccCCEEeecCC
Confidence 99999999988753 2358888765
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=132.36 Aligned_cols=182 Identities=13% Similarity=0.031 Sum_probs=126.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||.++++.|+++|++|++ +.+|++|.+++..+++.. ++|
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999998876 467888888887777643 689
Q ss_pred EEEEccccCCCCCcc-h-hhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVD-W-CESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~-~-~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+....+... . ..+.....+++|+.++.++++.+.. .+.++|++||...+.+.
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------- 144 (263)
T PRK06181 81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGV---------------- 144 (263)
T ss_pred EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCC----------------
Confidence 999999976311111 1 2334567899999999999998853 23468888887665422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhc--ccc---cccccCCcccHhhH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITR--YEK---VVNIPNSMTILDEL 205 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~--~~~---~~~~~~~~i~v~D~ 205 (302)
++...|+.+|...+.+.+.+.. ...++|+++..+. ...... +.. .......+++++|+
T Consensus 145 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dv 215 (263)
T PRK06181 145 --PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDI-------RKRALDGDGKPLGKSPMQESKIMSAEEC 215 (263)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCc-------chhhccccccccccccccccCCCCHHHH
Confidence 1237899999999988765432 1556666654431 111111 111 11123478999999
Q ss_pred HHHHHHHHhcCCCCe
Q 022112 206 LPISIEMAKRNLTGI 220 (302)
Q Consensus 206 a~~~~~~~~~~~~~~ 220 (302)
|++++.+++.....+
T Consensus 216 a~~i~~~~~~~~~~~ 230 (263)
T PRK06181 216 AEAILPAIARRKRLL 230 (263)
T ss_pred HHHHHHHhhCCCCEE
Confidence 999999998643333
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=132.28 Aligned_cols=192 Identities=17% Similarity=0.123 Sum_probs=128.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhc-----CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAV-----KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~ 72 (302)
+++++||||+|+||++++++|+++|++|++ +.+|++|++++.++++.. .+|+|||+||.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPIPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 358999999999999999999999998876 678999999988887743 68999999997
Q ss_pred CCCCCc-chhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 73 TGRPNV-DWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
...+.. .....+....+++|+.++.++++++ ++.+. ++|++||...+.. .+....|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~------------------~~~~~~Y 145 (270)
T PRK06179 84 GLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLP------------------APYMALY 145 (270)
T ss_pred CCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCC------------------CCCccHH
Confidence 631111 1234567889999999999888875 44443 5889988654431 1233689
Q ss_pred hhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc---hhhHHH--Hhccc--c-cccccCCcccHhhHHHHHH
Q 022112 147 SKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP---RNFITK--ITRYE--K-VVNIPNSMTILDELLPISI 210 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~---~~~~~~--~~~~~--~-~~~~~~~~i~v~D~a~~~~ 210 (302)
+.+|...+.+++.+.. ..+++|+++..+..... ...+.. ..... . ...........+|+|+.++
T Consensus 146 ~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~ 225 (270)
T PRK06179 146 AASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVAKAVKKADAPEVVADTVV 225 (270)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 9999999988766422 26677777655421110 000000 00000 0 0011223456799999999
Q ss_pred HHHhcCCCC-eEEe
Q 022112 211 EMAKRNLTG-IWNF 223 (302)
Q Consensus 211 ~~~~~~~~~-~~~~ 223 (302)
.++..+..+ .|..
T Consensus 226 ~~~~~~~~~~~~~~ 239 (270)
T PRK06179 226 KAALGPWPKMRYTA 239 (270)
T ss_pred HHHcCCCCCeeEec
Confidence 999876543 5544
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-16 Score=130.34 Aligned_cols=198 Identities=16% Similarity=0.085 Sum_probs=127.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++. .
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 83 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGK 83 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999988765 367999998888777643 4
Q ss_pred CCEEEEccccCCC----CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR----PNVDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 63 ~d~Vi~~a~~~~~----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
+|+|||+|+.... +............+++|+.++..+++++. +.+. ++|++||...+.... ...
T Consensus 84 id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~-------~~~ 156 (256)
T PRK09186 84 IDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPK-------FEI 156 (256)
T ss_pred ccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhcccc-------chh
Confidence 8999999974310 01122334567778888887776665554 3333 589999865443211 111
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
.++.+...+ ..|+.+|...+.+.+.+... ..++|+.++.. ....+....... .....+++.+|+
T Consensus 157 ~~~~~~~~~-~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~---~~~~~~~~~~~~----~~~~~~~~~~dv 228 (256)
T PRK09186 157 YEGTSMTSP-VEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDN---QPEAFLNAYKKC----CNGKGMLDPDDI 228 (256)
T ss_pred ccccccCCc-chhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCC---CCHHHHHHHHhc----CCccCCCCHHHh
Confidence 233333223 47999999999887654322 45666655442 122222222111 112457899999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
|++++.++... ..| .+++.++
T Consensus 229 a~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 229 CGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred hhhHhheeccccccccCceEEecCC
Confidence 99999999653 234 5565554
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.5e-16 Score=129.47 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=127.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d 64 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|++++.++++. .++|
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id 91 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVD 91 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999988765 56789999888766653 2689
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+.... +........+...++.|+.++.++++++.+. +. ++|++||...+.+..
T Consensus 92 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~-------------- 157 (259)
T PRK08213 92 ILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNP-------------- 157 (259)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCC--------------
Confidence 99999986421 1112234466778899999999999988654 33 589998876544221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+..++...|+.+|...+.+++++... ..++|+++..+... ....+...+....+ ..-+...+|++.+
T Consensus 158 ~~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~va~~ 233 (259)
T PRK08213 158 PEVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTP----LGRLGDDEDLKGA 233 (259)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCC----CCCCcCHHHHHHH
Confidence 00123378999999999998776432 33444443322110 01112222222111 1223467999999
Q ss_pred HHHHHhcC---C-CCeEEecCC
Q 022112 209 SIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~---~-~~~~~~~~~ 226 (302)
+..++... . +..+++.++
T Consensus 234 ~~~l~~~~~~~~~G~~~~~~~~ 255 (259)
T PRK08213 234 ALLLASDASKHITGQILAVDGG 255 (259)
T ss_pred HHHHhCccccCccCCEEEECCC
Confidence 88887642 2 336666654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=131.66 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=103.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc------CCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV------KPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~------~~d~Vi~ 68 (302)
+++++|||||+|+||+++++.|.++|++|++ +.+|++|.+++..+++.. ++|+|||
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~ 82 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN 82 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence 4568999999999999999999999999876 567999998887776642 6899999
Q ss_pred ccccCCCCCc-chhhhhHHHHHHHhHHH----HHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRPNV-DWCESHKVETIRTNVVG----TLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 69 ~a~~~~~~~~-~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
+|+....+.. .....+....+++|+.+ +..+++.+++.+. ++|++||...+. +.+.
T Consensus 83 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~------------------~~~~ 144 (277)
T PRK05993 83 NGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLV------------------PMKY 144 (277)
T ss_pred CCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcC------------------CCCc
Confidence 9987631111 12334567789999998 5566677766654 589998854332 1123
Q ss_pred CCchhhhHHHHHHHHHhhcC--------ceEEeeeccc
Q 022112 143 GSFYSKTKAMVEELLKNFEN--------VCTLRVRMPI 172 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~ 172 (302)
...|+.+|...+.+++.+.. ...++|+.+-
T Consensus 145 ~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~ 182 (277)
T PRK05993 145 RGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIE 182 (277)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCcc
Confidence 47899999999998876532 1556666553
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=127.18 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=129.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+.+++. ++
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGRI 84 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 458999999999999999999999998764 457899998888877753 78
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|+|||+|+...... ......+....+.+|+.++.++++++.+. +.++|++||...+.+
T Consensus 85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------------ 146 (245)
T PRK12937 85 DVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALP------------------ 146 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCC------------------
Confidence 99999999652111 12234466788999999999999888653 236888887544321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.+....|+.+|...+.+++.+... ..++|+++..+... ........+.+..+ ..-+.+.+|+++++
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~d~a~~~ 222 (245)
T PRK12937 147 LPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAP----LERLGTPEEIAAAV 222 (245)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCC----CCCCCCHHHHHHHH
Confidence 123478999999999988765322 45666665433210 11122222222211 22345789999999
Q ss_pred HHHHhcC----CCCeEEecCC
Q 022112 210 IEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~ 226 (302)
..++... .+..+++.++
T Consensus 223 ~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 223 AFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred HHHcCccccCccccEEEeCCC
Confidence 9888653 2346777654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=130.65 Aligned_cols=201 Identities=12% Similarity=0.047 Sum_probs=132.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~ 97 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDI 97 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 468999999999999999999999998765 467899988887776642 7999
Q ss_pred EEEccccCCCC---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCcc-ccCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP---NVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCI-FEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 66 Vi~~a~~~~~~---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~v-y~~~~~~~~~~~~~~~e~ 136 (302)
|||+||....+ ..+....++...+++|+.++.++++++.+. ..++|++||... ++.
T Consensus 98 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------------- 162 (280)
T PLN02253 98 MVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG--------------- 162 (280)
T ss_pred EEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC---------------
Confidence 99999975211 112234677889999999999998887642 235788877543 331
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--Cch-----hhHHHHhcc-cccccccCCcc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPR-----NFITKITRY-EKVVNIPNSMT 200 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~-----~~~~~~~~~-~~~~~~~~~~i 200 (302)
+....|+.+|...|.+++.+... ..++|+.+..+... .+. ..+..+... ..........+
T Consensus 163 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (280)
T PLN02253 163 ----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANLKGVEL 238 (280)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCCcCCCC
Confidence 12258999999999998775432 44566665443110 000 111111000 00001112347
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCccCHHH
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e 233 (302)
+.+|+|++++.++... .+..+++.++...+..+
T Consensus 239 ~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~~~~~~~ 275 (280)
T PLN02253 239 TVDDVANAVLFLASDEARYISGLNLMIDGGFTCTNHS 275 (280)
T ss_pred CHHHHHHHHHhhcCcccccccCcEEEECCchhhccch
Confidence 8999999999988653 23478887765444433
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=126.72 Aligned_cols=192 Identities=11% Similarity=0.080 Sum_probs=132.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++. .++|
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 86 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLD 86 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999766 45688898888877764 2799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+++...... ...........+..|+.++.++++++.+. ..++|++||...+.+.
T Consensus 87 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 150 (250)
T PRK12939 87 GLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA---------------- 150 (250)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC----------------
Confidence 9999999752111 12233456778899999999999887642 2268999886544321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-ch-hhHHHHhcccccccccCCcccHhhHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PR-NFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.+... ..++|+.+..+.... .. .+........ ....+++.+|+|++
T Consensus 151 --~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~ 224 (250)
T PRK12939 151 --PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYLKGR----ALERLQVPDDVAGA 224 (250)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHHhcC----CCCCCCCHHHHHHH
Confidence 12367999999999988765321 556777665432211 11 2333332221 23457899999999
Q ss_pred HHHHHhcC----CCCeEEecCCC
Q 022112 209 SIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~ 227 (302)
++.++... .+..+++.++.
T Consensus 225 ~~~l~~~~~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 225 VLFLLSDAARFVTGQLLPVNGGF 247 (250)
T ss_pred HHHHhCccccCccCcEEEECCCc
Confidence 99998753 23477777653
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=129.55 Aligned_cols=182 Identities=18% Similarity=0.145 Sum_probs=120.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~ 68 (302)
|+++||||+|+||.++++.|+++|++|++ +.+|+++.+++.++++.. ++|.|||
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~ 80 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN 80 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 68999999999999999999999998776 467899988887776543 7999999
Q ss_pred ccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 69 ~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
+||... .+.......+....+++|+.++..+++.+ ++.+. ++|++||...+.. .+
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------------~~ 142 (248)
T PRK10538 81 NAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------------YA 142 (248)
T ss_pred CCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCC------------------CC
Confidence 998642 11122344567788999999966666655 44443 5888888653221 12
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+.+.+... ..++|+.+.+..... ..+......... ......++..+|+|++++.++
T Consensus 143 ~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~dvA~~~~~l~ 220 (248)
T PRK10538 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN-VRFKGDDGKAEK-TYQNTVALTPEDVSEAVWWVA 220 (248)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccch-hhccCcHHHHHh-hccccCCCCHHHHHHHHHHHh
Confidence 3368999999999987665321 456666665432110 000000000000 001224578999999999988
Q ss_pred hcC
Q 022112 214 KRN 216 (302)
Q Consensus 214 ~~~ 216 (302)
..+
T Consensus 221 ~~~ 223 (248)
T PRK10538 221 TLP 223 (248)
T ss_pred cCC
Confidence 754
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4e-16 Score=131.71 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=129.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++.+++...+++. .+|+
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 86 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDG 86 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 358999999999999999999999987764 578888888887777642 6899
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|||+|+............+....++.|+.++.++++.+.+ ...++|++||...+.+. +
T Consensus 87 vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------------~ 148 (258)
T PRK08628 87 LVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQ------------------G 148 (258)
T ss_pred EEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCC------------------C
Confidence 9999996521122223356778899999999998888754 23358888886543211 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc-------cccccCCcccHhhHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK-------VVNIPNSMTILDELL 206 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~v~D~a 206 (302)
....|+.+|...+.+++.+... ..++|+.++++.. ..++..+..... .......++..+|+|
T Consensus 149 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva 225 (258)
T PRK08628 149 GTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLY---ENWIATFDDPEAKLAAITAKIPLGHRMTTAEEIA 225 (258)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHH---HHHhhhccCHHHHHHHHHhcCCccccCCCHHHHH
Confidence 3378999999999998776421 5566776665421 111111110000 001123467899999
Q ss_pred HHHHHHHhcC---CCC-eEEecCC
Q 022112 207 PISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
++++.++... ..| .+.+.++
T Consensus 226 ~~~~~l~~~~~~~~~g~~~~~~gg 249 (258)
T PRK08628 226 DTAVFLLSERSSHTTGQWLFVDGG 249 (258)
T ss_pred HHHHHHhChhhccccCceEEecCC
Confidence 9999988653 233 5666554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=133.74 Aligned_cols=197 Identities=14% Similarity=0.079 Sum_probs=134.4
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+|+||||.+|+.+++.|++.+++|++ +.+|+.|.+++.++++ ++|+||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~--g~d~v~~~~~~~~-- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALK--GVDAVFSVTPPSH-- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHT--TCSEEEEESSCSC--
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHc--CCceEEeecCcch--
Confidence 799999999999999999999999988 6788889999999999 9999998877541
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
........+++++|++.+++++++||.. ... .+.....|. .+.-..|...|+.
T Consensus 77 -------------~~~~~~~~~li~Aa~~agVk~~v~ss~~---~~~----------~~~~~~~p~-~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 77 -------------PSELEQQKNLIDAAKAAGVKHFVPSSFG---ADY----------DESSGSEPE-IPHFDQKAEIEEY 129 (233)
T ss_dssp -------------CCHHHHHHHHHHHHHHHT-SEEEESEES---SGT----------TTTTTSTTH-HHHHHHHHHHHHH
T ss_pred -------------hhhhhhhhhHHHhhhccccceEEEEEec---ccc----------ccccccccc-chhhhhhhhhhhh
Confidence 1123445679999999999966677732 111 111112222 3444678899998
Q ss_pred HHhh-cCceEEeeecccCCCCCCchhhHHH-Hhcccc---cc----cccCCc-ccHhhHHHHHHHHHhcC----CCCeEE
Q 022112 157 LKNF-ENVCTLRVRMPISSDLSNPRNFITK-ITRYEK---VV----NIPNSM-TILDELLPISIEMAKRN----LTGIWN 222 (302)
Q Consensus 157 ~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~-~~~~~~---~~----~~~~~~-i~v~D~a~~~~~~~~~~----~~~~~~ 222 (302)
+++. .+++++|+++.+..- ...+... ...... .. +....+ +..+|+++++..++..+ .+..+.
T Consensus 130 l~~~~i~~t~i~~g~f~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~ 206 (233)
T PF05368_consen 130 LRESGIPYTIIRPGFFMENL---LPPFAPVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIF 206 (233)
T ss_dssp HHHCTSEBEEEEE-EEHHHH---HTTTHHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEE
T ss_pred hhhccccceeccccchhhhh---hhhhcccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEE
Confidence 8664 567999998865421 0111110 111111 11 112245 48999999999999764 224677
Q ss_pred ecCCCccCHHHHHHHHHhhcCCCCcc
Q 022112 223 FTNPGVVSHNEILEMYRQYIDPNFTW 248 (302)
Q Consensus 223 ~~~~~~~s~~e~~~~~~~~~g~~~~~ 248 (302)
+++ +.+|..|+++.+.+.+|+++++
T Consensus 207 ~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 207 LAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp EGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred eCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 766 8999999999999999998654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=127.16 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=129.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-----CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~ 73 (302)
.+++|||||+|+||+.++++|+++|++|++ +.+|+++.+++.+.+++. ++|+|||+|+..
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 468999999999999999999999988766 567899999888877642 589999999975
Q ss_pred CCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 74 GRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
.... ......++...+++|+.++..+++++.. .+ .++|++||.....+ .+....|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~------------------~~~~~~Y~ 149 (252)
T PRK08220 88 RMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVP------------------RIGMAAYG 149 (252)
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccC------------------CCCCchhH
Confidence 3111 1123457788999999999999998753 22 35888888643221 12337899
Q ss_pred hhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc--hhh-HHHHh----cccccccccCCcccHhhHHHHHHHH
Q 022112 148 KTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP--RNF-ITKIT----RYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~--~~~-~~~~~----~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
.+|...+.+++.+... ..++|+.++++..... ... ..... ...........+++++|+|++++.+
T Consensus 150 ~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l 229 (252)
T PRK08220 150 ASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFL 229 (252)
T ss_pred HHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHH
Confidence 9999999988765432 5567776666421100 000 00000 0000001134678999999999998
Q ss_pred HhcC----CCCeEEecCC
Q 022112 213 AKRN----LTGIWNFTNP 226 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~ 226 (302)
+... .+.++.+.++
T Consensus 230 ~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 230 ASDLASHITLQDIVVDGG 247 (252)
T ss_pred hcchhcCccCcEEEECCC
Confidence 8642 2235555554
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-15 Score=125.47 Aligned_cols=192 Identities=13% Similarity=0.118 Sum_probs=128.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
|+++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 347999999999999999999999998754 567899999888777643 67
Q ss_pred CEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 64 d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
|+|||+|+...... ......+....+++|+.++.++++++... +.++|++||...+.+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~----------- 149 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA----------- 149 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC-----------
Confidence 99999999642101 11233456688999999998877766442 2359999886543211
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+. ....|+.+|...+.+++.+.. ...+||++++++.... ...+...+....+. .-..+.+
T Consensus 150 -----~~-~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 219 (247)
T PRK09730 150 -----PG-EYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPM----QRGGQPE 219 (247)
T ss_pred -----CC-cccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHHHhcCCC----CCCcCHH
Confidence 10 114699999999988765432 2789999999874321 12222222221111 1123789
Q ss_pred hHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 204 ELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
|++++++.++... ..| .|++.++
T Consensus 220 dva~~~~~~~~~~~~~~~g~~~~~~g~ 246 (247)
T PRK09730 220 EVAQAIVWLLSDKASYVTGSFIDLAGG 246 (247)
T ss_pred HHHHHHHhhcChhhcCccCcEEecCCC
Confidence 9999999888653 223 6666553
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=126.47 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=124.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|+||.+++++|+++|++|++ +.+|+++.+++..++++. ++|+|
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~l 84 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDIL 84 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999999999999998775 567899998887766542 69999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+|+...... ......++...+++|+.++.++++++.+. + .++|++||...|.+.
T Consensus 85 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----------------- 147 (248)
T TIGR01832 85 VNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG----------------- 147 (248)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC-----------------
Confidence 99999753111 11233466778999999999999887542 2 368999987766522
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--ch-hhHHHHhcccccccccCCcccHhhHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PR-NFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.++.. ..++|+.+..+.... .. .....+... ...+.++..+|+|++
T Consensus 148 -~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dva~~ 222 (248)
T TIGR01832 148 -IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER----IPAGRWGTPDDIGGP 222 (248)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc----CCCCCCcCHHHHHHH
Confidence 12257999999999988776432 556666665432100 00 000111110 113468889999999
Q ss_pred HHHHHhc
Q 022112 209 SIEMAKR 215 (302)
Q Consensus 209 ~~~~~~~ 215 (302)
++.++..
T Consensus 223 ~~~l~s~ 229 (248)
T TIGR01832 223 AVFLASS 229 (248)
T ss_pred HHHHcCc
Confidence 9998875
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-15 Score=124.87 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=131.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++||||||+|+||+++++.|.++|++|++ +.+|+++.+++.++++.. ++
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~ 89 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV 89 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3579999999999999999999999988765 467899988887766542 68
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|+|||+|+............++...+++|+.++.++++++.. .+ .++|++||.....+
T Consensus 90 d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~----------------- 152 (255)
T PRK06113 90 DILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK----------------- 152 (255)
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCC-----------------
Confidence 999999997532122334456777899999999999999863 22 36899988653221
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCC--------chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSN--------PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+....|+.+|...+.+++.++.. ..+|+..+ .|+... .+.+........ ...-+...+|+++
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v-~pg~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~a~ 226 (255)
T PRK06113 153 -NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGI-APGAILTDALKSVITPEIEQKMLQHT----PIRRLGQPQDIAN 226 (255)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEE-ecccccccccccccCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 123368999999999998776432 44565332 222111 111212211111 1233568899999
Q ss_pred HHHHHHhcC----CCCeEEecCCCc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+++.++... .+..+++.++..
T Consensus 227 ~~~~l~~~~~~~~~G~~i~~~gg~~ 251 (255)
T PRK06113 227 AALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_pred HHHHHcCccccCccCCEEEECCCcc
Confidence 999988753 234788877644
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-15 Score=125.15 Aligned_cols=179 Identities=18% Similarity=0.118 Sum_probs=122.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
+++++||||+|+||++++++|+++|++|++ +.+|+++.+++...++.. ++|+||
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVF 85 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 458999999999999999999999998875 456788877766554422 689999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH---hCCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD---KGLILINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~---~~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+|+..... .......++...+++|+.++.++++++.. .+.++|++||.. .|+. +.
T Consensus 86 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~-------------------~~ 146 (249)
T PRK06500 86 INAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM-------------------PN 146 (249)
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------------CC
Confidence 999975311 11234567788999999999999999975 244677776643 4431 12
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---c----hhhHHHHhcccccccccCCcccHhhHHH
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---P----RNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~----~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
...|+.+|...|.+++.+... ..+||+.++++.... . ..+...+....+ ..-+...+|+++
T Consensus 147 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~va~ 222 (249)
T PRK06500 147 SSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVP----LGRFGTPEEIAK 222 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCC----CCCCcCHHHHHH
Confidence 378999999999998665321 567777776642100 0 111122221111 112457899999
Q ss_pred HHHHHHhc
Q 022112 208 ISIEMAKR 215 (302)
Q Consensus 208 ~~~~~~~~ 215 (302)
++..++..
T Consensus 223 ~~~~l~~~ 230 (249)
T PRK06500 223 AVLYLASD 230 (249)
T ss_pred HHHHHcCc
Confidence 99998864
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-15 Score=125.60 Aligned_cols=192 Identities=13% Similarity=0.046 Sum_probs=129.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||.+++++|+++|++|++ +.+|+++.+++..++++. .+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 458999999999999999999999998865 458899988877766542 68
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+|+..... .......++...+.+|+.++..+++++... +.++|++||.....
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~---------------- 145 (256)
T PRK12743 82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT---------------- 145 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC----------------
Confidence 9999999975311 111234567788999999999999887653 23689988853211
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+.++...|+.+|...+.++++++. ...++|+.+..+..... .......... .. ...+.+.+|++.
T Consensus 146 --~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~---~~-~~~~~~~~dva~ 219 (256)
T PRK12743 146 --PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPG---IP-LGRPGDTHEIAS 219 (256)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccChHHHHHHHhc---CC-CCCCCCHHHHHH
Confidence 112347899999999988766532 15677777765422111 1111111111 11 123457899999
Q ss_pred HHHHHHhcC---CCC-eEEecCCC
Q 022112 208 ISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
++..++... ..| .+.+.++.
T Consensus 220 ~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 220 LVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred HHHHHhCccccCcCCcEEEECCCc
Confidence 998888642 234 66666653
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=124.36 Aligned_cols=191 Identities=11% Similarity=0.036 Sum_probs=126.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhh----cCCCEEEEccccCCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAA----VKPTHVFNAAGVTGRP 76 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~----~~~d~Vi~~a~~~~~~ 76 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+.+++ .++|+|||+|+.....
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~ 82 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDDFPGELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIALPQ 82 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCCCCC
Confidence 368999999999999999999999999876 56788888877666653 3789999999976311
Q ss_pred Cc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 77 NV-DWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 77 ~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
.. .....+....++.|+.++.++.+++. +.+. ++|++||...|+.. ....|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------------~~~~Y~~sK 143 (234)
T PRK07577 83 PLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL-------------------DRTSYSAAK 143 (234)
T ss_pred ChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC-------------------CchHHHHHH
Confidence 11 11344667788899999887776654 3333 58899987766421 236899999
Q ss_pred HHHHHHHHhhcCc--------eEEeeecccCCCCCCc----hhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--
Q 022112 151 AMVEELLKNFENV--------CTLRVRMPISSDLSNP----RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 151 ~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
...+.+++.+... ..+||+.+..+..... ......+....+ .......+|+|.+++.++..+
T Consensus 144 ~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~l~~~~~~ 219 (234)
T PRK07577 144 SALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIP----MRRLGTPEEVAAAIAFLLSDDAG 219 (234)
T ss_pred HHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCC----CCCCcCHHHHHHHHHHHhCcccC
Confidence 9999887664321 6677777654321100 011111111111 122446899999999988753
Q ss_pred -C-CCeEEecCCC
Q 022112 217 -L-TGIWNFTNPG 227 (302)
Q Consensus 217 -~-~~~~~~~~~~ 227 (302)
. +..+.+.++.
T Consensus 220 ~~~g~~~~~~g~~ 232 (234)
T PRK07577 220 FITGQVLGVDGGG 232 (234)
T ss_pred CccceEEEecCCc
Confidence 2 2366666543
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-15 Score=127.49 Aligned_cols=191 Identities=14% Similarity=0.055 Sum_probs=132.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 129 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALGGL 129 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999998865 456888888777666532 68
Q ss_pred CEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++||+|+... .+.......++...+++|+.++..+++++... +.++|++||...+...
T Consensus 130 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~---------------- 193 (294)
T PRK07985 130 DIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS---------------- 193 (294)
T ss_pred CEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC----------------
Confidence 99999998641 11122345677889999999999999998753 4469999997766422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.++.. ..++|+++..+.... .......+.... ....+...+|+|.
T Consensus 194 --~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~----~~~r~~~pedva~ 267 (294)
T PRK07985 194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQT----PMKRAGQPAELAP 267 (294)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccC----CCCCCCCHHHHHH
Confidence 12368999999999887665322 567778777653110 111222221111 1123567899999
Q ss_pred HHHHHHhcCC----CCeEEecCCC
Q 022112 208 ISIEMAKRNL----TGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~~----~~~~~~~~~~ 227 (302)
+++.++.... +.++.+.++.
T Consensus 268 ~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 268 VYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred HHHhhhChhcCCccccEEeeCCCe
Confidence 9999887532 3467776653
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=125.16 Aligned_cols=192 Identities=17% Similarity=0.099 Sum_probs=129.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+++|||||+|+||.++++.|+++|++|++ +.+|+++.+++.+.+++. ++|+||
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi 94 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILV 94 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999999998875 467899988887776643 689999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+...... ......+....+++|+.++.++++++... ..++|++||...+.+. +
T Consensus 95 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~ 156 (255)
T PRK06841 95 NSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL------------------E 156 (255)
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC------------------C
Confidence 9999752111 11234466778999999999999988653 2368999886532211 1
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
....|+.+|...+.+++.++.. ..++|+.+..+.... .......+... .....+.+.+|++++++.
T Consensus 157 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~va~~~~~ 232 (255)
T PRK06841 157 RHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERAKKL----IPAGRFAYPEEIAAAALF 232 (255)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHHHhc----CCCCCCcCHHHHHHHHHH
Confidence 2368999999999887765432 445555543321100 00001111111 113457899999999999
Q ss_pred HHhcC----CCCeEEecCCC
Q 022112 212 MAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~ 227 (302)
++... .+.++.+.++.
T Consensus 233 l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 233 LASDAAAMITGENLVIDGGY 252 (255)
T ss_pred HcCccccCccCCEEEECCCc
Confidence 98753 23467776654
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-15 Score=126.44 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=127.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------eecCCCChhhHHHHHhhc----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
++++|||||+|+||.++++.|+++|++|+. +.+|+++++++.+++...
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 87 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAF 87 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhh
Confidence 468999999999999999999999988543 356888888887776642
Q ss_pred -CCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
++|++||+|+.... +.......+....+++|+.++..+++++.+. +.++++++|+.+....
T Consensus 88 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~-------------- 153 (257)
T PRK12744 88 GRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT-------------- 153 (257)
T ss_pred CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC--------------
Confidence 78999999996421 1122344567889999999999999998753 2346665433222110
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc-cccc---ccccCCcccHhh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR-YEKV---VNIPNSMTILDE 204 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~-~~~~---~~~~~~~i~v~D 204 (302)
+....|+.+|...|.+++++... ..++|+.+..+....... ...... .... ......+.+.+|
T Consensus 154 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d 228 (257)
T PRK12744 154 ----PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEG-AEAVAYHKTAAALSPFSKTGLTDIED 228 (257)
T ss_pred ----CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccc-cchhhcccccccccccccCCCCCHHH
Confidence 12368999999999998776432 445555554331111000 000000 0000 011224778999
Q ss_pred HHHHHHHHHhcC---CCCeEEecCCCc
Q 022112 205 LLPISIEMAKRN---LTGIWNFTNPGV 228 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~~~~~~~~~~ 228 (302)
++.++..+++.. .+.++++.++..
T Consensus 229 va~~~~~l~~~~~~~~g~~~~~~gg~~ 255 (257)
T PRK12744 229 IVPFIRFLVTDGWWITGQTILINGGYT 255 (257)
T ss_pred HHHHHHHhhcccceeecceEeecCCcc
Confidence 999999999853 235788877643
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=124.44 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=129.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|.++|++|++ +.+|+++.+++.++++.. ++
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999988766 356788888877776542 68
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+++..... .......++...++.|+.++.++++++ ++.+. ++|++||...+.+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~--------------- 146 (245)
T PRK12824 82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQ--------------- 146 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCC---------------
Confidence 9999999965211 112234567788999999998886554 44433 58999886554321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... ...+...+.... ....+...+|++++
T Consensus 147 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~va~~ 219 (245)
T PRK12824 147 ---FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQI----PMKRLGTPEEIAAA 219 (245)
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcC----CCCCCCCHHHHHHH
Confidence 12368999999888877665321 557777766542211 112222222111 12345578999999
Q ss_pred HHHHHhcC----CCCeEEecCCCc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+..++... .++.+++.++..
T Consensus 220 ~~~l~~~~~~~~~G~~~~~~~g~~ 243 (245)
T PRK12824 220 VAFLVSEAAGFITGETISINGGLY 243 (245)
T ss_pred HHHHcCccccCccCcEEEECCCee
Confidence 98888542 245888888753
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=142.90 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=135.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||+.+++.|+++|++|++ +.+|+++.+++.+++++. ++|+
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDv 501 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDI 501 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999998776 346888888887777643 7999
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+||....+ ........+...+++|+.++..+++++.+ . +.++|++||...+...
T Consensus 502 vI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~---------------- 565 (681)
T PRK08324 502 VVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG---------------- 565 (681)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC----------------
Confidence 99999965311 11123456778899999999999777753 2 2469999887554311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeeccc-CCCCCCchhhHHHH-hccccc---------ccccCCc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPI-SSDLSNPRNFITKI-TRYEKV---------VNIPNSM 199 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~-g~~~~~~~~~~~~~-~~~~~~---------~~~~~~~ 199 (302)
+....|+.+|...+.+++.+... ..++|+.+| +............. ..+... ....+.+
T Consensus 566 --~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~ 643 (681)
T PRK08324 566 --PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAAYGLSEEELEEFYRARNLLKRE 643 (681)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhhccCChHHHHHHHHhcCCcCCc
Confidence 23378999999999998775321 567778877 44321111110000 111110 1134578
Q ss_pred ccHhhHHHHHHHHHhc---C-CCCeEEecCCCcc
Q 022112 200 TILDELLPISIEMAKR---N-LTGIWNFTNPGVV 229 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~---~-~~~~~~~~~~~~~ 229 (302)
++.+|+|++++.++.. . .+.+|++.++...
T Consensus 644 v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~~~ 677 (681)
T PRK08324 644 VTPEDVAEAVVFLASGLLSKTTGAIITVDGGNAA 677 (681)
T ss_pred cCHHHHHHHHHHHhCccccCCcCCEEEECCCchh
Confidence 9999999999998842 2 2458999887543
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-15 Score=122.85 Aligned_cols=191 Identities=19% Similarity=0.180 Sum_probs=123.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
|+++||||||+|+||..+++.|+++|++|++ +.+|+++.+++.+++++. +
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 4668999999999999999999999988754 457888888877766532 6
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCcc-ccCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCI-FEYDSGHPLGSGI 131 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~v-y~~~~~~~~~~~~ 131 (302)
+|+|||+|+.... +..+....+....+.+|+.++..+++.+.+. +.++|++||... ++..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~--------- 151 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP--------- 151 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC---------
Confidence 8999999996521 1112234456778999999998887544332 134888888643 3311
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--chhhHHHHhcccccccccCCccc
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~ 201 (302)
. ....|+.+|...+.+++.++. ...+||+++..+.... ...+...... . . . ..-+..
T Consensus 152 --------~-~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~-~-~-~-~~~~~~ 218 (248)
T PRK06947 152 --------N-EYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAARLGA-Q-T-P-LGRAGE 218 (248)
T ss_pred --------C-CCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHHHhh-c-C-C-CCCCcC
Confidence 0 124799999999988766532 2668888776542211 1111111111 0 0 1 112356
Q ss_pred HhhHHHHHHHHHhcCC---CC-eEEecC
Q 022112 202 LDELLPISIEMAKRNL---TG-IWNFTN 225 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~---~~-~~~~~~ 225 (302)
.+|+++.++.++.... .| .+.+.+
T Consensus 219 ~e~va~~~~~l~~~~~~~~~G~~~~~~g 246 (248)
T PRK06947 219 ADEVAETIVWLLSDAASYVTGALLDVGG 246 (248)
T ss_pred HHHHHHHHHHHcCccccCcCCceEeeCC
Confidence 8999999999887642 34 455544
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-15 Score=124.67 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=100.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++. ++|+|||+||....
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~~~~ 85 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGIESY 85 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 468999999999999999999999998875 678999999888777643 68999999997521
Q ss_pred -CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 76 -PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 76 -~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
+.......+....+++|+.++..+++++.+. ..++|++||...+.. .+....|+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~------------------~~~~~~Y~~s 147 (258)
T PRK06398 86 GAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAV------------------TRNAAAYVTS 147 (258)
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccC------------------CCCCchhhhh
Confidence 1112234566788999999999998887542 246999998765431 1234789999
Q ss_pred HHHHHHHHHhhc
Q 022112 150 KAMVEELLKNFE 161 (302)
Q Consensus 150 K~~~E~~~~~~~ 161 (302)
|...+.+.+.+.
T Consensus 148 Kaal~~~~~~la 159 (258)
T PRK06398 148 KHAVLGLTRSIA 159 (258)
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=122.69 Aligned_cols=196 Identities=12% Similarity=0.025 Sum_probs=129.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-----CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~ 73 (302)
.+++|||||+|+||++++++|.++|++|++ +.+|++|.+++..++++. ++|+|||+|+..
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGGS 88 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 468999999999999999999999998865 667999998877665432 689999999853
Q ss_pred CC---CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 74 GR---PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 74 ~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
.. +.......++...+++|+.++.++.+++. +.+ .++|++||...+... + +....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------------~-~~~~~ 151 (260)
T PRK06523 89 SAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPL----------------P-ESTTA 151 (260)
T ss_pred ccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCC----------------C-CCcch
Confidence 10 01112345677889999999987766553 333 358899886543311 1 12378
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHH---------------hcccccccccCCcccH
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKI---------------TRYEKVVNIPNSMTIL 202 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~---------------~~~~~~~~~~~~~i~v 202 (302)
|+.+|...+.+++.+... ..++|+++..+.. ..+...+ ....... ...-+...
T Consensus 152 Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ 227 (260)
T PRK06523 152 YAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAA---VALAERLAEAAGTDYEGAKQIIMDSLGGI-PLGRPAEP 227 (260)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccH---HHHHHHHHhhcCCCHHHHHHHHHHHhccC-ccCCCCCH
Confidence 999999999887765422 5577777765421 1111111 0000000 01234568
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|++.++..++... .+..+.+.++...+
T Consensus 228 ~~va~~~~~l~s~~~~~~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 228 EEVAELIAFLASDRAASITGTEYVIDGGTVPT 259 (260)
T ss_pred HHHHHHHHHHhCcccccccCceEEecCCccCC
Confidence 99999999988642 23477887765443
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=122.17 Aligned_cols=191 Identities=16% Similarity=0.117 Sum_probs=125.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++++++.+.+++. ++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999998865 467999998887777643 689
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+.... +.......+....+++|+.++..+++++.+. +.++|++||...+.+.
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 146 (256)
T PRK08643 82 VVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN--------------- 146 (256)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC---------------
Confidence 99999986521 1111224466788999999988777776542 2468888886533211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-----------chhhH-HHHhcccccccccC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-----------PRNFI-TKITRYEKVVNIPN 197 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-----------~~~~~-~~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... +..+. ..+... . ...
T Consensus 147 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~ 219 (256)
T PRK08643 147 ---PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD--I--TLG 219 (256)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc--C--CCC
Confidence 12368999999998887665321 556666665432100 00000 001000 0 122
Q ss_pred CcccHhhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 198 SMTILDELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
.+...+|+|.++..++... ..| .+.+.++
T Consensus 220 ~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg 252 (256)
T PRK08643 220 RLSEPEDVANCVSFLAGPDSDYITGQTIIVDGG 252 (256)
T ss_pred CCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 3567899999999888642 234 5666554
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=124.30 Aligned_cols=168 Identities=15% Similarity=0.046 Sum_probs=118.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEE-----------------eecCCCChhhHHHHHhhc-CCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTY-----------------GSGRLENRASLEADIAAV-KPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~-----------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~ 74 (302)
.+++|||||+|+||+++++.|+++|+ +|++ +.+|+.+.+++.++++.. .+|+|||+|+...
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~ 85 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGIFR 85 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhhcCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 35899999999999999999999998 7665 467899999888887754 4899999999731
Q ss_pred CC--CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 75 RP--NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 75 ~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
.. .......++...+++|+.++.++++++.+ .+ .++|++||...+.+. +....|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~------------------~~~~~y~ 147 (238)
T PRK08264 86 TGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF------------------PNLGTYS 147 (238)
T ss_pred CCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC------------------CCchHhH
Confidence 11 11234567778899999999999998753 23 348888887655421 1336899
Q ss_pred hhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 148 KTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.+|...|.+.+.+... .++||+.+..+.. .. .....+..+|+++.++..+..
T Consensus 148 ~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~-----------~~-----~~~~~~~~~~~a~~~~~~~~~ 207 (238)
T PRK08264 148 ASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMA-----------AG-----LDAPKASPADVARQILDALEA 207 (238)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccccc-----------cc-----CCcCCCCHHHHHHHHHHHHhC
Confidence 9999999887665322 5566655544311 00 011145667788777777764
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-15 Score=122.80 Aligned_cols=192 Identities=16% Similarity=0.048 Sum_probs=124.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|+.|+. +.+|+++.+++.+++++. ++|+||
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi 85 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILV 85 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 458999999999999999999999987754 467899988887776532 689999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+...... ......++...+++|+.++.++++++.+ . ..++|++||...+.+. +
T Consensus 86 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~ 147 (245)
T PRK12936 86 NNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN------------------P 147 (245)
T ss_pred ECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC------------------C
Confidence 9999752111 1223456788899999999998887753 2 2359999886433211 1
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+++.+... ..++|+++..+................ .....+...+|+++++..++
T Consensus 148 ~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ia~~~~~l~ 224 (245)
T PRK12936 148 GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGA---IPMKRMGTGAEVASAVAYLA 224 (245)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHHHHhcC---CCCCCCcCHHHHHHHHHHHc
Confidence 2267999999877776554221 556666553321100000011111110 11233567899999998877
Q ss_pred hcC----CCCeEEecCC
Q 022112 214 KRN----LTGIWNFTNP 226 (302)
Q Consensus 214 ~~~----~~~~~~~~~~ 226 (302)
... .+..+++.++
T Consensus 225 ~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 225 SSEAAYVTGQTIHVNGG 241 (245)
T ss_pred CccccCcCCCEEEECCC
Confidence 542 2347888775
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=119.77 Aligned_cols=192 Identities=9% Similarity=0.040 Sum_probs=125.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~ 72 (302)
+++||||||+|+||++++++|+++|++|++ +.+|++|.+++.+.+.+. ++|++||+|+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence 468999999999999999999999998865 346788888887777653 58999999997
Q ss_pred CCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 73 TGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
.... ..+....++...+++|+.++..++..+... +.++|++||..... .+.+....|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------------~~~~~~~~Y~~ 148 (237)
T PRK12742 86 AVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------------MPVAGMAAYAA 148 (237)
T ss_pred CCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------------CCCCCCcchHH
Confidence 5211 112334577889999999999887666553 34689998854210 11123478999
Q ss_pred hHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---C
Q 022112 149 TKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---L 217 (302)
Q Consensus 149 ~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~ 217 (302)
+|...+.+++.++.. ..++|+.+..+.......+...+ ... . ....+...+|++.++..++... .
T Consensus 149 sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~-~~~--~-~~~~~~~p~~~a~~~~~l~s~~~~~~ 224 (237)
T PRK12742 149 SKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMKDMM-HSF--M-AIKRHGRPEEVAGMVAWLAGPEASFV 224 (237)
T ss_pred hHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccHHHHHH-Hhc--C-CCCCCCCHHHHHHHHHHHcCcccCcc
Confidence 999999988765432 44555555332110101111111 110 0 1123567899999999888652 2
Q ss_pred CC-eEEecCC
Q 022112 218 TG-IWNFTNP 226 (302)
Q Consensus 218 ~~-~~~~~~~ 226 (302)
.| .+.+.++
T Consensus 225 ~G~~~~~dgg 234 (237)
T PRK12742 225 TGAMHTIDGA 234 (237)
T ss_pred cCCEEEeCCC
Confidence 33 5555443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-15 Score=123.89 Aligned_cols=193 Identities=14% Similarity=0.108 Sum_probs=125.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
.++++||||+|+||+++++.|.++|++|++ +.+|++|++++.++++.. ++|+|||+
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ 86 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNN 86 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 468999999999999999999999998865 457999999888777643 68999999
Q ss_pred cccCCC-CCcchhhhhHHHHHHHhHHHHHHHH----HHHHHh-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGR-PNVDWCESHKVETIRTNVVGTLTLA----DVCRDK-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll----~~~~~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
|+.... +.......++...+++|+.++..+. +.+++. +.++|++||...++.. .+..
T Consensus 87 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-----------------~~~~ 149 (255)
T PRK06463 87 AGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA-----------------AEGT 149 (255)
T ss_pred CCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC-----------------CCCc
Confidence 987521 1112234567788999999965554 444433 3468999987665411 1123
Q ss_pred CchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---Cch---hhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPR---NFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~---~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
..|+.+|...+.+++.+... ..++|+++--+-.. ... .+...+.. . ...+.+...+|+++++
T Consensus 150 ~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~va~~~ 225 (255)
T PRK06463 150 TFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRN-K---TVLKTTGKPEDIANIV 225 (255)
T ss_pred cHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHh-C---CCcCCCcCHHHHHHHH
Confidence 67999999999988776432 33444443221100 000 01111111 0 0123456789999999
Q ss_pred HHHHhcC---C-CCeEEecCCC
Q 022112 210 IEMAKRN---L-TGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~---~-~~~~~~~~~~ 227 (302)
+.++... . +..+.+.++.
T Consensus 226 ~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 226 LFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred HHHcChhhcCCCCCEEEECCCe
Confidence 9988753 2 3467776653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.5e-15 Score=123.40 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=129.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||..+++.|+++|++|++ +.+|+++.+++.+.++.. .+|
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLN 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999988765 467788888877666643 589
Q ss_pred EEEEccccCCCCC----------cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN----------VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLG 128 (302)
Q Consensus 65 ~Vi~~a~~~~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~ 128 (302)
+|||+|+...... ...........+++|+.++..+++.+.. . +.++|++||...|+..
T Consensus 85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------ 158 (253)
T PRK08217 85 GLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNM------ 158 (253)
T ss_pred EEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCCC------
Confidence 9999998642100 1123345667888999998877665432 2 2248888887665421
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCc
Q 022112 129 SGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSM 199 (302)
Q Consensus 129 ~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~ 199 (302)
....|+.+|...+.+++++.. ...++|+.+..+.... .+.+...+.... ....+
T Consensus 159 -------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~ 221 (253)
T PRK08217 159 -------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMI----PVGRL 221 (253)
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcC----CcCCC
Confidence 237899999999998776532 1667887776543211 122222222211 13346
Q ss_pred ccHhhHHHHHHHHHhcC--CCCeEEecCCC
Q 022112 200 TILDELLPISIEMAKRN--LTGIWNFTNPG 227 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~--~~~~~~~~~~~ 227 (302)
.+.+|+++++..++... .+.+|++.++.
T Consensus 222 ~~~~~~a~~~~~l~~~~~~~g~~~~~~gg~ 251 (253)
T PRK08217 222 GEPEEIAHTVRFIIENDYVTGRVLEIDGGL 251 (253)
T ss_pred cCHHHHHHHHHHHHcCCCcCCcEEEeCCCc
Confidence 78999999999988753 34588888753
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-15 Score=121.67 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=126.6
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+||||++|+||++++++|+++|++|++ +.+|+++.+++.+++... .+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 589999999999999999999988766 456788888877776542 68999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CC-eEEEEcCCc-cccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----GL-ILINYATGC-IFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+++..... ........+...+++|+.++.++++++.+. +. +++++||.. +|+.
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------------ 142 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------------ 142 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC------------------
Confidence 9999975211 112334567889999999999999988753 22 588888854 4441
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+++.+... .+++|+.+..+.... +..+...+....+ ...+.+++|++.+++
T Consensus 143 -~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~ 217 (239)
T TIGR01830 143 -AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKILSQIP----LGRFGTPEEVANAVA 217 (239)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChHHHHHHHhcCC----cCCCcCHHHHHHHHH
Confidence 12368999999888876654321 566776654431111 1112222222111 234668999999999
Q ss_pred HHHhcC----CCCeEEecCC
Q 022112 211 EMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~ 226 (302)
.++... .+.+||+.++
T Consensus 218 ~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 218 FLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HHhCcccCCcCCCEEEeCCC
Confidence 888542 3458998764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-15 Score=122.31 Aligned_cols=192 Identities=13% Similarity=0.107 Sum_probs=127.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++||||||+|+||.++++.|+++|++|++ +.+|+++++++.+.++.. +
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGK 83 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999988765 346888888877766543 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+++...... ...........+.+|+.++.++++++... + .++|++||...+.+.
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~-------------- 149 (247)
T PRK05565 84 IDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA-------------- 149 (247)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC--------------
Confidence 999999999762111 11234466788999999988888877642 2 248888886544321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+... ..+||+++..+.... .......+.. ......+...+|+++
T Consensus 150 ----~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~~va~ 221 (247)
T PRK05565 150 ----SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGLAE----EIPLGRLGKPEEIAK 221 (247)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHHHh----cCCCCCCCCHHHHHH
Confidence 12367999999888876654322 667887775432111 0111111111 111234568899999
Q ss_pred HHHHHHhcC----CCCeEEecCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~ 226 (302)
+++.++... .+..+++.++
T Consensus 222 ~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 222 VVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred HHHHHcCCccCCccCcEEEecCC
Confidence 999988653 2336666654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=123.77 Aligned_cols=182 Identities=14% Similarity=0.046 Sum_probs=120.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhh------cCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAA------VKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~------~~~d~Vi~~ 69 (302)
++++|||||+|+||.++++.|+++|++|++ +.+|+++.+++.+.++. ..+|.+||+
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ 81 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 357999999999999999999999998876 45677787776655543 257999999
Q ss_pred cccCCC-CCcchhhhhHHHHHHHhHHHHHHH----HHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGR-PNVDWCESHKVETIRTNVVGTLTL----ADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l----l~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
++.... +.......+....++.|+.++.++ ++.+++.+. ++|++||...+.+ .+..
T Consensus 82 ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------------~~~~ 143 (256)
T PRK08017 82 AGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIS------------------TPGR 143 (256)
T ss_pred CCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccC------------------CCCc
Confidence 986521 111123445678899999988775 566666554 4888888533221 1233
Q ss_pred CchhhhHHHHHHHHHhhc---Cc-----eEEeeecccCCCCCCchhhHHHHhccc---cc---ccccCCcccHhhHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFE---NV-----CTLRVRMPISSDLSNPRNFITKITRYE---KV---VNIPNSMTILDELLPIS 209 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~---~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~---~~---~~~~~~~i~v~D~a~~~ 209 (302)
..|+.+|...|.+.+.+. .. .++||+.+.. .+...+.... .. ....+.+++.+|+++++
T Consensus 144 ~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~ 216 (256)
T PRK08017 144 GAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRT-------RFTDNVNQTQSDKPVENPGIAARFTLGPEAVVPKL 216 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCccc-------chhhcccchhhccchhhhHHHhhcCCCHHHHHHHH
Confidence 689999999998765432 11 4455544322 2332222111 10 01234679999999999
Q ss_pred HHHHhcCCCCe
Q 022112 210 IEMAKRNLTGI 220 (302)
Q Consensus 210 ~~~~~~~~~~~ 220 (302)
..+++++...+
T Consensus 217 ~~~~~~~~~~~ 227 (256)
T PRK08017 217 RHALESPKPKL 227 (256)
T ss_pred HHHHhCCCCCc
Confidence 99998765543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=122.55 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=125.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||.+++++|+++|++|++ +.+|+++.+++.+++++. ++|
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 89 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLD 89 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 568999999999999999999999999875 457889988887766643 789
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH-----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD-----K-GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+..... .......++...+.+|+.++.++++++.. . ..++|++||.....
T Consensus 90 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~----------------- 152 (263)
T PRK07814 90 IVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL----------------- 152 (263)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC-----------------
Confidence 999999864211 11223456788999999999999999864 2 23589988853211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+.+....|+.+|...+.+++.+... ..++|+.+....... ...+...+. +.. ....+...+|+|+
T Consensus 153 -~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~va~ 227 (263)
T PRK07814 153 -AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPME-KAT---PLRRLGDPEDIAA 227 (263)
T ss_pred -CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHH-hcC---CCCCCcCHHHHHH
Confidence 1123478999999999988765432 334454443221100 011111111 110 1122457899999
Q ss_pred HHHHHHhcC----CCCeEEecCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~ 226 (302)
+++.++... .+..+.+.++
T Consensus 228 ~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 228 AAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred HHHHHcCccccCcCCCEEEECCC
Confidence 999988652 2235555543
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-14 Score=122.96 Aligned_cols=194 Identities=14% Similarity=0.047 Sum_probs=125.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-----CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
|+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|+|||+|
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a 80 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA 80 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 468999999999999999999999999886 457899988887777543 789999999
Q ss_pred ccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 71 GVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
|..... ..+....+....+++|+.++.++++++.. ...++|++||...+.. .+....
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~------------------~~~~~~ 142 (274)
T PRK05693 81 GYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLV------------------TPFAGA 142 (274)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCC------------------CCCccH
Confidence 965211 11234456778899999999988888743 2235888887543221 112368
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc-----------cc-cccCCcccHhhH
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK-----------VV-NIPNSMTILDEL 205 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~i~v~D~ 205 (302)
|+.+|...+.+.+.+... ..++|+.+..+-................ .. .........+|+
T Consensus 143 Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (274)
T PRK05693 143 YCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASNASREAEQLLAEQSPWWPLREHIQARARASQDNPTPAAEF 222 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccccccchhhcCCCCCccHHHHHHHHHHHHhccCCCCCHHHH
Confidence 999999999887654321 5567766643211110000000000000 00 001123568999
Q ss_pred HHHHHHHHhcCCC-CeEEecC
Q 022112 206 LPISIEMAKRNLT-GIWNFTN 225 (302)
Q Consensus 206 a~~~~~~~~~~~~-~~~~~~~ 225 (302)
|+.++.+++++.. ..|.++.
T Consensus 223 a~~i~~~~~~~~~~~~~~~g~ 243 (274)
T PRK05693 223 ARQLLAAVQQSPRPRLVRLGN 243 (274)
T ss_pred HHHHHHHHhCCCCCceEEecC
Confidence 9999998886543 4555553
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=122.73 Aligned_cols=192 Identities=12% Similarity=0.070 Sum_probs=123.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------ecCCCChhhHHHHHhh--------
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------SGRLENRASLEADIAA-------- 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------~~dl~~~~~~~~~~~~-------- 60 (302)
++++|||||+|+||+++++.|++.|++|++. .+|+++.+++...+++
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNR 83 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhhh
Confidence 4689999999999999999999999988762 3467776665544432
Q ss_pred ---cCCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 61 ---VKPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 61 ---~~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
.++|++||+||....+ ..+.........+++|+.++..+++++... ..++|++||...+...
T Consensus 84 ~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------- 152 (252)
T PRK12747 84 TGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL----------- 152 (252)
T ss_pred cCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC-----------
Confidence 1689999999965211 112233456788899999999999877653 2369999987654311
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+++.++.. ..+.|+++..+.... ........... ......+...+
T Consensus 153 -------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 222 (252)
T PRK12747 153 -------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATT---ISAFNRLGEVE 222 (252)
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHHHHh---cCcccCCCCHH
Confidence 23368999999999988775432 345555554431100 00011111110 00123467899
Q ss_pred hHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 204 ELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 204 D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
|+|+++..++... . +..+.+.++
T Consensus 223 dva~~~~~l~s~~~~~~~G~~i~vdgg 249 (252)
T PRK12747 223 DIADTAAFLASPDSRWVTGQLIDVSGG 249 (252)
T ss_pred HHHHHHHHHcCccccCcCCcEEEecCC
Confidence 9999999988642 2 235666554
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-15 Score=122.76 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=128.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhc-----CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAV-----KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~ 72 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|+|||+|+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 85 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPETVDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGG 85 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhhhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 468999999999999999999999988765 567888988888777643 68999999986
Q ss_pred CCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 73 TGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
.... .......++...+++|+.++..+++++... +.++|++||...+.+ .+....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------------------~~~~~~ 147 (252)
T PRK07856 86 SPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRP------------------SPGTAA 147 (252)
T ss_pred CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCC------------------CCCCch
Confidence 5211 112234566788999999999999988641 236899988654331 123478
Q ss_pred hhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 146 YSKTKAMVEELLKNFENV-------CTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
|+.+|...+.+++.+... ..++|+.+..+... ........+.... ....+...+|+|.+++.++..
T Consensus 148 Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~va~~~~~L~~~ 223 (252)
T PRK07856 148 YGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATV----PLGRLATPADIAWACLFLASD 223 (252)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcC----CCCCCcCHHHHHHHHHHHcCc
Confidence 999999999988765332 33444444332110 0000011111110 123356789999999998865
Q ss_pred C---CCC-eEEecCCCccC
Q 022112 216 N---LTG-IWNFTNPGVVS 230 (302)
Q Consensus 216 ~---~~~-~~~~~~~~~~s 230 (302)
. ..| .+.+.++...+
T Consensus 224 ~~~~i~G~~i~vdgg~~~~ 242 (252)
T PRK07856 224 LASYVSGANLEVHGGGERP 242 (252)
T ss_pred ccCCccCCEEEECCCcchH
Confidence 2 233 67777665443
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-14 Score=122.67 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=125.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc------CCCEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV------KPTHV 66 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~------~~d~V 66 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. .+|++
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~l 85 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPITTV 85 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 58999999999999999999999998765 457888888888777643 28999
Q ss_pred EEccccCC-------CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTG-------RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 67 i~~a~~~~-------~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
||+|+... .+.......+....+++|+.++.++++++.. .+ .++|++||.....
T Consensus 86 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------------- 151 (253)
T PRK08642 86 VNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN-------------- 151 (253)
T ss_pred EECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC--------------
Confidence 99998531 0111223456678899999999999998863 22 3588888753221
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+. .+...|+.+|...+.+++.++.. ..++|+++.-+.... +..+...+... . ....+.+.+|
T Consensus 152 ---~~-~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 223 (253)
T PRK08642 152 ---PV-VPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLIAAT---T-PLRKVTTPQE 223 (253)
T ss_pred ---CC-CCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHHHhc---C-CcCCCCCHHH
Confidence 11 12368999999999998876432 334555543321100 11111111111 1 1234788999
Q ss_pred HHHHHHHHHhcC---C-CCeEEecCC
Q 022112 205 LLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
+++++..++... . +..+.+.++
T Consensus 224 va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 224 FADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred HHHHHHHHcCchhcCccCCEEEeCCC
Confidence 999999988642 2 336666654
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8e-15 Score=124.60 Aligned_cols=187 Identities=13% Similarity=0.048 Sum_probs=122.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d~ 65 (302)
|++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++.. .++|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 57999999999999999999999998865 57889998888776653 26899
Q ss_pred EEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+|+....... .....+....+++|+.++.++.+++ ++.+ .++|++||...+.+.
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------------- 143 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG----------------- 143 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC-----------------
Confidence 9999997631111 1223456667889988877766654 4444 358888887554321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCch---hhHHHHhcccccccccCCcccHhhHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPR---NFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.+.. ...++|+.+..+...... ........ ......+++++|+|+.
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vA~~ 218 (270)
T PRK05650 144 -PAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVG----KLLEKSPITAADIADY 218 (270)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHH----HHhhcCCCCHHHHHHH
Confidence 2337899999997777655432 156677666543211000 00011000 0012346789999999
Q ss_pred HHHHHhcCCCCeEEecC
Q 022112 209 SIEMAKRNLTGIWNFTN 225 (302)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ 225 (302)
++.++++.. .+.+..
T Consensus 219 i~~~l~~~~--~~~~~~ 233 (270)
T PRK05650 219 IYQQVAKGE--FLILPH 233 (270)
T ss_pred HHHHHhCCC--EEEecC
Confidence 999998642 344433
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=122.76 Aligned_cols=173 Identities=18% Similarity=0.118 Sum_probs=119.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++|++|||||+|+||.++++.|+++|++|++ +.+|++|.+++.+.+++. .+|
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id 80 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD 80 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3579999999999999999999999988765 557899998887776542 489
Q ss_pred EEEEccccCCCCCcc--hhhhhHHHHHHHhHHHHHHHHH----HHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVD--WCESHKVETIRTNVVGTLTLAD----VCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~--~~~~~~~~~~~~n~~~~~~ll~----~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+|+....+... ....++...+++|+.++.++++ ++++.+ .++|++||...+.+.
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~--------------- 145 (257)
T PRK07024 81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL--------------- 145 (257)
T ss_pred EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC---------------
Confidence 999999975211111 2345678899999999998777 444443 358888886543211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.+.. ...+||+.+..+.. .. .. . ....++..+|+++.+
T Consensus 146 ---~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~-------~~----~~-~-~~~~~~~~~~~a~~~ 209 (257)
T PRK07024 146 ---PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMT-------AH----NP-Y-PMPFLMDADRFAARA 209 (257)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchh-------hc----CC-C-CCCCccCHHHHHHHH
Confidence 1236899999999998866531 15567777655311 00 00 0 001135789999999
Q ss_pred HHHHhcC
Q 022112 210 IEMAKRN 216 (302)
Q Consensus 210 ~~~~~~~ 216 (302)
+.++.+.
T Consensus 210 ~~~l~~~ 216 (257)
T PRK07024 210 ARAIARG 216 (257)
T ss_pred HHHHhCC
Confidence 9999864
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-14 Score=117.07 Aligned_cols=183 Identities=14% Similarity=0.099 Sum_probs=125.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------eecCCCChhhHHHHHhhc-CCCEEEEccccCCCCCc-chhhhhH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------GSGRLENRASLEADIAAV-KPTHVFNAAGVTGRPNV-DWCESHK 85 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~~~~~-~~~~~~~ 85 (302)
|++|||||+|.||.++++.|.++ ++|++ +.+|+++.++++..++.. ++|+|||+||....+.. .....+.
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~ 79 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSGDVQVDITDPASIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDF 79 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCCceEecCCChHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHH
Confidence 58999999999999999999999 88886 467999999998888765 79999999996521111 1233466
Q ss_pred HHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC
Q 022112 86 VETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN 162 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~ 162 (302)
...+++|+.++.++++++.+. +..++++||..... +.+....|+.+|...+.+.+.+..
T Consensus 80 ~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~------------------~~~~~~~Y~~sK~a~~~~~~~la~ 141 (199)
T PRK07578 80 NVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE------------------PIPGGASAATVNGALEGFVKAAAL 141 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC------------------CCCCchHHHHHHHHHHHHHHHHHH
Confidence 778899999999999988653 33588887754221 112346899999999998876543
Q ss_pred c--eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC-CeEEe
Q 022112 163 V--CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT-GIWNF 223 (302)
Q Consensus 163 ~--~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~ 223 (302)
. ..+|...+..+............ . ....++..+|+|++++.+++.... ++|++
T Consensus 142 e~~~gi~v~~i~Pg~v~t~~~~~~~~------~-~~~~~~~~~~~a~~~~~~~~~~~~g~~~~~ 198 (199)
T PRK07578 142 ELPRGIRINVVSPTVLTESLEKYGPF------F-PGFEPVPAARVALAYVRSVEGAQTGEVYKV 198 (199)
T ss_pred HccCCeEEEEEcCCcccCchhhhhhc------C-CCCCCCCHHHHHHHHHHHhccceeeEEecc
Confidence 2 34666555443211111100000 1 112467899999999999886533 35554
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-14 Score=121.43 Aligned_cols=179 Identities=17% Similarity=0.120 Sum_probs=123.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~ 63 (302)
+|+++|||||+|+||..++++|+++|++|++ +.+|+++.+++..+++. .++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3568999999999999999999999998876 56788998887777664 269
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+...... ......+....+.+|+.++.++++.+. +.+ .++|++||...+.+.
T Consensus 85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------- 149 (241)
T PRK07454 85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF--------------- 149 (241)
T ss_pred CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC---------------
Confidence 99999999652110 111234667788999999888777763 332 358999987766522
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.+.. ...+||+++..+.. ....... ......++..+|+|+++
T Consensus 150 ---~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~-~~~~~~~--------~~~~~~~~~~~~va~~~ 217 (241)
T PRK07454 150 ---PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLW-DTETVQA--------DFDRSAMLSPEQVAQTI 217 (241)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcc-ccccccc--------ccccccCCCHHHHHHHH
Confidence 1236899999999988765431 15677777654321 0000000 00112356889999999
Q ss_pred HHHHhcCCC
Q 022112 210 IEMAKRNLT 218 (302)
Q Consensus 210 ~~~~~~~~~ 218 (302)
+.++..+..
T Consensus 218 ~~l~~~~~~ 226 (241)
T PRK07454 218 LHLAQLPPS 226 (241)
T ss_pred HHHHcCCcc
Confidence 999986543
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=120.27 Aligned_cols=175 Identities=16% Similarity=0.143 Sum_probs=121.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++++||||+|+||++++++|+++|++|++ +.+|+++++++.+++++. ++|
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 86 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSID 86 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCcc
Confidence 358999999999999999999999998876 567888888888777643 789
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+....+. ......+....+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 87 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~---------------- 150 (239)
T PRK07666 87 ILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA---------------- 150 (239)
T ss_pred EEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC----------------
Confidence 9999998753111 1123345678899999999999888864 22 358888886543321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+++.+.. ...+||+.+..+.. ... .+ . ......++..+|+|++++
T Consensus 151 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~---~~~--~~-~----~~~~~~~~~~~~~a~~~~ 218 (239)
T PRK07666 151 --AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMA---VDL--GL-T----DGNPDKVMQPEDLAEFIV 218 (239)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcch---hhc--cc-c----ccCCCCCCCHHHHHHHHH
Confidence 1236799999998888765432 15566666654311 000 00 0 011234577899999999
Q ss_pred HHHhcC
Q 022112 211 EMAKRN 216 (302)
Q Consensus 211 ~~~~~~ 216 (302)
.+++++
T Consensus 219 ~~l~~~ 224 (239)
T PRK07666 219 AQLKLN 224 (239)
T ss_pred HHHhCC
Confidence 999865
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-14 Score=121.96 Aligned_cols=176 Identities=15% Similarity=0.028 Sum_probs=119.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~ 68 (302)
++++|||||||.||+.+++.|+++|++|++ +.+|+++++++.++++.. ++|++||
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~ 84 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVN 84 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 468999999999999999999999998776 457899998877666532 6899999
Q ss_pred ccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 69 ~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
+||...... ...........+++|+.++..+++++.. .+. ++|++||...+.+ .+.
T Consensus 85 ~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------------~~~ 146 (273)
T PRK07825 85 NAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIP------------------VPG 146 (273)
T ss_pred CCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCC------------------CCC
Confidence 999753111 1123345677889999988887776643 333 5899998654331 123
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
...|+.+|...+.+.+.+... .+++|+++..+ +.. +.. ......++..+|+|++++.++.
T Consensus 147 ~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~-------~~~----~~~-~~~~~~~~~~~~va~~~~~~l~ 214 (273)
T PRK07825 147 MATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTE-------LIA----GTG-GAKGFKNVEPEDVAAAIVGTVA 214 (273)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcch-------hhc----ccc-cccCCCCCCHHHHHHHHHHHHh
Confidence 478999999887766553221 44555554322 111 110 0112346789999999999998
Q ss_pred cCCCC
Q 022112 215 RNLTG 219 (302)
Q Consensus 215 ~~~~~ 219 (302)
++...
T Consensus 215 ~~~~~ 219 (273)
T PRK07825 215 KPRPE 219 (273)
T ss_pred CCCCE
Confidence 75443
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-14 Score=121.43 Aligned_cols=191 Identities=17% Similarity=0.145 Sum_probs=127.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
.+++|||||+|+||..++++|+++|++|++ +.+|+++.+++..++++. .+|+
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~ 94 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKIDI 94 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999998765 567888888877776643 6899
Q ss_pred EEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+|+.... +.......+....+++|+.++..+++++.+ .+ .++|++||...+.+.
T Consensus 95 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------- 157 (258)
T PRK06935 95 LVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG----------------- 157 (258)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC-----------------
Confidence 9999996521 111223456778899999998887776653 33 358999987665421
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-c--hhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-P--RNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.++.. ..++|+++..+.... . ......+... . ...-+...+|++.+
T Consensus 158 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~dva~~ 232 (258)
T PRK06935 158 -KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKR--I--PAGRWGEPDDLMGA 232 (258)
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhc--C--CCCCCCCHHHHHHH
Confidence 12368999999999998776432 445666654432100 0 0011111110 0 12346678999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
+..++... .+.++.+.++
T Consensus 233 ~~~l~s~~~~~~~G~~i~~dgg 254 (258)
T PRK06935 233 AVFLASRASDYVNGHILAVDGG 254 (258)
T ss_pred HHHHcChhhcCCCCCEEEECCC
Confidence 99888642 2336666665
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=120.76 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=125.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc--CCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV--KPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~--~~d~Vi~~a~ 71 (302)
|++++||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. .+|.++|+|+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag 80 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG 80 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence 357999999999999999999999999876 568999999998888753 4789999987
Q ss_pred cCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 72 VTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 72 ~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
.... +.......+....+++|+.++.++++++... +.++|++||.. .++ .+....|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~-------------------~~~~~~Y 141 (240)
T PRK06101 81 DCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELA-------------------LPRAEAY 141 (240)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccC-------------------CCCCchh
Confidence 5410 0011233456678999999999999998863 44688888753 222 1233689
Q ss_pred hhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC
Q 022112 147 SKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT 218 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 218 (302)
+.+|...+.+.+.+.. ...+||++++++-... ..+ . ....+..+|+++.++..++....
T Consensus 142 ~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~-~~~-----------~-~~~~~~~~~~a~~i~~~i~~~~~ 208 (240)
T PRK06101 142 GASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDK-NTF-----------A-MPMIITVEQASQEIRAQLARGKS 208 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCC-CCC-----------C-CCcccCHHHHHHHHHHHHhcCCC
Confidence 9999999998776531 1567777776642111 000 0 01135789999999999987655
Q ss_pred CeE
Q 022112 219 GIW 221 (302)
Q Consensus 219 ~~~ 221 (302)
.+|
T Consensus 209 ~~~ 211 (240)
T PRK06101 209 HIY 211 (240)
T ss_pred EEE
Confidence 444
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=121.89 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=115.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
|+++||||||+|+||++++++|+++|++|++ +.+|++|++++..++.. ++|+|||
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~id~vi~ 79 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW-DVDVLLN 79 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC-CCCEEEE
Confidence 3468999999999999999999999998876 34688888888776643 7999999
Q ss_pred ccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 69 ~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
+|+....+ ............+++|+.++.++.+.+ ++.+. ++|++||...+.. .+.
T Consensus 80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~------------------~~~ 141 (257)
T PRK09291 80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLIT------------------GPF 141 (257)
T ss_pred CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccC------------------CCC
Confidence 99976311 111233456677888988877665544 44443 5888888643221 122
Q ss_pred CCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhccccc-----ccccCCcccHhhHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKV-----VNIPNSMTILDELLPI 208 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~-----~~~~~~~i~v~D~a~~ 208 (302)
...|+.+|...|.+++.+.. ...+||+++.-+.... ...+....-..... .....++...+|+++.
T Consensus 142 ~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (257)
T PRK09291 142 TGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDTMAETPKRWYDPARNFTDPEDLAFPLEQFDPQEMIDA 221 (257)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhhhhhhhhhhcchhhHHHhhhhhhccccCCCHHHHHHH
Confidence 36899999999988765432 2556666542210000 00011100000000 0123345678888888
Q ss_pred HHHHHhcC
Q 022112 209 SIEMAKRN 216 (302)
Q Consensus 209 ~~~~~~~~ 216 (302)
++.++..+
T Consensus 222 ~~~~l~~~ 229 (257)
T PRK09291 222 MVEVIPAD 229 (257)
T ss_pred HHHHhcCC
Confidence 88877654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=119.54 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=125.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+.+|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 82 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGEI 82 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 357999999999999999999999988765 358999998887776543 68
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+.... +.......++...+++|+.++..+.+++. +.+. ++|++||.....+
T Consensus 83 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~---------------- 146 (246)
T PRK12938 83 DVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKG---------------- 146 (246)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCC----------------
Confidence 999999997531 11223445678889999999777666554 3443 5888888543211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
.+....|+.+|...+.+.+.+.. ...++|+++..+.... .+.++..+.... ....+...+|++.+
T Consensus 147 --~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~ 220 (246)
T PRK12938 147 --QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI----PVRRLGSPDEIGSI 220 (246)
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHHHHhcC----CccCCcCHHHHHHH
Confidence 12337899999988887765432 1556777665542211 112222222211 12235678999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
+..++... .+..+.+.++
T Consensus 221 ~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 221 VAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred HHHHcCcccCCccCcEEEECCc
Confidence 99887642 2235666554
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=121.82 Aligned_cols=178 Identities=19% Similarity=0.141 Sum_probs=119.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhh------cCCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAA------VKPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~------~~~d~ 65 (302)
|+++|||||+|+||+.++++|+++|++|++ +.+|+++.+++.+++.. .++|+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 467999999999999999999999988776 46789998888776653 26899
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGC-IFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+|+....+. ......+....+.+|+.++.++++++.+ . +.++|++||.. +++..
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------------- 144 (260)
T PRK08267 81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQP---------------- 144 (260)
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCC----------------
Confidence 999999763111 1123456788999999999999888753 2 34688888864 33311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
....|+.+|...+.+.+++... ..++|+++........ ....... .....-.+..+|+|+++
T Consensus 145 ---~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~------~~~~~~~~~~~~va~~~ 215 (260)
T PRK08267 145 ---GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGS------TKRLGVRLTPEDVAEAV 215 (260)
T ss_pred ---CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhh------HhhccCCCCHHHHHHHH
Confidence 2368999999999887765321 3445555433211000 0000000 00111235679999999
Q ss_pred HHHHhcC
Q 022112 210 IEMAKRN 216 (302)
Q Consensus 210 ~~~~~~~ 216 (302)
+.+++..
T Consensus 216 ~~~~~~~ 222 (260)
T PRK08267 216 WAAVQHP 222 (260)
T ss_pred HHHHhCC
Confidence 9998754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=120.65 Aligned_cols=194 Identities=12% Similarity=0.021 Sum_probs=124.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
+++||||||+|+||.+++++|+++|++|++ +.+|+++.+++.+.++.. ++|+|||+
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ 86 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNN 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 468999999999999999999999999876 567888888887777643 68999999
Q ss_pred cccCCC---CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGR---PNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGC-IFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 70 a~~~~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+.... +............+++|+.++..+++.+.. . ..++|++||.. +++..
T Consensus 87 ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~------------------ 148 (255)
T PRK06057 87 AGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA------------------ 148 (255)
T ss_pred CCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC------------------
Confidence 986520 001123345678899999998887776642 2 23688888753 44421
Q ss_pred CCCCchhhhHHHHHHHHHhh----cC----ceEEeeecccCCCCCCchh-hHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNF----EN----VCTLRVRMPISSDLSNPRN-FITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~----~~----~~~lR~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
+....|+.+|...+.+.+.+ .. ...++|+++..+....... -.....+..... ....+..++|+++++..
T Consensus 149 ~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 227 (255)
T PRK06057 149 TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLVHV-PMGRFAEPEEIAAAVAF 227 (255)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHhcC-CCCCCcCHHHHHHHHHH
Confidence 12267999998776665542 22 2677888876653211000 000000000000 12357889999999888
Q ss_pred HHhcC----CCCeEEecCC
Q 022112 212 MAKRN----LTGIWNFTNP 226 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~ 226 (302)
++... .+..+.+.++
T Consensus 228 l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 228 LASDDASFITASTFLVDGG 246 (255)
T ss_pred HhCccccCccCcEEEECCC
Confidence 77542 2335555543
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=119.53 Aligned_cols=172 Identities=17% Similarity=0.146 Sum_probs=118.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc--CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV--KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~--~~d~V 66 (302)
||+++||||+|+||.++++.|+++|++|++ +.+|+++.+++.+.+++. ++|.|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 568999999999999999999999998776 467888888887777643 57999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+++..... .......++...+++|+.++.++++++... + .++|++||.....+ .
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~------------------~ 142 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRG------------------R 142 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCC------------------C
Confidence 9999865211 112234456678999999999999887652 3 35888888532111 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+.+.+... ..++|+.+..+. .... .. ....+...+|+++.++..
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~-------~~~~----~~--~~~~~~~~~~~a~~i~~~ 209 (243)
T PRK07102 143 ASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPM-------TAGL----KL--PGPLTAQPEEVAKDIFRA 209 (243)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChh-------hhcc----CC--CccccCCHHHHHHHHHHH
Confidence 12367999999998888765321 445555554431 1110 00 011245689999999999
Q ss_pred HhcC
Q 022112 213 AKRN 216 (302)
Q Consensus 213 ~~~~ 216 (302)
++++
T Consensus 210 ~~~~ 213 (243)
T PRK07102 210 IEKG 213 (243)
T ss_pred HhCC
Confidence 8864
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=120.00 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=122.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+.+++. ++
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTI 87 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 4579999999999999999999999998776 456788888877766643 68
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-------------CCeEEEEcCCccccCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK-------------GLILINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------------~~~~v~~SS~~vy~~~~~~~~~~ 129 (302)
|+|||+|+..... ..+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 88 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 160 (258)
T PRK06949 88 DILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL------- 160 (258)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC-------
Confidence 9999999965211 112234567788999999999998877532 1358888886554311
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc-cccccccCCcc
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY-EKVVNIPNSMT 200 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~i 200 (302)
+....|+.+|...+.+++.+... .+++|++++++.... .+....... .... ....+.
T Consensus 161 -----------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~--~~~~~~~~~~~~~~-~~~~~~ 226 (258)
T PRK06949 161 -----------PQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHH--HWETEQGQKLVSML-PRKRVG 226 (258)
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchh--ccChHHHHHHHhcC-CCCCCc
Confidence 22368999999999988765332 567888877653210 011110000 0001 122355
Q ss_pred cHhhHHHHHHHHHhc
Q 022112 201 ILDELLPISIEMAKR 215 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~ 215 (302)
..+|+++++..++..
T Consensus 227 ~p~~~~~~~~~l~~~ 241 (258)
T PRK06949 227 KPEDLDGLLLLLAAD 241 (258)
T ss_pred CHHHHHHHHHHHhCh
Confidence 679999999998864
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-14 Score=119.10 Aligned_cols=177 Identities=16% Similarity=0.117 Sum_probs=120.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+.+++. +
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999987765 467999998887776643 6
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+||....+.. ..........+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 147 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL-------------- 147 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC--------------
Confidence 8999999997531111 122345667889999999988888753 23 358888886533211
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+. +...|+.+|...+.+.+.+... ..++|+++..+ +.... .. ....+..+|.|++
T Consensus 148 --~~-~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~-------~~~~~-~~------~~~~~~~~~~a~~ 210 (248)
T PRK08251 148 --PG-VKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSE-------MNAKA-KS------TPFMVDTETGVKA 210 (248)
T ss_pred --CC-CcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcch-------hhhcc-cc------CCccCCHHHHHHH
Confidence 11 2368999999998887654321 34555554432 11111 00 1124678999999
Q ss_pred HHHHHhcCCCCeE
Q 022112 209 SIEMAKRNLTGIW 221 (302)
Q Consensus 209 ~~~~~~~~~~~~~ 221 (302)
++.++++....+|
T Consensus 211 i~~~~~~~~~~~~ 223 (248)
T PRK08251 211 LVKAIEKEPGRAA 223 (248)
T ss_pred HHHHHhcCCCeEE
Confidence 9999987655554
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=121.64 Aligned_cols=199 Identities=18% Similarity=0.163 Sum_probs=142.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|+|||||||||+|+++++.|+++|++|++ ..+|+.++..+...+. +.|.++++.+...
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~a~~--G~~~~~~i~~~~~--- 75 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAK--GVDGVLLISGLLD--- 75 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhcCCcEEEEeccCCHhHHHHHhc--cccEEEEEecccc---
Confidence 58999999999999999999999999988 5677888999999988 8999999988551
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
... ...........+..+++. .+++ ++++|. ++... ..+ ..|..+|...|+.
T Consensus 76 -----~~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~---~~~~~----------------~~~-~~~~~~~~~~e~~ 128 (275)
T COG0702 76 -----GSD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSV---LGADA----------------ASP-SALARAKAAVEAA 128 (275)
T ss_pred -----ccc-chhHHHHHHHHHHHHHhc-CCceEEEEecc---CCCCC----------------CCc-cHHHHHHHHHHHH
Confidence 111 122233333344444444 2233 666665 33110 123 7899999999999
Q ss_pred HHhh-cCceEEeeecccCCCCCCchhhHHHHhccc-ccc---cccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCcc
Q 022112 157 LKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYE-KVV---NIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVV 229 (302)
Q Consensus 157 ~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~-~~~---~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~ 229 (302)
+.+. ..++++|+...|.... ..+........ +.. ....+++..+|++.++...+..+ ..++|.+++++..
T Consensus 129 l~~sg~~~t~lr~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~~~~~~~~~l~g~~~~ 205 (275)
T COG0702 129 LRSSGIPYTTLRRAAFYLGAG---AAFIEAAEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAPATAGRTYELAGPEAL 205 (275)
T ss_pred HHhcCCCeEEEecCeeeeccc---hhHHHHHHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCCcccCcEEEccCCcee
Confidence 9765 6668888666665422 22233333322 221 12457899999999999999865 4579999999999
Q ss_pred CHHHHHHHHHhhcCCCCcc
Q 022112 230 SHNEILEMYRQYIDPNFTW 248 (302)
Q Consensus 230 s~~e~~~~~~~~~g~~~~~ 248 (302)
+..+++..+.+..|++...
T Consensus 206 ~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 206 TLAELASGLDYTIGRPVGL 224 (275)
T ss_pred cHHHHHHHHHHHhCCccee
Confidence 9999999999999998664
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=125.69 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=108.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++++||||+|+||.++++.|+++|++|++ +.+|+++.+++.++++.. ++|
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD 85 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPLD 85 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCcc
Confidence 458999999999999999999999998876 357899999888777642 599
Q ss_pred EEEEccccCCCC--CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C---CeEEEEcCCccccCCC--C--CCC--CC
Q 022112 65 HVFNAAGVTGRP--NVDWCESHKVETIRTNVVGTLTLADVCRDK----G---LILINYATGCIFEYDS--G--HPL--GS 129 (302)
Q Consensus 65 ~Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~v~~SS~~vy~~~~--~--~~~--~~ 129 (302)
+|||+||..... ........++..+++|+.++.++++++... + .++|++||...+.... . .+. +-
T Consensus 86 ~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~~~~~ 165 (322)
T PRK07453 86 ALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADL 165 (322)
T ss_pred EEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCCccch
Confidence 999999965210 112344577889999999999998877642 2 3799999876543110 0 000 00
Q ss_pred C----------CC--CCCCCCCCCCCCchhhhHHHHHHHHHhhcC---------ceEEeeecccCCC
Q 022112 130 G----------IG--FKEEDTPNFVGSFYSKTKAMVEELLKNFEN---------VCTLRVRMPISSD 175 (302)
Q Consensus 130 ~----------~~--~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~---------~~~lR~~~v~g~~ 175 (302)
+ .+ +.+..+.. +...|+.||.+.+.+.+.+.+ ...+||+++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 166 GDLSGFEAGFKAPISMADGKKFK-PGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred hhhhcchhcccccccccCccCCC-ccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0 00 01112223 337899999987665544321 1567888887644
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=120.84 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=128.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc-EEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID-FTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~-V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.++++||||+|+||+.+++.|.++|++ |++ +.+|+++++++.++++.. ++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 85 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGRL 85 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999998 665 456888888877776543 68
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+|+....+. .+.........+++|+.++.++++++.+. + .++|++||...++..
T Consensus 86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------------- 151 (260)
T PRK06198 86 DALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-------------- 151 (260)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--------------
Confidence 99999999652111 11233455678999999999998887542 2 248888887766522
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--------chhhHHHHhcccccccccCCcc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--------PRNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~i 200 (302)
+....|+.+|...|.+++.+... ..++|++++.+.... ...++..... ......++
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 223 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAA----TQPFGRLL 223 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhc----cCCccCCc
Confidence 12368999999999988765322 456666666542100 0111111111 01123467
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCC
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
+.+|++++++.++... .+.++.+.++
T Consensus 224 ~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 224 DPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred CHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 8999999999987542 2346666664
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-14 Score=118.54 Aligned_cols=192 Identities=18% Similarity=0.064 Sum_probs=123.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|.||.+++++|+++|++|++ +.+|+++.+++.+++++. ++|
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGLD 85 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 358999999999999999999999998876 457899988877776643 789
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+|+... .+......++....+++|+.++..+.+++ ++.+ .++|++||...+..
T Consensus 86 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~---------------- 149 (254)
T PRK07478 86 IAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA---------------- 149 (254)
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc----------------
Confidence 9999999642 11122234567788999998777765544 3333 35888988654421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+.+....|+.+|...+.+++.+... ..++|+++-.+.... ...+ ........ ....+...+|++
T Consensus 150 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~va 224 (254)
T PRK07478 150 -GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEA-LAFVAGLH---ALKRMAQPEEIA 224 (254)
T ss_pred -CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHH-HHHHHhcC---CCCCCcCHHHHH
Confidence 1123478999999999988776433 344555543321000 0001 01111100 112355789999
Q ss_pred HHHHHHHhcC---CCC-eEEecCC
Q 022112 207 PISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
++++.++... ..| ++.+.++
T Consensus 225 ~~~~~l~s~~~~~~~G~~~~~dgg 248 (254)
T PRK07478 225 QAALFLASDAASFVTGTALLVDGG 248 (254)
T ss_pred HHHHHHcCchhcCCCCCeEEeCCc
Confidence 9999988653 223 5555554
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.7e-14 Score=118.49 Aligned_cols=178 Identities=16% Similarity=0.113 Sum_probs=116.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++|||||+|+||.++++.|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 4899999999999999999999998876 235777888777666532 68
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHH----HHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVV----GTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~----~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+...... .+....+....+++|+. ++..+++++++.+. ++|++||...+...
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~--------------- 145 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAE--------------- 145 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCC---------------
Confidence 99999999763111 11223355677888888 77788888877654 58888887665422
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc----------eEEeeecccCCCCCCc------hhhHHHHhcccccccccCCccc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV----------CTLRVRMPISSDLSNP------RNFITKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~----------~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~i~ 201 (302)
+....|+.+|...+.+++.+... ..++|+++.++..... ......+.++. ....+.+
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 218 (251)
T PRK07069 146 ---PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGV----PLGRLGE 218 (251)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccC----CCCCCcC
Confidence 12368999999999888765321 3445555444321000 00111111111 1234568
Q ss_pred HhhHHHHHHHHHhc
Q 022112 202 LDELLPISIEMAKR 215 (302)
Q Consensus 202 v~D~a~~~~~~~~~ 215 (302)
.+|++++++.++..
T Consensus 219 ~~~va~~~~~l~~~ 232 (251)
T PRK07069 219 PDDVAHAVLYLASD 232 (251)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999987764
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-14 Score=118.97 Aligned_cols=182 Identities=10% Similarity=0.061 Sum_probs=124.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++++||||+|+||+.++++|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 89 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL 89 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999988766 567888888877766532 67
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+++..... ..+....+....+.+|+.++.++++++.+ .+ .++|++||...+..
T Consensus 90 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~---------------- 153 (256)
T PRK06124 90 DILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVA---------------- 153 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccC----------------
Confidence 9999999965211 11223446678899999999999977754 33 35888888653321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
.+....|+.+|...+.+++.+... ..++|+.+..+.... ...+...+.... ....+++.+|++
T Consensus 154 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a 227 (256)
T PRK06124 154 --RAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT----PLGRWGRPEEIA 227 (256)
T ss_pred --CCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC----CCCCCCCHHHHH
Confidence 112368999999999887664322 556777766542110 111212221111 123478899999
Q ss_pred HHHHHHHhcC
Q 022112 207 PISIEMAKRN 216 (302)
Q Consensus 207 ~~~~~~~~~~ 216 (302)
.+++.++...
T Consensus 228 ~~~~~l~~~~ 237 (256)
T PRK06124 228 GAAVFLASPA 237 (256)
T ss_pred HHHHHHcCcc
Confidence 9999998764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.1e-14 Score=117.28 Aligned_cols=194 Identities=16% Similarity=0.079 Sum_probs=125.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|.||.++++.|+++|++|++ +.+|+++++++.+++++. ++|
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGID 88 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999875 468899998887776542 799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+|+...... ......+....+++|+.++..+++++... + .++|++||....-..
T Consensus 89 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------------- 153 (253)
T PRK05867 89 IAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--------------- 153 (253)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---------------
Confidence 9999999752111 11233466778899999999998887532 2 347777775321100
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.+ +....|+.+|...+.+++.+... ..+|+ +.+-.+...........+.... ....+...+|+|+++
T Consensus 154 ~~-~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~~~~~~~~~~----~~~r~~~p~~va~~~ 228 (253)
T PRK05867 154 VP-QQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTEYQPLWEPKI----PLGRLGRPEELAGLY 228 (253)
T ss_pred CC-CCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchHHHHHHHhcC----CCCCCcCHHHHHHHH
Confidence 01 11268999999999998776433 23444 4432221100011111111111 123356789999999
Q ss_pred HHHHhcC----CCCeEEecCCC
Q 022112 210 IEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~ 227 (302)
+.++... .+.++.+.++.
T Consensus 229 ~~L~s~~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 229 LYLASEASSYMTGSDIVIDGGY 250 (253)
T ss_pred HHHcCcccCCcCCCeEEECCCc
Confidence 9988642 23466666653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-14 Score=117.65 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=128.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||.+++++|+++|++|++ +.+|++|.+++.+.++.. ++|
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 88 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPID 88 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCCC
Confidence 458999999999999999999999998766 457888988887776532 589
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+.... +.......++...+++|+.++..+++++.+. + .++|++||.....+
T Consensus 89 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~----------------- 151 (254)
T PRK08085 89 VLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELG----------------- 151 (254)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccC-----------------
Confidence 99999996521 1112234567788999999998888887653 2 46888988643211
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+....|+.+|...+.++++++.. ..++|+++..+.... ...+...+.... ....+...+|++.
T Consensus 152 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~va~ 226 (254)
T PRK08085 152 -RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRT----PAARWGDPQELIG 226 (254)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 123368999999999998776432 556777665542211 111222222111 1234667899999
Q ss_pred HHHHHHhcC---CCC-eEEecCC
Q 022112 208 ISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+++.++... ..| +..+.++
T Consensus 227 ~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 227 AAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred HHHHHhCccccCCcCCEEEECCC
Confidence 999888752 233 5555554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-14 Score=118.24 Aligned_cols=193 Identities=13% Similarity=0.132 Sum_probs=126.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|.||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|++|
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999999998776 568899998887777643 789999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
|+|+....+.......++...+++|+.++..+++++... +.++|++||...+.+. +..
T Consensus 86 ~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------------~~~ 147 (261)
T PRK08265 86 NLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------------TGR 147 (261)
T ss_pred ECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------------CCC
Confidence 999965211223345577788999999999888877642 3468888886543211 123
Q ss_pred CchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-----c---ccccCCcccHhhHHHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-----V---VNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----~---~~~~~~~i~v~D~a~~~~~~ 212 (302)
..|+.+|...+.+.+.+... ..+|+..+..+.. ...+...+..+.. . .....-+...+|+|+++..+
T Consensus 148 ~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~--~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~l 225 (261)
T PRK08265 148 WLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWT--WSRVMDELSGGDRAKADRVAAPFHLLGRVGDPEEVAQVVAFL 225 (261)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCc--cChhhhhhcccchhHHHHhhcccCCCCCccCHHHHHHHHHHH
Confidence 68999999999988765432 2344444322111 0111111111100 0 00112245679999999998
Q ss_pred HhcC---CC-CeEEecCC
Q 022112 213 AKRN---LT-GIWNFTNP 226 (302)
Q Consensus 213 ~~~~---~~-~~~~~~~~ 226 (302)
+... .. ..+.+.++
T Consensus 226 ~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 226 CSDAASFVTGADYAVDGG 243 (261)
T ss_pred cCccccCccCcEEEECCC
Confidence 8752 22 36677665
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-14 Score=117.67 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=122.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|.||++++++|+++|++|++ +.+|++|.+++.+++++. ++|++
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~l 89 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDIL 89 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 468999999999999999999999998875 468899988888777643 78999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+||..... ..+....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 90 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------- 152 (253)
T PRK08993 90 VNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG----------------- 152 (253)
T ss_pred EECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC-----------------
Confidence 9999975211 112234678889999999999998887542 2358999987665422
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..++|+++.-+.... .......+.. .. . ..-+...+|+|.+
T Consensus 153 -~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~--~~-p-~~r~~~p~eva~~ 227 (253)
T PRK08993 153 -IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILD--RI-P-AGRWGLPSDLMGP 227 (253)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHh--cC-C-CCCCcCHHHHHHH
Confidence 12358999999999888766432 334444443221100 0000111111 01 1 1235668999999
Q ss_pred HHHHHhc
Q 022112 209 SIEMAKR 215 (302)
Q Consensus 209 ~~~~~~~ 215 (302)
++.++..
T Consensus 228 ~~~l~s~ 234 (253)
T PRK08993 228 VVFLASS 234 (253)
T ss_pred HHHHhCc
Confidence 9998875
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-14 Score=122.24 Aligned_cols=191 Identities=10% Similarity=0.009 Sum_probs=123.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++++||||+|+||+.+++.|+++|++|++ +.+|++|.++++++++.. ++|
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD 87 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPID 87 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCC
Confidence 358999999999999999999999999876 467999999888776542 689
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHH----HHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADV----CRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+|+....+ ..+....+....+++|+.++.++.+. +++.+ .++|++||...+...
T Consensus 88 ~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~---------------- 151 (334)
T PRK07109 88 TWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI---------------- 151 (334)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC----------------
Confidence 999999965211 11223445667888888777665544 44443 359999997766422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhccccc-ccccCCcccHhhHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKV-VNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+.+.+... ..+|+..+..+.... .+.......... ......+...+|+|++++.+
T Consensus 152 --~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T--~~~~~~~~~~~~~~~~~~~~~~pe~vA~~i~~~ 227 (334)
T PRK07109 152 --PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNT--PQFDWARSRLPVEPQPVPPIYQPEVVADAILYA 227 (334)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccC--chhhhhhhhccccccCCCCCCCHHHHHHHHHHH
Confidence 23368999999988877654221 234544444322111 111111110000 01122356789999999999
Q ss_pred HhcCCCCeEEecC
Q 022112 213 AKRNLTGIWNFTN 225 (302)
Q Consensus 213 ~~~~~~~~~~~~~ 225 (302)
++++ ...+.+++
T Consensus 228 ~~~~-~~~~~vg~ 239 (334)
T PRK07109 228 AEHP-RRELWVGG 239 (334)
T ss_pred HhCC-CcEEEeCc
Confidence 9875 34555654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=118.16 Aligned_cols=190 Identities=14% Similarity=0.079 Sum_probs=127.2
Q ss_pred EEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-CCCEEEEccccC
Q 022112 18 LIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-KPTHVFNAAGVT 73 (302)
Q Consensus 18 lItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~ 73 (302)
|||||+|+||+.+++.|+++|++|++ +.+|+++.+++.+++... ++|++||+++..
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~ 80 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT 80 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 69999999999999999999988765 467889999988888754 479999999975
Q ss_pred CCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 74 GRP-NVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 74 ~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
... ..+....+....+++|+.++.++.++....+ .++|++||...+... ++...|+.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~------------------~~~~~Y~~sK~ 142 (230)
T PRK07041 81 PGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPS------------------ASGVLQGAINA 142 (230)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCC------------------CcchHHHHHHH
Confidence 311 1112345678899999999999999665443 358888887665422 23478999999
Q ss_pred HHHHHHHhhcCc-eEEeeecccCCCCCCc----------hhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC-C-C
Q 022112 152 MVEELLKNFENV-CTLRVRMPISSDLSNP----------RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-L-T 218 (302)
Q Consensus 152 ~~E~~~~~~~~~-~~lR~~~v~g~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-~-~ 218 (302)
..+.+++++... ..+|+..+.......+ ..+........ . ...+...+|+|++++.+++.. . +
T Consensus 143 a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~dva~~~~~l~~~~~~~G 218 (230)
T PRK07041 143 ALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERL---P-ARRVGQPEDVANAILFLAANGFTTG 218 (230)
T ss_pred HHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcC---C-CCCCcCHHHHHHHHHHHhcCCCcCC
Confidence 999998776432 2244433322110000 00111111100 0 112456899999999988764 2 4
Q ss_pred CeEEecCCCcc
Q 022112 219 GIWNFTNPGVV 229 (302)
Q Consensus 219 ~~~~~~~~~~~ 229 (302)
..|++.++.++
T Consensus 219 ~~~~v~gg~~~ 229 (230)
T PRK07041 219 STVLVDGGHAI 229 (230)
T ss_pred cEEEeCCCeec
Confidence 58888887553
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-13 Score=116.66 Aligned_cols=192 Identities=16% Similarity=0.115 Sum_probs=124.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++.+. ++|+
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~ 85 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDI 85 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999988776 568899988887776643 7899
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+|+...... ......+....+++|+.++.++++++.+. ..++|++||..... .+
T Consensus 86 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-----------------~~ 148 (263)
T PRK08226 86 LVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDM-----------------VA 148 (263)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcc-----------------cC
Confidence 999999752111 12234456678999999999999887642 23688888853210 01
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---------chhhHHHHhcccccccccCCcccH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---------PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
.+....|+.+|...+.+++.+... ..++|+.+..+-... ...++..+....+ ...+...
T Consensus 149 ~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~ 224 (263)
T PRK08226 149 DPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIP----LRRLADP 224 (263)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCC----CCCCCCH
Confidence 123368999999999888765432 345555554431100 0011222211111 1235678
Q ss_pred hhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 203 DELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 203 ~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+|+|+++..++... ..| ++.+.++
T Consensus 225 ~~va~~~~~l~~~~~~~~~g~~i~~dgg 252 (263)
T PRK08226 225 LEVGELAAFLASDESSYLTGTQNVIDGG 252 (263)
T ss_pred HHHHHHHHHHcCchhcCCcCceEeECCC
Confidence 99999998877532 233 5555554
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=125.19 Aligned_cols=193 Identities=9% Similarity=-0.027 Sum_probs=121.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhh-----cCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAA-----VKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~-----~~~d~Vi~ 68 (302)
+++||||||+|+||.+++++|+++|++|++ +.+|++|.+++.+++.+ .++|+|||
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~ 105 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILIN 105 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999999999999999876 56899999888777753 26899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHH----HHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADV----CRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
+||....+ ........+..+.+|+.++..+.+. +++.+ .++|++||........ +. +. ..... +.++.
T Consensus 106 nAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~--~~--~~-~~~~~-~~~~~ 178 (315)
T PRK06196 106 NAGVMACP-ETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPI--RW--DD-PHFTR-GYDKW 178 (315)
T ss_pred CCCCCCCC-CccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCC--Cc--cc-cCccC-CCChH
Confidence 99975311 1223345677889999997666554 44443 5799998865322110 00 00 01111 12233
Q ss_pred CchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchh--hH--HHHhcccccccccCCcccHhhHHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRN--FI--TKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~--~~--~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
..|+.+|...+.+.+.+.. ...++|+++.++-...... .. ..+...... ....+...+|.|..++.
T Consensus 179 ~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 256 (315)
T PRK06196 179 LAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNP--IDPGFKTPAQGAATQVW 256 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhh--hhhhcCCHhHHHHHHHH
Confidence 6799999999988755422 1667888877653211000 00 000000000 01123467999999998
Q ss_pred HHhc
Q 022112 212 MAKR 215 (302)
Q Consensus 212 ~~~~ 215 (302)
++..
T Consensus 257 l~~~ 260 (315)
T PRK06196 257 AATS 260 (315)
T ss_pred HhcC
Confidence 8854
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-14 Score=115.82 Aligned_cols=184 Identities=14% Similarity=0.062 Sum_probs=122.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++++||||+|+||++++++|+++|++|++ +.+|+.+.+++.+.++.. ++|+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 85 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDV 85 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 368999999999999999999999998776 346888888887777643 7999
Q ss_pred EEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 66 Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|||+++....+.. .....+....+++|+.++.++++++.+. + .++|++||...+...
T Consensus 86 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------------ 147 (237)
T PRK07326 86 LIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFF------------------ 147 (237)
T ss_pred EEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCC------------------
Confidence 9999986521111 1234456688999999999988887642 2 248888886443211
Q ss_pred CCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+.+.+.. ...+||+++..+.. ... . .......+..+|++++++.+
T Consensus 148 ~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~-------~~~----~-~~~~~~~~~~~d~a~~~~~~ 215 (237)
T PRK07326 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFN-------GHT----P-SEKDAWKIQPEDIAQLVLDL 215 (237)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccc-------ccc----c-chhhhccCCHHHHHHHHHHH
Confidence 1236799999988887766421 25566666544211 000 0 00001136789999999999
Q ss_pred HhcCCC---CeEEecCCC
Q 022112 213 AKRNLT---GIWNFTNPG 227 (302)
Q Consensus 213 ~~~~~~---~~~~~~~~~ 227 (302)
+..+.. ..+.+..+.
T Consensus 216 l~~~~~~~~~~~~~~~~~ 233 (237)
T PRK07326 216 LKMPPRTLPSKIEVRPSR 233 (237)
T ss_pred HhCCccccccceEEecCC
Confidence 986532 345554433
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=117.46 Aligned_cols=193 Identities=15% Similarity=0.131 Sum_probs=123.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||.++++.|+++|++|++ +.+|+++.+++..++++. ++|+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~ 85 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRVDV 85 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCcCE
Confidence 468999999999999999999999998875 567888888877666543 5899
Q ss_pred EEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCR----DKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+|+.... +............+++|+.++..+++++. +.+.++|++||...+...
T Consensus 86 li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------- 148 (272)
T PRK08589 86 LFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAAD----------------- 148 (272)
T ss_pred EEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcCCC-----------------
Confidence 9999997521 11112334567788899998876666654 345579999886544311
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc------------cccccccCCcccHhh
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY------------EKVVNIPNSMTILDE 204 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~------------~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+++.++.. ..+|+..+..+... ..+...+... ........-+...+|
T Consensus 149 -~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~--T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (272)
T PRK08589 149 -LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIE--TPLVDKLTGTSEDEAGKTFRENQKWMTPLGRLGKPEE 225 (272)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccc--CchhhhhcccchhhHHHHHhhhhhccCCCCCCcCHHH
Confidence 12368999999999998776432 33454443322111 1111111000 000001123567899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
++++++.++... ..| .+.+.++
T Consensus 226 va~~~~~l~s~~~~~~~G~~i~vdgg 251 (272)
T PRK08589 226 VAKLVVFLASDDSSFITGETIRIDGG 251 (272)
T ss_pred HHHHHHHHcCchhcCcCCCEEEECCC
Confidence 999999988642 233 5666655
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-14 Score=116.08 Aligned_cols=184 Identities=16% Similarity=0.153 Sum_probs=129.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhh-----cC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAA-----VK 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~-----~~ 62 (302)
++++++|||||+.||..+++.|.++|++|+. +.+|+++++++..+..+ ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCc
Confidence 4568999999999999999999999999877 78999999887766543 27
Q ss_pred CCEEEEccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++|++||... .+..+....+....+++|+.+...+-.+... . .-.+|.++|...|-+
T Consensus 85 IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p--------------- 149 (265)
T COG0300 85 IDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIP--------------- 149 (265)
T ss_pred ccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCC---------------
Confidence 999999999874 1122334557778999999988777666543 2 236999999765542
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC---ceEEeeecccCCCCCCchhhHHHHhccccc--ccccCCcccHhhHHHHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN---VCTLRVRMPISSDLSNPRNFITKITRYEKV--VNIPNSMTILDELLPISIE 211 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~---~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~D~a~~~~~ 211 (302)
.|....|+.+|...-.+.++... ...+++..+..+. ....|.. . .+... .....-++..+|+|++.+.
T Consensus 150 ---~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~--~~T~f~~-~-~~~~~~~~~~~~~~~~~~~va~~~~~ 222 (265)
T COG0300 150 ---TPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGP--TRTEFFD-A-KGSDVYLLSPGELVLSPEDVAEAALK 222 (265)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCc--ccccccc-c-cccccccccchhhccCHHHHHHHHHH
Confidence 23457999999987776655432 2667776665431 2234544 1 11111 1124456789999999999
Q ss_pred HHhcCCC
Q 022112 212 MAKRNLT 218 (302)
Q Consensus 212 ~~~~~~~ 218 (302)
.+.+...
T Consensus 223 ~l~~~k~ 229 (265)
T COG0300 223 ALEKGKR 229 (265)
T ss_pred HHhcCCc
Confidence 9987544
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-14 Score=115.70 Aligned_cols=189 Identities=17% Similarity=0.117 Sum_probs=123.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-CCCEEEEccccCC--C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-KPTHVFNAAGVTG--R 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~--~ 75 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++++ +.++++.. ++|+|||+|+... .
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~--~~~~~~~~~~id~lv~~ag~~~~~~ 82 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDD--LEPLFDWVPSVDILCNTAGILDDYK 82 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHH--HHHHHHhhCCCCEEEECCCCCCCCC
Confidence 468999999999999999999999999876 34556555 34444432 7899999998541 1
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
+.......+....+++|+.++.++++++... ..++|++||...+.+. +....|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~Y~~sK 144 (235)
T PRK06550 83 PLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG------------------GGGAAYTASK 144 (235)
T ss_pred CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------------CCCcccHHHH
Confidence 1123345577889999999999999988642 2358888886543311 1236899999
Q ss_pred HHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---
Q 022112 151 AMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--- 216 (302)
Q Consensus 151 ~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--- 216 (302)
...+.+.+.++.. ..++|+++..+.... ...+...+.... ....+...+|+|.+++.++...
T Consensus 145 ~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~l~s~~~~~ 220 (235)
T PRK06550 145 HALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARET----PIKRWAEPEEVAELTLFLASGKADY 220 (235)
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccC----CcCCCCCHHHHHHHHHHHcChhhcc
Confidence 9988877654322 557777765542110 011111111111 1233567899999999988642
Q ss_pred -CCCeEEecCC
Q 022112 217 -LTGIWNFTNP 226 (302)
Q Consensus 217 -~~~~~~~~~~ 226 (302)
.+.++.+.++
T Consensus 221 ~~g~~~~~~gg 231 (235)
T PRK06550 221 MQGTIVPIDGG 231 (235)
T ss_pred CCCcEEEECCc
Confidence 2235666554
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=114.32 Aligned_cols=191 Identities=13% Similarity=0.026 Sum_probs=122.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~ 68 (302)
|++++|||||+|.||+++++.|+++|++|++ +.+|+++.+++...+++. ++|++||
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~ 80 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIH 80 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEE
Confidence 4568999999999999999999999999876 367888888877766543 5899999
Q ss_pred ccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C---CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G---LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 69 ~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|+..... .......+....+++|+.++..+.+.+... + .++|++||..... +.
T Consensus 81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~------------------~~ 142 (236)
T PRK06483 81 NASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK------------------GS 142 (236)
T ss_pred CCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc------------------CC
Confidence 99964211 111234567888999999988777666542 2 3588887753221 11
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+....|+.+|...+.+++.++.. ..+.|+++.-... .............+ ..+ +...+|+++++..++
T Consensus 143 ~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~-~~~~~~~~~~~~~~---~~~-~~~~~~va~~~~~l~ 217 (236)
T PRK06483 143 DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEG-DDAAYRQKALAKSL---LKI-EPGEEEIIDLVDYLL 217 (236)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCC-CCHHHHHHHhccCc---ccc-CCCHHHHHHHHHHHh
Confidence 23368999999999998775432 3344444321110 11111111111111 111 346799999999988
Q ss_pred hcC-C-CCeEEecCC
Q 022112 214 KRN-L-TGIWNFTNP 226 (302)
Q Consensus 214 ~~~-~-~~~~~~~~~ 226 (302)
... . +.++.+.++
T Consensus 218 ~~~~~~G~~i~vdgg 232 (236)
T PRK06483 218 TSCYVTGRSLPVDGG 232 (236)
T ss_pred cCCCcCCcEEEeCcc
Confidence 632 2 336666554
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=116.69 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=125.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.++++.. ++|
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id 86 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRLD 86 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 358999999999999999999999988776 468888888887776643 689
Q ss_pred EEEEccccCCCC--CcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP--NVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+....+ ......+++...+++|+.++..+++++. +.+ .++|++||...+.+.
T Consensus 87 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~--------------- 151 (253)
T PRK06172 87 YAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA--------------- 151 (253)
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC---------------
Confidence 999999964211 1222345677889999999977766543 233 358888887655422
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-c------ccccCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-V------VNIPNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+... ..+|+..+..+.. ...+...+..... . .....-+...+|++.
T Consensus 152 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ia~ 226 (253)
T PRK06172 152 ---PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVI--DTDMFRRAYEADPRKAEFAAAMHPVGRIGKVEEVAS 226 (253)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCc--cChhhhhhcccChHHHHHHhccCCCCCccCHHHHHH
Confidence 13378999999999988776432 2344433322111 1111111111000 0 001123457899999
Q ss_pred HHHHHHhcC---CCC-eEEecCCC
Q 022112 208 ISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
.+++++... ..| .+++.++.
T Consensus 227 ~~~~l~~~~~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 227 AVLYLCSDGASFTTGHALMVDGGA 250 (253)
T ss_pred HHHHHhCccccCcCCcEEEECCCc
Confidence 999988652 233 66666653
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-14 Score=117.32 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=126.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|.||+.++++|+++|++|++ +.+|+++.+++.+++++. ++|++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~l 87 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDIL 87 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999999999999999875 568999999888777643 68999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+||....+. ......++...+++|+.++..+.+++.+ . +.++|++||...+.+.
T Consensus 88 v~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------------- 150 (251)
T PRK12481 88 INNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG----------------- 150 (251)
T ss_pred EECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC-----------------
Confidence 99999753111 1223457788899999998888877653 2 2469999987655422
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--h------hhHHHHhcccccccccCCcccHhhHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--R------NFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~------~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..+....+ . .....+... .+ ...+...+|+|++
T Consensus 151 -~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~--~p--~~~~~~peeva~~ 225 (251)
T PRK12481 151 -IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILER--IP--ASRWGTPDDLAGP 225 (251)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhc--CC--CCCCcCHHHHHHH
Confidence 12358999999999988765432 3444444322211000 0 000111110 11 1235678999999
Q ss_pred HHHHHhcC---CCC-eEEecCC
Q 022112 209 SIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~---~~~-~~~~~~~ 226 (302)
+..++... ..| .+.+.++
T Consensus 226 ~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 226 AIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred HHHHhCccccCcCCceEEECCC
Confidence 99988642 223 5555543
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=116.62 Aligned_cols=181 Identities=15% Similarity=0.058 Sum_probs=118.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++||||+|+||.+++++|+++|++|++ +.+|++|++++.+++... .+|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 36999999999999999999999988765 467899998887776543 6899
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+|+..... .......+....+++|+.++..+++++.. .+ .++|++||.....+.
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------- 144 (254)
T TIGR02415 81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN---------------- 144 (254)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC----------------
Confidence 99999875211 11233456678899999998877776653 22 358888885432211
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc--cc-------c--ccccCCc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY--EK-------V--VNIPNSM 199 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~--~~-------~--~~~~~~~ 199 (302)
+....|+.+|...+.+++.+... ..++|+.+..+.. ..+....... .. . ......+
T Consensus 145 --~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
T TIGR02415 145 --PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMW---EEIDEETSEIAGKPIGEGFEEFSSEIALGRP 219 (254)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhh---hhhhhhhhhcccCchHHHHHHHHhhCCCCCC
Confidence 12478999999999988664322 4445554432210 1111100000 00 0 0012346
Q ss_pred ccHhhHHHHHHHHHhcC
Q 022112 200 TILDELLPISIEMAKRN 216 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~ 216 (302)
...+|+++++..+++..
T Consensus 220 ~~~~~~a~~~~~l~~~~ 236 (254)
T TIGR02415 220 SEPEDVAGLVSFLASED 236 (254)
T ss_pred CCHHHHHHHHHhhcccc
Confidence 78899999999998864
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=115.98 Aligned_cols=191 Identities=17% Similarity=0.096 Sum_probs=123.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||.+++++|+++|++|++ +.+|+++.+++..++++. ++|
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 87 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRLD 87 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999998876 456888888877666542 689
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+... .+.......+....+++|+.++..+++++.+ .+ .++|++||...+.+
T Consensus 88 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~---------------- 151 (252)
T PRK07035 88 ILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSP---------------- 151 (252)
T ss_pred EEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCC----------------
Confidence 9999998531 1112234456678899999999888877743 23 35888887543221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
.+....|+.+|...+.+++++... ..+.|+.+.-+... ....+........ ....+...+|+|
T Consensus 152 --~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~va 225 (252)
T PRK07035 152 --GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHI----PLRRHAEPSEMA 225 (252)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccC----CCCCcCCHHHHH
Confidence 123478999999999998876432 34445444221100 0011111111111 122355789999
Q ss_pred HHHHHHHhcC---CCC-eEEecCC
Q 022112 207 PISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
++++.++... ..| ++.+.++
T Consensus 226 ~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 226 GAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred HHHHHHhCccccCccCCEEEeCCC
Confidence 9999988653 233 5666543
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=118.83 Aligned_cols=193 Identities=12% Similarity=0.061 Sum_probs=126.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhh----cCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAA----VKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~----~~~ 63 (302)
+++++|||||+|+||+++++.|+++|.+|++ +.+|+++.+++.++++. .++
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i 90 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL 90 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999988765 45688888887776653 268
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------------CCeEEEEcCCccccCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------------GLILINYATGCIFEYDSGHPLGSG 130 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------------~~~~v~~SS~~vy~~~~~~~~~~~ 130 (302)
|+|||+||...... ......++...+++|+.++.++++++... ..++|++||...+...
T Consensus 91 D~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 162 (306)
T PRK07792 91 DIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP-------- 162 (306)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC--------
Confidence 99999999763111 11234567788999999999999886421 1368888886543211
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-cccccCCcccHhhHH
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-VVNIPNSMTILDELL 206 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~D~a 206 (302)
+....|+.+|...+.+++.+... ..+|+..+. |.. ...+...+..... .......++..+|++
T Consensus 163 ----------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~-Pg~--~t~~~~~~~~~~~~~~~~~~~~~~pe~va 229 (306)
T PRK07792 163 ----------VGQANYGAAKAGITALTLSAARALGRYGVRANAIC-PRA--RTAMTADVFGDAPDVEAGGIDPLSPEHVV 229 (306)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEC-CCC--CCchhhhhccccchhhhhccCCCCHHHHH
Confidence 12368999999999998776432 456765543 321 1112122111111 001123456789999
Q ss_pred HHHHHHHhcC---CC-CeEEecCC
Q 022112 207 PISIEMAKRN---LT-GIWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~---~~-~~~~~~~~ 226 (302)
.++..++... .. .+|.+.++
T Consensus 230 ~~v~~L~s~~~~~~tG~~~~v~gg 253 (306)
T PRK07792 230 PLVQFLASPAAAEVNGQVFIVYGP 253 (306)
T ss_pred HHHHHHcCccccCCCCCEEEEcCC
Confidence 9998877642 23 35666543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-13 Score=115.19 Aligned_cols=190 Identities=15% Similarity=0.099 Sum_probs=127.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++..++++ .++|
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 89 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVID 89 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999998876 56889999988887764 2589
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGC-IFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+||.... +.......+....+++|+.++..+++++.. . ..++|++||.. .++
T Consensus 90 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~----------------- 152 (265)
T PRK07097 90 ILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG----------------- 152 (265)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC-----------------
Confidence 99999997631 112234567788899999998887777654 2 34688888853 222
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---------chhhHHHHhcccccccccCCcc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---------PRNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~i 200 (302)
.+....|+.+|...+.+++.+... ..++|+.+..+.... ...+...+.... ....+.
T Consensus 153 --~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 226 (265)
T PRK07097 153 --RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKT----PAARWG 226 (265)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcC----CccCCc
Confidence 123378999999999988776432 556666665432100 001111111100 122356
Q ss_pred cHhhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 201 ILDELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
..+|+|..++.++... ..| .+.+.++
T Consensus 227 ~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 256 (265)
T PRK07097 227 DPEDLAGPAVFLASDASNFVNGHILYVDGG 256 (265)
T ss_pred CHHHHHHHHHHHhCcccCCCCCCEEEECCC
Confidence 7899999999988752 233 5555554
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=116.03 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=125.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|+++++++.+++++. ++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i 87 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGAL 87 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999988776 456888888877766642 57
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+....+ .......+....+++|+.++..+++++.. .+ .++|++||...+....
T Consensus 88 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------------- 153 (254)
T PRK06114 88 TLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNR-------------- 153 (254)
T ss_pred CEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCC--------------
Confidence 9999999975311 11123456778899999999887776543 32 3588888865332110
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhH---HHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFI---TKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~---~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
.+....|+.+|...+.+++.++.. ..++|+++..+.... ..+. ..+... .+ ..-+...+|++
T Consensus 154 --~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~-~~~~~~~~~~~~~--~p--~~r~~~~~dva 226 (254)
T PRK06114 154 --GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTR-PEMVHQTKLFEEQ--TP--MQRMAKVDEMV 226 (254)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccc-ccchHHHHHHHhc--CC--CCCCcCHHHHH
Confidence 111368999999999887765432 456666665432211 1111 111111 11 12345689999
Q ss_pred HHHHHHHhcC----CCCeEEecCC
Q 022112 207 PISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~ 226 (302)
.+++.++... .+.++.+.++
T Consensus 227 ~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 227 GPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred HHHHHHcCccccCcCCceEEECcC
Confidence 9999988642 2336666654
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=117.07 Aligned_cols=187 Identities=14% Similarity=0.105 Sum_probs=120.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~----~~d~V 66 (302)
++++|||||+|+||..++++|+++|++|++ +.+|++|.+++.++++.. .+|+|
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~l 84 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVL 84 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEE
Confidence 458999999999999999999999999876 367888888877665532 68999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+|+....+ .......+....+++|+.++.++++.+.+. + .++|++||...+.+ .
T Consensus 85 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------------~ 146 (263)
T PRK09072 85 INNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIG------------------Y 146 (263)
T ss_pred EECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcC------------------C
Confidence 9999975211 111234466778899999999999888642 2 35788877543211 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
+....|+.+|...+.+++.+... ..+|+..+..... . ..+...... .........+...+|+|++++.++++..
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~-~-t~~~~~~~~-~~~~~~~~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRAT-R-TAMNSEAVQ-ALNRALGNAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcc-c-ccchhhhcc-cccccccCCCCCHHHHHHHHHHHHhCCC
Confidence 12368999999988877665422 2344444322111 0 111111100 0000112235678999999999999765
Q ss_pred CCeE
Q 022112 218 TGIW 221 (302)
Q Consensus 218 ~~~~ 221 (302)
.++|
T Consensus 224 ~~~~ 227 (263)
T PRK09072 224 AERW 227 (263)
T ss_pred CEEe
Confidence 5443
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.5e-14 Score=118.18 Aligned_cols=182 Identities=11% Similarity=0.046 Sum_probs=121.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc--
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV-- 61 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~-- 61 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 86 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKAVE 86 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999988875 236888888887777643
Q ss_pred ---CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 ---KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 ---~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|+|||+||...... ......+....+++|+.++.++++++... +.++|++||.....
T Consensus 87 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~------------ 154 (273)
T PRK08278 87 RFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD------------ 154 (273)
T ss_pred HhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc------------
Confidence 7999999999753111 12234566788999999999999999643 34577777643111
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
....+....|+.+|...|.+++.+... ..+|+..+..... ....+...+..+.. ....+...+|+|+++
T Consensus 155 ----~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~-i~t~~~~~~~~~~~---~~~~~~~p~~va~~~ 226 (273)
T PRK08278 155 ----PKWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTT-IATAAVRNLLGGDE---AMRRSRTPEIMADAA 226 (273)
T ss_pred ----ccccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCc-cccHHHHhcccccc---cccccCCHHHHHHHH
Confidence 000123478999999999998876543 3456554433211 11222222221111 112356789999999
Q ss_pred HHHHhcC
Q 022112 210 IEMAKRN 216 (302)
Q Consensus 210 ~~~~~~~ 216 (302)
+.++...
T Consensus 227 ~~l~~~~ 233 (273)
T PRK08278 227 YEILSRP 233 (273)
T ss_pred HHHhcCc
Confidence 9988753
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=117.30 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=125.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||++++++|+++|++|++ +.+|+++.+++..++++. ++|+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~ 89 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDV 89 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 58999999999999999999999999877 357888988887777643 6899
Q ss_pred EEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 66 Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|||+|+.... +.......+....+++|+.++.++++++... +.++|++||...+.. .
T Consensus 90 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~------------------~ 151 (264)
T PRK07576 90 LVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP------------------M 151 (264)
T ss_pred EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC------------------C
Confidence 9999975321 1112234566788899999999999887642 346888888643321 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+++.+... ..++|+.+.+.... .+.......... .. ....+...+|+|+++
T Consensus 152 ~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~dva~~~ 228 (264)
T PRK07576 152 PMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQ--SV-PLKRNGTKQDIANAA 228 (264)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHh--cC-CCCCCCCHHHHHHHH
Confidence 23468999999999998765322 44555554432100 000000000000 01 123456789999999
Q ss_pred HHHHhcC---CCC-eEEecCC
Q 022112 210 IEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 210 ~~~~~~~---~~~-~~~~~~~ 226 (302)
+.++... ..| .+.+.++
T Consensus 229 ~~l~~~~~~~~~G~~~~~~gg 249 (264)
T PRK07576 229 LFLASDMASYITGVVLPVDGG 249 (264)
T ss_pred HHHcChhhcCccCCEEEECCC
Confidence 9998752 234 4555554
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-14 Score=131.94 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=126.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~ 493 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGG 493 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999998876 357888998888877754 7
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHh--CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDK--GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|+|||+||....+ .......++...+++|+.+...+++.+ ++. +.++|++||...+.+.
T Consensus 494 iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~------------- 560 (676)
T TIGR02632 494 VDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG------------- 560 (676)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC-------------
Confidence 99999999975311 111233456778888988877665444 333 3468999886533211
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeeccc-CCCCCCchhhHH-HHhc-ccc---------cccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPI-SSDLSNPRNFIT-KITR-YEK---------VVNI 195 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~-g~~~~~~~~~~~-~~~~-~~~---------~~~~ 195 (302)
+....|+.+|...+.+++.++.. ..++|+.++ +..... ..+.. .... +.. ....
T Consensus 561 -----~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~ 634 (676)
T TIGR02632 561 -----KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWD-GEWREERAAAYGIPADELEEHYAKRTL 634 (676)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCccccc-ccchhhhhhcccCChHHHHHHHHhcCC
Confidence 12378999999999998775432 334444443 221100 11100 0000 000 0011
Q ss_pred cCCcccHhhHHHHHHHHHhcC---C-CCeEEecCCCc
Q 022112 196 PNSMTILDELLPISIEMAKRN---L-TGIWNFTNPGV 228 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~~ 228 (302)
...+++.+|+|+++..++... . +.++++.++..
T Consensus 635 l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~~ 671 (676)
T TIGR02632 635 LKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGVP 671 (676)
T ss_pred cCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCch
Confidence 234678999999999887642 2 34788877643
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-14 Score=111.81 Aligned_cols=183 Identities=17% Similarity=0.097 Sum_probs=128.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhh----c-CCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAA----V-KPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~----~-~~d~Vi 67 (302)
|.++|||||+.||..+++.|.+.|+.|++ ...|++|.+++...++. + ++|++|
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLv 86 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILV 86 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEEE
Confidence 57999999999999999999999999887 56789999886665542 2 699999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|.||..-.. -......++...+++|+.|..+..++.-. . +..+|.+||.+-- .+.|
T Consensus 87 NNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~------------------~~y~ 148 (246)
T COG4221 87 NNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGR------------------YPYP 148 (246)
T ss_pred ecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccccc------------------ccCC
Confidence 999977321 11234468899999999999888887643 2 2369999986421 1122
Q ss_pred CCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccc---ccc--cccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYE---KVV--NIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~v~D~a~~~~~~~ 213 (302)
..+.|+.+|.....+.+.+... ..+|.+.++.... . ...+..+.... ... .....++..+|+|+++.+++
T Consensus 149 ~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v-~-~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~~V~~~~ 226 (246)
T COG4221 149 GGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLV-E-TTEFSTVRFEGDDERADKVYKGGTALTPEDIAEAVLFAA 226 (246)
T ss_pred CCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCcee-c-ceecccccCCchhhhHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3479999999999987766433 6788888765321 0 11111111110 011 12445788999999999999
Q ss_pred hcCC
Q 022112 214 KRNL 217 (302)
Q Consensus 214 ~~~~ 217 (302)
++|.
T Consensus 227 ~~P~ 230 (246)
T COG4221 227 TQPQ 230 (246)
T ss_pred hCCC
Confidence 9863
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=114.96 Aligned_cols=190 Identities=10% Similarity=0.049 Sum_probs=124.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|.||+++++.|+++|++|++ +.+|+++++++.+++++. ++|+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDA 81 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence 58999999999999999999999998766 456888888887766543 6899
Q ss_pred EEEccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+|+... .+..+....++...+++|+.++.++++++.+. + .++|++||...+..
T Consensus 82 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~----------------- 144 (252)
T PRK07677 82 LINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDA----------------- 144 (252)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccC-----------------
Confidence 999998542 11122344567889999999999999988432 2 35888887543221
Q ss_pred CCCCCCchhhhHHHHHHHHHhh----cCc-----eEEeeecccCCCCC----CchhhHHHHhcccccccccCCcccHhhH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNF----ENV-----CTLRVRMPISSDLS----NPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~----~~~-----~~lR~~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
.+....|+.+|...+.+.+.+ ... ..++|+.+...... ....+...+.... ...-+...+|+
T Consensus 145 -~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v 219 (252)
T PRK07677 145 -GPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSV----PLGRLGTPEEI 219 (252)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccC----CCCCCCCHHHH
Confidence 112368999999999887653 221 44556555432110 0111222222111 12235678999
Q ss_pred HHHHHHHHhcC---CC-CeEEecCC
Q 022112 206 LPISIEMAKRN---LT-GIWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~-~~~~~~~~ 226 (302)
++++..++... .. ..+.+.++
T Consensus 220 a~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 220 AGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred HHHHHHHcCccccccCCCEEEECCC
Confidence 99988887642 22 35666554
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-13 Score=114.62 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=127.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+++|||||+|.||+.+++.|.++|++|++ +.+|+++.+++...++.. +
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 88 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDG 88 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998876 356888888877666532 6
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+|+.... +.......++...+.+|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 89 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~-------------- 154 (257)
T PRK09242 89 LHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV-------------- 154 (257)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC--------------
Confidence 8999999996421 112234567788999999999999888753 23 358999887554421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+++.++.. ..++|+++..+.... ...+........+ ..-+...+|+
T Consensus 155 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 226 (257)
T PRK09242 155 ----RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTP----MRRVGEPEEV 226 (257)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCC----CCCCcCHHHH
Confidence 12368999999999988765322 556777665542211 1112222221111 1123457999
Q ss_pred HHHHHHHHhcC---C-CCeEEecCC
Q 022112 206 LPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
+.++..++... . +..+++.++
T Consensus 227 a~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 227 AAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred HHHHHHHhCcccccccCCEEEECCC
Confidence 99999888642 2 235566543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=118.64 Aligned_cols=187 Identities=11% Similarity=0.051 Sum_probs=124.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|.||..+++.|.++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 88 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGIDV 88 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999998875 238999998887776542 6899
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|||+||..... .......+....+++|+.++.++++++... +.++|++||...+...
T Consensus 89 vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 150 (296)
T PRK05872 89 VVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA------------------ 150 (296)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC------------------
Confidence 99999975211 111234466788999999999999887542 3468999986654421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--ch-hhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PR-NFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~-~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.+... ..+.|+++..+.... .. .....+.... ......++..+|+++++
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~va~~i 228 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARL--PWPLRRTTSVEKCAAAF 228 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhC--CCcccCCCCHHHHHHHH
Confidence 23368999999999988765422 334444443221100 00 1111111110 00123456799999999
Q ss_pred HHHHhcCCCCe
Q 022112 210 IEMAKRNLTGI 220 (302)
Q Consensus 210 ~~~~~~~~~~~ 220 (302)
+.++.+....+
T Consensus 229 ~~~~~~~~~~i 239 (296)
T PRK05872 229 VDGIERRARRV 239 (296)
T ss_pred HHHHhcCCCEE
Confidence 99998654433
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=114.88 Aligned_cols=189 Identities=13% Similarity=0.071 Sum_probs=123.3
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------------------eecCCCChhhHHH
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------------------GSGRLENRASLEA 56 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------------------~~~dl~~~~~~~~ 56 (302)
+++||||||+| .||..++++|+++|++|++ +.+|+++.+++..
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 84 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNR 84 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 45799999996 6999999999999977665 3557777777766
Q ss_pred HHhh-----cCCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCC
Q 022112 57 DIAA-----VKPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGH 125 (302)
Q Consensus 57 ~~~~-----~~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~ 125 (302)
.++. .++|+|||+|+.... +.......++...+.+|+.++..+++++... ..++|++||...+.+.
T Consensus 85 ~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~--- 161 (256)
T PRK12748 85 VFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM--- 161 (256)
T ss_pred HHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC---
Confidence 6653 268999999986521 1111233566788999999999999988643 2358899887655421
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccC
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPN 197 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+++.+... ..++|+.+..+.. .......+.... ...
T Consensus 162 ---------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~--~~~~~~~~~~~~----~~~ 220 (256)
T PRK12748 162 ---------------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWI--TEELKHHLVPKF----PQG 220 (256)
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCC--ChhHHHhhhccC----CCC
Confidence 12368999999999987765322 5566665443211 111111111110 112
Q ss_pred CcccHhhHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 198 SMTILDELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
.+...+|+++++..++... . +.++++.++
T Consensus 221 ~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 221 RVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 2345799999999888642 2 347777654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.9e-14 Score=119.50 Aligned_cols=178 Identities=17% Similarity=0.114 Sum_probs=117.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++||||+|+||.++++.|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~ 120 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDI 120 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 68999999999999999999999999876 457889988887777632 7899
Q ss_pred EEEccccCCCCCcch---hhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDW---CESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~---~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|||+||......... ...+....+++|+.++.++++++. +.+ .++|++||..++...
T Consensus 121 li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 185 (293)
T PRK05866 121 LINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEA--------------- 185 (293)
T ss_pred EEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC---------------
Confidence 999999763111111 124556788999999888877654 333 368888886554311
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.+....|+.+|...+.+++.+... ..+|...+..+.. ...+....... .....+..+++|+.++.+++
T Consensus 186 --~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v--~T~~~~~~~~~-----~~~~~~~pe~vA~~~~~~~~ 256 (293)
T PRK05866 186 --SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLV--ATPMIAPTKAY-----DGLPALTADEAAEWMVTAAR 256 (293)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcc--cCccccccccc-----cCCCCCCHHHHHHHHHHHHh
Confidence 122368999999999887665322 3444444432211 11111111000 01123578999999999998
Q ss_pred cC
Q 022112 215 RN 216 (302)
Q Consensus 215 ~~ 216 (302)
+.
T Consensus 257 ~~ 258 (293)
T PRK05866 257 TR 258 (293)
T ss_pred cC
Confidence 64
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-13 Score=115.14 Aligned_cols=191 Identities=18% Similarity=0.127 Sum_probs=123.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.++++||||+|+||+++++.|+++|++|++ +.+|+++.+++..++++. ++|
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id 89 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCD 89 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999998776 467888888877766542 789
Q ss_pred EEEEccccCCCCC----------------cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCC
Q 022112 65 HVFNAAGVTGRPN----------------VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDS 123 (302)
Q Consensus 65 ~Vi~~a~~~~~~~----------------~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~ 123 (302)
+|||+|+...... .+....++...+++|+.++..+++++. +.+ .++|++||...+...
T Consensus 90 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~- 168 (278)
T PRK08277 90 ILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTPL- 168 (278)
T ss_pred EEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCCC-
Confidence 9999999542110 112245677888999998886665543 332 469999987665421
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC----c----hhhHHHHh
Q 022112 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN----P----RNFITKIT 187 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~----~----~~~~~~~~ 187 (302)
+....|+.+|...+.+++.++.. ..++|+++..+.... . ......+.
T Consensus 169 -----------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 231 (278)
T PRK08277 169 -----------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKIL 231 (278)
T ss_pred -----------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHHh
Confidence 23368999999999988765332 445555554431100 0 00001111
Q ss_pred cccccccccCCcccHhhHHHHHHHHHhc-C---CCC-eEEecCC
Q 022112 188 RYEKVVNIPNSMTILDELLPISIEMAKR-N---LTG-IWNFTNP 226 (302)
Q Consensus 188 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~-~---~~~-~~~~~~~ 226 (302)
... ...-+...+|+|++++.++.. . ..| .+.+.++
T Consensus 232 ~~~----p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG 271 (278)
T PRK08277 232 AHT----PMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGG 271 (278)
T ss_pred ccC----CccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCC
Confidence 100 112355789999999998865 2 233 5666554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=119.21 Aligned_cols=189 Identities=14% Similarity=0.088 Sum_probs=123.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d 64 (302)
++++|||||+|.||+++++.|+++|++|++ +.+|++|.+++.++++. .++|
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 86 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRID 86 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 358999999999999999999999998876 46789999888877653 2789
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+|+....+. .+....+....+++|+.++.++.+++. +.+ ..+|++||...+..
T Consensus 87 ~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~----------------- 149 (330)
T PRK06139 87 VWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAA----------------- 149 (330)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCC-----------------
Confidence 9999999653111 112334567789999999988877764 322 35888888654431
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCCchhhHHHHh--cccccccccCCcccHhhHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSNPRNFITKIT--RYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~~~~~~~~~~--~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
.|....|+.+|...+.+.+++. +...+|+..++.+....+ +..... .+.. ......+...+|+|++++.+
T Consensus 150 -~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~--~~~~~~~~~~~~-~~~~~~~~~pe~vA~~il~~ 225 (330)
T PRK06139 150 -QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTP--GFRHGANYTGRR-LTPPPPVYDPRRVAKAVVRL 225 (330)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCc--cccccccccccc-ccCCCCCCCHHHHHHHHHHH
Confidence 1233689999998777665542 222455555543221111 111000 0000 01122356899999999999
Q ss_pred HhcCCCCeEEec
Q 022112 213 AKRNLTGIWNFT 224 (302)
Q Consensus 213 ~~~~~~~~~~~~ 224 (302)
++++.. .+.++
T Consensus 226 ~~~~~~-~~~~g 236 (330)
T PRK06139 226 ADRPRA-TTTVG 236 (330)
T ss_pred HhCCCC-EEEcC
Confidence 987544 34443
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=114.27 Aligned_cols=190 Identities=16% Similarity=0.129 Sum_probs=121.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+.+|||||+|+||+++++.|+++|++|++ +.+|+++++++.++++.. .+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 36999999999999999999999988765 456788887777666532 589
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+....+ .......++...+..|+.++..+++.+ ++.+. ++|++||.....+.
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~---------------- 144 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ---------------- 144 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC----------------
Confidence 999999865211 112234466778899999987765554 44443 58888885422211
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... ...++..+....+ ...+...+|+++++
T Consensus 145 --~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~ 218 (242)
T TIGR01829 145 --FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIP----VGRLGRPEEIAAAV 218 (242)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCC----CCCCcCHHHHHHHH
Confidence 12368999999888776554221 566777766542211 1222322222111 12244578999998
Q ss_pred HHHHhcC----CCCeEEecCC
Q 022112 210 IEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~ 226 (302)
..++..+ .+..+.+.++
T Consensus 219 ~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 219 AFLASEEAGYITGATLSINGG 239 (242)
T ss_pred HHHcCchhcCccCCEEEecCC
Confidence 8777542 2346777665
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=119.57 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=102.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhh---------cCCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAA---------VKPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~---------~~~d~ 65 (302)
||++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++.+ ..+|+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL 80 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence 579999999999999999999999988765 46788888888775543 25899
Q ss_pred EEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+||+|+.... +......+.+...+++|+.++..+++.+.+. + .++|++||...+.+.
T Consensus 81 ~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 144 (243)
T PRK07023 81 LINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAY---------------- 144 (243)
T ss_pred EEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCC----------------
Confidence 9999997521 1111234566788899999977776666542 2 368999987654421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--ceEEeeecccC
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--VCTLRVRMPIS 173 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--~~~lR~~~v~g 173 (302)
+....|+.+|...|.+++.+.. ...+|+..+..
T Consensus 145 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~p 179 (243)
T PRK07023 145 --AGWSVYCATKAALDHHARAVALDANRALRIVSLAP 179 (243)
T ss_pred --CCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 2347899999999999987643 24566655543
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=121.49 Aligned_cols=143 Identities=16% Similarity=0.008 Sum_probs=98.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++||||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 3468999999999999999999999998765 457888888887776643
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHH----HHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVG----TLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
++|+|||+||....+ ........+..+++|+.+ +..+++.+++.+ .++|++||...+..... + .....++
T Consensus 95 ~iD~li~nAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~-~---~~~~~~~ 169 (306)
T PRK06197 95 RIDLLINNAGVMYTP-KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAI-H---FDDLQWE 169 (306)
T ss_pred CCCEEEECCccccCC-CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCC-C---ccccCcc
Confidence 689999999975311 112234557788999998 566666666653 46999988764321110 0 0011111
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
.+. ++...|+.+|...+.+.+.+.
T Consensus 170 ~~~-~~~~~Y~~SK~a~~~~~~~la 193 (306)
T PRK06197 170 RRY-NRVAAYGQSKLANLLFTYELQ 193 (306)
T ss_pred cCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 122 233689999999998887653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-13 Score=114.72 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=124.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||.++++.|+++|++|++ +.+|++|++++..++++. .
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999998865 456888888887776642 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+|+...... ......++...+++|+.++..+++++.. .+ .++|++||...+..
T Consensus 87 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------------- 151 (260)
T PRK07063 87 LDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKI--------------- 151 (260)
T ss_pred CcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccC---------------
Confidence 999999999652111 1123456778899999999888888753 22 35899988654331
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc---------ccc-ccccCCcccHh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY---------EKV-VNIPNSMTILD 203 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~---------~~~-~~~~~~~i~v~ 203 (302)
.+....|+.+|...+.+.+.+... ..+|+..+..+... ..+....... ... .....-+...+
T Consensus 152 ---~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 226 (260)
T PRK07063 152 ---IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIE--TQLTEDWWNAQPDPAAARAETLALQPMKRIGRPE 226 (260)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCcc--ChhhhhhhhccCChHHHHHHHHhcCCCCCCCCHH
Confidence 123368999999999998776432 23444433222110 1111111000 000 00112345789
Q ss_pred hHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 204 ELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
|+|.+++.++... ..| .+.+.++.
T Consensus 227 ~va~~~~fl~s~~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 227 EVAMTAVFLASDEAPFINATCITIDGGR 254 (260)
T ss_pred HHHHHHHHHcCccccccCCcEEEECCCe
Confidence 9999999988652 233 55665553
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-13 Score=113.19 Aligned_cols=192 Identities=12% Similarity=0.066 Sum_probs=122.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+.+++|||||+|.||.++++.|+++|+.|++ +.+|+++.+++.+.++.. +
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 85 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT 85 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999999999988765 456888888877766532 6
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHH----HHHHHhC--CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLA----DVCRDKG--LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll----~~~~~~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|++||+|+.... +.......++...+++|+.++..++ +.+++.+ .++|++||...+.
T Consensus 86 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~--------------- 150 (261)
T PRK08936 86 LDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI--------------- 150 (261)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC---------------
Confidence 8999999997531 1112233566778899988776554 4445443 3588888853221
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.+... ..++|+++..+.... .......+.... ....+...+|
T Consensus 151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 223 (261)
T PRK08936 151 ---PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMI----PMGYIGKPEE 223 (261)
T ss_pred ---CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcC----CCCCCcCHHH
Confidence 1234478999998888776654321 556666665442110 011111111111 1234567899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+++++..++... ..| .+.+.++
T Consensus 224 va~~~~~l~s~~~~~~~G~~i~~d~g 249 (261)
T PRK08936 224 IAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_pred HHHHHHHHcCcccCCccCcEEEECCC
Confidence 999999988643 234 4444443
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-13 Score=112.33 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=127.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~----~~d 64 (302)
++++|||||+|.||+++++.|+++|++|++ +.+|++|++++..++++. ++|
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD 87 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPD 87 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCc
Confidence 458999999999999999999999998776 457888888887777642 689
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+||..... ..+....++...+++|+.+...+.+++ ++.+ .++|++||...+.+
T Consensus 88 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~----------------- 150 (263)
T PRK08339 88 IFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEP----------------- 150 (263)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCC-----------------
Confidence 999999965211 112344677788999988776666555 3333 46999999764331
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc----------c---ccc-c-ccCCcc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY----------E---KVV-N-IPNSMT 200 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~----------~---~~~-~-~~~~~i 200 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..+... ..+....... . ... . ...-+.
T Consensus 151 -~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~--T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 227 (263)
T PRK08339 151 -IPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIR--TDRVIQLAQDRAKREGKSVEEALQEYAKPIPLGRLG 227 (263)
T ss_pred -CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCc--cHHHHHHHHhhhhccCCCHHHHHHHHhccCCcccCc
Confidence 122367999999999888776433 45666554432211 1122111100 0 000 0 012356
Q ss_pred cHhhHHHHHHHHHhcC---CC-CeEEecCCCccC
Q 022112 201 ILDELLPISIEMAKRN---LT-GIWNFTNPGVVS 230 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~---~~-~~~~~~~~~~~s 230 (302)
..+|+|.++..++... .. .++.+.++...|
T Consensus 228 ~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~~~ 261 (263)
T PRK08339 228 EPEEIGYLVAFLASDLGSYINGAMIPVDGGRLNS 261 (263)
T ss_pred CHHHHHHHHHHHhcchhcCccCceEEECCCcccc
Confidence 6899999999888642 23 467776665554
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-13 Score=113.88 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=118.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
|+++||||+|+||.++++.|+++|++|++ +.+|+++.+++.+.+++. ++|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999776 347888888776666532 589
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+||.... +..+....+....+++|+.++..+++++.. . +.++|++||...+.+
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~---------------- 144 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVA---------------- 144 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCC----------------
Confidence 99999986521 111234456788999999999999998743 1 246888888643221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc----C----ceEEeeecccCCCCCC--------chhhHHHHhcccccccccCCccc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE----N----VCTLRVRMPISSDLSN--------PRNFITKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~----~----~~~lR~~~v~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~ 201 (302)
.+....|+.+|...+.+.+... . ..+++|+.+..+.... ......... .......+.
T Consensus 145 --~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 217 (272)
T PRK07832 145 --LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWV-----DRFRGHAVT 217 (272)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHH-----HhcccCCCC
Confidence 1233689999997777665432 1 1566776665432100 000000000 001223568
Q ss_pred HhhHHHHHHHHHhcC
Q 022112 202 LDELLPISIEMAKRN 216 (302)
Q Consensus 202 v~D~a~~~~~~~~~~ 216 (302)
.+|+|.+++.+++++
T Consensus 218 ~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 218 PEKAAEKILAGVEKN 232 (272)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999753
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-13 Score=111.47 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=119.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++||||||+|+||+++++.|+++|++|++ +.+|+++++++.+++++. .+|.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 458999999999999999999999988776 567888888887766532 4799
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCcc-ccCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCI-FEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~v-y~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
+||+++.... .......+....++.|+.++..+++.+.+. +.++|++||... ++. .+
T Consensus 85 ii~~ag~~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------------~~ 145 (238)
T PRK05786 85 LVVTVGGYVE-DTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKA------------------SP 145 (238)
T ss_pred EEEcCCCcCC-CchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccC------------------CC
Confidence 9999985421 112223456677889999888888777653 446888887543 221 12
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+++.+.. ..++||++++++.. +..-...+ ......++..+|++++++.++
T Consensus 146 ~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~--~~~~~~~~------~~~~~~~~~~~~va~~~~~~~ 217 (238)
T PRK05786 146 DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFE--PERNWKKL------RKLGDDMAPPEDFAKVIIWLL 217 (238)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCC--chhhhhhh------ccccCCCCCHHHHHHHHHHHh
Confidence 336799999998877655432 27788888887522 11000110 111223567899999999988
Q ss_pred hc
Q 022112 214 KR 215 (302)
Q Consensus 214 ~~ 215 (302)
..
T Consensus 218 ~~ 219 (238)
T PRK05786 218 TD 219 (238)
T ss_pred cc
Confidence 65
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=118.92 Aligned_cols=143 Identities=15% Similarity=0.034 Sum_probs=102.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++++||||+|+||.+++++|+++|++|++ +.+|+++.+++++++++.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 4578999999999999999999999999876 467899988888776643
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR----DKGLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++|++||+||....+.........+..+.+|+.++..+.+.+. +...++|++||...+..... ...+.++.
T Consensus 93 ~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~-----~~~~~~~~ 167 (313)
T PRK05854 93 PIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAIN-----WDDLNWER 167 (313)
T ss_pred CccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcC-----cccccccc
Confidence 5899999999763222123445677889999999877776664 33457899988754322110 11222222
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
.. ++...|+.+|...+.+.+.+.
T Consensus 168 ~~-~~~~~Y~~SK~a~~~~~~~la 190 (313)
T PRK05854 168 SY-AGMRAYSQSKIAVGLFALELD 190 (313)
T ss_pred cC-cchhhhHHHHHHHHHHHHHHH
Confidence 22 234789999999999887653
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-13 Score=108.65 Aligned_cols=168 Identities=15% Similarity=0.079 Sum_probs=116.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc---CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV---KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~---~~d~Vi~~a~~ 72 (302)
|++++||||+|+||++++++|+++|++|++ +.+|+++.+.+..++... ++|+|||+++.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~ 80 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV 80 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 458999999999999999999999998766 577889988887765432 58999999997
Q ss_pred CCCC---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 73 TGRP---NVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 73 ~~~~---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
.... .......++...+++|+.++.++++++.+. +.+++++||.. .++... . .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~---------------~-~~~~ 144 (222)
T PRK06953 81 YGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT---------------G-TTGW 144 (222)
T ss_pred ccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc---------------C-CCcc
Confidence 5210 011245677889999999999999988752 33588887754 444211 1 1114
Q ss_pred chhhhHHHHHHHHHhhcCc------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 145 FYSKTKAMVEELLKNFENV------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.|+.+|...+.+++.+... ..++|+++.-+ +.. ....+..++.+..+..++..
T Consensus 145 ~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~-----------~~~-------~~~~~~~~~~~~~~~~~~~~ 203 (222)
T PRK06953 145 LYRASKAALNDALRAASLQARHATCIALHPGWVRTD-----------MGG-------AQAALDPAQSVAGMRRVIAQ 203 (222)
T ss_pred ccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecC-----------CCC-------CCCCCCHHHHHHHHHHHHHh
Confidence 6999999999998776432 22333333221 000 11235678889888887765
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=125.46 Aligned_cols=191 Identities=15% Similarity=0.134 Sum_probs=128.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+++|||||+|.||.++++.|+++|++|++ +.+|++|++++.++++.. .+|++|
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 348 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLV 348 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999998876 568899999888777642 689999
Q ss_pred EccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 68 ~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+||... .+.......++...+++|+.++.++++++... +.++|++||...+.. .+.
T Consensus 349 ~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------------~~~ 410 (520)
T PRK06484 349 NNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLA------------------LPP 410 (520)
T ss_pred ECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCC------------------CCC
Confidence 9999652 11122344567889999999999999888663 346999998754431 123
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc----hhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP----RNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
...|+.+|...+.+++.++.. ..+.|+++..+..... ......+.+.. ....+...+|+|++++
T Consensus 411 ~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dia~~~~ 486 (520)
T PRK06484 411 RNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRI----PLGRLGDPEEVAEAIA 486 (520)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcC----CCCCCcCHHHHHHHHH
Confidence 478999999999988776432 3344444433211000 00011111110 1123467899999999
Q ss_pred HHHhcC---C-CCeEEecCC
Q 022112 211 EMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 211 ~~~~~~---~-~~~~~~~~~ 226 (302)
.++... . +..+.+.++
T Consensus 487 ~l~s~~~~~~~G~~i~vdgg 506 (520)
T PRK06484 487 FLASPAASYVNGATLTVDGG 506 (520)
T ss_pred HHhCccccCccCcEEEECCC
Confidence 988753 2 336666655
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-13 Score=110.15 Aligned_cols=176 Identities=17% Similarity=0.104 Sum_probs=116.8
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
||||||+|+||.++++.|+++|++|++ +.+|+++.+++..++++. .+|.+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 689999999999999999999988765 578888888877766532 67999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHH-----Hh-CCeEEEEcCCc-cccCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCR-----DK-GLILINYATGC-IFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~-----~~-~~~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~ 138 (302)
||+|+..... .......++...+++|+.++.++++++. +. ..++|++||.. .++.
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------------- 143 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN----------------- 143 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------------
Confidence 9999865211 1123455778899999999999988762 12 23588888864 3331
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+.+.+... ..++|+++..+............... .. ..-+...+|++++++
T Consensus 144 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~---~~-~~~~~~~~~va~~~~ 217 (239)
T TIGR01831 144 --RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEHDLDEALKT---VP-MNRMGQPAEVASLAG 217 (239)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhHHHHHHHhc---CC-CCCCCCHHHHHHHHH
Confidence 12368999999888777654322 44666665543211101111111111 11 123456799999999
Q ss_pred HHHhc
Q 022112 211 EMAKR 215 (302)
Q Consensus 211 ~~~~~ 215 (302)
.++..
T Consensus 218 ~l~~~ 222 (239)
T TIGR01831 218 FLMSD 222 (239)
T ss_pred HHcCc
Confidence 98875
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-13 Score=111.66 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=113.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE--------------------------eecCCCChhhHHHHHhh----c
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY--------------------------GSGRLENRASLEADIAA----V 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~--------------------------~~~dl~~~~~~~~~~~~----~ 61 (302)
+.+++|||||+|.||.+++++|+++| ++|++ +.+|++|.+++.+.++. .
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 45689999999999999999999985 77665 45677777776555443 3
Q ss_pred CCCEEEEccccCCCCCcch-hhhhHHHHHHHhHHHHHH----HHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDW-CESHKVETIRTNVVGTLT----LADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~-~~~~~~~~~~~n~~~~~~----ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
++|++||++|........+ ...+....+++|+.++.. +++.+++.+ .++|++||...+.+
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~-------------- 152 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERV-------------- 152 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCC--------------
Confidence 7999999998753110001 111223468999988876 555666554 35899988643221
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhc--------CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFE--------NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+....|+.+|.....+.+.+. +..+++|+++.-+ +.... . .....+..+|+|+
T Consensus 153 ----~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~-------~~~~~-~------~~~~~~~~~~~A~ 214 (253)
T PRK07904 153 ----RRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTR-------MSAHA-K------EAPLTVDKEDVAK 214 (253)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecc-------hhccC-C------CCCCCCCHHHHHH
Confidence 1233679999999887654432 1256677776542 11111 0 0112357899999
Q ss_pred HHHHHHhcCCCC
Q 022112 208 ISIEMAKRNLTG 219 (302)
Q Consensus 208 ~~~~~~~~~~~~ 219 (302)
.++.+++++...
T Consensus 215 ~i~~~~~~~~~~ 226 (253)
T PRK07904 215 LAVTAVAKGKEL 226 (253)
T ss_pred HHHHHHHcCCCE
Confidence 999999875443
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=116.26 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=99.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-----CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~ 73 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. .+|+|||+|+..
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 88 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQHENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGIN 88 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 468999999999999999999999998876 567999999888777643 689999999964
Q ss_pred CCCC----------cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 74 GRPN----------VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 74 ~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
.... ......++...+++|+.++..+++++... ..++|++||...+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 152 (266)
T PRK06171 89 IPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS---------------- 152 (266)
T ss_pred CCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC----------------
Confidence 2100 11234566788999999999999888653 2358888886543311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+....|+.+|...+.+++.++
T Consensus 153 --~~~~~Y~~sK~a~~~l~~~la 173 (266)
T PRK06171 153 --EGQSCYAATKAALNSFTRSWA 173 (266)
T ss_pred --CCCchhHHHHHHHHHHHHHHH
Confidence 123789999999999887764
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=125.40 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=100.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++. ++|
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 394 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVPD 394 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCCc
Confidence 468999999999999999999999999876 468999999888777643 589
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||....+. .+....+....+++|+.++.++++++.. .+ .++|++||.+.|...
T Consensus 395 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------------- 459 (582)
T PRK05855 395 IVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS--------------- 459 (582)
T ss_pred EEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC---------------
Confidence 9999999763111 1223456778889999999998887643 22 479999998776532
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+....|+.+|...+.+++.+.
T Consensus 460 ---~~~~~Y~~sKaa~~~~~~~l~ 480 (582)
T PRK05855 460 ---RSLPAYATSKAAVLMLSECLR 480 (582)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHH
Confidence 133789999999998876653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-13 Score=111.88 Aligned_cols=193 Identities=15% Similarity=0.109 Sum_probs=120.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||++.||+++++.|++.|++|++ +.+|++|++++.+++++. +
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 87 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFDR 87 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999998765 456888888887777643 6
Q ss_pred CCEEEEccccCCC-------CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-------PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSG 130 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-------~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~ 130 (302)
+|++||+|+.... +............+++|+.+...+.+.+. +.+ .++|++||...+.
T Consensus 88 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---------- 157 (260)
T PRK08416 88 VDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLV---------- 157 (260)
T ss_pred ccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccccc----------
Confidence 8999999985310 00111234556677888877666555543 333 3689998854221
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccccc------ccccCCccc
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKV------VNIPNSMTI 201 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~------~~~~~~~i~ 201 (302)
+.+....|+.+|...+.+++.++.. ..+|+..+..+... ..+.......... .....-+..
T Consensus 158 --------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~--T~~~~~~~~~~~~~~~~~~~~~~~r~~~ 227 (260)
T PRK08416 158 --------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPID--TDALKAFTNYEEVKAKTEELSPLNRMGQ 227 (260)
T ss_pred --------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCccc--ChhhhhccCCHHHHHHHHhcCCCCCCCC
Confidence 1122368999999999998776543 34555444332111 1111111000000 000123567
Q ss_pred HhhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 202 LDELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 202 v~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
.+|++.+++.++... ..| .+.+.++
T Consensus 228 p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 228 PEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred HHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 899999999988653 233 5566554
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-13 Score=111.62 Aligned_cols=195 Identities=14% Similarity=0.071 Sum_probs=120.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
|++|||||+|.||+.++++|+++|++|++ +.+|++|.+++.+++++. ++|+|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 68999999999999999999999998776 467888988887777532 78999
Q ss_pred EEccccCCC---CCcchhhhhHHHHHHHhHHHHHHHHHH----HH-Hh-CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGR---PNVDWCESHKVETIRTNVVGTLTLADV----CR-DK-GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 67 i~~a~~~~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~----~~-~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
||+||.... +..+....+....+.+|+.++..+... +. +. +.++|++||...+..
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~---------------- 144 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP---------------- 144 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC----------------
Confidence 999996420 011122334455667777665544433 32 22 346999998765431
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch--hhHHHHhc--c--------cccc-c-ccCCcc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR--NFITKITR--Y--------EKVV-N-IPNSMT 200 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~--~~~~~~~~--~--------~~~~-~-~~~~~i 200 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..+....+. ..+..... + .... . ...-+.
T Consensus 145 --~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 222 (259)
T PRK08340 145 --MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTG 222 (259)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCC
Confidence 123368999999999998776443 45666554432211110 00110000 0 0000 0 012356
Q ss_pred cHhhHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 201 ILDELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
..+|+|++++.++... ..| +..+.++.
T Consensus 223 ~p~dva~~~~fL~s~~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 223 RWEELGSLIAFLLSENAEYMLGSTIVFDGAM 253 (259)
T ss_pred CHHHHHHHHHHHcCcccccccCceEeecCCc
Confidence 7899999999988743 234 55665553
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-13 Score=112.25 Aligned_cols=179 Identities=14% Similarity=0.095 Sum_probs=111.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------ecCCC--ChhhHHHHHhh-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------SGRLE--NRASLEADIAA----- 60 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------~~dl~--~~~~~~~~~~~----- 60 (302)
..+++|||||+|+||.+++++|++.|++|+++ .+|++ +.+++.++++.
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 90 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQF 90 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999998763 23443 34443333321
Q ss_pred cCCCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCC
Q 022112 61 VKPTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 61 ~~~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
.++|+|||+|+.... +........+...+++|+.++.++++++.+ .+. ++|++||.....+
T Consensus 91 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~------------ 158 (247)
T PRK08945 91 GRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQG------------ 158 (247)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCC------------
Confidence 168999999986421 111223456778999999998888887743 333 4888888643221
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
.+....|+.+|...+.+++.+... ..+|+..+..... .. .+-....... ....+...+|+++++.
T Consensus 159 ------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v-~t-~~~~~~~~~~----~~~~~~~~~~~~~~~~ 226 (247)
T PRK08945 159 ------RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGT-RT-AMRASAFPGE----DPQKLKTPEDIMPLYL 226 (247)
T ss_pred ------CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCc-cC-cchhhhcCcc----cccCCCCHHHHHHHHH
Confidence 112368999999999988765332 3344332211111 00 0101111111 1223567799999999
Q ss_pred HHHhc
Q 022112 211 EMAKR 215 (302)
Q Consensus 211 ~~~~~ 215 (302)
.++..
T Consensus 227 ~~~~~ 231 (247)
T PRK08945 227 YLMGD 231 (247)
T ss_pred HHhCc
Confidence 98754
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=108.45 Aligned_cols=172 Identities=16% Similarity=0.135 Sum_probs=112.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
+++++||||+|+||+++++.|+++|++|++ +.+|+++.+++.+.+. ++|++||+||...
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~iDilVnnAG~~~ 91 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLA--SLDVLILNHGINP 91 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcC--CCCEEEECCccCC
Confidence 468999999999999999999999999876 3457778888877776 7999999999652
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-------CCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-------GLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
......+++...+++|+.++.++++++... +.+ +++.||...+. ++ ....|
T Consensus 92 --~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~-----------------~~--~~~~Y 150 (245)
T PRK12367 92 --GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ-----------------PA--LSPSY 150 (245)
T ss_pred --cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-----------------CC--CCchh
Confidence 112335678889999999999999987542 123 44444432211 11 22579
Q ss_pred hhhHHHHHHHH---Hhhc---CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCCe
Q 022112 147 SKTKAMVEELL---KNFE---NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGI 220 (302)
Q Consensus 147 ~~~K~~~E~~~---~~~~---~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~ 220 (302)
+.+|...+.+. +++. ....++...+..... ...+ . ....+..+|+|+.++.+++++...+
T Consensus 151 ~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~--~t~~-----~-------~~~~~~~~~vA~~i~~~~~~~~~~~ 216 (245)
T PRK12367 151 EISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPF--RSEL-----N-------PIGIMSADFVAKQILDQANLGLYLI 216 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCc--cccc-----C-------ccCCCCHHHHHHHHHHHHhcCCceE
Confidence 99999975432 2221 123344443332211 1111 0 1124678999999999998765544
Q ss_pred EE
Q 022112 221 WN 222 (302)
Q Consensus 221 ~~ 222 (302)
+.
T Consensus 217 ~~ 218 (245)
T PRK12367 217 IV 218 (245)
T ss_pred EE
Confidence 43
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-12 Score=107.77 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=117.8
Q ss_pred ccEEEEEcCCc-chHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTG-WIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG-~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
.+++|||||+| -||+.+++.|+++|++|++ +.+|+++.+++.++++..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 96 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLG 96 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46899999998 6999999999999988776 345888888877766542
Q ss_pred CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
++|+|||+|+...... ......++...+++|+.++..+++++.. . +..+|++||...+.
T Consensus 97 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~-------------- 162 (262)
T PRK07831 97 RLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR-------------- 162 (262)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC--------------
Confidence 7899999999652111 1123356677888999999888887754 2 23477777643221
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+++.++.. ..++|+.+..+.... .......+....+ ..-+...+|
T Consensus 163 ----~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~----~~r~~~p~~ 234 (262)
T PRK07831 163 ----AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREA----FGRAAEPWE 234 (262)
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCC----CCCCcCHHH
Confidence 1123368999999999998776422 445555554432110 1122222222111 123556799
Q ss_pred HHHHHHHHHhc
Q 022112 205 LLPISIEMAKR 215 (302)
Q Consensus 205 ~a~~~~~~~~~ 215 (302)
++++++.++..
T Consensus 235 va~~~~~l~s~ 245 (262)
T PRK07831 235 VANVIAFLASD 245 (262)
T ss_pred HHHHHHHHcCc
Confidence 99999998875
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-12 Score=109.80 Aligned_cols=192 Identities=16% Similarity=0.141 Sum_probs=117.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhH----HHHHhh----
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASL----EADIAA---- 60 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~----~~~~~~---- 60 (302)
..++||||+|+||+++++.|+++|++|++ +.+|++|.+++ .+.++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 36999999999999999999999998876 35688887654 333322
Q ss_pred -cCCCEEEEccccCCCCCc-chhh-----------hhHHHHHHHhHHHHHHHHHHHHHhC-----------CeEEEEcCC
Q 022112 61 -VKPTHVFNAAGVTGRPNV-DWCE-----------SHKVETIRTNVVGTLTLADVCRDKG-----------LILINYATG 116 (302)
Q Consensus 61 -~~~d~Vi~~a~~~~~~~~-~~~~-----------~~~~~~~~~n~~~~~~ll~~~~~~~-----------~~~v~~SS~ 116 (302)
.++|+|||+||....... .... .+....+++|+.++..+++++.... ..++.+||.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 269999999996421000 0111 1356789999999999988764321 135555553
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc
Q 022112 117 CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR 188 (302)
Q Consensus 117 ~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~ 188 (302)
.... +.+....|+.+|...+.+++.+... ..++|+++..+.. .+..+......
T Consensus 162 ~~~~------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~-~~~~~~~~~~~ 222 (267)
T TIGR02685 162 MTDQ------------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDA-MPFEVQEDYRR 222 (267)
T ss_pred hccC------------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccc-cchhHHHHHHH
Confidence 2211 1223478999999999998776432 4555555533211 11111111111
Q ss_pred ccccccccCCcccHhhHHHHHHHHHhcC---CCC-eEEecCCCc
Q 022112 189 YEKVVNIPNSMTILDELLPISIEMAKRN---LTG-IWNFTNPGV 228 (302)
Q Consensus 189 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~~ 228 (302)
. ......+...+|++.+++.++... ..| .+.+.++..
T Consensus 223 ~---~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~~ 263 (267)
T TIGR02685 223 K---VPLGQREASAEQIADVVIFLVSPKAKYITGTCIKVDGGLS 263 (267)
T ss_pred h---CCCCcCCCCHHHHHHHHHHHhCcccCCcccceEEECCcee
Confidence 1 111123457899999999988653 233 556655543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=107.06 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=122.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc--CCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV--KPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~--~~d~Vi~~a~~~ 73 (302)
||++||||+|.||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|++||+|+..
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~ 80 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS 80 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence 58999999999999999999999999876 568899999888877643 589999999842
Q ss_pred CC---CC---cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 74 GR---PN---VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 74 ~~---~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
.. +. ......++...+++|+.++.++++++... +.++|++||.. . +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~--~--------------------~~~~ 138 (223)
T PRK05884 81 WDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN--P--------------------PAGS 138 (223)
T ss_pred ccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC--C--------------------CCcc
Confidence 10 00 00123567889999999999999988652 34688888743 1 1236
Q ss_pred chhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---C-
Q 022112 145 FYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---L- 217 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~- 217 (302)
.|+.+|...+.+.+.+... ..+|+..+..+....+ ...... . .+....+|+++++..++... .
T Consensus 139 ~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~--~~~~~~---~-----~p~~~~~~ia~~~~~l~s~~~~~v~ 208 (223)
T PRK05884 139 AEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP--GYDGLS---R-----TPPPVAAEIARLALFLTTPAARHIT 208 (223)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch--hhhhcc---C-----CCCCCHHHHHHHHHHHcCchhhccC
Confidence 8999999999998776443 4466655544322111 111110 0 01126799999999988642 2
Q ss_pred CCeEEecCC
Q 022112 218 TGIWNFTNP 226 (302)
Q Consensus 218 ~~~~~~~~~ 226 (302)
+.++.+.++
T Consensus 209 G~~i~vdgg 217 (223)
T PRK05884 209 GQTLHVSHG 217 (223)
T ss_pred CcEEEeCCC
Confidence 235555554
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=111.58 Aligned_cols=133 Identities=18% Similarity=0.167 Sum_probs=95.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc---CCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV---KPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~---~~d~Vi~~a~ 71 (302)
|++++||||+|++|+.++++|+++|++|++ ..+|++|.+++.++++.. ++|+|||+|+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence 458999999999999999999999998886 567888888777766643 6999999998
Q ss_pred cCCCCC---cchhhhhHHHHHHHhHHHHHHHHHHHHHh---C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTGRPN---VDWCESHKVETIRTNVVGTLTLADVCRDK---G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 72 ~~~~~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
...... ......+....+.+|+.++..+++++... + ..++++||. ++... .++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~-------------~~~~~~~~ 145 (225)
T PRK08177 81 ISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVE-------------LPDGGEMP 145 (225)
T ss_pred ccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--ccccc-------------cCCCCCcc
Confidence 752110 11233466678889999999888887643 2 346777663 33211 01112235
Q ss_pred chhhhHHHHHHHHHhhc
Q 022112 145 FYSKTKAMVEELLKNFE 161 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~ 161 (302)
.|+.+|...+.+++.+.
T Consensus 146 ~Y~~sK~a~~~~~~~l~ 162 (225)
T PRK08177 146 LYKASKAALNSMTRSFV 162 (225)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 79999999999987764
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=112.55 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=95.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
+++++||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|++|
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 84 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLI 84 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 458999999999999999999999999876 456888888777666542 789999
Q ss_pred EccccCCCCCc--chh----hhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNV--DWC----ESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 68 ~~a~~~~~~~~--~~~----~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+||....... ... ..++...+++|+.++..+++++.+. +.++|++||...+..
T Consensus 85 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~---------------- 148 (262)
T TIGR03325 85 PNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP---------------- 148 (262)
T ss_pred ECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC----------------
Confidence 99986420001 111 1246678999999999999988653 235888877643321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN 162 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~ 162 (302)
.+....|+.+|...+.+++.++.
T Consensus 149 --~~~~~~Y~~sKaa~~~l~~~la~ 171 (262)
T TIGR03325 149 --NGGGPLYTAAKHAVVGLVKELAF 171 (262)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHH
Confidence 11236899999999999877643
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=123.00 Aligned_cols=176 Identities=14% Similarity=0.084 Sum_probs=122.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.++++|||||+|+||.++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 449 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHV 449 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 3568999999999999999999999998776 467999999888777643 69
Q ss_pred CEEEEccccCCCCCcchh---hhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWC---ESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~---~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||....+..... ..+....+++|+.++.++.+++. +.+ .++|++||...+...
T Consensus 450 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 516 (657)
T PRK07201 450 DYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA------------- 516 (657)
T ss_pred CEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC-------------
Confidence 999999996421111111 24677889999999888877653 333 359999998776522
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+... ..++|+.+..+.. .+. .. . .....+..+++|+
T Consensus 517 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~-~~~------~~----~-~~~~~~~~~~~a~ 579 (657)
T PRK07201 517 -----PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMI-APT------KR----Y-NNVPTISPEEAAD 579 (657)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCccccc-Ccc------cc----c-cCCCCCCHHHHHH
Confidence 12368999999999988765422 4455655543211 000 00 0 0122467899999
Q ss_pred HHHHHHhcCCC
Q 022112 208 ISIEMAKRNLT 218 (302)
Q Consensus 208 ~~~~~~~~~~~ 218 (302)
.++..+.+...
T Consensus 580 ~i~~~~~~~~~ 590 (657)
T PRK07201 580 MVVRAIVEKPK 590 (657)
T ss_pred HHHHHHHhCCc
Confidence 99998765433
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-12 Score=107.07 Aligned_cols=178 Identities=14% Similarity=0.076 Sum_probs=116.2
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------------------eecCCCChhhHHH
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------------------GSGRLENRASLEA 56 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------------------~~~dl~~~~~~~~ 56 (302)
++++|||||+| .||.+++++|+++|++|++ +.+|+++.+++.+
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~ 85 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKE 85 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 46899999995 7999999999999977653 4578888888777
Q ss_pred HHhhc-----CCCEEEEccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHh-CCeEEEEcCCccccCCCCC
Q 022112 57 DIAAV-----KPTHVFNAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVC----RDK-GLILINYATGCIFEYDSGH 125 (302)
Q Consensus 57 ~~~~~-----~~d~Vi~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~-~~~~v~~SS~~vy~~~~~~ 125 (302)
++... .+|+|||+|+... .+......++....+++|+.++..+.+++ ++. +.++|++||.....
T Consensus 86 ~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~----- 160 (256)
T PRK12859 86 LLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQG----- 160 (256)
T ss_pred HHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCC-----
Confidence 76533 5899999999652 11122334567778999999988775444 322 33689998865332
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccC
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPN 197 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 197 (302)
+.+....|+.+|...+.+.+++... ..++|+.+-.+.. ...+...+.... ...
T Consensus 161 -------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~--~~~~~~~~~~~~----~~~ 221 (256)
T PRK12859 161 -------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWM--TEEIKQGLLPMF----PFG 221 (256)
T ss_pred -------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCC--CHHHHHHHHhcC----CCC
Confidence 1123478999999999987765422 4455555433211 111111111111 112
Q ss_pred CcccHhhHHHHHHHHHhc
Q 022112 198 SMTILDELLPISIEMAKR 215 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~ 215 (302)
.+...+|++++++.++..
T Consensus 222 ~~~~~~d~a~~~~~l~s~ 239 (256)
T PRK12859 222 RIGEPKDAARLIKFLASE 239 (256)
T ss_pred CCcCHHHHHHHHHHHhCc
Confidence 345689999999988764
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=113.92 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=113.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++++++||||+|+||++++++|.++|++|++ +.+|++|.+++.+.+. ++|++||+||
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~--~IDiLInnAG 254 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLE--KVDILIINHG 254 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhC--CCCEEEECCC
Confidence 3568999999999999999999999998875 3468888888888887 8999999998
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C---Ce-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK----G---LI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
... ..+...++....+++|+.++.++++++.+. + .+ +++.+|++... + +..
T Consensus 255 i~~--~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~~-----------------~--~~~ 313 (406)
T PRK07424 255 INV--HGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEVN-----------------P--AFS 313 (406)
T ss_pred cCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccccc-----------------C--CCc
Confidence 652 123345577889999999999999987542 2 12 33333322111 1 122
Q ss_pred CchhhhHHHHHHHHHh--hcCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCCeE
Q 022112 144 SFYSKTKAMVEELLKN--FENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIW 221 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~--~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 221 (302)
..|+.+|...+.+... ......+|.. +.|+-. ..+ .....+..+|+|+.++.+++++...++
T Consensus 314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i-~~gp~~---t~~------------~~~~~~spe~vA~~il~~i~~~~~~i~ 377 (406)
T PRK07424 314 PLYELSKRALGDLVTLRRLDAPCVVRKL-ILGPFK---SNL------------NPIGVMSADWVAKQILKLAKRDFRNII 377 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEE-EeCCCc---CCC------------CcCCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 4699999999886532 1112333332 223211 111 011235789999999999987655433
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=109.59 Aligned_cols=182 Identities=15% Similarity=0.188 Sum_probs=115.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc---------C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV---------K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~---------~ 62 (302)
|+++|||||+|+||+.++++|+++|++|++ +.+|+++.+++..++++. +
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS 80 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence 458999999999999999999999998765 578888888887776532 1
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC--CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVC----RDKG--LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
..++||+||.... +.......+....+++|+.+...+++.+ ++.+ .++|++||...+.
T Consensus 81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------------- 146 (251)
T PRK06924 81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN-------------- 146 (251)
T ss_pred ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC--------------
Confidence 2278999986421 0112234566778888988865555544 4332 3588988865432
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhc--cccc--------ccccCCc
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITR--YEKV--------VNIPNSM 199 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~--~~~~--------~~~~~~~ 199 (302)
+.+....|+.+|...+.+++.++.. ..+|+..+..+.. ...+...+.. .... .....-+
T Consensus 147 ----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (251)
T PRK06924 147 ----PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVM--DTNMQAQIRSSSKEDFTNLDRFITLKEEGKL 220 (251)
T ss_pred ----CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCcc--ccHhHHHHHhcCcccchHHHHHHHHhhcCCc
Confidence 1123478999999999998766422 3455555443211 1112111110 0000 0011236
Q ss_pred ccHhhHHHHHHHHHhc
Q 022112 200 TILDELLPISIEMAKR 215 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~ 215 (302)
...+|+|++++.++..
T Consensus 221 ~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 221 LSPEYVAKALRNLLET 236 (251)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7889999999998875
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.5e-13 Score=112.44 Aligned_cols=131 Identities=21% Similarity=0.146 Sum_probs=96.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++..++++. ++|++|
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 85 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFV 85 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 358999999999999999999999999876 457888888877776543 799999
Q ss_pred EccccCCCC-Cc-chhhh----hHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NV-DWCES----HKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 68 ~~a~~~~~~-~~-~~~~~----~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|+..... .. ..... .+...+++|+.++..+++++.. .+.++|++||...+.+.
T Consensus 86 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------------- 150 (263)
T PRK06200 86 GNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG--------------- 150 (263)
T ss_pred ECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC---------------
Confidence 999964200 00 11111 2556788999998888877754 33468888887654321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN 162 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~ 162 (302)
+....|+.+|...+.+++.++.
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~la~ 172 (263)
T PRK06200 151 ---GGGPLYTASKHAVVGLVRQLAY 172 (263)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHH
Confidence 1236899999999998876543
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=107.59 Aligned_cols=173 Identities=18% Similarity=0.046 Sum_probs=111.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee-------------------------cCCCC--hhhHHHHHh----h--
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS-------------------------GRLEN--RASLEADIA----A-- 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-------------------------~dl~~--~~~~~~~~~----~-- 60 (302)
++++|||||+|+||.+++++|+++|++|+++. .|+.+ .+++.++++ .
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~~ 85 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEATQ 85 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999988622 45543 223333221 1
Q ss_pred cCCCEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 61 VKPTHVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 61 ~~~d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
.++|+|||+|+... .+..+....++...+++|+.++.++++++.+. ..++|++||.....
T Consensus 86 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~------------- 152 (239)
T PRK08703 86 GKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGET------------- 152 (239)
T ss_pred CCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEecccccc-------------
Confidence 26899999999642 11122334566778999999998888887542 24688888743211
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+++.++.. ..++|+++..+.. .....+. ....+...+|
T Consensus 153 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~-------~~~~~~~----~~~~~~~~~~ 216 (239)
T PRK08703 153 -----PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQR-------IKSHPGE----AKSERKSYGD 216 (239)
T ss_pred -----CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccc-------cccCCCC----CccccCCHHH
Confidence 1123368999999999987665322 3455555554421 0010111 1123457899
Q ss_pred HHHHHHHHHhc
Q 022112 205 LLPISIEMAKR 215 (302)
Q Consensus 205 ~a~~~~~~~~~ 215 (302)
++.++..++..
T Consensus 217 ~~~~~~~~~~~ 227 (239)
T PRK08703 217 VLPAFVWWASA 227 (239)
T ss_pred HHHHHHHHhCc
Confidence 99999888863
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=106.21 Aligned_cols=191 Identities=12% Similarity=0.070 Sum_probs=124.2
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++++||||+ +-||..++++|+++|++|++ +.+|++++++++++++.. ++|+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~ 86 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDG 86 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4589999999 79999999999999998775 568999998887766532 6899
Q ss_pred EEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+||+||... .+..+...+++...+++|+.++..+++++... +.++|++||.....
T Consensus 87 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~----------------- 149 (252)
T PRK06079 87 IVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER----------------- 149 (252)
T ss_pred EEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc-----------------
Confidence 999999652 01112234567788899999998888877653 33688888754221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--------hhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--------RNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+..+....+ ......+... . ...-+...+|+|
T Consensus 150 -~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~--p~~r~~~pedva 224 (252)
T PRK06079 150 -AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSR--T--VDGVGVTIEEVG 224 (252)
T ss_pred -cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhc--C--cccCCCCHHHHH
Confidence 1123468999999999998776432 3445444333211111 0111111110 0 112356789999
Q ss_pred HHHHHHHhcC---CCC-eEEecCC
Q 022112 207 PISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 207 ~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+++..++... ..| ++.+.++
T Consensus 225 ~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 225 NTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred HHHHHHhCcccccccccEEEeCCc
Confidence 9999988642 223 5555443
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-12 Score=105.42 Aligned_cols=130 Identities=13% Similarity=0.044 Sum_probs=93.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+++|||||+|+||.++++.|+++|++|++ +.+|++|.+++.+++++. .
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG 87 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999998875 356888988887766532 6
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||...... ......++...+++|+.+...+++.+. +.+ .++|++||...+...
T Consensus 88 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 153 (265)
T PRK07062 88 VDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE-------------- 153 (265)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC--------------
Confidence 899999999652111 112334567788888887776666553 332 368899886543311
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+....|+.+|...+.+.+.++
T Consensus 154 ----~~~~~y~asKaal~~~~~~la 174 (265)
T PRK07062 154 ----PHMVATSAARAGLLNLVKSLA 174 (265)
T ss_pred ----CCchHhHHHHHHHHHHHHHHH
Confidence 223689999999888876643
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5e-12 Score=108.33 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=126.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------------eecCCCChhhHHHHHhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------------GSGRLENRASLEADIAA 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------------~~~dl~~~~~~~~~~~~ 60 (302)
.+++|||||++.||..+++.|++.|++|++ +.+|++|.+++.++++.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 468999999999999999999999987754 34688888877766643
Q ss_pred -----cCCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-------CCeEEEEcCCccccCCC
Q 022112 61 -----VKPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-------GLILINYATGCIFEYDS 123 (302)
Q Consensus 61 -----~~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-------~~~~v~~SS~~vy~~~~ 123 (302)
.++|++||+||..... ..+....++...+++|+.++..+++++.. . ..++|++||...+.+
T Consensus 86 ~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~-- 163 (286)
T PRK07791 86 AVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG-- 163 (286)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC--
Confidence 2789999999975311 11233457788999999999888877642 1 136888888653221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--hhhHHHHhcccccccccCC
Q 022112 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNS 198 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~ 198 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+... .... ......+.... ......
T Consensus 164 ----------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~~~~~~~~--~~~~~~ 224 (286)
T PRK07791 164 ----------------SVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVFAEMMAKP--EEGEFD 224 (286)
T ss_pred ----------------CCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhHHHHHhcC--cccccC
Confidence 123368999999999988776433 45666665432 1111 11111111111 101113
Q ss_pred cccHhhHHHHHHHHHhcC---CCC-eEEecCCCcc
Q 022112 199 MTILDELLPISIEMAKRN---LTG-IWNFTNPGVV 229 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~~~ 229 (302)
+...+|+|++++.++... ..| .+.+.++...
T Consensus 225 ~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~~ 259 (286)
T PRK07791 225 AMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKIS 259 (286)
T ss_pred CCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCceE
Confidence 457899999999988642 234 5666555443
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-12 Score=105.76 Aligned_cols=191 Identities=17% Similarity=0.121 Sum_probs=124.2
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+.+|||||++ .||+.+++.|+++|++|++ +.+|++|.++++.+++.. ++
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 86 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGKL 86 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence 35799999996 8999999999999998875 457899988877766542 78
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||.... +..+....++...+++|+.++.++++++... +.++|++||.....
T Consensus 87 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~--------------- 151 (271)
T PRK06505 87 DFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR--------------- 151 (271)
T ss_pred CEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc---------------
Confidence 999999996520 1112234567788899999998888776542 34688888864321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch--h------hHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR--N------FITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~--~------~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.|....|+.+|...+.+.+.++.. ..+|+..+.......+. . ....... . . . ..-+...+|
T Consensus 152 ---~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~-~-~-p-~~r~~~pee 224 (271)
T PRK06505 152 ---VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQR-N-S-P-LRRTVTIDE 224 (271)
T ss_pred ---cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhh-c-C-C-ccccCCHHH
Confidence 1123368999999999988776433 34555544432211110 0 0111111 0 0 1 122456899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+|++++.++... ..| .+.+.++
T Consensus 225 va~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 225 VGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred HHHHHHHHhCccccccCceEEeecCC
Confidence 999999988642 234 5666555
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-12 Score=115.44 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=98.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+++|||||+|.||..+++.|.++|++|++ +.+|+++.+++.++++.. ++|+||
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~vi 289 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVV 289 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 468999999999999999999999999876 346888888877766543 689999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHhC-----CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDKG-----LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+...... ...........+.+|+.++.++.+++.... .++|++||...+.+. +
T Consensus 290 ~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~------------------~ 351 (450)
T PRK08261 290 HNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN------------------R 351 (450)
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC------------------C
Confidence 9999762111 112345667889999999999999997632 468999886543211 1
Q ss_pred CCCchhhhHHHHHHHHHhhc
Q 022112 142 VGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~ 161 (302)
....|+.+|...+.+++.+.
T Consensus 352 ~~~~Y~asKaal~~~~~~la 371 (450)
T PRK08261 352 GQTNYAASKAGVIGLVQALA 371 (450)
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 23789999998877776653
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=105.13 Aligned_cols=181 Identities=13% Similarity=0.058 Sum_probs=114.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEE----------------EeecCCCChhhHHHHHhhc-CCCEEEEccccCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFT----------------YGSGRLENRASLEADIAAV-KPTHVFNAAGVTGR 75 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~----------------~~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~~ 75 (302)
|+++||||+|+||++++++|+++| +.|. .+.+|+++.++++++.+.. ++|+|||+||....
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~~ 80 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHT 80 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccccccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCccccc
Confidence 689999999999999999999985 3332 2678999998877765543 78999999997631
Q ss_pred CC--c-----chhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 76 PN--V-----DWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 76 ~~--~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
.. . ..........+.+|+.++..+++.+... + .+++++||.. +... +. ..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~-----------~~--~~~~~ 145 (235)
T PRK09009 81 QDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSIS-----------DN--RLGGW 145 (235)
T ss_pred cccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--cccc-----------cC--CCCCc
Confidence 10 0 0112345577889999888887777542 2 3577887632 2111 00 11234
Q ss_pred CchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC
Q 022112 144 SFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
..|+.+|...+.+.+.+... ..+|+..+..+... ..+...+.... ....+...+|+|++++.++...
T Consensus 146 ~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~--t~~~~~~~~~~----~~~~~~~~~~~a~~~~~l~~~~ 217 (235)
T PRK09009 146 YSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTD--TALSKPFQQNV----PKGKLFTPEYVAQCLLGIIANA 217 (235)
T ss_pred chhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEccccee--cCCCcchhhcc----ccCCCCCHHHHHHHHHHHHHcC
Confidence 68999999999988765422 24554444332110 11111111110 1233567899999999988764
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=105.01 Aligned_cols=203 Identities=11% Similarity=0.017 Sum_probs=121.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh----cCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA----VKPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~----~~~d 64 (302)
|.+.++|||| |+||+++++.|. +|++|++ +.+|++|.+++.++++. .++|
T Consensus 1 ~~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 1 MKEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CCCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 3457899997 689999999996 7888775 56789998888877764 2689
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCC-C-CCCCCCCC--
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLG-S-GIGFKEED-- 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~-~-~~~~~e~~-- 137 (302)
++||+||... ...++...+++|+.++.++++++... +.+.|++||............. + ...++..+
T Consensus 79 ~li~nAG~~~------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (275)
T PRK06940 79 GLVHTAGVSP------SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELL 152 (275)
T ss_pred EEEECCCcCC------chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccc
Confidence 9999999652 23567889999999999999988753 2346777776432211000000 0 00000000
Q ss_pred ------C--CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-----chhhHHHHhccccccccc
Q 022112 138 ------T--PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-----PRNFITKITRYEKVVNIP 196 (302)
Q Consensus 138 ------~--~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~ 196 (302)
+ ..+....|+.+|...+.+.+.++.. ..+.|+++..+-... .......+... . ..
T Consensus 153 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~---~-p~ 228 (275)
T PRK06940 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAK---S-PA 228 (275)
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh---C-Cc
Confidence 0 0012368999999998887665322 334444443321000 00011111110 0 11
Q ss_pred CCcccHhhHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 197 NSMTILDELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
.-+...+|+|.+++.++... ..| .+.+.++.
T Consensus 229 ~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 229 GRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred ccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 23567899999999888642 233 66666553
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.1e-12 Score=105.11 Aligned_cols=195 Identities=10% Similarity=0.023 Sum_probs=123.2
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc----
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
.+++|||||+ +-||+.++++|+++|++|++ +.+|++|++++.++++..
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 85 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQKW 85 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHHc
Confidence 4589999986 79999999999999988753 457888888887766543
Q ss_pred -CCCEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 -~~d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|++||+||... .+..+....++...+++|+.++..+++++... +.++|++||.....
T Consensus 86 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~------------ 153 (258)
T PRK07370 86 GKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR------------ 153 (258)
T ss_pred CCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc------------
Confidence 7899999999652 01112234567788999999998888876542 34688888853221
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch--hh--HHHHhcccccccccCCcccHhhH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR--NF--ITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~--~~--~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+.+....|+.+|...+.+.+.+... ..+|+..+..+....+. .+ ...............-+...+|+
T Consensus 154 ------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dv 227 (258)
T PRK07370 154 ------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPLRRTVTQTEV 227 (258)
T ss_pred ------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCcCcCCCHHHH
Confidence 1123468999999999998776432 34555544432211110 00 00000000000011235567999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+.++..++... ..| ++.+.++
T Consensus 228 a~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 228 GNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred HHHHHHHhChhhccccCcEEEECCc
Confidence 99999988742 223 5555544
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=105.09 Aligned_cols=193 Identities=18% Similarity=0.180 Sum_probs=125.9
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+ +-||..+++.|+++|++|++ +.+|++|+++++++++.. ++
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 89 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGKL 89 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence 3589999997 79999999999999999865 567888888887766542 68
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||.... +..+....+....+++|+.++..+++.+... +.++|++||.....
T Consensus 90 D~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~--------------- 154 (272)
T PRK08159 90 DFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK--------------- 154 (272)
T ss_pred cEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc---------------
Confidence 999999996520 1112234577889999999999999887653 33588888743211
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch-----hh--HHHHhcccccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR-----NF--ITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~-----~~--~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+.|....|+.+|...+.+.+.++.. ..+|+..+..+...... .+ ....... .. . ..-+...+|+
T Consensus 155 ---~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~-~~-p-~~r~~~peev 228 (272)
T PRK08159 155 ---VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEY-NA-P-LRRTVTIEEV 228 (272)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHh-CC-c-ccccCCHHHH
Confidence 1123468999999999988776432 44565554432211100 00 0000000 00 1 1224678999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
|++++.++... ..| .+.+.++.
T Consensus 229 A~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 229 GDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred HHHHHHHhCccccCccceEEEECCCc
Confidence 99999988742 234 66666653
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=104.81 Aligned_cols=192 Identities=12% Similarity=0.055 Sum_probs=124.6
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+.+|||||+ +.||..+++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~i 84 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGKI 84 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3589999997 78999999999999998765 467888888877766532 78
Q ss_pred CEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||... .+..+....+....+++|+.++..+.+++... +.++|++||.....
T Consensus 85 DilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------------- 149 (274)
T PRK08415 85 DFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------------- 149 (274)
T ss_pred CEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc---------------
Confidence 99999999642 01112334567889999999998888877643 34688888753211
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHH------hcc-cccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKI------TRY-EKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~------~~~-~~~~~~~~~~i~v~D~ 205 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+..+.... .+...+ ... ..... ..-+...+|+
T Consensus 150 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T--~~~~~~~~~~~~~~~~~~~~p-l~r~~~pedv 223 (274)
T PRK08415 150 ---YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKT--LAASGIGDFRMILKWNEINAP-LKKNVSIEEV 223 (274)
T ss_pred ---CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccc--HHHhccchhhHHhhhhhhhCc-hhccCCHHHH
Confidence 1123368999999999998776533 445655544322111 111000 000 00000 1234678999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
|.+++.++... ..| .+.+.++
T Consensus 224 a~~v~fL~s~~~~~itG~~i~vdGG 248 (274)
T PRK08415 224 GNSGMYLLSDLSSGVTGEIHYVDAG 248 (274)
T ss_pred HHHHHHHhhhhhhcccccEEEEcCc
Confidence 99999988642 234 5666655
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-11 Score=103.35 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=124.9
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+.+|||||++ -||..+++.|+++|++|++ +.+|++|++++.++++.. ++
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 87 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGSF 87 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 45799999997 7999999999999998765 357899988877766532 68
Q ss_pred CEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+|+... .+..+....++...+++|+.++..+++++... +.++|++||.....
T Consensus 88 DilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~--------------- 152 (260)
T PRK06603 88 DFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK--------------- 152 (260)
T ss_pred cEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc---------------
Confidence 99999998642 01112344577889999999999888876432 34688888854321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch--------hhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR--------NFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+.......+. .....+... .. ..-+...+|
T Consensus 153 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---~p-~~r~~~ped 225 (260)
T PRK06603 153 ---VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAAT---AP-LKRNTTQED 225 (260)
T ss_pred ---CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhc---CC-cCCCCCHHH
Confidence 1123368999999999988776433 45666555443221110 011111100 01 123567899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+|++++.++... ..| .+.+.++
T Consensus 226 va~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 226 VGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred HHHHHHHHhCcccccCcceEEEeCCc
Confidence 999999988742 233 5555554
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=103.51 Aligned_cols=191 Identities=11% Similarity=0.070 Sum_probs=120.9
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++||||| ++.||.++++.|+++|++|++ +.+|++|+++++++++.. ++
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 85 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDGL 85 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 358999997 679999999999999998765 578999998887776532 79
Q ss_pred CEEEEccccCCCC----C-c-chhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP----N-V-DWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 64 d~Vi~~a~~~~~~----~-~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
|++||+||..... . . ......+...+++|+.++..+.+++.. .+.++|++||...+.
T Consensus 86 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~------------- 152 (261)
T PRK08690 86 DGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR------------- 152 (261)
T ss_pred cEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc-------------
Confidence 9999999976210 0 0 012234566778899888777776543 233588888754322
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--------hhhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--------RNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+.|....|+.+|...+.+.+.++.. ..+|+..+..+....+ ......+... . ...-+...
T Consensus 153 -----~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~--~--p~~r~~~p 223 (261)
T PRK08690 153 -----AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAH--N--PLRRNVTI 223 (261)
T ss_pred -----CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhc--C--CCCCCCCH
Confidence 1123468999999999887765322 4455555433221111 0011111110 0 11235678
Q ss_pred hhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 203 DELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 203 ~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+|+|++++.++... ..| ++.+.++
T Consensus 224 eevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 224 EEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred HHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 99999999998752 223 5555554
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-11 Score=103.39 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=117.5
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+ +.||..++++|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~l 89 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRL 89 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCC
Confidence 4689999998 48999999999999998765 567888888877666532 68
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+|+.... +..+....++...+++|+.++..+++.+... +.++|++||.....
T Consensus 90 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~--------------- 154 (258)
T PRK07533 90 DFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK--------------- 154 (258)
T ss_pred CEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc---------------
Confidence 999999996420 0112234567889999999999998877543 33578888743211
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--------hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--------RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.+... ..+|+..+.......+ ..+...+... .. ..-+...+|
T Consensus 155 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~---~p-~~r~~~p~d 227 (258)
T PRK07533 155 ---VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAER---AP-LRRLVDIDD 227 (258)
T ss_pred ---CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhc---CC-cCCCCCHHH
Confidence 1123368999999999988765432 3455544333211010 0111111110 01 123567899
Q ss_pred HHHHHHHHHhc
Q 022112 205 LLPISIEMAKR 215 (302)
Q Consensus 205 ~a~~~~~~~~~ 215 (302)
++.+++.++..
T Consensus 228 va~~~~~L~s~ 238 (258)
T PRK07533 228 VGAVAAFLASD 238 (258)
T ss_pred HHHHHHHHhCh
Confidence 99999998864
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=102.49 Aligned_cols=269 Identities=12% Similarity=0.052 Sum_probs=166.2
Q ss_pred cEEEEEcCCcchHHHHHH-----HHHhCC----CcEEEeecCCCChhhHHHHHhhc----CCCEEEEccccCC-CCCcch
Q 022112 15 LKFLIYGRTGWIGGLLGK-----LCQAQS----IDFTYGSGRLENRASLEADIAAV----KPTHVFNAAGVTG-RPNVDW 80 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~-----~L~~~g----~~V~~~~~dl~~~~~~~~~~~~~----~~d~Vi~~a~~~~-~~~~~~ 80 (302)
.+.++-+++|+|+.+|.. ++-+.+ |+|+++.+.-....-.-..++.. .|+.++++++... .|-..|
T Consensus 13 r~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~ritw~el~~~Gip~sc~a~vna~g~n~l~P~rRW 92 (315)
T KOG3019|consen 13 RDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKARITWPELDFPGIPISCVAGVNAVGNNALLPIRRW 92 (315)
T ss_pred ccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCcccccchhcCCCCceehHHHHhhhhhhccCchhhc
Confidence 367788999999988876 444444 88888666543322211122211 3455555555331 112334
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhC--Ce-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRDKG--LI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELL 157 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~ 157 (302)
+..-..+.+-..+..+..++++..... .| +|..|..++|-... ..-|+|++..... +....-...-|..+
T Consensus 93 sp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~------s~eY~e~~~~qgf-d~~srL~l~WE~aA 165 (315)
T KOG3019|consen 93 SPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSE------SQEYSEKIVHQGF-DILSRLCLEWEGAA 165 (315)
T ss_pred CHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccc------ccccccccccCCh-HHHHHHHHHHHHHh
Confidence 444555666666677888999888764 23 99999999998654 3446666655322 33333223333333
Q ss_pred Hhh---cCceEEeeecccCCCCCCchhhHH--HHhcccccc--cccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCcc
Q 022112 158 KNF---ENVCTLRVRMPISSDLSNPRNFIT--KITRYEKVV--NIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVV 229 (302)
Q Consensus 158 ~~~---~~~~~lR~~~v~g~~~~~~~~~~~--~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~ 229 (302)
..- ++..++|.+.|.|.+..-...++. ++-.|.+.- .++.+|||++|++..+..+++++ ..|+.|-..++++
T Consensus 166 ~~~~~~~r~~~iR~GvVlG~gGGa~~~M~lpF~~g~GGPlGsG~Q~fpWIHv~DL~~li~~ale~~~v~GViNgvAP~~~ 245 (315)
T KOG3019|consen 166 LKANKDVRVALIRIGVVLGKGGGALAMMILPFQMGAGGPLGSGQQWFPWIHVDDLVNLIYEALENPSVKGVINGVAPNPV 245 (315)
T ss_pred hccCcceeEEEEEEeEEEecCCcchhhhhhhhhhccCCcCCCCCeeeeeeehHHHHHHHHHHHhcCCCCceecccCCCcc
Confidence 222 334899999999975422222222 333344432 47889999999999999999984 6799999999999
Q ss_pred CHHHHHHHHHhhcCCCCc--ccccccccc-ceeeecCC-CCCccCchhHHHhCC---CcchHHHHHHHHH
Q 022112 230 SHNEILEMYRQYIDPNFT--WKNFTLEEQ-AKVIVAPR-SNNELDASKLKTEFP---ELLSIKESLIKYV 292 (302)
Q Consensus 230 s~~e~~~~~~~~~g~~~~--~~~~~~~~~-~~~~~~~~-~~~~~d~~k~~~~lg---~~~~~~e~i~~~~ 292 (302)
+..|+.+.+..+++.+.- ..++..... +....... ....+-..|+.+ +| .+|.+.+++ +++
T Consensus 246 ~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral~-~Gf~f~yp~vk~Al-~~i 313 (315)
T KOG3019|consen 246 RNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRALE-LGFEFKYPYVKDAL-RAI 313 (315)
T ss_pred chHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhHhh-cCceeechHHHHHH-HHH
Confidence 999999999999998742 222221111 10110000 234556677765 56 789999999 554
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=106.12 Aligned_cols=201 Identities=11% Similarity=-0.009 Sum_probs=119.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
|++++|||||++.||.++++.|+++| ++|++ +.+|+++.+++.+++.+. +
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45689999999999999999999999 88766 357899998887776542 6
Q ss_pred CCEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHH----Hh---CCeEEEEcCCccccCCC----CCCCC-
Q 022112 63 PTHVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCR----DK---GLILINYATGCIFEYDS----GHPLG- 128 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~---~~~~v~~SS~~vy~~~~----~~~~~- 128 (302)
+|++||+||...... ...........+++|+.++..+.+.+. +. ..++|++||...+.... +.+.+
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 999999999642100 112345667889999999877766553 33 24799999986543210 00000
Q ss_pred -C----------CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC----c-----eEEeeecccCCCCCCc-hhhHHHHh
Q 022112 129 -S----------GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN----V-----CTLRVRMPISSDLSNP-RNFITKIT 187 (302)
Q Consensus 129 -~----------~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~----~-----~~lR~~~v~g~~~~~~-~~~~~~~~ 187 (302)
+ ..++.+..+. .+...|+.||.+...+.+.+.. . ..++|+++...+.... ......+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~~ 240 (314)
T TIGR01289 162 GDLSGLAAGFKAPIAMIDGKEF-KGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTLF 240 (314)
T ss_pred cccccccccCCCcccccCCCCc-chhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHHH
Confidence 0 0001111112 2336799999997766554421 1 4456666543222110 00111100
Q ss_pred cccccccccCCcccHhhHHHHHHHHHhc
Q 022112 188 RYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 188 ~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.... ......+...++.++.++.++..
T Consensus 241 ~~~~-~~~~~~~~~~~~~a~~l~~~~~~ 267 (314)
T TIGR01289 241 PPFQ-KYITKGYVSEEEAGERLAQVVSD 267 (314)
T ss_pred HHHH-HHHhccccchhhhhhhhHHhhcC
Confidence 0000 00011245788888888887764
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=103.01 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=122.6
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++++||||++ -||+.+++.|+++|++|++ +.+|++|++++++++++. ++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 85 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPKF 85 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCCC
Confidence 35899999985 8999999999999998875 457888988887776532 68
Q ss_pred CEEEEccccCCCCC------cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN------VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 64 d~Vi~~a~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
|++||+||...... .+.....+...+++|+.+...+.+++... +-++|++||.....
T Consensus 86 D~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-------------- 151 (262)
T PRK07984 86 DGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-------------- 151 (262)
T ss_pred CEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC--------------
Confidence 99999999642100 01123456677889999888888776532 33588887754211
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHH------HHhcccccccccCCcccHhhH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFIT------KITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~------~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+....... .+.. .............-+...+|+
T Consensus 152 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T--~~~~~~~~~~~~~~~~~~~~p~~r~~~pedv 225 (262)
T PRK07984 152 ----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRT--LAASGIKDFRKMLAHCEAVTPIRRTVTIEDV 225 (262)
T ss_pred ----CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccc--hHHhcCCchHHHHHHHHHcCCCcCCCCHHHH
Confidence 1123368999999999998776432 456665544321111 1110 111000000012345678999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+.+++.++... ..| .+.+.++
T Consensus 226 a~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 226 GNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred HHHHHHHcCcccccccCcEEEECCC
Confidence 99999988752 233 5555554
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-11 Score=102.32 Aligned_cols=193 Identities=9% Similarity=-0.017 Sum_probs=122.0
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhh-----c
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAA-----V 61 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~-----~ 61 (302)
.++++||||+ +-||.++++.|+++|++|++ +.+|++|++++++++++ -
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 86 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEVG 86 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 3589999997 89999999999999988764 45788888887776653 2
Q ss_pred CCCEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+|+.... +..+.........+++|+.+...+++++... +.++|++||....-
T Consensus 87 ~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------- 153 (257)
T PRK08594 87 VIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER------------- 153 (257)
T ss_pred CccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc-------------
Confidence 68999999986420 1112233455677889999888877776542 34688998854211
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHH------hcccccccccCCcccHhh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKI------TRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~------~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+.......+ +.... ............+...+|
T Consensus 154 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~--~~~~~~~~~~~~~~~~~~~p~~r~~~p~~ 226 (257)
T PRK08594 154 -----VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTL--SAKGVGGFNSILKEIEERAPLRRTTTQEE 226 (257)
T ss_pred -----CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCH--hHhhhccccHHHHHHhhcCCccccCCHHH
Confidence 1123368999999999998776432 3466655543221111 11110 000000000123467899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
++++++.++... ..| .+.+.++
T Consensus 227 va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 227 VGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred HHHHHHHHcCcccccccceEEEECCc
Confidence 999999988642 233 5555554
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-11 Score=100.78 Aligned_cols=193 Identities=13% Similarity=0.079 Sum_probs=122.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-~~d~Vi 67 (302)
.+++|||||+|.||..+++.|+++|++|++ +.+|+++.+++..+++.. ++|++|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~lv 86 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDILV 86 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence 368999999999999999999999988766 456888888888877654 699999
Q ss_pred EccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+.... +.......+....+++|+.+...+++++. +.+ .++|++||..... +.+
T Consensus 87 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~------------------~~~ 148 (259)
T PRK06125 87 NNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGEN------------------PDA 148 (259)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccC------------------CCC
Confidence 99986521 11122345667889999999988888763 322 3588887753211 112
Q ss_pred CCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccc------------cc-cc-ccCCcccHhh
Q 022112 142 VGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYE------------KV-VN-IPNSMTILDE 204 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~------------~~-~~-~~~~~i~v~D 204 (302)
....|+.+|...+.+++++... ..+|...+..+.. ...++..+.... .. .. ...-+...+|
T Consensus 149 ~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (259)
T PRK06125 149 DYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPV--ATDRMLTLLKGRARAELGDESRWQELLAGLPLGRPATPEE 226 (259)
T ss_pred CchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcc--ccHHHHHHHHhhhhcccCCHHHHHHHhccCCcCCCcCHHH
Confidence 2357899999999988776432 3344433322111 111111111000 00 00 1123567899
Q ss_pred HHHHHHHHHhcC---CCC-eEEecCC
Q 022112 205 LLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+|++++.++... ..| .+.+.++
T Consensus 227 va~~~~~l~~~~~~~~~G~~i~vdgg 252 (259)
T PRK06125 227 VADLVAFLASPRSGYTSGTVVTVDGG 252 (259)
T ss_pred HHHHHHHHcCchhccccCceEEecCC
Confidence 999998888642 233 5666655
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-11 Score=100.90 Aligned_cols=191 Identities=10% Similarity=0.052 Sum_probs=123.2
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++||||| ++-||..+++.|+++|++|++ +.+|++|++++.++++.. ++
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDGL 85 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCCC
Confidence 458999996 679999999999999998864 467888888887776542 68
Q ss_pred CEEEEccccCCCC----C-c-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP----N-V-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 64 d~Vi~~a~~~~~~----~-~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
|++||+||..... . . .....++...+++|+.++..+.+++... +.++|++||.....
T Consensus 86 D~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~-------------- 151 (260)
T PRK06997 86 DGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER-------------- 151 (260)
T ss_pred cEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc--------------
Confidence 9999999975210 0 0 1233467788999999998888887653 23588888754211
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--------hhhHHHHhcccccccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--------RNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+........ ......+... .. ..-+...+
T Consensus 152 ----~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~---~p-~~r~~~pe 223 (260)
T PRK06997 152 ----VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESN---AP-LRRNVTIE 223 (260)
T ss_pred ----CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhc---Cc-ccccCCHH
Confidence 1123367999999999988775432 3455554433211110 0000011100 01 12356789
Q ss_pred hHHHHHHHHHhcC---CC-CeEEecCC
Q 022112 204 ELLPISIEMAKRN---LT-GIWNFTNP 226 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~-~~~~~~~~ 226 (302)
|+++++..++... .. .++.+.++
T Consensus 224 dva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 224 EVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred HHHHHHHHHhCccccCcceeEEEEcCC
Confidence 9999999988752 22 35666554
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=112.57 Aligned_cols=182 Identities=18% Similarity=0.158 Sum_probs=121.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+++|||||++.||..+++.|+++|++|++ +.+|+++++++.++++.. ++|++|
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~li 84 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVLV 84 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999999999876 568899998887777642 699999
Q ss_pred EccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 68 ~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|+||... .+..+....++...+++|+.++..+++++... +.++|++||.......
T Consensus 85 ~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~---------------- 148 (520)
T PRK06484 85 NNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL---------------- 148 (520)
T ss_pred ECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC----------------
Confidence 9998631 11122345577889999999999988888653 2379999886543211
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-----cc--cccCCcccHhhHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-----VV--NIPNSMTILDELLPI 208 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----~~--~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.+... ..+|...+..+.. ...+...+..... .. .....+...+|++.+
T Consensus 149 --~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~ 224 (520)
T PRK06484 149 --PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYV--RTQMVAELERAGKLDPSAVRSRIPLGRLGRPEEIAEA 224 (520)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCc--CchhhhhhcccchhhhHHHHhcCCCCCCcCHHHHHHH
Confidence 12368999999999988765432 3455444432211 1111111110000 00 011234578999999
Q ss_pred HHHHHhc
Q 022112 209 SIEMAKR 215 (302)
Q Consensus 209 ~~~~~~~ 215 (302)
+..++..
T Consensus 225 v~~l~~~ 231 (520)
T PRK06484 225 VFFLASD 231 (520)
T ss_pred HHHHhCc
Confidence 9988764
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-11 Score=101.41 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=117.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++.|+|||||..||.+++.+|.++|..++. +.+|++|.+++.+++++. +
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~ 91 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGR 91 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999986333 679999999988776432 8
Q ss_pred CCEEEEccccCCCCCcc-hhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVD-WCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||.||..-..... ....+....+++|+.|+..+.+++- +.+ -++|.+||..-+-
T Consensus 92 vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~---------------- 155 (282)
T KOG1205|consen 92 VDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM---------------- 155 (282)
T ss_pred CCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc----------------
Confidence 99999999987311111 1233556789999999888777764 444 5799999965332
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHH--HH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLP--IS 209 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~--~~ 209 (302)
+.|....|..||.+.+.+.+.+... .+++. .+.|+. -...|...-..+.........+...+|++. .+
T Consensus 156 --~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i--~V~PG~-V~Te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (282)
T KOG1205|consen 156 --PLPFRSIYSASKHALEGFFETLRQELIPLGTIIII--LVSPGP-IETEFTGKELLGEEGKSQQGPFLRTEDVADPEAV 230 (282)
T ss_pred --CCCcccccchHHHHHHHHHHHHHHHhhccCceEEE--EEecCc-eeecccchhhccccccccccchhhhhhhhhHHHH
Confidence 1223358999999999987765432 33443 222222 223333333333221122333444566644 55
Q ss_pred HHHHhcC
Q 022112 210 IEMAKRN 216 (302)
Q Consensus 210 ~~~~~~~ 216 (302)
..++..+
T Consensus 231 ~~~i~~~ 237 (282)
T KOG1205|consen 231 AYAISTP 237 (282)
T ss_pred HHHHhcC
Confidence 5555543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-11 Score=100.13 Aligned_cols=192 Identities=11% Similarity=0.046 Sum_probs=120.7
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhh-----cCC
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAA-----VKP 63 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~-----~~~ 63 (302)
.++++|||| ++.||.++++.|+++|++|++ +.+|++|++++.++++. .++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~i 86 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDGL 86 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999 899999999999999988765 45778888887766653 269
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||.... +..+...++....+++|+.++..+++.+... +.++|++|+....
T Consensus 87 D~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~---------------- 150 (256)
T PRK07889 87 DGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV---------------- 150 (256)
T ss_pred cEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc----------------
Confidence 999999997520 0112233456677999999998888777542 3357777653211
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHh------cc-cccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKIT------RY-EKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~------~~-~~~~~~~~~~i~v~D~ 205 (302)
..+....|+.+|...+.+.+.++.. ..+|+..+....... .+...+. .. .......+.+...+|+
T Consensus 151 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T--~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~ev 225 (256)
T PRK07889 151 ---AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRT--LAAKAIPGFELLEEGWDERAPLGWDVKDPTPV 225 (256)
T ss_pred ---cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccC--hhhhcccCcHHHHHHHHhcCccccccCCHHHH
Confidence 1123357999999999988776432 456665544322111 1111110 00 0000111235678999
Q ss_pred HHHHHHHHhcC---CCC-eEEecCC
Q 022112 206 LPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
|++++.++... ..| ++.+.++
T Consensus 226 A~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 226 ARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred HHHHHHHhCcccccccceEEEEcCc
Confidence 99999988752 234 5555443
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=106.69 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=111.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCC--hhhHHH---HHhhcC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLEN--RASLEA---DIAAVK 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~--~~~~~~---~~~~~~ 62 (302)
++.++||||||.||++++++|+++|++|++ +.+|+++ .+.+.+ .+...+
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~d 132 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLD 132 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 568999999999999999999999999887 2345553 222332 333335
Q ss_pred CCEEEEccccCCC---CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR---PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++||+||.... +..+...++....+++|+.++..+.+++.. .+ .++|++||...+..
T Consensus 133 idilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~------------- 199 (320)
T PLN02780 133 VGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVI------------- 199 (320)
T ss_pred ccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccC-------------
Confidence 6799999997521 011223445678899999999998888753 22 45899998754320
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
+..|....|+.+|...+.+.+.+... ..+|+..+..+.. ...+.. . ... ..-....+++|+.++.
T Consensus 200 ---~~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v--~T~~~~-~-~~~-----~~~~~~p~~~A~~~~~ 267 (320)
T PLN02780 200 ---PSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYV--ATKMAS-I-RRS-----SFLVPSSDGYARAALR 267 (320)
T ss_pred ---CCCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCce--ecCccc-c-cCC-----CCCCCCHHHHHHHHHH
Confidence 01123478999999999988775432 3444444332211 011111 0 000 0012467899999998
Q ss_pred HHhc
Q 022112 212 MAKR 215 (302)
Q Consensus 212 ~~~~ 215 (302)
.+.+
T Consensus 268 ~~~~ 271 (320)
T PLN02780 268 WVGY 271 (320)
T ss_pred HhCC
Confidence 8863
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.8e-11 Score=98.12 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=114.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
|.+|||||++.||..++++|. +|++|++ +.+|++|.+++++++++. ++|
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 679999999999999999998 4877665 567888988877766532 689
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHH----HHHh--CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADV----CRDK--GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~----~~~~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||....... +....+......+|+.+...++.. +++. +.++|++||...+-.
T Consensus 80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~---------------- 143 (246)
T PRK05599 80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA---------------- 143 (246)
T ss_pred EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC----------------
Confidence 99999997521100 112223345566777777655444 3333 246899988643221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.+....|+.+|...+.+.+.+... ..+|+..+..+.. ...+. .+.... . -....+|+|++++.++.
T Consensus 144 --~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v--~T~~~----~~~~~~--~-~~~~pe~~a~~~~~~~~ 212 (246)
T PRK05599 144 --RRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFV--IGSMT----TGMKPA--P-MSVYPRDVAAAVVSAIT 212 (246)
T ss_pred --CcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcc--cchhh----cCCCCC--C-CCCCHHHHHHHHHHHHh
Confidence 123368999999998888765432 3456555433211 11111 111100 0 01467999999999998
Q ss_pred cCC-CCeEEecC
Q 022112 215 RNL-TGIWNFTN 225 (302)
Q Consensus 215 ~~~-~~~~~~~~ 225 (302)
++. .+.+.+.+
T Consensus 213 ~~~~~~~~~~~~ 224 (246)
T PRK05599 213 SSKRSTTLWIPG 224 (246)
T ss_pred cCCCCceEEeCc
Confidence 754 34555554
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=95.52 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=93.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-EEE---------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-FTY---------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++||||+|+||.+++++|+++|+. |+. +.+|+++.+.+.+.+... .
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLGP 81 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 6999999999999999999998864 432 557888887777666532 4
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCcc-ccCCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCI-FEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~v-y~~~~~~~~~~~~~~~e~~~~ 139 (302)
+|.|||+|+..... .......++...++.|+.++.++++++++.+.+ +|++||... ++.
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~------------------ 143 (180)
T smart00822 82 LRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGN------------------ 143 (180)
T ss_pred eeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCC------------------
Confidence 79999999965211 112233566788999999999999999876644 788777543 331
Q ss_pred CCCCCchhhhHHHHHHHHHhhc
Q 022112 140 NFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+....|+.+|...+.+++...
T Consensus 144 -~~~~~y~~sk~~~~~~~~~~~ 164 (180)
T smart00822 144 -PGQANYAAANAFLDALAAHRR 164 (180)
T ss_pred -CCchhhHHHHHHHHHHHHHHH
Confidence 123689999999999986543
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-11 Score=94.10 Aligned_cols=129 Identities=22% Similarity=0.209 Sum_probs=99.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++||||+|-||..++++|+++|. .|++ +.+|+++.++++..++.. .
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999954 4433 678888888877776643 7
Q ss_pred CCEEEEccccCCCCCcch-hhhhHHHHHHHhHHHHHHHHHHHHHh-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDW-CESHKVETIRTNVVGTLTLADVCRDK-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|++||+|+....+.... ..++....+.+|+.+...+.+++... +.++|++||....- +.
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------------~~ 142 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVR------------------GS 142 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTS------------------SS
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhcc------------------CC
Confidence 899999999874222222 34567789999999999999999884 33589998865432 12
Q ss_pred CCCCchhhhHHHHHHHHHhhc
Q 022112 141 FVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
|....|+.+|...+.+++.++
T Consensus 143 ~~~~~Y~askaal~~~~~~la 163 (167)
T PF00106_consen 143 PGMSAYSASKAALRGLTQSLA 163 (167)
T ss_dssp TTBHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHH
Confidence 344789999999999988764
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=97.92 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=114.1
Q ss_pred EEEEEcCCcchHHHHHHHHHh----CCCcEEE--------------------------eecCCCChhhHHHHHhhc----
Q 022112 16 KFLIYGRTGWIGGLLGKLCQA----QSIDFTY--------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~----~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
.+|||||+|.||.+++++|++ .|++|++ +.+|+++.+++.++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 589999999999999999987 6777655 567899988877766432
Q ss_pred -----CCCEEEEccccCCC-CCcc---hhhhhHHHHHHHhHHHHHHHHHHHHHh-----C--CeEEEEcCCccccCCCCC
Q 022112 62 -----KPTHVFNAAGVTGR-PNVD---WCESHKVETIRTNVVGTLTLADVCRDK-----G--LILINYATGCIFEYDSGH 125 (302)
Q Consensus 62 -----~~d~Vi~~a~~~~~-~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~--~~~v~~SS~~vy~~~~~~ 125 (302)
+.|+|||+||.... +... ....+....+++|+.++..+.+.+.+. + .++|++||...+..
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~---- 157 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP---- 157 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC----
Confidence 23699999996421 0011 123466789999999988777766432 2 35888888654321
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc--cc-c---c--c
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY--EK-V---V--N 194 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~--~~-~---~--~ 194 (302)
.+....|+.+|...+.+.+.+... ..+|+..+..+.. ...+....... .+ . . .
T Consensus 158 --------------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~ 221 (256)
T TIGR01500 158 --------------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVL--DTDMQQQVREESVDPDMRKGLQEL 221 (256)
T ss_pred --------------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHhcCChhHHHHHHHH
Confidence 123368999999999988775432 3455555432211 11122221110 00 0 0 0
Q ss_pred -ccCCcccHhhHHHHHHHHHhc
Q 022112 195 -IPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 195 -~~~~~i~v~D~a~~~~~~~~~ 215 (302)
...-+...+|+|.+++.++++
T Consensus 222 ~~~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 222 KAKGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred HhcCCCCCHHHHHHHHHHHHhc
Confidence 012356789999999998864
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-10 Score=93.94 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=123.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+..+|||||++.+|+.++.+|+++|..+.. ..+|+++.+++....++. ++|+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~I 117 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVDI 117 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCceE
Confidence 458999999999999999999999986544 789999999877665543 7899
Q ss_pred EEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHH----HHh-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVC----RDK-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~----~~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+|+.||....... +-..+.-+..+++|+.+.....++. .+. ..++|.++|..-+-+
T Consensus 118 LVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g------------------ 179 (300)
T KOG1201|consen 118 LVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFG------------------ 179 (300)
T ss_pred EEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccC------------------
Confidence 9999997731111 1233455678899998876655544 442 346888888643221
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
.+....|..||..+.-+.+++... ..+|.+.++..-. . ..++.. ........+.+..+.+|+.++.++
T Consensus 180 ~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i-~-Tgmf~~----~~~~~~l~P~L~p~~va~~Iv~ai 253 (300)
T KOG1201|consen 180 PAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFI-N-TGMFDG----ATPFPTLAPLLEPEYVAKRIVEAI 253 (300)
T ss_pred CccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeec-c-ccccCC----CCCCccccCCCCHHHHHHHHHHHH
Confidence 123478999999987776554321 4477766655311 1 222222 222233456778899999999988
Q ss_pred hcCCCCeE
Q 022112 214 KRNLTGIW 221 (302)
Q Consensus 214 ~~~~~~~~ 221 (302)
.....+.+
T Consensus 254 ~~n~~~~~ 261 (300)
T KOG1201|consen 254 LTNQAGLL 261 (300)
T ss_pred HcCCcccc
Confidence 86555443
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-10 Score=86.89 Aligned_cols=176 Identities=17% Similarity=0.144 Sum_probs=114.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNV 78 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~ 78 (302)
|||.|+||||.+|+.|++.+.++||+|++ ++.|+.|++++.+.+. +.|+||..-+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~~---- 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAGA---- 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhc--CCceEEEeccCCC----
Confidence 79999999999999999999999999998 5677888888888888 8999998766441
Q ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 79 DWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 79 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
+ +..... ......+++..+..+++ ++...... -|=+.... =.+.|..|...|...+..+|.+
T Consensus 75 --~--~~~~~~---~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~r---------LvD~p~fP~ey~~~A~~~ae~L 138 (211)
T COG2910 75 --S--DNDELH---SKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTR---------LVDTPDFPAEYKPEALAQAEFL 138 (211)
T ss_pred --C--ChhHHH---HHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCce---------eecCCCCchhHHHHHHHHHHHH
Confidence 1 111111 12245688888887775 55554432 23222111 1133333447788888888854
Q ss_pred --HHh--hcCceEEeeecccCCCCCCchhhHHHHhcccc-ccc-ccCCcccHhhHHHHHHHHHhcC
Q 022112 157 --LKN--FENVCTLRVRMPISSDLSNPRNFITKITRYEK-VVN-IPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 157 --~~~--~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
++. ..+|+.+-|+..|-|+. ...+|. +.+.. ..+ ...++|..+|.|-+++-.++++
T Consensus 139 ~~Lr~~~~l~WTfvSPaa~f~PGe-rTg~yr---lggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~ 200 (211)
T COG2910 139 DSLRAEKSLDWTFVSPAAFFEPGE-RTGNYR---LGGDQLLVNAKGESRISYADYAIAVLDELEKP 200 (211)
T ss_pred HHHhhccCcceEEeCcHHhcCCcc-ccCceE---eccceEEEcCCCceeeeHHHHHHHHHHHHhcc
Confidence 322 24567777777666532 111110 01111 112 3458899999999999999985
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=98.47 Aligned_cols=102 Identities=14% Similarity=0.013 Sum_probs=76.4
Q ss_pred EEEcCCcchHHHHHHHHHhCC-CcEEE------------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 18 LIYGRTGWIGGLLGKLCQAQS-IDFTY------------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 18 lItGatG~iG~~l~~~L~~~g-~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
|||||++.||.+++++|+++| ++|++ +.+|+++.+++.++++.. .+|++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999 88765 367899988887766532 689999
Q ss_pred EccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC---CeEEEEcCCccc
Q 022112 68 NAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG---LILINYATGCIF 119 (302)
Q Consensus 68 ~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~---~~~v~~SS~~vy 119 (302)
|+||.... +............+++|+.++..+.+.+. +.+ .++|++||...+
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~ 141 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN 141 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence 99997421 11122345677899999999877766543 333 479999987543
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.4e-10 Score=85.99 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=128.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
.+..+||||+..||+++++.|.++|++|.+ +.+|.++.+++...+++. .|++
T Consensus 14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv 93 (256)
T KOG1200|consen 14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV 93 (256)
T ss_pred cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence 457999999999999999999999999887 788888888877655543 7999
Q ss_pred EEEccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-------CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-------GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+++|||.+. .--..-.+++++..+.+|+.|+..+.+++.+. +..+|.+||. .|.-. .+....
T Consensus 94 lVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI--VGkiG--------N~GQtn 163 (256)
T KOG1200|consen 94 LVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI--VGKIG--------NFGQTN 163 (256)
T ss_pred EEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh--hcccc--------cccchh
Confidence 999999883 11112356688999999999998888887654 3469999984 33211 001111
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCceEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
-.-.....-|.+|.++.++.+...+.-.+-|+++--|-.. -|+..+..++..-+. +-+-..+|+|..++.+....
T Consensus 164 YAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPm----gr~G~~EevA~~V~fLAS~~ 239 (256)
T KOG1200|consen 164 YAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPM----GRLGEAEEVANLVLFLASDA 239 (256)
T ss_pred hhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCHHHHHHHHccCCc----cccCCHHHHHHHHHHHhccc
Confidence 1001113455667777776665554445555655443221 234455555544332 22335799999998877532
Q ss_pred C----CCeEEecCC
Q 022112 217 L----TGIWNFTNP 226 (302)
Q Consensus 217 ~----~~~~~~~~~ 226 (302)
. +..+.+.++
T Consensus 240 ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 240 SSYITGTTLEVTGG 253 (256)
T ss_pred cccccceeEEEecc
Confidence 1 225666554
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=91.48 Aligned_cols=187 Identities=19% Similarity=0.196 Sum_probs=130.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++++||+.|.||..++++|+++|..+.+ +++|+++..++++.++++ .+
T Consensus 5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~i 84 (261)
T KOG4169|consen 5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGTI 84 (261)
T ss_pred CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCce
Confidence 568999999999999999999999876544 899999999888888765 78
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHH----HHHHHHHHh-CC---eEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTL----TLADVCRDK-GL---ILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~----~ll~~~~~~-~~---~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++|+-||.. ...+++.++.+|+.|.. ..+.+..+. +- -+|.+|| |+|-.
T Consensus 85 DIlINgAGi~-------~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsS--v~GL~------------- 142 (261)
T KOG4169|consen 85 DILINGAGIL-------DDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSS--VAGLD------------- 142 (261)
T ss_pred EEEEcccccc-------cchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecc--ccccC-------------
Confidence 9999999987 36778899999987654 455555543 22 3888888 56622
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCchhhHHHHhcccccc-------c--ccCCccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNPRNFITKITRYEKVV-------N--IPNSMTI 201 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~-------~--~~~~~i~ 201 (302)
|.|....|+.+|.-.-.+.++.++ ..++|+..+..+- ....++..+....... . ....-..
T Consensus 143 ---P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~--t~t~l~~~~~~~~~~~e~~~~~~~~l~~~~~q~ 217 (261)
T KOG4169|consen 143 ---PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGF--TRTDLAENIDASGGYLEYSDSIKEALERAPKQS 217 (261)
T ss_pred ---ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCc--chHHHHHHHHhcCCcccccHHHHHHHHHcccCC
Confidence 223346899999877666666433 3678877766531 2233444443211100 0 1122345
Q ss_pred HhhHHHHHHHHHhcCCCC-eEEecCCC
Q 022112 202 LDELLPISIEMAKRNLTG-IWNFTNPG 227 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~~~-~~~~~~~~ 227 (302)
..+++..++.++|.+.+| +|-+..+.
T Consensus 218 ~~~~a~~~v~aiE~~~NGaiw~v~~g~ 244 (261)
T KOG4169|consen 218 PACCAINIVNAIEYPKNGAIWKVDSGS 244 (261)
T ss_pred HHHHHHHHHHHHhhccCCcEEEEecCc
Confidence 788999999999987776 77777653
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-09 Score=93.91 Aligned_cols=193 Identities=13% Similarity=0.027 Sum_probs=121.2
Q ss_pred cccEEEEEcC--CcchHHHHHHHHHhCCCcEEE------------------------------------eecCC--CCh-
Q 022112 13 KPLKFLIYGR--TGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRL--ENR- 51 (302)
Q Consensus 13 ~~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl--~~~- 51 (302)
+++.+||||| +.-||..+++.|.+.|.+|++ +.+|+ ++.
T Consensus 8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 87 (303)
T PLN02730 8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDTPE 87 (303)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCccc
Confidence 3568999999 799999999999999999876 12355 222
Q ss_pred -----------------hhHHHHHhhc-----CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 022112 52 -----------------ASLEADIAAV-----KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK 106 (302)
Q Consensus 52 -----------------~~~~~~~~~~-----~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~ 106 (302)
+++..+++.. ++|++||+||... .+..+....++...+++|+.++..+++++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~p~ 167 (303)
T PLN02730 88 DVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFGPI 167 (303)
T ss_pred cCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2455444432 6899999997431 12223345678889999999999888887653
Q ss_pred ---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCC
Q 022112 107 ---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG-SFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSN 178 (302)
Q Consensus 107 ---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~ 178 (302)
+.++|++||...... .|.. ..|+.+|...+.+.+.++.. ..+|+..+..+....
T Consensus 168 m~~~G~II~isS~a~~~~------------------~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T 229 (303)
T PLN02730 168 MNPGGASISLTYIASERI------------------IPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGS 229 (303)
T ss_pred HhcCCEEEEEechhhcCC------------------CCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccC
Confidence 347899988643221 1222 37999999999988775432 357776665432211
Q ss_pred chhhHHHH------hccccccccc-CCcccHhhHHHHHHHHHhcC----CCCeEEecCC
Q 022112 179 PRNFITKI------TRYEKVVNIP-NSMTILDELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 179 ~~~~~~~~------~~~~~~~~~~-~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
.+...+ .... ....+ .-+...+|++.+++.++... .+..+.+.++
T Consensus 230 --~~~~~~~~~~~~~~~~-~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l~vdGG 285 (303)
T PLN02730 230 --RAAKAIGFIDDMIEYS-YANAPLQKELTADEVGNAAAFLASPLASAITGATIYVDNG 285 (303)
T ss_pred --chhhcccccHHHHHHH-HhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence 111110 0000 00011 23457899999999988642 2235555554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=93.03 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=94.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----c-CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----V-KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~-~~ 63 (302)
+++++||||++-||..+++.|+++|++|++ +.+|+++.+++.+++++ . ++
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~i 84 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRAP 84 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 458999999999999999999999999877 45788888888766643 2 68
Q ss_pred CEEEEccccCCCC--CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC--CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP--NVDWCESHKVETIRTNVVGTLTLADVC----RDKG--LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||....+ ..+....+....+.+|+.++..+++.+ ++.+ ..+|++||...+
T Consensus 85 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------------- 148 (227)
T PRK08862 85 DVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------------- 148 (227)
T ss_pred CEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------------
Confidence 9999999743111 111222344556677777766655443 3332 358888874321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccC
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPIS 173 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g 173 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~P 184 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVP 184 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEec
Confidence 12367999999999988775432 3455555443
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=90.70 Aligned_cols=121 Identities=11% Similarity=0.096 Sum_probs=81.8
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHh-h
Q 022112 83 SHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN-F 160 (302)
Q Consensus 83 ~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~-~ 160 (302)
.+......+|-....+-.+++++.+++ |+|+|-. -|| -++.-+ ..|-.+|+++|..+.. +
T Consensus 129 gn~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~-d~~----------------~~~~i~-rGY~~gKR~AE~Ell~~~ 190 (283)
T KOG4288|consen 129 GNIILMDRINGTANINAVKAAAKAGVPRFVYISAH-DFG----------------LPPLIP-RGYIEGKREAEAELLKKF 190 (283)
T ss_pred cchHHHHHhccHhhHHHHHHHHHcCCceEEEEEhh-hcC----------------CCCccc-hhhhccchHHHHHHHHhc
Confidence 355667788888888999999999997 8988742 233 122234 5899999999998744 4
Q ss_pred c-CceEEeeecccCCCCCCc-hh-------hHHHHhcccc--------cccccCCcccHhhHHHHHHHHHhcCC-CCeE
Q 022112 161 E-NVCTLRVRMPISSDLSNP-RN-------FITKITRYEK--------VVNIPNSMTILDELLPISIEMAKRNL-TGIW 221 (302)
Q Consensus 161 ~-~~~~lR~~~v~g~~~~~~-~~-------~~~~~~~~~~--------~~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~ 221 (302)
. .-.++||+++||....+. .. .+.+...... .-.....++.++++|.+.+.+++.+. .|++
T Consensus 191 ~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~Gvv 269 (283)
T KOG4288|consen 191 RFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFKGVV 269 (283)
T ss_pred CCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcCcee
Confidence 3 338999999999743222 11 2233333221 11245678999999999999998763 3443
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.2e-11 Score=89.38 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=108.6
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCC--cEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
..||..||.||||..|+.+.+++++.+. .|++ ...|....++....++ ++|+.|.+-|.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~q--g~dV~FcaLgT 93 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQ--GPDVLFCALGT 93 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhc--CCceEEEeecc
Confidence 3567899999999999999999999873 3444 4555556666666666 99999998887
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
+. ...-.+-.+++..+....++++|++.|++ |+..||...-. . ....|-..|.
T Consensus 94 TR------gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~------------------s--SrFlY~k~KG 147 (238)
T KOG4039|consen 94 TR------GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADP------------------S--SRFLYMKMKG 147 (238)
T ss_pred cc------cccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCc------------------c--cceeeeeccc
Confidence 62 11113345566677778899999999998 88888854311 1 2267889999
Q ss_pred HHHHHHHh--hcCceEEeeecccCCCCC-CchhhHHHHhcc
Q 022112 152 MVEELLKN--FENVCTLRVRMPISSDLS-NPRNFITKITRY 189 (302)
Q Consensus 152 ~~E~~~~~--~~~~~~lR~~~v~g~~~~-~~~~~~~~~~~~ 189 (302)
+.|+-+.+ +.+..|+||+.+.+.... .+..|+.++..+
T Consensus 148 EvE~~v~eL~F~~~~i~RPG~ll~~R~esr~geflg~~~~a 188 (238)
T KOG4039|consen 148 EVERDVIELDFKHIIILRPGPLLGERTESRQGEFLGNLTAA 188 (238)
T ss_pred hhhhhhhhccccEEEEecCcceecccccccccchhhheehh
Confidence 99998755 456699999999986543 345676666544
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.8e-10 Score=94.91 Aligned_cols=185 Identities=11% Similarity=0.026 Sum_probs=114.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------------eecCCCChhhHHHHHh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------------GSGRLENRASLEADIA 59 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------------~~~dl~~~~~~~~~~~ 59 (302)
.+++|||||++.||.++++.|++.|++|++ +.+|++++++++.+++
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 87 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVE 87 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999999999988765 3467777777776665
Q ss_pred hc-----CCCEEEEcc-ccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCcc-ccCC
Q 022112 60 AV-----KPTHVFNAA-GVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCI-FEYD 122 (302)
Q Consensus 60 ~~-----~~d~Vi~~a-~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~v-y~~~ 122 (302)
+. ++|++||+| +... .+..+....+....+++|+.++..+++++... +.++|++||... ++..
T Consensus 88 ~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~~~ 167 (305)
T PRK08303 88 RIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYNAT 167 (305)
T ss_pred HHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCccccccCc
Confidence 42 689999999 6320 00111223455677888998888777766542 246888888532 2210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhc--ccc----c-
Q 022112 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITR--YEK----V- 192 (302)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~--~~~----~- 192 (302)
+.+....|+.+|.....+.+.++.. ..+|+..+..+.. ...+...... ... .
T Consensus 168 ----------------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v--~T~~~~~~~~~~~~~~~~~~~ 229 (305)
T PRK08303 168 ----------------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWL--RSEMMLDAFGVTEENWRDALA 229 (305)
T ss_pred ----------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCcc--ccHHHHHhhccCccchhhhhc
Confidence 1112357999999999988765433 4566655543211 1112111110 000 0
Q ss_pred -ccccCCcccHhhHHHHHHHHHhcC
Q 022112 193 -VNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 193 -~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
.....-+...+|+|.+++.++...
T Consensus 230 ~~p~~~~~~~peevA~~v~fL~s~~ 254 (305)
T PRK08303 230 KEPHFAISETPRYVGRAVAALAADP 254 (305)
T ss_pred cccccccCCCHHHHHHHHHHHHcCc
Confidence 000122346899999999888643
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=90.18 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=106.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHh-------hcCCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIA-------AVKPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~-------~~~~d~ 65 (302)
+-|||||+....|..|+++|.++|+.|.+ +..|+++++++.++.+ +.+.=.
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gLwg 109 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGLWG 109 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccccee
Confidence 45999999999999999999999999988 6789999999877665 235668
Q ss_pred EEEccccCC-CCCcch-hhhhHHHHHHHhHHHHHHHHHHH----HHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG-RPNVDW-CESHKVETIRTNVVGTLTLADVC----RDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~-~~~~~~-~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+||..+ .+..++ ...+....+++|..|+.++..+. |+..-|+|++||.. | ..+
T Consensus 110 lVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~--G----------------R~~ 171 (322)
T KOG1610|consen 110 LVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVL--G----------------RVA 171 (322)
T ss_pred EEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccc--c----------------Ccc
Confidence 999999553 112333 34588899999999988776665 45566899999953 3 122
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN 178 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~ 178 (302)
.|...+|..||...|.+....... .++-|+ .|-.+...
T Consensus 172 ~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T~l~~ 217 (322)
T KOG1610|consen 172 LPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKTNLAN 217 (322)
T ss_pred CcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccccccCC
Confidence 334589999999999987665432 555555 34444433
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.9e-10 Score=91.75 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=106.5
Q ss_pred HHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc--CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHH
Q 022112 31 GKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV--KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVG 95 (302)
Q Consensus 31 ~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~--~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~ 95 (302)
++.|+++|++|++ +.+|++|.+++.+++++. ++|+|||+||... ...+...+++|+.+
T Consensus 2 a~~l~~~G~~Vv~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~-------~~~~~~~~~vN~~~ 74 (241)
T PRK12428 2 ARLLRFLGARVIGVDRREPGMTLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG-------TAPVELVARVNFLG 74 (241)
T ss_pred hHHHHhCCCEEEEEeCCcchhhhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC-------CCCHHHhhhhchHH
Confidence 5566666666654 578999999998888754 6999999999651 23567899999999
Q ss_pred HHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCC-----CC------CCCCCCCCchhhhHHHHHHHHHhhc
Q 022112 96 TLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFK-----EE------DTPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 96 ~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~-----e~------~~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+..+++.+.+. +.++|++||...|+.....+. .++.. ++ ..+.+....|+.+|...+.+.+.+.
T Consensus 75 ~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la 152 (241)
T PRK12428 75 LRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLEL--HKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQA 152 (241)
T ss_pred HHHHHHHHHHhccCCcEEEEeCcHHhhccccchHH--HHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999998763 347999999887763221110 00000 00 0133445789999999998876655
Q ss_pred -C---c-----eEEeeecccCCCCCCchhhH-HHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 162 -N---V-----CTLRVRMPISSDLSNPRNFI-TKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 162 -~---~-----~~lR~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
. . ..++|+.+..+-........ ..... .... ....+...+|+|++++.++..
T Consensus 153 ~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~-~~~~~~~pe~va~~~~~l~s~ 214 (241)
T PRK12428 153 QPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERVD-SDAK-RMGRPATADEQAAVLVFLCSD 214 (241)
T ss_pred HHhhhccCeEEEEeecCCccCcccccchhhhhhHhhh-hccc-ccCCCCCHHHHHHHHHHHcCh
Confidence 2 1 44555555443110000000 00000 0000 112245689999999988764
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=86.77 Aligned_cols=143 Identities=21% Similarity=0.186 Sum_probs=106.6
Q ss_pred cccEEEEEcC-CcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc------CCCEE
Q 022112 13 KPLKFLIYGR-TGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV------KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGa-tG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~------~~d~V 66 (302)
..++|||||+ .|.||-+|++.|.++|+.|.+ ...|+++++++.++..+. +.|++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 4468999974 699999999999999999998 678888998887766543 67999
Q ss_pred EEccccC-CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVT-GRPNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 67 i~~a~~~-~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
++.||.. ..|..+......+..+++|+.|..++.++.... ...+|+..|..+|-+ .|
T Consensus 86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vp------------------fp 147 (289)
T KOG1209|consen 86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVP------------------FP 147 (289)
T ss_pred EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEec------------------cc
Confidence 9999865 233344455677899999999998888877643 335899888766542 23
Q ss_pred CCCchhhhHHHHHHHHHhhcCc---eEEeeecccC
Q 022112 142 VGSFYSKTKAMVEELLKNFENV---CTLRVRMPIS 173 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g 173 (302)
..+.|..+|++...+.+.+.-. ..+|+.+++-
T Consensus 148 f~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~it 182 (289)
T KOG1209|consen 148 FGSIYSASKAAIHAYARTLRLELKPFGVRVINAIT 182 (289)
T ss_pred hhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecc
Confidence 4578999999998887665321 5566555443
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-09 Score=88.74 Aligned_cols=192 Identities=9% Similarity=-0.003 Sum_probs=118.0
Q ss_pred cccEEEEEcCC--cchHHHHHHHHHhCCCcEEEee--------------------------------------cCCCChh
Q 022112 13 KPLKFLIYGRT--GWIGGLLGKLCQAQSIDFTYGS--------------------------------------GRLENRA 52 (302)
Q Consensus 13 ~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~--------------------------------------~dl~~~~ 52 (302)
+++.+|||||+ .-||+++++.|+++|.+|++.. .|+.+.+
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~ 86 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTPE 86 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCCE
Confidence 34689999995 7899999999999999987731 1222332
Q ss_pred ------------------hHHHHHh----hc-CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 022112 53 ------------------SLEADIA----AV-KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK 106 (302)
Q Consensus 53 ------------------~~~~~~~----~~-~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~ 106 (302)
++++.++ .+ ++|++||+||... .+..+....++...+++|+.++.++++++...
T Consensus 87 ~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p~ 166 (299)
T PRK06300 87 DVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGPI 166 (299)
T ss_pred EeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2333333 22 6999999997531 11122344577889999999999999888753
Q ss_pred ---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCC
Q 022112 107 ---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG-SFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSN 178 (302)
Q Consensus 107 ---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~ 178 (302)
+.++|.+||....-. .|.. ..|+.+|...+.+.+.++.. ..+|+..+.......
T Consensus 167 m~~~G~ii~iss~~~~~~------------------~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T 228 (299)
T PRK06300 167 MNPGGSTISLTYLASMRA------------------VPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLAS 228 (299)
T ss_pred hhcCCeEEEEeehhhcCc------------------CCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccC
Confidence 335788877432211 1122 27999999999988765432 367776665432211
Q ss_pred ch--------hhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 179 PR--------NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 179 ~~--------~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
+. .....+... . . ...+...+|++.+++.++... . +.++.+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~--~-p-~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG 284 (299)
T PRK06300 229 RAGKAIGFIERMVDYYQDW--A-P-LPEPMEAEQVGAAAAFLVSPLASAITGETLYVDHG 284 (299)
T ss_pred hhhhcccccHHHHHHHHhc--C-C-CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence 10 011111110 0 1 123456899999999887642 2 235666554
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-09 Score=90.14 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=107.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+.++|||||..||..+++.|+.+|.+|+. ..+|+++..++....+++ .
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ 114 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEGP 114 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999887 689999999988776644 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
.|+.|+.||....+. ....+-.+..+.+|..|+..|.+.+ +... .|+|++||... +.... . +..-.|..
T Consensus 115 ldvLInNAGV~~~~~-~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~--~--~~l~~~~~ 188 (314)
T KOG1208|consen 115 LDVLINNAGVMAPPF-SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKID--L--KDLSGEKA 188 (314)
T ss_pred ccEEEeCcccccCCc-ccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccc--h--hhccchhc
Confidence 899999999885322 1223356788899998887666554 4443 68999988654 21100 0 11111111
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDL 176 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~ 176 (302)
........|+.||.+......++.+. ..+.|+.+...+.
T Consensus 189 ~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l 234 (314)
T KOG1208|consen 189 KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGL 234 (314)
T ss_pred cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccce
Confidence 11112135999999988877665433 5567777666543
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-09 Score=92.03 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=106.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHH------------------------HHHhhc--CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLE------------------------ADIAAV--KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~------------------------~~~~~~--~~d~V 66 (302)
++++|||+||||.+|+.+++.|+++|+.|.+..+|......+. .....+ ...+|
T Consensus 78 ~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~v 157 (411)
T KOG1203|consen 78 KPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVIV 157 (411)
T ss_pred CCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccceeE
Confidence 3468999999999999999999999999999666543333221 222211 12244
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
+-+++-.. . . .+-..-+.+...|++|+++||+..|++ +|++||...-.... ..........
T Consensus 158 ~~~~ggrp----~-~-ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~------------~~~~~~~~~~ 219 (411)
T KOG1203|consen 158 IKGAGGRP----E-E-EDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQ------------PPNILLLNGL 219 (411)
T ss_pred EecccCCC----C-c-ccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCC------------Cchhhhhhhh
Confidence 44444221 1 1 122234457788999999999999997 88887743311110 0000000124
Q ss_pred hhhhHHHHHHHHH-hhcCceEEeeecccCCCCCCchhhHHHHhcccc-cccc--cCCcccHhhHHHHHHHHHhc
Q 022112 146 YSKTKAMVEELLK-NFENVCTLRVRMPISSDLSNPRNFITKITRYEK-VVNI--PNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 146 Y~~~K~~~E~~~~-~~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~v~D~a~~~~~~~~~ 215 (302)
+-.+|+.+|.+++ +...++|+|++...-........ .....+ .... ..-.+.-.|+|+..+.++..
T Consensus 220 ~~~~k~~~e~~~~~Sgl~ytiIR~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~r~~vael~~~all~ 289 (411)
T KOG1203|consen 220 VLKAKLKAEKFLQDSGLPYTIIRPGGLEQDTGGQREV----VVDDEKELLTVDGGAYSISRLDVAELVAKALLN 289 (411)
T ss_pred hhHHHHhHHHHHHhcCCCcEEEeccccccCCCCccee----cccCccccccccccceeeehhhHHHHHHHHHhh
Confidence 4588999999884 45778999998876532211111 111111 0001 11245678888888887765
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.4e-09 Score=89.42 Aligned_cols=186 Identities=19% Similarity=0.165 Sum_probs=122.7
Q ss_pred cCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhh------cCCCEEEEc
Q 022112 21 GRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAA------VKPTHVFNA 69 (302)
Q Consensus 21 Gat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~------~~~d~Vi~~ 69 (302)
|++ +-||..+++.|+++|++|++ +.+|+++++++..++.. -++|++||+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN 80 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence 566 89999999999999999988 67999999988776653 389999999
Q ss_pred cccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 70 a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
++.... +..+....++...+++|+.+...+++++.+. +..+|++||...... .+
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~------------------~~ 142 (241)
T PF13561_consen 81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRP------------------MP 142 (241)
T ss_dssp EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSB------------------ST
T ss_pred ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhccc------------------Cc
Confidence 987631 1111234577889999999999999888653 345888887643221 12
Q ss_pred CCCchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCCchhhHHHHh------cccccccccCCcccHhhHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSNPRNFITKIT------RYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~~~~~~~~~~------~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
....|+.+|...+.+++.++.. ..+|...|-.... ...+...+. ..........-+...+|+|.+++.
T Consensus 143 ~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i--~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~evA~~v~f 220 (241)
T PF13561_consen 143 GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPI--ETPMTERIPGNEEFLEELKKRIPLGRLGTPEEVANAVLF 220 (241)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSB--SSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccce--eccchhccccccchhhhhhhhhccCCCcCHHHHHHHHHH
Confidence 3368999999999998765322 3566655533211 111222221 110000012234589999999999
Q ss_pred HHhcC---CCC-eEEecCC
Q 022112 212 MAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 212 ~~~~~---~~~-~~~~~~~ 226 (302)
++... ..| ++.+.+|
T Consensus 221 L~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 221 LASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHSGGGTTGTSEEEEESTT
T ss_pred HhCccccCccCCeEEECCC
Confidence 88753 334 6666554
|
... |
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-09 Score=87.34 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=117.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHh----h-
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIA----A- 60 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~----~- 60 (302)
.++.+|||||+.-||++++++|.+.|..|++ +.+|+++.+++++.++ +
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999998877 6788888776554443 3
Q ss_pred -cCCCEEEEccccCCCC--CcchhhhhHHHHHHHhHHH-HHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCC
Q 022112 61 -VKPTHVFNAAGVTGRP--NVDWCESHKVETIRTNVVG-TLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 61 -~~~d~Vi~~a~~~~~~--~~~~~~~~~~~~~~~n~~~-~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
-++|++|+.||..... ..+...+.++..+++|+.| ...+..++... +-.++++||..-+...
T Consensus 87 ~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~--------- 157 (270)
T KOG0725|consen 87 FGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG--------- 157 (270)
T ss_pred CCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC---------
Confidence 2799999999977421 2334556888999999995 66666666543 2236666665433211
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCC-------chhhHHHHhcc--cccccccCCc
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSN-------PRNFITKITRY--EKVVNIPNSM 199 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~-------~~~~~~~~~~~--~~~~~~~~~~ 199 (302)
..++ ..|+.+|...+++.+..+.. ..+|+..+-.+.... ........... .........+
T Consensus 158 -------~~~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p~gr~ 229 (270)
T KOG0725|consen 158 -------PGSG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRV 229 (270)
T ss_pred -------CCCc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccccCCc
Confidence 1112 68999999999998876433 556654432210000 00111122111 0111113345
Q ss_pred ccHhhHHHHHHHHHhc
Q 022112 200 TILDELLPISIEMAKR 215 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~ 215 (302)
...+|++.++..+...
T Consensus 230 g~~~eva~~~~fla~~ 245 (270)
T KOG0725|consen 230 GTPEEVAEAAAFLASD 245 (270)
T ss_pred cCHHHHHHhHHhhcCc
Confidence 5689999988887765
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=79.41 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=92.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEEEcc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
+||||||+..||..|+++|.+.|.+|++ ..+|+.|.+++++.++.. ..+++|++|
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNA 86 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNA 86 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheeeecc
Confidence 7999999999999999999999999988 788998888766555432 679999999
Q ss_pred ccCCCC---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVTGRP---NVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|....- +.+...++..+.+.+|..++.+|....-.+ ..-+|..||+-.|-+.. .
T Consensus 87 GIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~------------------~ 148 (245)
T COG3967 87 GIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMA------------------S 148 (245)
T ss_pred cccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccc------------------c
Confidence 976300 111222345677889999998887766543 23489999986655322 2
Q ss_pred CCchhhhHHHHHHHHHh
Q 022112 143 GSFYSKTKAMVEELLKN 159 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~ 159 (302)
...|..+|+....+..+
T Consensus 149 ~PvYcaTKAaiHsyt~a 165 (245)
T COG3967 149 TPVYCATKAAIHSYTLA 165 (245)
T ss_pred cccchhhHHHHHHHHHH
Confidence 24788999888776433
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=83.64 Aligned_cols=181 Identities=20% Similarity=0.201 Sum_probs=122.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+|+|||++..+|..++..+..+|++|+. ..+|+.|.+++...+++. .+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 48999999999999999999999999888 348888888888888765 78
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CC---eEEEEcCCc-cccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GL---ILINYATGC-IFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~---~~v~~SS~~-vy~~~~~~~~~~~~~~~e 135 (302)
|.+|+|||..-.+- .+.+........++|..++.++++++... .. +++.+||.. .++-.
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~------------- 180 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIY------------- 180 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcc-------------
Confidence 99999999762110 11233456788999999999999887543 12 677777653 33321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHH-HHhcccc--cccccCCcccHhhHHHHH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFIT-KITRYEK--VVNIPNSMTILDELLPIS 209 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~v~D~a~~~ 209 (302)
..+.|+.+|....-+.....+. ..+++...|.++...+ .|-+ +..+-.. ++....+.+--+++|.++
T Consensus 181 ------GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tp-GfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~ 253 (331)
T KOG1210|consen 181 ------GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTP-GFERENKTKPEETKIIEGGSSVIKCEEMAKAI 253 (331)
T ss_pred ------cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCC-ccccccccCchheeeecCCCCCcCHHHHHHHH
Confidence 2367888887777666555443 3577777666654333 2211 1111100 122344567789999988
Q ss_pred HHHHhc
Q 022112 210 IEMAKR 215 (302)
Q Consensus 210 ~~~~~~ 215 (302)
+.=+.+
T Consensus 254 ~~~~~r 259 (331)
T KOG1210|consen 254 VKGMKR 259 (331)
T ss_pred HhHHhh
Confidence 876654
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=85.27 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=101.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCC-hhhHHHHHhhc---
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLEN-RASLEADIAAV--- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~-~~~~~~~~~~~--- 61 (302)
+++++|||||++.||..+++.|.++|+.|++ ...|+++ .+++..+++..
T Consensus 4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~~ 83 (251)
T COG1028 4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEE 83 (251)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988654 2267887 77666555432
Q ss_pred --CCCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 62 --KPTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 62 --~~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
++|++|++|+.... +-.+.........+.+|+.+...+.+.+...-. ++|++||.... ...
T Consensus 84 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~------------ 150 (251)
T COG1028 84 FGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP------------ 150 (251)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC------------
Confidence 58999999997631 122233467889999999998888875544333 78888886543 211
Q ss_pred CCCCCCC-CCchhhhHHHHHHHHHhhcCc---eEEeeecccC
Q 022112 136 EDTPNFV-GSFYSKTKAMVEELLKNFENV---CTLRVRMPIS 173 (302)
Q Consensus 136 ~~~~~~~-~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g 173 (302)
. ...|+.+|...+.+.+.+... ..+|...+..
T Consensus 151 ------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~P 186 (251)
T COG1028 151 ------PGQAAYAASKAALIGLTKALALELAPRGIRVNAVAP 186 (251)
T ss_pred ------CCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEe
Confidence 1 279999999999987765422 4456555543
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-09 Score=82.90 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=87.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-E---------------------------EEeecCCCChhhHHHHHhhc-----C
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-F---------------------------TYGSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-V---------------------------~~~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+|||||+|-||..+++.|.++|.. + ....+|++|++++.+++.+. .
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 5899999999999999999998743 2 22789999999999988754 6
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCc-cccCCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGC-IFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
++.|||+|+.... +-...........+..-+.+..+|.++......+ +|++||.. ++|..
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~----------------- 144 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP----------------- 144 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T-----------------
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc-----------------
Confidence 7889999997631 1112234456677888899999999999887777 78888875 56633
Q ss_pred CCCCCchhhhHHHHHHHHHhh
Q 022112 140 NFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
....|+..-...+.+++..
T Consensus 145 --gq~~YaaAN~~lda~a~~~ 163 (181)
T PF08659_consen 145 --GQSAYAAANAFLDALARQR 163 (181)
T ss_dssp --TBHHHHHHHHHHHHHHHHH
T ss_pred --chHhHHHHHHHHHHHHHHH
Confidence 2378999888888887543
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=75.20 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=107.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------------eecCCCChhhHHHHHhhc-------C
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------------GSGRLENRASLEADIAAV-------K 62 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-------~ 62 (302)
.|+||||+..||..|+++|++. |.++++ +..|+++.+++.++.+++ +
T Consensus 5 sv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~G 84 (249)
T KOG1611|consen 5 SVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSDG 84 (249)
T ss_pred cEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccCC
Confidence 5999999999999999999974 444433 777888887777666543 7
Q ss_pred CCEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHH-------h------C---CeEEEEcCCccccCCCC
Q 022112 63 PTHVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRD-------K------G---LILINYATGCIFEYDSG 124 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~-------~------~---~~~v~~SS~~vy~~~~~ 124 (302)
.+.+|+.||....-. .......+...+++|..++..+.+++-. . . ..+|++||.+.- ..
T Consensus 85 lnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s--~~- 161 (249)
T KOG1611|consen 85 LNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS--IG- 161 (249)
T ss_pred ceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc--cC-
Confidence 899999999762000 0112234678889999988877665421 1 1 137778875421 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc----Cc----eEEeeecccCCCCCCchhhHHHHhccccccccc
Q 022112 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE----NV----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIP 196 (302)
Q Consensus 125 ~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~----~~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 196 (302)
.....+...|..||.+.-...++.. +. +.+.|+||-=. ..+ .
T Consensus 162 ------------~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TD-Mgg-----------------~ 211 (249)
T KOG1611|consen 162 ------------GFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTD-MGG-----------------K 211 (249)
T ss_pred ------------CCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcC-CCC-----------------C
Confidence 1111234899999999998887653 22 44566665211 101 2
Q ss_pred CCcccHhhHHHHHHHHHhc
Q 022112 197 NSMTILDELLPISIEMAKR 215 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~ 215 (302)
...+.+++-+.-++..+.+
T Consensus 212 ~a~ltveeSts~l~~~i~k 230 (249)
T KOG1611|consen 212 KAALTVEESTSKLLASINK 230 (249)
T ss_pred CcccchhhhHHHHHHHHHh
Confidence 2335678888877777765
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=84.97 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=75.1
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCC--------------------CChhhHHHHHhhcCCCEEEE
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRL--------------------ENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl--------------------~~~~~~~~~~~~~~~d~Vi~ 68 (302)
..+|+||.|+|++|.||+.++..|..++ .+++.+..+. +++.++.+.+. ++|+||+
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~--gaDvVVi 82 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR--GADLVLI 82 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC--CCCEEEE
Confidence 3457799999999999999999998665 4566532221 11122245556 8999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCcc
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCI 118 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~v 118 (302)
+||... ....+....+..|+..+.++++++++++.+ +|+++|..+
T Consensus 83 taG~~~-----~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 83 CAGVPR-----KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred CCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 999762 223456788999999999999999999986 777788754
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=84.76 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=98.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeec--------CCC------------ChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSG--------RLE------------NRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~--------dl~------------~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..||.|+|++|.||+.++..|..++. +++.+.. |+. +.+++.+.+. ++|+|||+||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~--~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALK--GADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcC--CCCEEEEeCC
Confidence 45999999999999999999997664 5655322 322 2223455666 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
... ....+..+.+..|+..++++.+.+++.+.+ +|+++|.-+=+.. |+- ...+. .....|+...||.++
T Consensus 96 ~~~-----~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~---~i~-t~~~~-~~s~~p~~~viG~~~ 165 (323)
T PLN00106 96 VPR-----KPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTV---PIA-AEVLK-KAGVYDPKKLFGVTT 165 (323)
T ss_pred CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccH---HHH-HHHHH-HcCCCCcceEEEEec
Confidence 762 223467889999999999999999999876 7777775431100 000 00000 112334557899998
Q ss_pred HHHHHHHHhhcCceEEee----ecccCCC
Q 022112 151 AMVEELLKNFENVCTLRV----RMPISSD 175 (302)
Q Consensus 151 ~~~E~~~~~~~~~~~lR~----~~v~g~~ 175 (302)
...+++...+++...+.+ ++++|.+
T Consensus 166 LDs~Rl~~~lA~~lgv~~~~V~~~ViGeH 194 (323)
T PLN00106 166 LDVVRANTFVAEKKGLDPADVDVPVVGGH 194 (323)
T ss_pred chHHHHHHHHHHHhCCChhheEEEEEEeC
Confidence 878777666665544443 5667754
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=98.20 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=96.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEE------------------------------------------------
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY------------------------------------------------ 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~------------------------------------------------ 43 (302)
..+.+|||||+|.||..++++|+++ |.+|++
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 4568999999999999999999987 455432
Q ss_pred -----------------------eecCCCChhhHHHHHhhc----CCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHH
Q 022112 44 -----------------------GSGRLENRASLEADIAAV----KPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVG 95 (302)
Q Consensus 44 -----------------------~~~dl~~~~~~~~~~~~~----~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~ 95 (302)
+.+|++|.+++.+++.+. ++|.|||+||.... .-.+....+....+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 456777887777666543 68999999997531 11223456788899999999
Q ss_pred HHHHHHHHHHhCCe-EEEEcCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh
Q 022112 96 TLTLADVCRDKGLI-LINYATGCI-FEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 96 ~~~ll~~~~~~~~~-~v~~SS~~v-y~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
+.++++++.....+ +|++||... ||. +....|+.+|...+.+.+.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~-------------------~gqs~YaaAkaaL~~la~~l 2203 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGN-------------------TGQSDYAMSNDILNKAALQL 2203 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCC-------------------CCcHHHHHHHHHHHHHHHHH
Confidence 99999999876544 888888653 332 12368999999888776554
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.1e-08 Score=75.86 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=59.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
|+++|||||||+|. +++.|.++|++|++ +.+|+.|.+++..+++.. .+|.+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 68999999998876 99999999999877 234777777766655432 45666
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-----EEEEcC
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-----LINYAT 115 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-----~v~~SS 115 (302)
|+.+- +.++.++..+|++.+++ ++++=.
T Consensus 80 v~~vh---------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~g 112 (177)
T PRK08309 80 VAWIH---------------------SSAKDALSVVCRELDGSSETYRLFHVLG 112 (177)
T ss_pred EEecc---------------------ccchhhHHHHHHHHccCCCCceEEEEeC
Confidence 65533 34567899999999876 888743
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=79.30 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=66.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+|||+||||. |+.|++.|.+.|++|++ +..+..+.+++.+.+++.++|+||+++.+..
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA-- 77 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFA-- 77 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHH--
Confidence 68999999999 99999999999999888 3344567778889999889999999987541
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
...+.++.++|++.+++++-+
T Consensus 78 ----------------~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 78 ----------------AQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----------------HHHHHHHHHHHHHhCCcEEEE
Confidence 234567899999999986665
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=71.80 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=50.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh-----cCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA-----VKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~-----~~~d 64 (302)
++.++||||+|.||..+++.|.++|++|++ +.+|+++.+++.+.+++ .++|
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iD 95 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRID 95 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999988765 56788888877665532 2799
Q ss_pred EEEEccccCC
Q 022112 65 HVFNAAGVTG 74 (302)
Q Consensus 65 ~Vi~~a~~~~ 74 (302)
++||+||...
T Consensus 96 ilVnnAG~~~ 105 (169)
T PRK06720 96 MLFQNAGLYK 105 (169)
T ss_pred EEEECCCcCC
Confidence 9999999763
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.6e-07 Score=80.14 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=65.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-------CcEEEeec------------CCCC-----------hhhHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-------IDFTYGSG------------RLEN-----------RASLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-------~~V~~~~~------------dl~~-----------~~~~~~~~~~~~~ 63 (302)
..||+||||+|+||++++..|+..+ .+++++.. |+.| ..++.+.+. ++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~--~a 79 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK--DV 79 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC--CC
Confidence 3589999999999999999999854 46766322 2222 233445566 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
|+|||+||... ....+..+.++.|+...+.+.+..+++.
T Consensus 80 DiVI~tAG~~~-----~~~~~R~~l~~~N~~i~~~i~~~i~~~~ 118 (325)
T cd01336 80 DVAILVGAMPR-----KEGMERKDLLKANVKIFKEQGEALDKYA 118 (325)
T ss_pred CEEEEeCCcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999762 2234568899999999999998888873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-07 Score=78.37 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=45.5
Q ss_pred ccEEEEEcCC----------------cchHHHHHHHHHhCCCcEEEeecCCC---C-----------------hhhHHHH
Q 022112 14 PLKFLIYGRT----------------GWIGGLLGKLCQAQSIDFTYGSGRLE---N-----------------RASLEAD 57 (302)
Q Consensus 14 ~~~ilItGat----------------G~iG~~l~~~L~~~g~~V~~~~~dl~---~-----------------~~~~~~~ 57 (302)
+++||||+|. ||+|++|+++|+++|++|+++.+..+ . .+.+.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~~ 82 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKSI 82 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHHH
Confidence 5799999885 99999999999999999997554211 0 1233444
Q ss_pred HhhcCCCEEEEccccC
Q 022112 58 IAAVKPTHVFNAAGVT 73 (302)
Q Consensus 58 ~~~~~~d~Vi~~a~~~ 73 (302)
+.+.++|+|||+||..
T Consensus 83 ~~~~~~D~VIH~AAvs 98 (229)
T PRK09620 83 ITHEKVDAVIMAAAGS 98 (229)
T ss_pred hcccCCCEEEECcccc
Confidence 5445799999999986
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-07 Score=71.14 Aligned_cols=184 Identities=16% Similarity=0.118 Sum_probs=118.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-CCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-KPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~ 71 (302)
+..|++||+.-.||+.+++.|.+.|..|++ +.+|+++.+.+.+.+..+ .+|..++.||
T Consensus 7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVNNAg 86 (245)
T KOG1207|consen 7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVNNAG 86 (245)
T ss_pred ceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhccch
Confidence 458999999999999999999999999988 678888888887777654 5689999998
Q ss_pred cCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCe--EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLI--LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 72 ~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~--~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
..- -|.-+-...+.+..+++|+.+..++.+...+ .+++ +|.+||.+.-.. ...++
T Consensus 87 vA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~------------------~~nHt 148 (245)
T KOG1207|consen 87 VATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRP------------------LDNHT 148 (245)
T ss_pred hhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccc------------------cCCce
Confidence 652 0001112335567788999998888887443 2333 999998653221 11347
Q ss_pred chhhhHHHHHHHHHhhcCc---eEEeeecccCCC---CCCchhhHHHHhcccccccc-cCCcccHhhHHHHHHHHHhc
Q 022112 145 FYSKTKAMVEELLKNFENV---CTLRVRMPISSD---LSNPRNFITKITRYEKVVNI-PNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~---~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~~~~ 215 (302)
.|..+|.+.+.+.+..+.. .-+|...+-..- ..+..+|...-..+...-.. ..-|.-++.+..+++.++..
T Consensus 149 vYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rFaEV~eVVnA~lfLLSd 226 (245)
T KOG1207|consen 149 VYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSD 226 (245)
T ss_pred EEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCchhhhhHHHHHHhhheeeeec
Confidence 8999999999887776543 445554432110 00111221111111110011 12356789999999888865
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-07 Score=78.32 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=65.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEE---------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY---------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~---------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
||+|||+|+ |+||+.++..|+++| .+|++ ...|..|.+++.++++ +.|+||+++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~--~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK--DFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh--cCCEEEEeCC
Confidence 679999997 999999999999999 88887 6778889999999999 6699999988
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
..- ..+++++|.+.++.+|=+|
T Consensus 78 ~~~---------------------~~~i~ka~i~~gv~yvDts 99 (389)
T COG1748 78 PFV---------------------DLTILKACIKTGVDYVDTS 99 (389)
T ss_pred chh---------------------hHHHHHHHHHhCCCEEEcc
Confidence 651 1258899999988766654
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=68.64 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=108.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------e--------ecCCCChhhHHHHHh-----hcCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------G--------SGRLENRASLEADIA-----AVKPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~--------~~dl~~~~~~~~~~~-----~~~~d 64 (302)
+.+-+||||++..||..++..+.+.+.+... . .+|++....+.+.++ .-+-|
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr~ 84 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGKRD 84 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCcee
Confidence 3446999999999999999988887655322 2 233333332333222 12679
Q ss_pred EEEEccccCCCCCcc------hhhhhHHHHHHHhHHHHHHHHHHHHHh----CC-e-EEEEcCCccccCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVD------WCESHKVETIRTNVVGTLTLADVCRDK----GL-I-LINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~-~-~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
.|||.||..+ .+. .....+..+|+.|+..+..+...+-+. .+ + .|++||.+..-
T Consensus 85 iiI~NAG~lg--dvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------------ 150 (253)
T KOG1204|consen 85 IIIHNAGSLG--DVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------------ 150 (253)
T ss_pred EEEecCCCcc--chhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc------------
Confidence 9999999774 222 234577889999999888887766432 22 3 78888876432
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc-e-EEeeecccCCCCCCchhhHHHHhccccc----------ccccCCcc
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV-C-TLRVRMPISSDLSNPRNFITKITRYEKV----------VNIPNSMT 200 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-~-~lR~~~v~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~i 200 (302)
|.+.+..|+.+|++.+.+.+..+.. . -+|.-. |-|+. -...+-..+.++... .......+
T Consensus 151 ------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~-~aPGv-vDT~mq~~ir~~~~~~p~~l~~f~el~~~~~ll 222 (253)
T KOG1204|consen 151 ------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLN-YAPGV-VDTQMQVCIRETSRMTPADLKMFKELKESGQLL 222 (253)
T ss_pred ------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEE-ccCCc-ccchhHHHHhhccCCCHHHHHHHHHHHhcCCcC
Confidence 2224578999999999998776432 2 333222 22211 112222222222210 01233455
Q ss_pred cHhhHHHHHHHHHhcC
Q 022112 201 ILDELLPISIEMAKRN 216 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~ 216 (302)
...+.|+.+..++++.
T Consensus 223 ~~~~~a~~l~~L~e~~ 238 (253)
T KOG1204|consen 223 DPQVTAKVLAKLLEKG 238 (253)
T ss_pred ChhhHHHHHHHHHHhc
Confidence 6677888888877764
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00013 Score=58.56 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=119.9
Q ss_pred cccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.++|+||+|-. .-|+..|++.|.++|-++.. +.||.++.+++...++.. +
T Consensus 5 ~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g~ 84 (259)
T COG0623 5 EGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWGK 84 (259)
T ss_pred CCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhCc
Confidence 35699999854 45899999999999988766 789999999988887654 7
Q ss_pred CCEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
.|.++|+.+... ....+.+.+......++.......++++++.. +..+|-+| |-+..
T Consensus 85 lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs~----------- 149 (259)
T COG0623 85 LDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGSE----------- 149 (259)
T ss_pred ccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----eccce-----------
Confidence 899999999762 00111122334455555555666677777654 32344333 22111
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCC-----CCchhhHHHHhccc-ccccccCCcccHhhH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDL-----SNPRNFITKITRYE-KVVNIPNSMTILDEL 205 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~-----~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~ 205 (302)
..-|..+.-|..|...|..++..+.. ..+|+..+=-+.. .+... +..++... ..-+..++ +.++|+
T Consensus 150 ---r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~-f~~~l~~~e~~aPl~r~-vt~eeV 224 (259)
T COG0623 150 ---RVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGD-FRKMLKENEANAPLRRN-VTIEEV 224 (259)
T ss_pred ---eecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhcccc-HHHHHHHHHhhCCccCC-CCHHHh
Confidence 11223468899999999988776433 5788765432110 01122 33333322 22223333 458888
Q ss_pred HHHHHHHHhc---CC-CCeEEecCCCc
Q 022112 206 LPISIEMAKR---NL-TGIWNFTNPGV 228 (302)
Q Consensus 206 a~~~~~~~~~---~~-~~~~~~~~~~~ 228 (302)
......++.. .. +++.++.+|..
T Consensus 225 G~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 225 GNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred hhhHHHHhcchhcccccceEEEcCCce
Confidence 8887777754 33 34777766643
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6e-06 Score=69.21 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=82.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChh----hHHHHHhhcCCCEE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRA----SLEADIAAVKPTHV 66 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~----~~~~~~~~~~~d~V 66 (302)
=..|||||..||+..+++|+++|.+|+. +..|.++.+ .+.+.+...++.++
T Consensus 51 WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgIL 130 (312)
T KOG1014|consen 51 WAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGIL 130 (312)
T ss_pred EEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEE
Confidence 4899999999999999999999999877 455665544 46667776788899
Q ss_pred EEccccCCCCCcchhh-h----hHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNVDWCE-S----HKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~-~----~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+++|... +..... + .....+.+|+.++..+.+..... + .-+|++||+.-.
T Consensus 131 VNNvG~~~--~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~----------------- 191 (312)
T KOG1014|consen 131 VNNVGMSY--DYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGL----------------- 191 (312)
T ss_pred EecccccC--CCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccccc-----------------
Confidence 99999772 111111 1 22345566777655555444321 2 238888885421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
.+.|..+.|+.+|...+.....
T Consensus 192 -~p~p~~s~ysasK~~v~~~S~~ 213 (312)
T KOG1014|consen 192 -IPTPLLSVYSASKAFVDFFSRC 213 (312)
T ss_pred -ccChhHHHHHHHHHHHHHHHHH
Confidence 2334558899999976665433
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.6e-06 Score=70.38 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=70.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHh---CCCcEEEee---------cCCCCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQA---QSIDFTYGS---------GRLENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~---------~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||+|+||+|.+|++++..|.. .+++++++. .|+.+. +++.+.+. ++|+||.++|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcCC
Confidence 7999999999999999988854 345666643 344431 12334555 7999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
... ....+....+..|.....++++++++.+.+ +|.+.|.
T Consensus 79 ~~~-----~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN 119 (312)
T PRK05086 79 VAR-----KPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN 119 (312)
T ss_pred CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 752 223467788999999999999999999876 6666665
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.7e-06 Score=68.73 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=37.5
Q ss_pred cCCcchHHHHHHHHHhCCCcEEEeecCCC---------------Chh----hHHHHHhhcCCCEEEEccccC
Q 022112 21 GRTGWIGGLLGKLCQAQSIDFTYGSGRLE---------------NRA----SLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 21 GatG~iG~~l~~~L~~~g~~V~~~~~dl~---------------~~~----~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+|||+|++|+++|+++|++|+++.++.. ..+ .+.+.+. ++|+|||+||..
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~~~~~v~~i~v~s~~~m~~~l~~~~~--~~DivIh~AAvs 92 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPEPHPNLSIIEIENVDDLLETLEPLVK--DHDVLIHSMAVS 92 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEECcccccCCCCCCeEEEEEecHHHHHHHHHHHhc--CCCEEEeCCccC
Confidence 56899999999999999999999654311 111 1223333 789999999976
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.3e-05 Score=62.12 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=88.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EE--E------------------------------eecCCCChhhHHHHHh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FT--Y------------------------------GSGRLENRASLEADIA 59 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~--~------------------------------~~~dl~~~~~~~~~~~ 59 (302)
|.+-+||||++..+|.+|+..|++...+ |+ + +..|++|..++..+.+
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 3446999999999999999999987655 21 1 6778888777655544
Q ss_pred hc-----CCCEEEEccccCCCCCcch----------------------------hhhhHHHHHHHhHHHHHHHHHHHHHh
Q 022112 60 AV-----KPTHVFNAAGVTGRPNVDW----------------------------CESHKVETIRTNVVGTLTLADVCRDK 106 (302)
Q Consensus 60 ~~-----~~d~Vi~~a~~~~~~~~~~----------------------------~~~~~~~~~~~n~~~~~~ll~~~~~~ 106 (302)
+. +.|.|+-.||...-++.+| +.+...+.++.|+.|.-.+.+.....
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 32 7899998888764333333 11233578899999998888776553
Q ss_pred -----CCeEEEEcCCccccCCCCCCCCCCCCCCCCC-CCCCCCCchhhhHHHHHHHH
Q 022112 107 -----GLILINYATGCIFEYDSGHPLGSGIGFKEED-TPNFVGSFYSKTKAMVEELL 157 (302)
Q Consensus 107 -----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~-~~~~~~~~Y~~~K~~~E~~~ 157 (302)
..++|.+||-..-.. .++=++ .......+|..||++.+.+-
T Consensus 162 l~~~~~~~lvwtSS~~a~kk----------~lsleD~q~~kg~~pY~sSKrl~DlLh 208 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARKK----------NLSLEDFQHSKGKEPYSSSKRLTDLLH 208 (341)
T ss_pred hhcCCCCeEEEEeecccccc----------cCCHHHHhhhcCCCCcchhHHHHHHHH
Confidence 225777777532111 111122 22223468999999998763
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.6e-06 Score=63.12 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=113.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
....|||||...+|...++.|.++|..|.. ...|.+.++++..++... +.|..+
T Consensus 9 glvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~~v 88 (260)
T KOG1199|consen 9 GLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDALV 88 (260)
T ss_pred CeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceeeee
Confidence 446899999999999999999999877665 678899888888777643 679999
Q ss_pred EccccCC---CC----CcchhhhhHHHHHHHhHHHHHHHHHHHHHh---------CCe--EEEEcCCccccCCCCCCCCC
Q 022112 68 NAAGVTG---RP----NVDWCESHKVETIRTNVVGTLTLADVCRDK---------GLI--LINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 68 ~~a~~~~---~~----~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~--~v~~SS~~vy~~~~~~~~~~ 129 (302)
+||+... +- ......++....+++|+.|+.|+++..... +.| +|...|...|.+.-
T Consensus 89 ncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~------ 162 (260)
T KOG1199|consen 89 NCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQT------ 162 (260)
T ss_pred eccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCcc------
Confidence 9999651 00 011133466778899999999998765432 335 44444444454321
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHH----HHhhcCceEEeeecccCCCCCCc-----hhhHHHHhcccccccccCCcc
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEEL----LKNFENVCTLRVRMPISSDLSNP-----RNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~----~~~~~~~~~lR~~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~i 200 (302)
....|+.||...--+ .+.++. ..+|+..+-..-...| +.-+..++... +..+--.-
T Consensus 163 ------------gqaaysaskgaivgmtlpiardla~-~gir~~tiapglf~tpllsslpekv~~fla~~--ipfpsrlg 227 (260)
T KOG1199|consen 163 ------------GQAAYSASKGAIVGMTLPIARDLAG-DGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQL--IPFPSRLG 227 (260)
T ss_pred ------------chhhhhcccCceEeeechhhhhccc-CceEEEeecccccCChhhhhhhHHHHHHHHHh--CCCchhcC
Confidence 236788888764433 233322 4677655422111011 11111111111 11122233
Q ss_pred cHhhHHHHHHHHHhcC--CCCeEEecC
Q 022112 201 ILDELLPISIEMAKRN--LTGIWNFTN 225 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~--~~~~~~~~~ 225 (302)
|..+.+..+..+++++ .++++.+.+
T Consensus 228 ~p~eyahlvqaiienp~lngevir~dg 254 (260)
T KOG1199|consen 228 HPHEYAHLVQAIIENPYLNGEVIRFDG 254 (260)
T ss_pred ChHHHHHHHHHHHhCcccCCeEEEecc
Confidence 5667777777778875 334555544
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.5e-05 Score=65.16 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=63.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-------cEEEee------------cCCCCh-----------hhHHHHHhhcCCCE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGS------------GRLENR-----------ASLEADIAAVKPTH 65 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~------------~dl~~~-----------~~~~~~~~~~~~d~ 65 (302)
||.|+||+|.+|+.++..|...|. +++.+. .|+.+. ....+.+. ++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~--~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK--DVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC--CCCE
Confidence 799999999999999999987652 344432 233332 22334555 8999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
|||+||... ....+..+.+..|+...+.+....++..
T Consensus 80 VVitAG~~~-----~~g~tR~dll~~N~~i~~~i~~~i~~~~ 116 (323)
T cd00704 80 AILVGAFPR-----KPGMERADLLRKNAKIFKEQGEALNKVA 116 (323)
T ss_pred EEEeCCCCC-----CcCCcHHHHHHHhHHHHHHHHHHHHHhC
Confidence 999999762 3345678899999999999999998883
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0002 Score=62.83 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=46.5
Q ss_pred ccEEEEEcCCcchHHH--HHHHHHhCCCcEEE------------------------------------eecCCCChhhHH
Q 022112 14 PLKFLIYGRTGWIGGL--LGKLCQAQSIDFTY------------------------------------GSGRLENRASLE 55 (302)
Q Consensus 14 ~~~ilItGatG~iG~~--l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~ 55 (302)
.+++||||+++-+|.+ +++.| +.|.+|++ +.+|+++.+++.
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v~ 119 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIKQ 119 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 4699999999999999 89999 88876544 456777777666
Q ss_pred HHHhhc-----CCCEEEEccccC
Q 022112 56 ADIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 56 ~~~~~~-----~~d~Vi~~a~~~ 73 (302)
++++.. ++|++||.+|..
T Consensus 120 ~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 120 KVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHhcCCCCEEEECCccC
Confidence 555432 689999999976
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.6e-05 Score=61.45 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=67.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|||+|||.|||+ =|+.|++.|.+.|+.|++ ..+-+.+.+.+.+.+++.+++.||+..-+..
T Consensus 1 ~~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA-- 77 (248)
T PRK08057 1 MMPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYA-- 77 (248)
T ss_pred CCceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccH--
Confidence 577999999998 799999999999998877 4455668899999999999999999877551
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
...+.++.++|++.+++++-+
T Consensus 78 ----------------~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 78 ----------------AQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ----------------HHHHHHHHHHHHHhCCcEEEE
Confidence 234567899999999986665
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=55.77 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=63.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChh----hHH-----------------HHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRA----SLE-----------------ADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~----~~~-----------------~~~~~~~~d~Vi~~a~ 71 (302)
|||.|+||+|.+|++++..|...+ .|++.+..+-...+ ++. +.++ ++|+||-+|+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK--DADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT--TESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc--cccEEEEecc
Confidence 799999999999999999999987 45555333311111 111 1222 7899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 109 (302)
... ....+..+.+..|....+.+.+..++.+-.
T Consensus 79 ~~~-----~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~ 111 (141)
T PF00056_consen 79 VPR-----KPGMSRLDLLEANAKIVKEIAKKIAKYAPD 111 (141)
T ss_dssp TSS-----STTSSHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccc-----cccccHHHHHHHhHhHHHHHHHHHHHhCCc
Confidence 652 333467788899999999999999998643
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=69.05 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=49.7
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEee-------------cCCCChhhHHHHHhhc--
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGS-------------GRLENRASLEADIAAV-- 61 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~-------------~dl~~~~~~~~~~~~~-- 61 (302)
.++++||||| +|.+|.++++.|.++|.+|+++. .|+++.+++.+.+.+.
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~ 266 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGVKRIDVESAQEMLDAVLAALP 266 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCcEEEccCCHHHHHHHHHHhcC
Confidence 4579999999 99999999999999999998743 4566666666666432
Q ss_pred CCCEEEEccccC
Q 022112 62 KPTHVFNAAGVT 73 (302)
Q Consensus 62 ~~d~Vi~~a~~~ 73 (302)
++|++||+||..
T Consensus 267 ~~DilI~~Aav~ 278 (399)
T PRK05579 267 QADIFIMAAAVA 278 (399)
T ss_pred CCCEEEEccccc
Confidence 689999999976
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-05 Score=68.16 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=53.7
Q ss_pred EEEEcCCcchHHHHHHHHHhCCC--cEEE----------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSI--DFTY----------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~--~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
|+|+|| |++|+.+++.|++++. +|++ ...|..|.+++.+.++ ++|+||+|+++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~--~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR--GCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT--TSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHh--cCCEEEECCcc
Confidence 799999 9999999999999874 5555 6778889999999999 88999999985
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
. ....++++|.+.++++|=.
T Consensus 78 ~---------------------~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 78 F---------------------FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp G---------------------GHHHHHHHHHHHT-EEEES
T ss_pred c---------------------hhHHHHHHHHHhCCCeecc
Confidence 3 0124778888888776663
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.6e-05 Score=64.46 Aligned_cols=85 Identities=11% Similarity=0.004 Sum_probs=62.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-------cEEEe------------ecCCCChh-----------hHHHHHhhcCCCE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-------DFTYG------------SGRLENRA-----------SLEADIAAVKPTH 65 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-------~V~~~------------~~dl~~~~-----------~~~~~~~~~~~d~ 65 (302)
||.|+||+|.||+.++..|...+. +++.+ ..|+.|.. ...+.+. ++|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~--~aDi 78 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT--DVDV 78 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC--CCCE
Confidence 589999999999999999987543 35553 22344433 2234455 8999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
|||+||... ....+..+.+..|+...+.+.+..+++.
T Consensus 79 VVitAG~~~-----~~~~tr~~ll~~N~~i~k~i~~~i~~~~ 115 (324)
T TIGR01758 79 AILVGAFPR-----KEGMERRDLLSKNVKIFKEQGRALDKLA 115 (324)
T ss_pred EEEcCCCCC-----CCCCcHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999762 2234568889999999999999999874
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=60.11 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=118.4
Q ss_pred cEEEEEcCC-cchHHHHHHHHHhCCCcEEE-----------------------------eecCCCCh---hhHHHHHhhc
Q 022112 15 LKFLIYGRT-GWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENR---ASLEADIAAV 61 (302)
Q Consensus 15 ~~ilItGat-G~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~---~~~~~~~~~~ 61 (302)
.-.|||||+ |-||..++..|++-|-.|++ +..+.... +.+.+.+...
T Consensus 397 ~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg~e 476 (866)
T COG4982 397 KVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIGDE 476 (866)
T ss_pred ceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhccc
Confidence 468999976 78999999999999999888 34444433 4444443211
Q ss_pred ----------------CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC------e--EEEEcCC-
Q 022112 62 ----------------KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL------I--LINYATG- 116 (302)
Q Consensus 62 ----------------~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~--~v~~SS~- 116 (302)
.+|.+|-+|++...+.........+...++-+...++++-..++.+. | +|+-.|-
T Consensus 477 q~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgSPN 556 (866)
T COG4982 477 QTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGSPN 556 (866)
T ss_pred cccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCCCC
Confidence 47889999997743333333334445555666666777777766532 2 3333332
Q ss_pred -ccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---------eEEeeecccCCCCCCchhhHHHH
Q 022112 117 -CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---------CTLRVRMPISSDLSNPRNFITKI 186 (302)
Q Consensus 117 -~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---------~~lR~~~v~g~~~~~~~~~~~~~ 186 (302)
..||+ ...|+.+|...|.++..|... +.-+.+|+.|.+..+.++.+...
T Consensus 557 rG~FGg---------------------DGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg~Ndiiv~a 615 (866)
T COG4982 557 RGMFGG---------------------DGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMGHNDIIVAA 615 (866)
T ss_pred CCccCC---------------------CcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccCCcchhHHH
Confidence 12331 268999999999998665332 55678999998877777766555
Q ss_pred hcccccccccCCcccHhhHHHHHHHHHhc-------CCCCeEEecCCC---ccCHHHHHHH
Q 022112 187 TRYEKVVNIPNSMTILDELLPISIEMAKR-------NLTGIWNFTNPG---VVSHNEILEM 237 (302)
Q Consensus 187 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~-------~~~~~~~~~~~~---~~s~~e~~~~ 237 (302)
....-+ +.| ..+.+|..++-++.. ..+-.+++.+|= +....+++..
T Consensus 616 iEk~GV----~ty-S~~EmA~~LLgL~saev~e~a~~~PI~aDLtGGL~~~~~~~a~~A~~ 671 (866)
T COG4982 616 IEKAGV----RTY-STDEMAFNLLGLASAEVVELAASSPITADLTGGLGEVPLLKAELAAL 671 (866)
T ss_pred HHHhCc----eec-CHHHHHHHHHhhccHHHHHHHhcCCeEeeccCccccchhhHHHHHHH
Confidence 432221 111 234444444443322 233467777762 2445555544
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=63.81 Aligned_cols=143 Identities=9% Similarity=-0.012 Sum_probs=93.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-------cEEEeec------------CCCChh-----------hHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGSG------------RLENRA-----------SLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~~------------dl~~~~-----------~~~~~~~~~~~ 63 (302)
.+||.|+|++|.||..++..|+..|. +++.+.. |+.+.. ...+.+. ++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK--DA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC--CC
Confidence 35999999999999999999998775 4555322 121111 1113334 88
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-e-EEEEcCCcc----ccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-I-LINYATGCI----FEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~-~v~~SS~~v----y~~~~~~~~~~~~~~~e~~ 137 (302)
|+||.+||.. .....+..+.+..|+...+.+.+..++.+- . ++++-|.-+ |-- ....
T Consensus 80 DivvitaG~~-----~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~------------~k~s 142 (322)
T cd01338 80 DWALLVGAKP-----RGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA------------MKNA 142 (322)
T ss_pred CEEEEeCCCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH------------HHHc
Confidence 9999999975 223456778899999999999999988763 3 333333311 100 0011
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSD 175 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~ 175 (302)
...|+...||.+++..+++...+++. ..+|..+++|++
T Consensus 143 g~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 143 PDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred CCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 11344578999999999887666544 446666778875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=54.28 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=54.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHh-CCCcEEEe-ecCC-------------------CChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQA-QSIDFTYG-SGRL-------------------ENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~-~g~~V~~~-~~dl-------------------~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|||.|+|++|.+|+.+++.+.+ .++++.+. ...- .-.+++++.+. .+|+||++..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~--~~DVvIDfT~p- 77 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE--EADVVIDFTNP- 77 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT--H-SEEEEES-H-
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc--cCCEEEEcCCh-
Confidence 6999999999999999999999 67777662 2221 00245777887 49999988532
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
..+...++.|.+.++++|.-+|.
T Consensus 78 --------------------~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 78 --------------------DAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp --------------------HHHHHHHHHHHHHT-EEEEE-SS
T ss_pred --------------------HHhHHHHHHHHhCCCCEEEECCC
Confidence 22345778888888887776663
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.9e-05 Score=64.57 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=53.3
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE---e---------------ecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---G---------------SGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---~---------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
++|+||.|+||||++|..|++.|.+++|.+.- + ..++.+.+. . .+. ++|+||-+....
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~-~-~~~--~vD~vFla~p~~ 77 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDS-F-DFS--QVQLAFFAAGAA 77 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCCh-H-Hhc--CCCEEEEcCCHH
Confidence 34579999999999999999999987765432 1 111111221 1 234 789999876522
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCcc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCI 118 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~v 118 (302)
....++..+.+.|+++|=.|+..=
T Consensus 78 ---------------------~s~~~v~~~~~~G~~VIDlS~~fR 101 (336)
T PRK05671 78 ---------------------VSRSFAEKARAAGCSVIDLSGALP 101 (336)
T ss_pred ---------------------HHHHHHHHHHHCCCeEEECchhhc
Confidence 012366777777888777777653
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.7e-05 Score=61.47 Aligned_cols=58 Identities=9% Similarity=0.136 Sum_probs=42.4
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEee------------cCCCChhhHHHHHhh-----cCCCEEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGS------------GRLENRASLEADIAA-----VKPTHVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~------------~dl~~~~~~~~~~~~-----~~~d~Vi~~a~~~ 73 (302)
|++=-.++|.+|.++++.|+++|++|+++. +|+.+.+++.+.++. .++|++||+||..
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~~~~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~ 91 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALKPEPHPNLSIREIETTKDLLITLKELVQEHDILIHSMAVS 91 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcccccCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEec
Confidence 333335699999999999999999998743 455666655544332 1689999999965
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=64.15 Aligned_cols=87 Identities=14% Similarity=0.234 Sum_probs=57.6
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeec------------------CCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSG------------------RLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~------------------dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
.++|||.|.||||++|..|++.|.++ .++++.+.. |..+.++++.. ++ ++|+||-+.+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf~Alp 113 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS--DVDAVFCCLP 113 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc--CCCEEEEcCC
Confidence 46679999999999999999999998 567766322 22222222222 34 7899998655
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYD 122 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~ 122 (302)
.. ....++..+ +.++++|-+|+..-+.+.
T Consensus 114 ~~---------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~~ 142 (381)
T PLN02968 114 HG---------------------TTQEIIKAL-PKDLKIVDLSADFRLRDI 142 (381)
T ss_pred HH---------------------HHHHHHHHH-hCCCEEEEcCchhccCCc
Confidence 21 233455555 357788888988766543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=8.2e-05 Score=64.54 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=42.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-C-CcEEEeecCCCCh------------hhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-S-IDFTYGSGRLENR------------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g-~~V~~~~~dl~~~------------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++|+||||+|+||+.++++|.++ | .+++.+..+.... ..+.+.+. ++|+|||+++..
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~--~aDiVv~~ts~~ 226 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALP--EADIVVWVASMP 226 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHc--cCCEEEECCcCC
Confidence 468999999999999999999864 4 5676654432211 12334555 799999999965
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=58.17 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=64.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|+|||.|||+ =|+.|++.|.++|+ |++ ..+-+.+.+.+.+.+++.+++.||+..-+..
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA 78 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAVIDATHPFA 78 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcEEEECCCchH
Confidence 7999999988 79999999999998 554 4444668899999999999999999876551
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
...+.++.++|++.+++++-+
T Consensus 79 ------------------~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 79 ------------------AEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ------------------HHHHHHHHHHHhhcCcceEEE
Confidence 234567999999999986655
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=57.76 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=45.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC-----------------------CCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR-----------------------LENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d-----------------------l~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
..++++|+||+|.+|+.+++.|.+.|++|+++..+ ..+.+++.+.+. ++|+||++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~diVi~a 104 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK--GADVVFAA 104 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh--cCCEEEEC
Confidence 34689999999999999999999999998884433 334455556666 78999987
Q ss_pred cccC
Q 022112 70 AGVT 73 (302)
Q Consensus 70 a~~~ 73 (302)
....
T Consensus 105 t~~g 108 (194)
T cd01078 105 GAAG 108 (194)
T ss_pred CCCC
Confidence 6644
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=9e-05 Score=63.17 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=47.8
Q ss_pred EEEEEcCCcchHHHHHHHHHh----CCCcEE----------------------------EeecCCCChhhHHHHHhhcCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQA----QSIDFT----------------------------YGSGRLENRASLEADIAAVKP 63 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~----~g~~V~----------------------------~~~~dl~~~~~~~~~~~~~~~ 63 (302)
-++|.|||||.|..+++.+++ .|...- ++.+|.+|++++.+... ++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak--~~ 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK--QA 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh--hh
Confidence 589999999999999999998 333322 37799999999999999 89
Q ss_pred CEEEEccccC
Q 022112 64 THVFNAAGVT 73 (302)
Q Consensus 64 d~Vi~~a~~~ 73 (302)
.+|++|+|+.
T Consensus 85 ~vivN~vGPy 94 (423)
T KOG2733|consen 85 RVIVNCVGPY 94 (423)
T ss_pred EEEEeccccc
Confidence 9999999976
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00058 Score=59.07 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc--EEEeecC----CC--------C-------------hhhHHHHHhhcCCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID--FTYGSGR----LE--------N-------------RASLEADIAAVKPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~--V~~~~~d----l~--------~-------------~~~~~~~~~~~~~d~Vi 67 (302)
|||.|+|++|++|..++..|+..|+. |+++..+ .. + ..+. +.+. ++|+||
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~--~aDiVi 77 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVA--GSDIVI 77 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhC--CCCEEE
Confidence 69999999999999999999999864 6664331 11 0 0011 2233 889999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEcC
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG--LILINYAT 115 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~v~~SS 115 (302)
-+++... ....+..+.+..|....+.+++...+.. ..+|..++
T Consensus 78 itag~p~-----~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 78 ITAGVPR-----KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred EecCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9998652 2223456778889999999999888764 34666665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00076 Score=49.78 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=48.4
Q ss_pred EEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCC-ChhhH-------------------HHHHhhcCCCEEEEccccCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLE-NRASL-------------------EADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~-~~~~~-------------------~~~~~~~~~d~Vi~~a~~~~ 74 (302)
||.|+||||++|+.|++.|.++. .++..+...-. .-..+ .+.+. ++|+||.|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~- 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELS--DVDVVFLALPHG- 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHT--TESEEEE-SCHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhh--cCCEEEecCchh-
Confidence 69999999999999999999964 34444222211 11111 12233 889999886632
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
....+...+.+.++++|=+|+.
T Consensus 78 --------------------~~~~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 78 --------------------ASKELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp --------------------HHHHHHHHHHHTTSEEEESSST
T ss_pred --------------------HHHHHHHHHhhCCcEEEeCCHH
Confidence 1234666667778766666664
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00058 Score=59.78 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=25.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDF 41 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V 41 (302)
||||+|.||||++|..|++.|.+++|.+
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~ 28 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV 28 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc
Confidence 5799999999999999999999988764
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00048 Score=58.38 Aligned_cols=56 Identities=29% Similarity=0.441 Sum_probs=45.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++|.|||||.|.-++++|..+|..-.. -..++-++..+++.+. ..++|+||+|+.
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~--~~~VVlncvGPy 82 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS--RTQVVLNCVGPY 82 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh--cceEEEeccccc
Confidence 6999999999999999999999987543 1222444677777777 889999999977
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00095 Score=57.51 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=66.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEee--------cCCCCh------------hhHHHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGS--------GRLENR------------ASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~--------~dl~~~------------~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+|++|.+|+.++-.|..++. +++.+. .|+.+. +++-+.+. ++|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~--daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALK--GADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcC--CCCEEEEeCCC
Confidence 6999999999999999999998874 555422 222211 11223444 88999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
. .....+..+.+..|....+.+.+..++++-. ++.+|
T Consensus 79 ~-----~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt 117 (310)
T cd01337 79 P-----RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS 117 (310)
T ss_pred C-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 5 2334567889999999999999999887644 44444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=55.92 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=53.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-ecC-----------CCChhhHHHHHhhcCCCEEEEccccCCCCCcch
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-SGR-----------LENRASLEADIAAVKPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~~d-----------l~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~ 80 (302)
+|||.|+|++|.+|+.+++.+.+. +.+++++ ..+ +...+++.+.+. ++|+||+++.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~--~~DvVid~t~p~------- 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLA--DADVLIDFTTPE------- 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhcc--CCCEEEECCCHH-------
Confidence 479999999999999999998864 6777762 222 112345666666 799999987532
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
....++..|.+.++++|.-
T Consensus 72 --------------~~~~~~~~al~~G~~vvig 90 (257)
T PRK00048 72 --------------ATLENLEFALEHGKPLVIG 90 (257)
T ss_pred --------------HHHHHHHHHHHcCCCEEEE
Confidence 1134667777778776643
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=57.97 Aligned_cols=85 Identities=20% Similarity=0.260 Sum_probs=53.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCCCh------------------hhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLENR------------------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~~~------------------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|||||+|+||||++|+.+++.|.++ +++++.+..+-... +++... ...++|+||-|....
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcH
Confidence 4689999999999999999999987 56666643321100 001111 112689988765422
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy 119 (302)
....++..+.+.|+++|=.|+..-+
T Consensus 80 ---------------------~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 80 ---------------------VSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred ---------------------HHHHHHHHHHhCCCEEEECCcccCC
Confidence 1234556666677777877776544
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00065 Score=53.92 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCcchHHHHHHHHHhCCCcEEEeecCCC-------------ChhhHHHHHhhc--CCCEEEEccccC
Q 022112 22 RTGWIGGLLGKLCQAQSIDFTYGSGRLE-------------NRASLEADIAAV--KPTHVFNAAGVT 73 (302)
Q Consensus 22 atG~iG~~l~~~L~~~g~~V~~~~~dl~-------------~~~~~~~~~~~~--~~d~Vi~~a~~~ 73 (302)
+||..|..|++.+..+|++|+.+.+... ..+++.+.+.+. +.|++||+||..
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhccccCcceeEEEecchh
Confidence 4799999999999999999999777632 222333333221 569999999987
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0024 Score=52.36 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=65.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
++|+|||+|||+ =++.|++.|...+..+++ +.+-..+.+.+.+.+++.++|.||+..-+..
T Consensus 1 ~~~~ilvlGGT~-Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyA- 78 (257)
T COG2099 1 SMMRILLLGGTS-DARALAKKLAAAPVDIILSSLTGYGAKLAEQIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYA- 78 (257)
T ss_pred CCceEEEEeccH-HHHHHHHHhhccCccEEEEEcccccccchhccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHH-
Confidence 367899999998 799999999999855544 3444567888999999999999998855431
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
.....|.+++|+..+++++-+-
T Consensus 79 -----------------a~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 79 -----------------ARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred -----------------HHHHHHHHHHHHHhCCcEEEEE
Confidence 2445789999999999876653
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=56.50 Aligned_cols=95 Identities=9% Similarity=-0.028 Sum_probs=66.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-------cEEEeec--CC--C--------Chh-----------hHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGSG--RL--E--------NRA-----------SLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~~--dl--~--------~~~-----------~~~~~~~~~~~ 63 (302)
..||.|+||+|++|+.++..|...|. +++.+.. +. . +.. ...+.+. ++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--da 80 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK--DV 80 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC--CC
Confidence 45999999999999999999998874 5555332 11 1 100 0112333 78
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-e-EEEEcC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-I-LINYAT 115 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~-~v~~SS 115 (302)
|+||.+||.. .....+..+.+..|....+.+.+.+++..- . ++.+-|
T Consensus 81 DvVVitAG~~-----~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 81 DAALLVGAFP-----RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred CEEEEeCCCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9999999965 234457788999999999999999998864 3 444434
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0018 Score=53.36 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=44.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHH-HhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEAD-IAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~~ 72 (302)
|+++|.| .|.+|+.+++.|.+.||+|++ +.+|-++++.++++ ++ ++|+++-+.+.
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~--~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID--DADAVVAATGN 76 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC--cCCEEEEeeCC
Confidence 6899998 799999999999999999988 55667777766665 44 78888866553
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=55.76 Aligned_cols=95 Identities=9% Similarity=0.037 Sum_probs=65.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-------cEEEeec------------CCCChh-----------hHHHHHhhcC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGSG------------RLENRA-----------SLEADIAAVK 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~~------------dl~~~~-----------~~~~~~~~~~ 62 (302)
.++||.|+|++|.+|+.++-.|...+. +++.+.. |+.+.. ...+.+. +
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~--d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK--D 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC--C
Confidence 456999999999999999998887653 4444322 111111 0112233 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEc
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG---LILINYA 114 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~S 114 (302)
+|+||-+||.. .....+..+.+..|....+.+.+..++.. ..++.+|
T Consensus 81 aDiVVitaG~~-----~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 81 ADVALLVGARP-----RGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred CCEEEEeCCCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 89999999965 23345778899999999999999999843 2344444
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0033 Score=54.42 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=65.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhhHH---------------------HHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRASLE---------------------ADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~~~---------------------~~~~~~~~d~Vi~~a~ 71 (302)
+||.|+|+ |.+|+.++..|+..| ++++++..+....+.+. +.+. ++|+||.+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~--~aDIVIitag 77 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCK--DADIVVITAG 77 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhC--CCCEEEEccC
Confidence 38999994 999999999999999 57877554422211111 1223 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
.. .....+..+.+..|....+.+.+.+++.+-. ++.+|
T Consensus 78 ~~-----~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 78 AP-----QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 65 2234566788899999999999999987543 44444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0012 Score=58.28 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=27.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~ 44 (302)
|++||+|+||||++|+.|++.|.++.. +++++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 457999999999999999999998764 66664
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.021 Score=43.55 Aligned_cols=179 Identities=13% Similarity=0.012 Sum_probs=93.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCCh-------hhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENR-------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~-------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.||+|.||-|-+|+.+++.+.+++|-|.- +.+|-+=. +.+.+.++..++|.||..|+--
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~CVAGGW 83 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFCVAGGW 83 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhhcccccceEEEeeccc
Confidence 38999999999999999999999987644 22221111 1123344555899999998854
Q ss_pred CCCCcc--hhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 74 GRPNVD--WCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 74 ~~~~~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
..++.. ...++.+..|+..+....--...+.++ .. -++.+.... ..+ ..|....||.
T Consensus 84 AGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~------------------gTPgMIGYGM 145 (236)
T KOG4022|consen 84 AGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG------------------GTPGMIGYGM 145 (236)
T ss_pred cCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC------------------CCCcccchhH
Confidence 221111 122344455554444222222222222 11 155544332 222 2234578999
Q ss_pred hHHHHHHHHHhhcCc-eEEeeecccCCCCCCchhhHHHHhcccccc-cccCCcccHhhHHHHHHHHHh
Q 022112 149 TKAMVEELLKNFENV-CTLRVRMPISSDLSNPRNFITKITRYEKVV-NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 149 ~K~~~E~~~~~~~~~-~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~-~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.|.+..++.+++... ..+.++...-. ..+-.+..-++.+-.+ ....+|.....++..++.-..
T Consensus 146 AKaAVHqLt~SLaak~SGlP~gsaa~~---ilPVTLDTPMNRKwMP~ADfssWTPL~fi~e~flkWtt 210 (236)
T KOG4022|consen 146 AKAAVHQLTSSLAAKDSGLPDGSAALT---ILPVTLDTPMNRKWMPNADFSSWTPLSFISEHFLKWTT 210 (236)
T ss_pred HHHHHHHHHHHhcccccCCCCCceeEE---EeeeeccCccccccCCCCcccCcccHHHHHHHHHHHhc
Confidence 999999999887433 22222111000 0000011111111111 135567888888887776553
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00084 Score=59.71 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=47.5
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEee-------------cCCCChhhH-HHHHhhc-
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGS-------------GRLENRASL-EADIAAV- 61 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~-------------~dl~~~~~~-~~~~~~~- 61 (302)
..+++||||| ||.+|..+++.|..+|.+|+++. .|+++.+++ +..+++.
T Consensus 184 ~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 263 (390)
T TIGR00521 184 EGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPGVKSIKVSTAEEMLEAALNELA 263 (390)
T ss_pred CCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCCcEEEEeccHHHHHHHHHHhhc
Confidence 4578999998 46899999999999999998843 445566666 4444222
Q ss_pred -CCCEEEEccccC
Q 022112 62 -KPTHVFNAAGVT 73 (302)
Q Consensus 62 -~~d~Vi~~a~~~ 73 (302)
++|++|++||..
T Consensus 264 ~~~D~~i~~Aavs 276 (390)
T TIGR00521 264 KDFDIFISAAAVA 276 (390)
T ss_pred ccCCEEEEccccc
Confidence 689999999987
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=56.89 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=45.3
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+.+++|.|+||.|.+|+.+++.|.+.|++|+++..+- .+...+.+. ++|+||-+..
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~--~~~~~~~~~--~aDlVilavP 151 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD--WDRAEDILA--DAGMVIVSVP 151 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc--chhHHHHHh--cCCEEEEeCc
Confidence 3567999999999999999999999999998876542 234555666 8999998755
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0097 Score=51.65 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=64.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHH----------------HHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLE----------------ADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~----------------~~~~~~~~d~Vi~~a~ 71 (302)
.+||.|+|+ |.+|+.++-.|...|. ++..+..+-.... ++. +.++ ++|+||-+|+
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~--~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCK--DADLVVITAG 82 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhC--CCCEEEEecC
Confidence 359999997 9999999999999886 5655433211110 011 2233 7899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
... ....+..+.+..|....+.+++.+++.+.. ++.+|
T Consensus 83 ~~~-----k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 83 APQ-----KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 752 233466788899999999999999987543 44444
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0025 Score=50.76 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||-|+| .||+|..++..|.+.||+|+++..|
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCC
Confidence 7999997 8999999999999999999995555
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=54.34 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=51.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC-CChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL-ENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIR 90 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl-~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~ 90 (302)
|++||.|.||||++|..|++.|.++.+ ++..+...- .+.......+. ++|+||-+....
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~--~~DvvFlalp~~----------------- 61 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLN--AADVAILCLPDD----------------- 61 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhc--CCCEEEECCCHH-----------------
Confidence 567999999999999999999999873 333332221 11112223334 789999775422
Q ss_pred HhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 91 TNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 91 ~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
....++..+.+.++++|=+|+..
T Consensus 62 ----~s~~~~~~~~~~g~~VIDlSadf 84 (313)
T PRK11863 62 ----AAREAVALIDNPATRVIDASTAH 84 (313)
T ss_pred ----HHHHHHHHHHhCCCEEEECChhh
Confidence 11234455556677777777753
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0041 Score=54.44 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=60.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCC-----------h----------hhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLEN-----------R----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~-----------~----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..+|+|+|+ |.+|+.+++.|...|. +++++..|.-+ . +...+.+++.++++-+....
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 348999995 8899999999999997 77776666321 1 12233444444554433322
Q ss_pred cCCCCCcchhhhhHHHHHH---------HhHHHHHHHHHHHHHhCCeEEEEcCCcccc
Q 022112 72 VTGRPNVDWCESHKVETIR---------TNVVGTLTLADVCRDKGLILINYATGCIFE 120 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~---------~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~ 120 (302)
.. . ...+....++ .|...-..+.++|.+.++++|+.++...||
T Consensus 103 ~~----~--~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G 154 (339)
T PRK07688 103 QD----V--TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYG 154 (339)
T ss_pred cc----C--CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeee
Confidence 11 0 1111111121 244444457788999999999988766655
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0032 Score=54.54 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=29.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+|+|.|+| .|.+|+.++..|+++|++|+++..+
T Consensus 2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 46899999 8999999999999999999986554
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=56.32 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=25.6
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSID 40 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~ 40 (302)
.+.+||.|.||||++|..|++.|.+++|.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 34579999999999999999999998774
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0028 Score=55.54 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT 42 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~ 42 (302)
||+|.||||++|..|++.|.+++|.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~ 27 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPID 27 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChh
Confidence 589999999999999999999888743
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0079 Score=49.95 Aligned_cols=96 Identities=23% Similarity=0.181 Sum_probs=71.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-------cEEE---eecCCC------------ChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTY---GSGRLE------------NRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~---~~~dl~------------~~~~~~~~~~~~~~d~Vi~~a 70 (302)
.+.||.|.||.|.||+.|.-.|..+.. ++.. +..|++ -.+.+++++. +.|+|+--|
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~--~advVvIPA 104 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALK--GADVVVIPA 104 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhc--CCCEEEecC
Confidence 456999999999999999987775531 1111 444433 3467889998 999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
|.. .......++.+.+|....+.|..++.+..-+ +|.+-|
T Consensus 105 GVP-----RKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIs 145 (345)
T KOG1494|consen 105 GVP-----RKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVIS 145 (345)
T ss_pred CCC-----CCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeec
Confidence 976 3455677889999999999999999987543 444433
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=55.19 Aligned_cols=82 Identities=24% Similarity=0.271 Sum_probs=52.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-ecCC------C-------C-----hh--hHHHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-SGRL------E-------N-----RA--SLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~~dl------~-------~-----~~--~~~~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+||||++|..+++.|.++ +++++.+ ..+- . . .+ +..+.+. ++|+||-+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 58999999999999999999987 4566632 1110 0 0 00 1222333 78999877653
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccc
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy 119 (302)
. ....++..+.+.|+++|=+|+..=+
T Consensus 79 ~---------------------~s~~~~~~~~~~G~~VIDlS~~fR~ 104 (346)
T TIGR01850 79 G---------------------VSAELAPELLAAGVKVIDLSADFRL 104 (346)
T ss_pred h---------------------HHHHHHHHHHhCCCEEEeCChhhhc
Confidence 2 2234666666678778888876433
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0099 Score=50.94 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=65.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEee----------cCCCChhhH------------HHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGS----------GRLENRASL------------EADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~----------~dl~~~~~~------------~~~~~~~~~d~Vi~~a 70 (302)
|||.|+|| |+||+.++-.|+.++. +++.+. .|+.+.... -+.+. +.|+|+-+|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~--~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLK--GADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhc--CCCEEEEeC
Confidence 58999998 9999999999987763 455421 122111110 12334 889999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
|.. .+...+..+.+..|....+.+.+...+.+-. ++.+-|
T Consensus 78 G~p-----rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 78 GVP-----RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCC-----CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 865 3455678889999999999999999987654 444334
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0084 Score=51.82 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=65.4
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC--cEEE--------eecCCCCh------------hhHHHHHhhcCCCEEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI--DFTY--------GSGRLENR------------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~--~V~~--------~~~dl~~~------------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
||.|+|++|.||+.++-.|..++. +++. ...|+.+. +++.+.+. ++|+||-+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~--daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALK--GADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcC--CCCEEEEeCCCC
Confidence 689999999999999999988875 4443 22233221 11234555 899999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
. ....+..+.+..|....+.+.+..++.+-. ++.+|
T Consensus 79 ~-----~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 79 R-----KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred C-----CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 2 234567788999999999999999887644 44444
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=50.55 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=62.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhh----HH----------------HHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRAS----LE----------------ADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~----~~----------------~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+|+ |.+|..++..|+.+| .+|.++..+....+. +. +.+. ++|+||-+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~--~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCK--GADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhC--CCCEEEEccCC
Confidence 68999996 999999999999999 577775554221111 11 2233 78899999986
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 109 (302)
.. ....+.......|+.....+.+.+++.+-.
T Consensus 78 ~~-----~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~ 109 (308)
T cd05292 78 NQ-----KPGETRLDLLKRNVAIFKEIIPQILKYAPD 109 (308)
T ss_pred CC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 52 223456677888999999999998887543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=46.13 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
||+|-++| .|-+|+.+++.|+++|++|++...+
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccc
Confidence 68999999 7999999999999999999885433
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0094 Score=44.84 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=24.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEee
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGS 45 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~ 45 (302)
.||+|.| .|-+|+.+++.|...|. +++++.
T Consensus 3 ~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIG-AGGVGSEVAKNLARSGVGKITLVD 33 (135)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEEEEC-cCHHHHHHHHHHHHhCCCceeecC
Confidence 5899999 67899999999999997 455533
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0081 Score=49.67 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=53.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE-eecC--CC---Ch------hh----H-H-HHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY-GSGR--LE---NR------AS----L-E-ADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~-~~~d--l~---~~------~~----~-~-~~~~~~~~d~Vi~~a~~~ 73 (302)
+||||.|.|++|-+|+.|++.+.+.+ +++.+ +... .. |. .. + . ..+...++|++|.+..+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~ 80 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE 80 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch
Confidence 47899999999999999999999876 45444 1111 00 00 00 0 0 112233789999986643
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
++...++.|.+.+++.|.=+|
T Consensus 81 ---------------------~~~~~l~~~~~~~~~lVIGTT 101 (266)
T COG0289 81 ---------------------ATLENLEFALEHGKPLVIGTT 101 (266)
T ss_pred ---------------------hhHHHHHHHHHcCCCeEEECC
Confidence 234578899998877666544
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0024 Score=51.02 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=27.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
||++.|.| +|.||+.|++.|.+.||+|++-..+
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCC
Confidence 56677666 9999999999999999999885433
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0078 Score=51.55 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=51.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC-CChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhH
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL-ENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNV 93 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl-~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~ 93 (302)
||.|.|||||.|..|++.|..+.+ ++..+..+- .+..+..+.+. ++|+||.+....
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~--~~D~vFlalp~~-------------------- 60 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLN--AADVAILCLPDD-------------------- 60 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhc--CCCEEEECCCHH--------------------
Confidence 799999999999999999999863 454444332 11223344445 789999776532
Q ss_pred HHHHHHHHHHHHhCCeEEEEcCC
Q 022112 94 VGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 94 ~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
....++..+.+.++++|=+|+.
T Consensus 61 -~s~~~~~~~~~~g~~VIDlSad 82 (310)
T TIGR01851 61 -AAREAVSLVDNPNTCIIDASTA 82 (310)
T ss_pred -HHHHHHHHHHhCCCEEEECChH
Confidence 1123445555567777777765
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.02 Score=49.59 Aligned_cols=92 Identities=20% Similarity=0.107 Sum_probs=62.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh-----------------------hhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR-----------------------ASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~-----------------------~~~~~~~~~~~~d~Vi~~ 69 (302)
||||.|+|+ |.+|+.++..|...|. +|+++..+-... .+. +.+. ++|+||.+
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~--~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIA--GSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHC--CCCEEEEC
Confidence 579999997 9999999999998876 777744321100 011 1233 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
++... ....+..+.+..|......+++...+...+ +|.+|
T Consensus 78 ~~~p~-----~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 78 AGVPR-----KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred CCCCC-----CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 88652 222345666778888888888888776433 55554
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.008 Score=59.72 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=43.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-Cc-------------EEE--------------------eecCCCChhhHHHHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-ID-------------FTY--------------------GSGRLENRASLEADI 58 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~-------------V~~--------------------~~~dl~~~~~~~~~~ 58 (302)
.+++|+|+|| |++|+..++.|.+.+ .+ |++ +..|..|.+++.+.+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence 3568999995 999999999998753 22 443 344667777777777
Q ss_pred hhcCCCEEEEccccC
Q 022112 59 AAVKPTHVFNAAGVT 73 (302)
Q Consensus 59 ~~~~~d~Vi~~a~~~ 73 (302)
. ++|+||.+....
T Consensus 647 ~--~~DaVIsalP~~ 659 (1042)
T PLN02819 647 S--QVDVVISLLPAS 659 (1042)
T ss_pred c--CCCEEEECCCch
Confidence 7 799999987743
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHH-hCCCc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQ-AQSID 40 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~-~~g~~ 40 (302)
||+|.|.||||++|+.|.+.|+ +....
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~ 28 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFD 28 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCC
Confidence 4799999999999999999555 45555
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.023 Score=49.24 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=62.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecC----------CCCh------------hhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGR----------LENR------------ASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~d----------l~~~------------~~~~~~~~~~~~d~Vi~~ 69 (302)
.+||.|+|+ |.||+.++-.|+..|. +++.+..+ +.+. .+.+ .+. ++|+||-+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~--~adivvit 78 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTA--NSKVVIVT 78 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhC--CCCEEEEC
Confidence 459999995 9999999999988875 34442211 0000 0111 233 88999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
||... ....+..+.+..|....+.+.+..++.+-+ ++.+|
T Consensus 79 aG~~~-----k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 79 AGARQ-----NEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 99652 233466788899999999999999988644 44444
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=47.76 Aligned_cols=101 Identities=24% Similarity=0.238 Sum_probs=59.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecCCCCh---------------------hhHHHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGRLENR---------------------ASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~dl~~~---------------------~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
.+|+|.|++| +|+++++.|...|.. ++++..|.-+. +...+.+++..+++-|..-..
T Consensus 20 s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~ 98 (198)
T cd01485 20 AKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98 (198)
T ss_pred CcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 4899999766 999999999999965 66655442211 123344555566665543211
Q ss_pred CCCCCcchhhhhHHHHH---------HHhHHHHHHHHHHHHHhCCeEEEEcCCcccc
Q 022112 73 TGRPNVDWCESHKVETI---------RTNVVGTLTLADVCRDKGLILINYATGCIFE 120 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~---------~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~ 120 (302)
. ......+....+ ..+......+-+.|++.++++|+.++...||
T Consensus 99 ~----~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 99 D----SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIG 151 (198)
T ss_pred c----cccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 1 000011111111 0123344557789999999999998866666
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.013 Score=52.63 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=31.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++|+|||||++..+|..+++.|.+.|++|+++..+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999999999999987554
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.021 Score=46.21 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=26.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.| .|-+|+.+++.|...|. +++++..|
T Consensus 22 ~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 22 SHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4799999 78899999999999996 67775555
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0079 Score=51.74 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
+|+||.|.||+||.|..|.+.|..+. .++..
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~ 32 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELIL 32 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEE
Confidence 57899999999999999999999886 34433
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=47.95 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=58.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec------CCC-----------ChhhHHHHHhhc---CCC-EEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG------RLE-----------NRASLEADIAAV---KPT-HVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~------dl~-----------~~~~~~~~~~~~---~~d-~Vi~~a~ 71 (302)
+.++|+|.|++|-+|+.+++.+.+.+.+++.... |+. .+.++.+.+... .+| ++|.+..
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~ 89 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTL 89 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCC
Confidence 3469999999999999999999998888777211 111 124455555443 799 8998754
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
+. .+...++.|.+.++++|.-+|+
T Consensus 90 P~---------------------a~~~~~~~~~~~g~~~VvGTTG 113 (286)
T PLN02775 90 PD---------------------AVNDNAELYCKNGLPFVMGTTG 113 (286)
T ss_pred hH---------------------HHHHHHHHHHHCCCCEEEECCC
Confidence 32 2335778899999888776663
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0054 Score=45.46 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
|++|.. .+..|||-|+| +|-+|.+|++.|.+.||+|..
T Consensus 1 ~~~~~~----~~~~l~I~iIG-aGrVG~~La~aL~~ag~~v~~ 38 (127)
T PF10727_consen 1 MNTPAT----QAARLKIGIIG-AGRVGTALARALARAGHEVVG 38 (127)
T ss_dssp ---------------EEEEEC-TSCCCCHHHHHHHHTTSEEEE
T ss_pred CCcccc----CCCccEEEEEC-CCHHHHHHHHHHHHCCCeEEE
Confidence 566644 23457999999 599999999999999999887
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0089 Score=51.39 Aligned_cols=87 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------ee-cC-----CCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------GS-GR-----LENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------~~-~d-----l~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
+++|-|.||||.+|+.+++.|.++...+.. .. .+ +.-++...+.....++|+||.+++-.
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~--- 77 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGS--- 77 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchH---
Confidence 468999999999999999999997544331 01 11 11122222222222799999998733
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCC
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~ 123 (302)
..+.+...+++.| .+.++.++.|-..+
T Consensus 78 ------------------~s~~~~p~~~~~G--~~VIdnsSa~Rm~~ 104 (334)
T COG0136 78 ------------------VSKEVEPKAAEAG--CVVIDNSSAFRMDP 104 (334)
T ss_pred ------------------HHHHHHHHHHHcC--CEEEeCCcccccCC
Confidence 1134667777777 45555555565444
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.036 Score=39.01 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=59.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHh
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 92 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n 92 (302)
+|||+||-.-.-..+-+.+.+.|.+.+.. .++-.....+...+. ++|.||.+....+
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~--~aD~VIv~t~~vs------------------ 60 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIK--KADLVIVFTDYVS------------------ 60 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcC--CCCEEEEEeCCcC------------------
Confidence 48999986677778888899999988887 222223334777888 8999998877652
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 93 VVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
-..+..+-+.|++.++++++..+.
T Consensus 61 H~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 61 HNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred hHHHHHHHHHHHHcCCcEEEECCC
Confidence 233456788999999999888654
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.016 Score=50.13 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=62.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC--CCC--------h-------------hhHHHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR--LEN--------R-------------ASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d--l~~--------~-------------~~~~~~~~~~~~d~Vi~~a 70 (302)
|||.|+|+ |++|..++..|+.+|+ +|+.+..+ +.. . .++.+ +. ++|.||-++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVVITA 77 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEEEcC
Confidence 68999995 9999999999999887 67763321 000 0 01111 22 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
+... ....+..+.+..|......+++...+..-. +|.+|
T Consensus 78 g~p~-----~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 78 GLPR-----KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCCC-----CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8652 223355668888999999999988887433 44444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.017 Score=43.04 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=27.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++++++| +| .|.+++..|.+.|++|+++..+
T Consensus 17 ~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELG-IG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECC
Confidence 46899999 67 8999999999999999986655
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.016 Score=50.43 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=63.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCC----------C-------------hhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLE----------N-------------RASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~----------~-------------~~~~~~~~~~~~~d~Vi~ 68 (302)
+.+||.|+|| |.+|+.++..|...| .+++.+..|-. + ..+.+ .+. ++|+||-
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEEEE
Confidence 3569999996 999999999999888 56665433210 0 01122 334 8899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
+++... ....+..+.+..|......+++.+.+..-+ ++++|
T Consensus 80 tag~~~-----~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs 122 (319)
T PTZ00117 80 TAGVQR-----KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT 122 (319)
T ss_pred CCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 998652 123345677788888888888888887533 45554
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.022 Score=47.03 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~ 43 (302)
.+|+|.| .|-+|+++++.|...|. ++++
T Consensus 22 ~~VlivG-~GglGs~va~~La~~Gvg~i~l 50 (228)
T cd00757 22 ARVLVVG-AGGLGSPAAEYLAAAGVGKLGL 50 (228)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 4899999 67899999999999996 4444
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.009 Score=46.68 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|+|+|+++.+|..+++.|.++|.+|++..... +++.+.+. ++|+||.+.+..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---~~l~~~l~--~aDiVIsat~~~ 98 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---KNLKEHTK--QADIVIVAVGKP 98 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---hhHHHHHh--hCCEEEEcCCCC
Confidence 346999999877789999999999998888777653 45666777 899999987754
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.044 Score=49.58 Aligned_cols=94 Identities=10% Similarity=-0.008 Sum_probs=64.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-------CC--cEEEeecC----------CCChh-----------hHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-------SI--DFTYGSGR----------LENRA-----------SLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-------g~--~V~~~~~d----------l~~~~-----------~~~~~~~~~~~ 63 (302)
.-||.|+|++|.||.+++-.|+.. |. +++.+..+ +.|.. .--+.+. ++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k--da 177 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ--DA 177 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC--cC
Confidence 358999999999999999999987 54 34442221 11111 0012233 78
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH-hCC--eEEEEc
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD-KGL--ILINYA 114 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~--~~v~~S 114 (302)
|+||-+||.. .....+..+.++.|....+.+.+...+ .+- ++|.+|
T Consensus 178 DiVVitAG~p-----rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs 226 (444)
T PLN00112 178 EWALLIGAKP-----RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG 226 (444)
T ss_pred CEEEECCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC
Confidence 9999999965 233457788999999999999999988 443 344444
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.039 Score=49.04 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=64.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-----cEEE--eecCCCChh------hHH-----------------HHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-----DFTY--GSGRLENRA------SLE-----------------ADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-----~V~~--~~~dl~~~~------~~~-----------------~~~~~~~~ 63 (302)
.-||.|+||+|.+|.+++-.|...+. ++.+ +..|..... ++. +.+. ++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k--da 121 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE--DA 121 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC--CC
Confidence 45999999999999999999998774 2333 212322110 111 2222 78
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEc
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG---LILINYA 114 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~S 114 (302)
|+||-+||.. .....+..+.+..|+...+.+.+...++. .++|.+|
T Consensus 122 DIVVitAG~p-----rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 122 DWALLIGAKP-----RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred CEEEECCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 9999999965 23345678899999999999999998843 3344444
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0076 Score=51.29 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=45.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|++|.+|+.++..|+++|..|++... ...++.+.++ ++|+||++.+..
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~---~t~~L~~~~~--~aDIvI~AtG~~ 213 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHS---RTQNLPELVK--QADIIVGAVGKP 213 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC---CchhHHHHhc--cCCEEEEccCCC
Confidence 4569999999999999999999999998877665 3345666777 899999998743
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0074 Score=52.31 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=43.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..|||.|+| +|.+|+.+++.|.+.||+|++...+- ..++.++++ +.|+||-+..
T Consensus 3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~--~~~~~~~~~--~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS--GLSLAAVLA--DADVIVSAVS 56 (308)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC--CCCHHHHHh--cCCEEEEECC
Confidence 457999998 79999999999999999998876653 245667777 7899987644
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.024 Score=49.69 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=27.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL 48 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl 48 (302)
..+|+|+|+ |-+|+++++.|...|. +++++..|.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 358999995 6799999999999997 677766663
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.034 Score=41.18 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=60.1
Q ss_pred EEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHH-----
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI----- 89 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~----- 89 (302)
|.|.|+||-||.....-+.+.+ ++|+++.+ -.+.+.+.+.+++++|..|+-.-. ..........
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa-~~n~~~L~~q~~~f~p~~v~i~~~--------~~~~~l~~~~~~~~~ 71 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSA-GSNIEKLAEQAREFKPKYVVIADE--------EAYEELKKALPSKGP 71 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSTHHHHHHHHHHHT-SEEEESSH--------HHHHHHHHHHHHTTS
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEc-CCCHHHHHHHHHHhCCCEEEEcCH--------HHHHHHHHHhhhcCC
Confidence 6899999999999999999987 77888777 677888999999999998874411 1111111111
Q ss_pred HHh-HHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 90 RTN-VVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 90 ~~n-~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
.+. ..|...+.+.+....+..|....+
T Consensus 72 ~~~v~~G~~~l~~~~~~~~~D~vv~Ai~ 99 (129)
T PF02670_consen 72 GIEVLSGPEGLEELAEEPEVDIVVNAIV 99 (129)
T ss_dssp SSEEEESHHHHHHHHTHTT-SEEEE--S
T ss_pred CCEEEeChHHHHHHhcCCCCCEEEEeCc
Confidence 111 236677888887776665555443
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.033 Score=42.29 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=25.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
||+|.| .|-+|+.+++.|...|. +++++..|
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 589999 58899999999999997 46665444
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0035 Score=40.06 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=32.9
Q ss_pred HHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 238 YRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 238 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+.++.|.++++.--+ ...........|++|++++|| +..+++++| ++..++.++|+
T Consensus 2 ~e~vtG~~i~~~~~~------rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i-~~~w~W~~~np 59 (62)
T PF13950_consen 2 FEKVTGKKIPVEYAP------RRPGDPAHLVADISKAREELGWKPKYSLEDMI-RDAWNWQKKNP 59 (62)
T ss_dssp HHHHHTS---EEEE---------TT--SEE-B--HHHHHHC----SSSHHHHH-HHHHHHHHHST
T ss_pred cHHHHCCCCCceECC------CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHH-HHHHHHHHHCc
Confidence 567788886642111 112222356899999999999 566999999 99999998876
|
... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.028 Score=45.29 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=56.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecCCCCh-------------------hhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGRLENR-------------------ASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~dl~~~-------------------~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
.+|+|.|++| +|+++++.|...|.. ++++..|.-+. +...+.+++..|++-|+.-...-
T Consensus 22 s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~ 100 (197)
T cd01492 22 ARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197)
T ss_pred CcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4899999666 999999999999964 66655442221 12233444445555444321110
Q ss_pred CCCcchhhhhHHH--HHHHhHHHHHHHHHHHHHhCCeEEEEcCCcccc
Q 022112 75 RPNVDWCESHKVE--TIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120 (302)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~ 120 (302)
............. .-..|......+-+.|++.++++|+.++...||
T Consensus 101 ~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G 148 (197)
T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFG 148 (197)
T ss_pred cccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEE
Confidence 0000000000000 000122333457788999999999988766555
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.024 Score=47.94 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh-CCCcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA-QSIDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~ 44 (302)
||||.|+|++|.+|+.+++.+.+ .+.+++++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav 32 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAA 32 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999999987 46787774
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=51.51 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC-CcEEEe
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS-IDFTYG 44 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~ 44 (302)
|||.|+|++|++|++|++.|.+++ .+++.+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v 31 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKV 31 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEE
Confidence 589999999999999999998876 466653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.1 Score=47.22 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=28.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|+|.|+| .|++|..++..|.+.||+|+++..|
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECC
Confidence 5899998 8999999999999999999996554
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=51.22 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=46.5
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhCC-CcEEE----------------eecCCCChhhHHHHHh--hcCCCEEEEccc
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY----------------GSGRLENRASLEADIA--AVKPTHVFNAAG 71 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~----------------~~~dl~~~~~~~~~~~--~~~~d~Vi~~a~ 71 (302)
-+..++|||.||+|.+|+..++.+...| ..|++ ...|..+++..+.... ..++|+|++|.+
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG 234 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence 3456799999999999999999999999 55555 3455666444433333 337999999999
Q ss_pred cC
Q 022112 72 VT 73 (302)
Q Consensus 72 ~~ 73 (302)
..
T Consensus 235 ~~ 236 (347)
T KOG1198|consen 235 GS 236 (347)
T ss_pred CC
Confidence 64
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0056 Score=50.26 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=29.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+||+|.+|+.++..|.+.|++|++...+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 689999999999999999999999999886554
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.066 Score=47.09 Aligned_cols=91 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecC----------CCChh------------hHHHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGR----------LENRA------------SLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~d----------l~~~~------------~~~~~~~~~~~d~Vi~~a 70 (302)
+||.|+|+ |.||+.++-.|+..+. ++..+..+ +.+.. +. +.+. ++|+||-+|
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~--daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTA--GSDLCIVTA 113 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhC--CCCEEEECC
Confidence 69999995 9999999999998875 44443221 11110 01 1123 889999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
|... ....+..+.+..|+...+.+.+..++.+-. ++.+|
T Consensus 114 G~~~-----k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 114 GARQ-----IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCCC-----CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9652 233466788899999999999999887544 44444
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0045 Score=49.67 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=27.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
|||.|+||+|.+|+.+++.|.+.|+.|+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~ 29 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI 29 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999974
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=50.89 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc---EEEeecC--------CCCh----hhHHHH-HhhcCCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID---FTYGSGR--------LENR----ASLEAD-IAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~~d--------l~~~----~~~~~~-~~~~~~d~Vi~~a~~~~~~ 76 (302)
+.++|.|.||||++|..|++.|.++.|. +..+..+ +... +++.+. +. ++|+||.+++..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~--~~Dvvf~a~p~~--- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWS--QAQLAFFVAGRE--- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhcc--CCCEEEECCCHH---
Confidence 4579999999999999999999985433 3332111 1000 011111 13 689999876532
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCcccc
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFE 120 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~ 120 (302)
....++..+.+.|+++|=.|+..=+.
T Consensus 78 ------------------~s~~~~~~~~~~g~~VIDlS~~fRl~ 103 (336)
T PRK08040 78 ------------------ASAAYAEEATNAGCLVIDSSGLFALE 103 (336)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECChHhcCC
Confidence 12235566666677777777754333
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.032 Score=46.57 Aligned_cols=59 Identities=19% Similarity=0.133 Sum_probs=39.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC---CcEEEeecCCC-----------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS---IDFTYGSGRLE-----------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~~dl~-----------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|.+||-|+| +|.||+.+++.|.+.+ +++.++...-. -.+++.+.+. .++|.|+-||+..
T Consensus 1 ~~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~-~~~DlVVE~A~~~ 73 (267)
T PRK13301 1 MTHRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLA-WRPDLVVEAAGQQ 73 (267)
T ss_pred CceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhh-cCCCEEEECCCHH
Confidence 356999998 9999999999987643 45555422111 0223444432 2899999999954
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.01 Score=54.36 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=39.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEee-------------------cCCCChhhHHHH-HhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS-------------------GRLENRASLEAD-IAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-------------------~dl~~~~~~~~~-~~~~~~d~Vi~~a 70 (302)
|+|+|+|+ |.+|..+++.|.+.|++|+++. +|.++...+.++ +. ++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAE--DADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCC--cCCEEEEec
Confidence 68999996 9999999999999999988843 444444444444 33 677777553
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.028 Score=49.42 Aligned_cols=86 Identities=12% Similarity=0.054 Sum_probs=52.4
Q ss_pred cEEEEEcCCcchHHHHHHHHH-hCCCcEEE---e--------ecCCC----ChhhHH--HHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQ-AQSIDFTY---G--------SGRLE----NRASLE--ADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~-~~g~~V~~---~--------~~dl~----~~~~~~--~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+|.|.||||.+|+.+.+.|. ++.+.+.- . ..... ....+. +.+. ++|++|.+++..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~--~vDivffa~g~~--- 75 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALK--ALDIIITCQGGD--- 75 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCccccccc--CCCEEEEcCCHH---
Confidence 479999999999999999999 66655221 0 00000 001111 1344 789999988732
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCC
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~ 123 (302)
.+..+...+++.|..-+.++.++.|-..+
T Consensus 76 ------------------~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~ 104 (366)
T TIGR01745 76 ------------------YTNEIYPKLRESGWQGYWIDAASSLRMKD 104 (366)
T ss_pred ------------------HHHHHHHHHHhCCCCeEEEECChhhhcCC
Confidence 23447777888886545555555565444
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.016 Score=48.86 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=49.7
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
+...|+++.| +|-+|+.++=.+...|.+|++ ...|..|.+.+..+++..+||.||-
T Consensus 10 ~~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 10 PQATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred CCCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeee
Confidence 3445899998 899999999999999999998 5677899999999999999999875
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.055 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.| .|.+|+.+++.|...|. +++++..|
T Consensus 25 ~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 25 SRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4899999 67799999999999985 34443333
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.02 Score=51.43 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=46.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
..|+|+|+| +|.+|..++..+.+.|++|+. +..|..|.+.+.+++++.++|.|+-..
T Consensus 11 ~~~~ilIiG-~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~ 83 (395)
T PRK09288 11 SATRVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEI 83 (395)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEee
Confidence 456999998 579999999999999999887 335567778888888888899998643
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.039 Score=48.27 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh-CCCc---EEEeec-------------CCC--ChhhHHHHHhhcCCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA-QSID---FTYGSG-------------RLE--NRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~-~g~~---V~~~~~-------------dl~--~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
.+||.|+||||++|+.|++.|.+ ...+ +..+.. ++. +. + ...+. ++|+||.+++..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~-~-~~~~~--~~Divf~a~~~~- 79 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA-K-INSFE--GVDIAFFSAGGE- 79 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC-C-HHHhc--CCCEEEECCChH-
Confidence 36999999999999999999995 5566 332111 110 00 1 12234 789999877632
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccc
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy 119 (302)
....++..+.+.|+++|=.||..=+
T Consensus 80 --------------------~s~~~~~~~~~~G~~VID~Ss~fR~ 104 (347)
T PRK06728 80 --------------------VSRQFVNQAVSSGAIVIDNTSEYRM 104 (347)
T ss_pred --------------------HHHHHHHHHHHCCCEEEECchhhcC
Confidence 1223555666667767767765433
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.031 Score=51.12 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=28.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+++++|||++| +|..+++.|++.|++|.+...+
T Consensus 5 ~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 5 NKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCC
Confidence 45899999988 9999999999999999886543
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.025 Score=51.76 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=29.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++++|+|+++ +|..+++.|+++|++|++...+
T Consensus 5 ~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999877 9999999999999999986554
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.012 Score=53.59 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL 48 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl 48 (302)
|+|.|+||+|.+|+.+++.|.+.|++|+++..+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 6899999999999999999999999998876653
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.015 Score=51.43 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=41.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
.++|.|+|.+|.+|+.+++.|.+. +++|+++..+-.......+.+. ++|.||-|.-.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~--~aDlVilavPv 61 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQ--RADVLIFSAPI 61 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhc--CCCEEEEeCCH
Confidence 358999999999999999999975 7888776543111233455666 89999977553
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.017 Score=43.47 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=42.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecCCCChhhHH-----------------HHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGRLENRASLE-----------------ADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~dl~~~~~~~-----------------~~~~~~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |..|+.++.+|.+.|.. |+++.++....+.+. +.+. ++|+||++.+..
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~--~~DivI~aT~~~ 86 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQ--EADIVINATPSG 86 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHH--TESEEEE-SSTT
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHh--hCCeEEEecCCC
Confidence 3569999995 77999999999999987 777665543333333 3334 789999997755
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.087 Score=44.00 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=25.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.|+ |-+|+.+++.|...|. +++++..|
T Consensus 33 ~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 33 ARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 48999996 8899999999999995 45554444
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.04 Score=46.59 Aligned_cols=91 Identities=16% Similarity=0.082 Sum_probs=62.6
Q ss_pred EEEEcCCcchHHHHHHHHHhCC----CcEEEeecCCCCh----------------------hhHHHHHhhcCCCEEEEcc
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQS----IDFTYGSGRLENR----------------------ASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g----~~V~~~~~dl~~~----------------------~~~~~~~~~~~~d~Vi~~a 70 (302)
|.|+||+|.+|..++..|+..| .+++.+..+-... +++.+.+. ++|+||-++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~--~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK--DADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC--CCCEEEECC
Confidence 5799998999999999999988 5677643331110 11233444 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
+... ............|+...+.+.+.+++..-. ++.+|
T Consensus 79 ~~~~-----~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 79 GVGR-----KPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CCCC-----CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 8662 123345667788899999999999887533 44443
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.023 Score=49.86 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||-|.| +||+|...+..|.+.||+|+.+..|
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 7999998 9999999999999999999996666
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.029 Score=43.35 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=42.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|.+..+|+.|+..|.++|..|+.....- ..+.+.++ +.|+||-++|..
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---~~l~~~~~--~ADIVVsa~G~~ 90 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---KNLQEITR--RADIVVSAVGKP 90 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---SSHHHHHT--TSSEEEE-SSST
T ss_pred CCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---Ccccceee--eccEEeeeeccc
Confidence 457999999999999999999999999998865553 34566777 899999998866
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.19 Score=43.83 Aligned_cols=97 Identities=22% Similarity=0.175 Sum_probs=62.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh-----------------------hhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR-----------------------ASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~-----------------------~~~~~~~~~~~~d~Vi~~ 69 (302)
++||.|+| +|.+|+.++..|+..|. +++.+..|-... .+. +.+. ++|+||.+
T Consensus 6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~--~aDiVI~t 81 (321)
T PTZ00082 6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIA--GSDVVIVT 81 (321)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhC--CCCEEEEC
Confidence 35899999 69999999999999995 665543321100 011 2333 88999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
++....+......-+..+.+..|....+.+++.+.+..-+ ++.+|
T Consensus 82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9876311110000145667778888888888888887544 55554
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.023 Score=50.67 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=43.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
||+|+|+|+ |++|+.++..+.+.|++|++ +.+|..|.+.+.++++ .+|+|..
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~--~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAE--QCDVITY 69 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHh--cCCEEEe
Confidence 568999995 89999999999999999988 3456778888888888 7888753
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.086 Score=44.46 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=26.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~d 47 (302)
.+|+|.| .|.+|+++++.|...| -+++++..|
T Consensus 31 s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 31 AHICVVG-IGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4799998 6789999999999999 567775555
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.019 Score=46.41 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=29.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
..|+++|+|. |.+|+.+++.|.+.|++|++...+
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4579999995 799999999999999999875444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.035 Score=50.22 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=29.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+|||.|+| .|++|..++..|+++||+|+++..|
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCC
Confidence 47999998 7999999999999999999997655
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.1 Score=44.38 Aligned_cols=32 Identities=25% Similarity=0.246 Sum_probs=24.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|+|.| .|.+|+.+++.|...|.. ++++..|
T Consensus 28 s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 28 SRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4799999 577999999999999954 4444444
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.033 Score=47.29 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=46.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|+++.+|+.++..|..+|..|+..... ...+.+.+. ++|+||-+.+..
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~---t~~l~~~~~--~ADIVIsAvg~p 212 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR---SKDMASYLK--DADVIVSAVGKP 212 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---chhHHHHHh--hCCEEEECCCCC
Confidence 35699999999999999999999999999886653 234667777 899999998865
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.028 Score=51.16 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=46.6
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEeecCCC-------------ChhhHHHHHh-hcC
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGSGRLE-------------NRASLEADIA-AVK 62 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~~dl~-------------~~~~~~~~~~-~~~ 62 (302)
.++|||||+| ||-.|..|++.+..+|.+|+.+.+... ...++.+.++ ..+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~ 334 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEAALP 334 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHhhCC
Confidence 5679999976 799999999999999999999775422 1233444443 346
Q ss_pred CCEEEEccccC
Q 022112 63 PTHVFNAAGVT 73 (302)
Q Consensus 63 ~d~Vi~~a~~~ 73 (302)
.|++|++|+..
T Consensus 335 ~Di~I~aAAVa 345 (475)
T PRK13982 335 ADIAIFAAAVA 345 (475)
T ss_pred CCEEEEecccc
Confidence 79999999976
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.027 Score=48.31 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=28.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.++++|+|| |.+|+.++..|.+.|.. |+++.++
T Consensus 126 ~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 126 GKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 468999998 78999999999999986 8776555
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.12 Score=42.80 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=25.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.| .|-+|+++++.|...|. +++++..|
T Consensus 28 ~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 28 AKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4799999 67799999999999995 45555444
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.093 Score=46.40 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|+|.| .|-+|+.+++.|...|.. ++++..|
T Consensus 29 ~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 29 AKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4899999 577999999999999864 5554443
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.027 Score=47.74 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=45.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++|.|+|.+|.+|..++..|+++|+.|++..-. ...+.+..+ ++|+||-+.+..
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---t~~l~~~~~--~ADIVI~avg~~ 212 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---TRNLAEVAR--KADILVVAIGRG 212 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---CCCHHHHHh--hCCEEEEecCcc
Confidence 45799999999999999999999999999886322 234666777 899999998865
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.16 Score=43.91 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=62.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC--cEEEeecC----------CCChhh------------HHHHHhhcCCCEEEEccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGR----------LENRAS------------LEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~d----------l~~~~~------------~~~~~~~~~~d~Vi~~a~ 71 (302)
||.|+|+ |+||+.++..|+.++. +++.+..+ +.+... --+.+. ++|+||-+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~--~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCA--DADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhC--CCCEEEECCC
Confidence 5889997 9999999999998874 45553221 111000 012233 7899999999
Q ss_pred cCCCCCcchhhhh--HHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 72 VTGRPNVDWCESH--KVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 72 ~~~~~~~~~~~~~--~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
... ....+ ..+.+..|....+.+.+.+++++-. ++.+-|.
T Consensus 78 ~~~-----kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 78 PSI-----DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 752 12223 4788899999999999999998754 4444443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.037 Score=47.28 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=46.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++|.|+|.+|.+|+.++..|+++|+.|++....-. ++.+..+ ++|+||-+.+..
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---~l~e~~~--~ADIVIsavg~~ 213 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---DAKALCR--QADIVVAAVGRP 213 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---CHHHHHh--cCCEEEEecCCh
Confidence 3579999999999999999999999999988754432 4666677 889999988854
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.071 Score=46.02 Aligned_cols=31 Identities=26% Similarity=0.160 Sum_probs=24.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
||||.|+ |.+|..+++.|...|. +++++..|
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 5899995 7899999999999995 45554444
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.21 Score=45.26 Aligned_cols=95 Identities=9% Similarity=-0.062 Sum_probs=67.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC---C--CcEEEeecCCC-Chh-------hHH-----------------HHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ---S--IDFTYGSGRLE-NRA-------SLE-----------------ADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~---g--~~V~~~~~dl~-~~~-------~~~-----------------~~~~~~~~d 64 (302)
-+|+||||+|+||-+|+-.+++- | ..|.++-.|+. +.+ ++. +.+. ++|
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~--daD 201 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFK--DAH 201 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhC--CCC
Confidence 48999999999999999988862 3 34666555652 111 111 2223 789
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEcCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG---LILINYATG 116 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~SS~ 116 (302)
+||-+|+.. .....+..+.++.|....+.+.++..+.. .+++++.|.
T Consensus 202 vvIitag~p-----rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tN 251 (452)
T cd05295 202 VIVLLDDFL-----IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRT 251 (452)
T ss_pred EEEECCCCC-----CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 999999965 23445778889999999999999998875 456555543
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=42.13 Aligned_cols=79 Identities=23% Similarity=0.236 Sum_probs=48.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC--CCcEEEe-ecCCCC------------hhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYG-SGRLEN------------RASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~-~~dl~~------------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
|+|.|+| +|.||..+++.+.+. +.+..++ ..|..+ ..++.+.+. .+|.|+-+|+..
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~--~~DlvVEaAS~~------ 71 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIA--EVDLVVEAASPE------ 71 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhh--ccceeeeeCCHH------
Confidence 5799998 899999999988865 3444432 222111 122445554 889999998843
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
..+.....+-+.|+.++.+|.++
T Consensus 72 ---------------Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 72 ---------------AVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred ---------------HHHHHhHHHHhcCCCEEEEechh
Confidence 22233444445566677777644
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.032 Score=49.82 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=46.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
||+|+| +|+.|..+++.+.+.|++|++ +..|..|.+.+.+.+++.++|.|+-...
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e 71 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIE 71 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccC
Confidence 689999 699999999999999999887 3356678888888888888999986543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.17 Score=43.70 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=61.4
Q ss_pred EEEEcCCcchHHHHHHHHHhCC--CcEEEeecCC----------CChhhH-----------HHHHhhcCCCEEEEccccC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRL----------ENRASL-----------EADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl----------~~~~~~-----------~~~~~~~~~d~Vi~~a~~~ 73 (302)
|.|+|+ |.+|+.++..|+..| .+++++..+- .+.... .+.+. ++|+||-+|+..
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~--~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAA--DADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhC--CCCEEEEcCCCC
Confidence 468885 889999999999988 5677643321 111000 12334 789999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
. ....+.......|+...+.+.+.+++.+-. ++.+|
T Consensus 78 ~-----~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 78 R-----KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred C-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2 233466778889999999999999987643 44444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.15 Score=40.17 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=26.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-EEEeecCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGRL 48 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~dl 48 (302)
||+|.| .|-+|+.+++.|...|.. ++++..|.
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999 588999999999999974 77755553
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=46.00 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|||+| .|-+|+.+++.|...|.. ++++..|
T Consensus 43 ~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 43 ARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 4799999 677999999999999864 5553333
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.083 Score=50.85 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=25.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~d 47 (302)
.+|+|.|. | +|+.++.+|...|. +++++..|
T Consensus 108 ~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 108 LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 48999998 8 99999999999984 56664443
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.12 Score=47.40 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
.+++|+|.|+ |.+|..+++.|.+.|++|+++.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid 261 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIE 261 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEE
Confidence 3578999995 9999999999999999988843
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.18 Score=41.06 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=26.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|+|.| .|-+|+.+++.|...|.. ++++..|
T Consensus 29 ~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4799999 588999999999999975 6665555
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.048 Score=41.87 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=40.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCCChhhH----------------HHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLENRASL----------------EADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~~~~~~----------------~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++++|+|+ |.+|..+++.|.+.| ++|++...+....+.+ .+.++ ++|+||.+....
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~ 92 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVG 92 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCC
Confidence 468999996 999999999999986 7787755443222221 11223 789999988765
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.11 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=29.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+.|||.|+| +|.+|+.++..|+..|++|++...+
T Consensus 3 ~i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 3 MIMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CcCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 456899997 8999999999999999999986554
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=43.31 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC----C-----------------hhhHHHHHhhcCCC-EEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE----N-----------------RASLEADIAAVKPT-HVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~----~-----------------~~~~~~~~~~~~~d-~Vi~~a~~~ 73 (302)
+|+|.|++|-+|+.+++.+.+.+.+++....|.. | ...+...+. ..+| ++|.+..+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~-~~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFA-KYPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHh-hcCCEEEEECCChH
Confidence 7999999999999999999988888877422211 1 223444443 2488 888775432
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
.+...++.|.+.++++|.=+|
T Consensus 81 ---------------------~~~~n~~~~~~~gv~~ViGTT 101 (275)
T TIGR02130 81 ---------------------AVNDNAAFYGKHGIPFVMGTT 101 (275)
T ss_pred ---------------------HHHHHHHHHHHCCCCEEEcCC
Confidence 122357888888888777555
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.18 Score=42.62 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=37.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCCC--------------hhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLEN--------------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~~--------------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
||||.|+|. |.+|+.+++.|.+. +.++.++...-.. ..+++++ ..++|+|+.|++..
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l--~~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL--PQRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh--ccCCCEEEECCCHH
Confidence 579999996 99999999999876 4566553311011 1112222 34799999998743
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.15 Score=45.31 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=26.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|+| .|-+|+.+++.|...|. +++++..|
T Consensus 42 ~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 42 ARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4799999 57799999999999995 66664444
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.045 Score=46.43 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=42.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh--------------hcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA--------------AVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~--------------~~~~d~Vi~~a~~~ 73 (302)
.++++|+|+ |.+|+.++..|.+.|++|++...+....+.+.+.+. ..++|+||++....
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAG 189 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCC
Confidence 468999997 889999999999999988886655333233222211 02679999998764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=41.50 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=25.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.| .|-+|+++++.|...|. +++++..|
T Consensus 12 ~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4899999 67799999999999996 55554444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.044 Score=47.18 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=41.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|+|+|.|+| .|.+|+.+++.|.+.|++|.+...+.... ++..+.++ ++|+||-+..
T Consensus 1 ~~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~--~~d~vi~~vp 67 (296)
T PRK11559 1 MTMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAE--QCDVIITMLP 67 (296)
T ss_pred CCceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEeCC
Confidence 467999998 79999999999999999998754432111 22344555 7898887754
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.036 Score=48.32 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=29.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
||||.|+| .|.+|+.++..|.+.|++|+++..+
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 57999999 6999999999999999999886554
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.042 Score=54.47 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=83.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------eecCCCChhhHHHHHhhc----C
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------GSGRLENRASLEADIAAV----K 62 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------~~~dl~~~~~~~~~~~~~----~ 62 (302)
+.++|+||-|..|..|++.|..+|.+-.+ -+-|++..+.....+++. .
T Consensus 1769 ksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl~~ 1848 (2376)
T KOG1202|consen 1769 KSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKLGP 1848 (2376)
T ss_pred ceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhccc
Confidence 46999999999999999999999876443 234444444444555432 5
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHhC--Ce-EEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDKG--LI-LINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+..|||+|+.-.-+-. +....+.....+.-+.++.+|=+.-++.. .. ||.+||.+ .|-.
T Consensus 1849 vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvs-cGRG---------------- 1911 (2376)
T KOG1202|consen 1849 VGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVS-CGRG---------------- 1911 (2376)
T ss_pred ccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeec-ccCC----------------
Confidence 6789999986510000 01223444555566677888877777653 24 88888854 2211
Q ss_pred CCCCCCchhhhHHHHHHHHHh
Q 022112 139 PNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
+...+.||.+-..+|++++.
T Consensus 1912 -N~GQtNYG~aNS~MERiceq 1931 (2376)
T KOG1202|consen 1912 -NAGQTNYGLANSAMERICEQ 1931 (2376)
T ss_pred -CCcccccchhhHHHHHHHHH
Confidence 12347899999999999865
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.056 Score=47.03 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=43.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
|++|.|+| .|++|+-++..-...|++|++ +..+.+|.+.++++.+ ++|+|=
T Consensus 1 ~~tvgIlG-GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~--~~DViT 67 (375)
T COG0026 1 MKTVGILG-GGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAA--KCDVIT 67 (375)
T ss_pred CCeEEEEc-CcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHh--hCCEEE
Confidence 46899999 699999999999999999988 4555778888998888 888874
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.072 Score=40.22 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=45.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++|+|.|.+.-+|..|+..|.++|..|+....+- .++++.++ +.|+|+-..+..
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---~~l~~~v~--~ADIVvsAtg~~ 82 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---IQLQSKVH--DADVVVVGSPKP 82 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---cCHHHHHh--hCCEEEEecCCC
Confidence 456999999999999999999999999888765432 24566777 899999888754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.022 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=29.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|||||.|+| +|.+|..++..|.+.|++|+++..
T Consensus 1 ~~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLG-AGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred CCceEEEEC-CCHHHHHHHHHHHhcCCcEEEEec
Confidence 578999998 899999999999999999998654
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.065 Score=45.81 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=44.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee-cCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS-GRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++|.|+|.+|.+|..++..|+++|+.|++.. .. .++.+.++ ..|+||-+.+..
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT----~~l~e~~~--~ADIVIsavg~~ 212 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT----RDLPAVCR--RADILVAAVGRP 212 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC----CCHHHHHh--cCCEEEEecCCh
Confidence 467999999999999999999999999998863 22 13566677 789999887754
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.1 Score=44.18 Aligned_cols=56 Identities=25% Similarity=0.217 Sum_probs=37.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEEe-ecCCC------------ChhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYG-SGRLE------------NRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~-~~dl~------------~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
||||.|+| +|.+|+.+++.|.+.+ +++.++ ..+.. -.+++++.+. ++|+|+.++..
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~ 71 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASV 71 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCCh
Confidence 47999999 7999999999998763 554442 12110 0123444554 89999999753
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.067 Score=48.70 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=44.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|+|||||+| +|.-...|+..|.+.|++|.. +..|..|.+.+.+++++.++|.||-.
T Consensus 1 ~~~kVLvlG-~G~re~al~~~l~~~g~~v~~~~~~~Npg~~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~ 72 (435)
T PRK06395 1 MTMKVMLVG-SGGREDAIARAIKRSGAILFSVIGHENPSIKKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVG 72 (435)
T ss_pred CceEEEEEC-CcHHHHHHHHHHHhCCCeEEEEECCCChhhhhcccceeecCCCCHHHHHHHHHHhCCCEEEEC
Confidence 578999999 677788888899988876655 23445677788888888899999854
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.19 Score=41.22 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=22.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-EEE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-FTY 43 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-V~~ 43 (302)
+|+|.| -|.+|++.++.|.+.|.. +++
T Consensus 32 ~V~VvG-iGGVGSw~veALaRsGig~itl 59 (263)
T COG1179 32 HVCVVG-IGGVGSWAVEALARSGIGRITL 59 (263)
T ss_pred cEEEEe-cCchhHHHHHHHHHcCCCeEEE
Confidence 799999 577999999999999864 444
|
|
| >PRK12767 carbamoyl phosphate synthase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.19 Score=43.86 Aligned_cols=54 Identities=9% Similarity=-0.074 Sum_probs=37.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecC-----------------CCCh---hhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGR-----------------LENR---ASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~d-----------------l~~~---~~~~~~~~~~~~d~Vi~~ 69 (302)
||||||||+++-+ .+++.|.+.| ++|++...+ ..+. +.+.+.+++.++|.|+-+
T Consensus 1 ~~~vLv~g~~~~~--~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~ 76 (326)
T PRK12767 1 MMNILVTSAGRRV--QLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPL 76 (326)
T ss_pred CceEEEecCCccH--HHHHHHHHhccCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEEC
Confidence 6899999987665 8899999984 888873222 1222 345566667788888854
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.17 Score=43.61 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
+|+|.|+| +|--|.+|+..|.++||+|+..-.
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng~~V~lw~r 32 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNGHEVRLWGR 32 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcCCeeEEEec
Confidence 47999999 688899999999999999998444
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.2 Score=44.68 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.| +|-+|+.++..|...|. +++++..|
T Consensus 136 ~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4799998 57799999999999996 56665555
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.061 Score=48.83 Aligned_cols=53 Identities=13% Similarity=-0.031 Sum_probs=42.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
|||+|+| +|..+..|++.+.+.|+.+.+ +..|..|.+.+.+..++.++|.||-
T Consensus 1 ~kiliiG-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~vi~ 70 (423)
T TIGR00877 1 MKVLVIG-NGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAISITDIEALVEFAKKKKIDLAVI 70 (423)
T ss_pred CEEEEEC-CChHHHHHHHHHHhCCCccEEEEECCCHHHhhhcccccccCCCCCHHHHHHHHHHhCCCEEEE
Confidence 6999999 566799999999998765443 2356778888888898889999884
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.25 Score=43.07 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS 38 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g 38 (302)
++||.|.|+ |-||+.+.+.|.+++
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~ 24 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESG 24 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcC
Confidence 468999999 999999999999853
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.14 Score=46.24 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=60.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh-------------------hhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR-------------------ASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~-------------------~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
.+|+|.|++| +|..+++.|...|. .++++..|.-+. +.+.+.+++.++|+-++.-...
T Consensus 21 s~VlliG~gg-lGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~- 98 (425)
T cd01493 21 AHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEES- 98 (425)
T ss_pred CeEEEEcCcH-HHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecc-
Confidence 3799999655 99999999999996 466644442221 1234445555677655543211
Q ss_pred CCCcchhhhhHHHHH---------HHhHHHHHHHHHHHHHhCCeEEEEcCCccccC
Q 022112 75 RPNVDWCESHKVETI---------RTNVVGTLTLADVCRDKGLILINYATGCIFEY 121 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~---------~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~ 121 (302)
+..........+ ..+......+.+.|++.++++|+.+|.+.||.
T Consensus 99 ---~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~ 151 (425)
T cd01493 99 ---PEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGY 151 (425)
T ss_pred ---cchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEE
Confidence 100000001110 01122234577889999999999999887774
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.095 Score=45.19 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=45.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..+++.|+| .|-||+.+++.|..-|++|+++...... ..++++++. ++|+|+.+...+
T Consensus 121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~--~aDiv~~~lp~t 184 (303)
T PRK06436 121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMK--KSDFVLISLPLT 184 (303)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHh--hCCEEEECCCCC
Confidence 457899998 8999999999888889999886543211 235777887 889998887755
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.072 Score=45.19 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=46.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|.|.++.+|+.|+..|.++|..|+..... ..++.+.++ +.|+||-+++..
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---t~~l~~~~~--~ADIVV~avG~~ 212 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---TRDLAAHTR--QADIVVAAVGKR 212 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---CCCHHHHhh--hCCEEEEcCCCc
Confidence 35699999999999999999999999999875433 234667777 899999988855
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.19 Score=41.55 Aligned_cols=31 Identities=26% Similarity=0.150 Sum_probs=24.4
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
||||.| .|.+|..+++.|...|.. ++++..|
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589998 677999999999999854 5554444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.1 Score=44.42 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|||.| .|-+|..+++.|...|.. ++++..|
T Consensus 20 s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 20 SNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred CcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3799999 566999999999999964 5554444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.37 Score=41.54 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=58.8
Q ss_pred EEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChh----hHH------------------HHHhhcCCCEEEEccccC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRA----SLE------------------ADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~----~~~------------------~~~~~~~~d~Vi~~a~~~ 73 (302)
|.|+|| |.+|+.++..|+.+|. +|+++..|-.-.. ++. +.+. ++|+||-+++..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~--dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIA--GSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhC--CCCEEEEecCCC
Confidence 468997 9999999999998876 8877554421100 001 1122 789999998865
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
. ....+..+....|....+.+++.+.+.... +|.+|
T Consensus 78 ~-----~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 78 R-----KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred C-----CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 122344456677888888888888886533 44444
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.12 Score=44.28 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=28.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++|.|+| .|.+|..++..|+++|++|+++..|
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4799999 5999999999999999999986555
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.18 Score=36.39 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=39.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC-------------------------CCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR-------------------------LENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d-------------------------l~~~~~~~~~~~~~~~d~Vi 67 (302)
-+||||.| .|-++..+++.|.+.|++++++..+ ..+.+.+.+++++.++|.++
T Consensus 2 ikkvLIan-rGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~ 79 (110)
T PF00289_consen 2 IKKVLIAN-RGEIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH 79 (110)
T ss_dssp SSEEEESS--HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccc
Confidence 35899998 8999999999999999998883222 24556666666666666655
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.22 Score=43.30 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=28.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++|.|+| +|-+|+.++..|+..|++|+++..+
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35899998 6999999999999999999986554
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.17 Score=44.77 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=45.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC--CCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|++|.|.|+||-||......+.+. .++|+++.++. +.+.+.+..++++|.+|+..
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~~~f~p~~v~i~ 57 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQAREFRPKYVVVA 57 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHHHhCCCEEEEc
Confidence 468999999999999999888765 57888888764 67778888888899888653
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.1 Score=44.33 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=30.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN 50 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~ 50 (302)
++|+|+|.| .|.+|+.+++.|.++|+.|.++..|...
T Consensus 2 ~~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 2 ASMKVGIVG-LGLMGGSLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CCcEEEEEC-CchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence 456788887 9999999999999999999886666543
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.073 Score=45.38 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=42.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCCChhhHHHHHh------------h--cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLENRASLEADIA------------A--VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~~~~~~~~~~~------------~--~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|.+.| .+|+++.++....+.+.+.+. + .++|+||++....
T Consensus 122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g 196 (278)
T PRK00258 122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG 196 (278)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence 3458999995 999999999999999 788887666443333322211 0 2679999987755
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.069 Score=42.25 Aligned_cols=58 Identities=19% Similarity=0.097 Sum_probs=43.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC----------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN----------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~----------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|.|+| .|-||+.+++.|..-|.+|+++...... ..++++++. .+|+|+.+...+
T Consensus 35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~--~aDiv~~~~plt 102 (178)
T PF02826_consen 35 RGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLA--QADIVSLHLPLT 102 (178)
T ss_dssp TTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHH--H-SEEEE-SSSS
T ss_pred CCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcc--hhhhhhhhhccc
Confidence 356999998 7999999999999999999996655432 234677777 789988777655
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.24 Score=42.89 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=29.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++++|.|+| .|.+|+.++..|++.|++|+++..+
T Consensus 3 ~~~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 3 PIQNLAIIG-AGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECC
Confidence 456899998 6999999999999999999886554
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.44 Score=42.42 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=24.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC---CcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS---IDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~ 43 (302)
|.+||.|-|+ |-||+.+.+.|.+++ .+|++
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evva 91 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVA 91 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEE
Confidence 4479999999 999999999998763 45654
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.1 Score=44.33 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=46.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|.+..+|+.|+..|.++|..|++....-. ++.+..+ +.|+||.++|..
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~---~l~~~~~--~ADIvv~AvG~p 218 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD---DLKKYTL--DADILVVATGVK 218 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC---CHHHHHh--hCCEEEEccCCc
Confidence 3569999999999999999999999999988664433 3556666 899999998865
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.34 Score=41.34 Aligned_cols=80 Identities=13% Similarity=0.039 Sum_probs=53.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecC--------CCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGR--------LENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~d--------l~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
-||+|.|.||.+|+.+.+.|+..|..++. +... +.-..++.++.+..++|.++-+....
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~------------ 74 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP------------ 74 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH------------
Confidence 38999999999999999999999888444 2222 11234566666632378877664422
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.+..+++.|.+.++| .|.+|+
T Consensus 75 ---------~v~~~l~e~~~~Gvk~avIis~ 96 (286)
T TIGR01019 75 ---------FAADAIFEAIDAGIELIVCITE 96 (286)
T ss_pred ---------HHHHHHHHHHHCCCCEEEEECC
Confidence 223466777778888 556665
|
ATP citrate lyases appear to form an outgroup. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.24 Score=44.47 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~ 43 (302)
.+|+|.| .|-+|+.+++.|...|.. +++
T Consensus 39 ~~VlivG-~GGlG~~va~~La~~Gvg~l~l 67 (390)
T PRK07411 39 ASVLCIG-TGGLGSPLLLYLAAAGIGRIGI 67 (390)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHcCCCEEEE
Confidence 4799999 577999999999999964 444
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.11 Score=44.01 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=45.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|.+..+|+.++..|+++|..|++.... ...+.+.++ +.|+||-+++..
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~---t~~l~~~~~--~ADIvV~AvG~p 211 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHIL---TKDLSFYTQ--NADIVCVGVGKP 211 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCC---cHHHHHHHH--hCCEEEEecCCC
Confidence 35799999999999999999999999998875432 234667777 899999988865
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.31 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID 40 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~ 40 (302)
.+|+|.| .|.+|+.++..|...|..
T Consensus 333 srVlVvG-lGGlGs~ia~~LAraGVG 357 (989)
T PRK14852 333 SRVAIAG-LGGVGGIHLMTLARTGIG 357 (989)
T ss_pred CcEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 4899999 677999999999999864
|
|
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.13 Score=36.22 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=39.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEE-------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTY-------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~-------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
|||||+| +|-=-.+|+..|.+.. .+|.. +..+.+|.+.+.++.++.++|.||
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvv 67 (100)
T PF02844_consen 1 MKVLVIG-SGGREHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVV 67 (100)
T ss_dssp EEEEEEE-SSHHHHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEE
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEE
Confidence 7999999 6766778888888764 34544 344678889999999999999998
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.1 Score=47.85 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=44.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-------------------------CCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-------------------------RLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-------------------------dl~~~~~~~~~~~~~~~d~Vi 67 (302)
||+||||.| +|.+|..+++.+.+.|++++++.. +..|.+.+.++.+..++|.|+
T Consensus 1 ~~k~iLi~g-~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~ 79 (451)
T PRK08591 1 MFDKILIAN-RGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIH 79 (451)
T ss_pred CcceEEEEC-CCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEE
Confidence 467999997 799999999999999999887311 123445566676777899998
Q ss_pred Eccc
Q 022112 68 NAAG 71 (302)
Q Consensus 68 ~~a~ 71 (302)
-..+
T Consensus 80 p~~~ 83 (451)
T PRK08591 80 PGYG 83 (451)
T ss_pred ECCC
Confidence 6553
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=50.60 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=44.1
Q ss_pred cccEEEEEcCCcc----------hHHHHHHHHHhCCCcEEEeecCC-----------------CChhhHHHHHhhcCCCE
Q 022112 13 KPLKFLIYGRTGW----------IGGLLGKLCQAQSIDFTYGSGRL-----------------ENRASLEADIAAVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~----------iG~~l~~~L~~~g~~V~~~~~dl-----------------~~~~~~~~~~~~~~~d~ 65 (302)
..+||||+|+.+. -|..+++.|.+.|++|+++..+. .+.+.+.+++++.++|.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~ 85 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDA 85 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCE
Confidence 3569999997664 27899999999999999844331 23456777788889999
Q ss_pred EEEccc
Q 022112 66 VFNAAG 71 (302)
Q Consensus 66 Vi~~a~ 71 (302)
|+-..+
T Consensus 86 Iip~~g 91 (1068)
T PRK12815 86 LLATLG 91 (1068)
T ss_pred EEECCC
Confidence 996543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=43.93 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=46.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+++++|+|.+..+|+.|+..|+.+|..|+.....- ..+.+.++ +.|+||.++|..
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---~~l~~~~~--~ADIvi~avG~p 213 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---KNLRHHVR--NADLLVVAVGKP 213 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---CCHHHHHh--hCCEEEEcCCCc
Confidence 56999999999999999999999999998865443 34666777 899999999865
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.067 Score=45.65 Aligned_cols=32 Identities=34% Similarity=0.322 Sum_probs=28.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|+|.|+| .|.+|..++..|.+.|++|+++..+
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899998 8999999999999999999886554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.1 Score=44.62 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=41.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-------------hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-------------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-------------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.++++|+|+ |.+|+.+++.|...|.+|++...+... .+++.+.+. +.|+||++..
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~--~aDiVint~P 218 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVA--EIDIVINTIP 218 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhc--cCCEEEECCC
Confidence 468999995 889999999999999998885554221 223445555 8899999754
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.32 Score=44.49 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=47.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-------------------------CCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-------------------------RLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-------------------------dl~~~~~~~~~~~~~~~d~Vi 67 (302)
.++||||.| .|.++-.+++.+.+.|++++++.. +..|.+.+.++.++.++|.|+
T Consensus 3 ~~k~ili~~-~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~ 81 (445)
T PRK08462 3 EIKRILIAN-RGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIF 81 (445)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEE
Confidence 367999999 799999999999999999888311 334566777888888999999
Q ss_pred Ecccc
Q 022112 68 NAAGV 72 (302)
Q Consensus 68 ~~a~~ 72 (302)
-..+.
T Consensus 82 pg~g~ 86 (445)
T PRK08462 82 PGYGF 86 (445)
T ss_pred ECCCc
Confidence 77653
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.27 Score=41.77 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=38.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC--CCcEEEe-ecCC-------------CChhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYG-SGRL-------------ENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~-~~dl-------------~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
+|||.|+| .|.||+.+++.|.+. ++++.++ ..+. .-..++++++. ++|+|+-++..
T Consensus 6 ~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~--~~D~Vvi~tp~ 77 (271)
T PRK13302 6 ELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLAT--HADIVVEAAPA 77 (271)
T ss_pred eeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCEEEECCCc
Confidence 47999999 799999999999873 6777652 1221 01123455555 78999988764
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.21 Score=45.30 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=27.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.|||-|+| .|++|..++..|.+ ||+|+++..|
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~-~~~V~g~D~~ 37 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGK-SRQVVGFDVN 37 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhc-CCEEEEEeCC
Confidence 47999998 89999999999877 6999996665
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.15 Score=43.23 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=46.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++++.|+|.+..+|+.|+..|+++|..|+...-. ...+.+.++ +.|+||-++|..
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---t~~l~~~~~--~ADIvI~AvG~p 212 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---TKNLAELTK--QADILIVAVGKP 212 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---chhHHHHHH--hCCEEEEecCCC
Confidence 45799999999999999999999999988875432 244667777 899999988865
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.29 Score=42.61 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=27.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..+|||+||+|.+|..+++.+...|.+|++..
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~ 170 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAA 170 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe
Confidence 45899999999999999999999999887643
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.13 Score=44.34 Aligned_cols=55 Identities=22% Similarity=0.318 Sum_probs=41.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-------------hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-------------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-------------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.+|++|+|. |.+|..++..|...|.+|++...+... .+.+.+.+. ++|+||+++.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~--~aDiVI~t~p 219 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVG--KIDIIFNTIP 219 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhC--CCCEEEECCC
Confidence 569999995 889999999999999998886555221 123445555 7899999753
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.25 Score=42.34 Aligned_cols=32 Identities=16% Similarity=0.330 Sum_probs=28.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+|.|+| +|.+|..++..|+..|++|+++..+
T Consensus 6 ~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVG-AGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred cEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECC
Confidence 3899998 5999999999999999999995554
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.48 Score=41.36 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
++||.|.|. |-+|+.+.+.+.+++ .++.+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~iva 31 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQ 31 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEE
Confidence 479999998 999999999988754 56655
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.056 Score=42.86 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
||.|+|| |.+|+.++..++..|++|+++..|
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECC
Confidence 6899995 999999999999999999997665
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.15 Score=44.65 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=43.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..|+|.|+| .|.||+.+++.|...|++|+++..+... ..++.++++ ++|+|+-+...+
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~--~aDiVil~lP~t 209 (330)
T PRK12480 145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIK--DADIISLHVPAN 209 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHh--cCCEEEEeCCCc
Confidence 457999998 7999999999999999999986544211 124666777 889888665543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.14 Score=37.34 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=44.7
Q ss_pred cEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 15 LKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 15 ~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
++|.|+|++ +-.|..+.+.|.++|++|+.+.....+ ..++.+ . ...+|.++-+....
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~-p~~iDlavv~~~~~------------ 66 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-I-PEPIDLAVVCVPPD------------ 66 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-C-SST-SEEEE-S-HH------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccC-C-CCCCCEEEEEcCHH------------
Confidence 479999998 778999999999999999985444321 122333 1 23788887664421
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
.+..+++.|.+.+++.+.+
T Consensus 67 ---------~~~~~v~~~~~~g~~~v~~ 85 (116)
T PF13380_consen 67 ---------KVPEIVDEAAALGVKAVWL 85 (116)
T ss_dssp ---------HHHHHHHHHHHHT-SEEEE
T ss_pred ---------HHHHHHHHHHHcCCCEEEE
Confidence 2234777888888884443
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.15 Score=43.03 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=46.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++++.|+|.+..+|+.|+..|.++|..|+..+..- ..+.+..+ +.|+||-++|..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---~~l~~~~~--~ADIvIsAvGkp 212 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---KNLKEVCK--KADILVVAIGRP 212 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---CCHHHHHh--hCCEEEEcCCCc
Confidence 457999999999999999999999998887755332 34666677 899999998866
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.11 Score=35.01 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=27.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|++|.| +|++|-.++..|.+.|.+|+++...
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEecc
Confidence 588998 7999999999999999999885543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.47 Score=43.88 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=28.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.++|+|+| .|.+|..+++.|.++|++|+++..
T Consensus 16 ~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~ 47 (480)
T PRK01438 16 GLRVVVAG-LGVSGFAAADALLELGARVTVVDD 47 (480)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999 588999999999999999988653
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.25 Score=39.27 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=45.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec--------------CCC---C-hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG--------------RLE---N-RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~--------------dl~---~-~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|-+.-+|+.|+..|+++|..|+.... .-+ | ...+.+.++ +.|+||-++|..
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~--~ADIVIsAvG~~ 137 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLS--QSDVVITGVPSP 137 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhh--hCCEEEEccCCC
Confidence 4679999999999999999999999999887521 011 2 122666777 899999988866
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.37 Score=35.30 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=25.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhC-CCcEEEe
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG 44 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~-g~~V~~~ 44 (302)
|+.|+|++|.+|..+++.|.+. ++++.++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 5889999999999999999994 7788775
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.22 Score=50.71 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=40.9
Q ss_pred cccEEEEEcCCcc-hHH---------HHHHHHHhCCCcEEEeecCC-----------------CChhhHHHHHhhcCCCE
Q 022112 13 KPLKFLIYGRTGW-IGG---------LLGKLCQAQSIDFTYGSGRL-----------------ENRASLEADIAAVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~-iG~---------~l~~~L~~~g~~V~~~~~dl-----------------~~~~~~~~~~~~~~~d~ 65 (302)
.++||||+|+..+ ||. ++++.|.+.|++++++..+. ...+.+.++++..++|.
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dg 633 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKG 633 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCE
Confidence 4679999997654 554 45999999999998843331 12356667777778999
Q ss_pred EEEc
Q 022112 66 VFNA 69 (302)
Q Consensus 66 Vi~~ 69 (302)
||-.
T Consensus 634 VI~~ 637 (1068)
T PRK12815 634 VIVQ 637 (1068)
T ss_pred EEEe
Confidence 8853
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.2 Score=44.18 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=45.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC--CCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|++|.|.|+||-||.....-+.++ .++|+++.+ -.+.+.+.+.+++++|.+|+..
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa-~~n~~~L~~q~~~f~p~~v~i~ 57 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSA-GKNVALMVEQILEFRPKFVAID 57 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEc-CCCHHHHHHHHHHcCCCEEEEc
Confidence 468999999999999999887764 378888766 3478888888898999988764
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.16 Score=42.96 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|.+..+|+.|+..|.++|..|+..+.-- .++.+.++ +.|+||-++|..
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---~dl~~~~k--~ADIvIsAvGkp 212 (282)
T PRK14180 157 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---TDLKSHTT--KADILIVAVGKP 212 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---CCHHHHhh--hcCEEEEccCCc
Confidence 357999999999999999999999998887754322 33556667 899999998866
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.66 Score=39.48 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=27.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
+.+++|+||+|-+|+-..+...-+|++|+++.+
T Consensus 151 GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG 183 (340)
T COG2130 151 GETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG 183 (340)
T ss_pred CCEEEEEecccccchHHHHHHHhhCCeEEEecC
Confidence 458999999999999888777779999999544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 302 | ||||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 6e-05 |
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 5e-14
Identities = 62/316 (19%), Positives = 105/316 (33%), Gaps = 67/316 (21%)
Query: 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE----NRASLEADIAAVKPTHV 66
+K LI G G +G + K + ++++ + + N ++ KP V
Sbjct: 9 HHHHMKILITGANGQLGREIQKQLKGKNVEVI-PTDVQDLDITNVLAVNKFFNEKKPNVV 67
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
N A T VD CE + N +G LA G ++ +T +F+ ++ P
Sbjct: 68 INCAAHT---AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEP 124
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITK 185
E D N S Y KTK E +K +R + + NF+
Sbjct: 125 ------ITEFDEVNPQ-SAYGKTKLEGENFVKALNPKYYIVR----TAWLYGDGNNFVKT 173
Query: 186 ITRYEK------VVN----IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEIL 235
+ K VV+ P T +L + +++ G ++ T G+ S
Sbjct: 174 MINLGKTHDELKVVHDQVGTP---TSTVDLARVVLKVIDEKNYGTFHCTCKGICS----- 225
Query: 236 EMYRQYIDPNFTWKNFTLE--EQAKVIV-------------APR-SNNELDASKLKTEF- 278
W +F +E + V A R + L L+
Sbjct: 226 ------------WYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTG 273
Query: 279 PELLSIKESLIKYVFE 294
KESL +Y+
Sbjct: 274 DITREWKESLKEYIDL 289
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-13
Identities = 50/296 (16%), Positives = 98/296 (33%), Gaps = 71/296 (23%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR---------LENRASLEADIAAVKPTHV 66
+ LI G +G +G L +L + + L + LE I +P +
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVI 61
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
NAA +T +VD CE K + + N + + +++ +T +F+
Sbjct: 62 INAAAMT---DVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFD------ 112
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
G +KEED PN + ++Y +K + E ++ +R S + + F +
Sbjct: 113 -GEKGNYKEEDIPNPI-NYYGLSKLLGETFALQ-DDSLIIRT-----SGIFRNKGFPIYV 164
Query: 187 -----TRYEKVVN----IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEM 237
P +L +E+ + TGI + +
Sbjct: 165 YKTLKEGKTVFAFKGYYSP---ISARKLASAILELLELRKTGIIHVAGERI--------- 212
Query: 238 YRQYIDPNFTWKNFTLE--EQAKVIV------------APR-SNNELDASKLKTEF 278
+ L+ E+ + A R ++ LD+S+ +
Sbjct: 213 ---------SRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKIL 259
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 54/314 (17%), Positives = 112/314 (35%), Gaps = 57/314 (18%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR----------LENRASLEADIAAVKPTH 65
+ L+ G TG +G + K Q + R L + ++ I +P
Sbjct: 4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHV 63
Query: 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGH 125
+ + A D E+ + NV + LA G LI ++ +F+
Sbjct: 64 IVHCAAER---RPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFD----- 115
Query: 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEE-LLKNFENVCTLRVRMPI--SSDLSNPRNF 182
G+ ++EED P + + Y KTK E+ +L+N LR+ PI +
Sbjct: 116 --GTNPPYREEDIPAPL-NLYGKTKLDGEKAVLENNLGAAVLRI--PILYGEVEKLEESA 170
Query: 183 ITKI------TRYE-KVVN----IP-NSMTILDELLPISI-EMAKRNLTGIWNFTNPGVV 229
+T + + + + P + + ++ M ++ G ++++ +
Sbjct: 171 VTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQM 230
Query: 230 S-H---NEILEMYR---QYIDPNFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEF-PE 280
+ + I + + ++ P T A R N +LD SKL+T +
Sbjct: 231 TKYEMACAIADAFNLPSSHLRPI------TDSPVLG---AQRPRNAQLDCSKLETLGIGQ 281
Query: 281 LLSIKESLIKYVFE 294
+ + + ++
Sbjct: 282 RTPFRIGIKESLWP 295
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 6e-12
Identities = 54/314 (17%), Positives = 103/314 (32%), Gaps = 72/314 (22%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE----NRASLEADIAAVKPTHVFNAAG 71
+ +I G G +G L + + D Y + N + ++ + ++P + + A
Sbjct: 7 RVIITGANGQLGKQLQEELNPEEYDI-YPFDKKLLDITNISQVQQVVQEIRPHIIIHCAA 65
Query: 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGI 131
T VD E + N +G +A + G L+ +T +F+ D
Sbjct: 66 YT---KVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEG----- 117
Query: 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPIS---SDLSNPRNFITKIT 187
+ E P + + Y +K E+ +K +R S NF+ +
Sbjct: 118 -YDEFHNPAPI-NIYGASKYAGEQFVKELHNKYFIVR----TSWLYG--KYGNNFVKTMI 169
Query: 188 RYEK------VVN----IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEM 237
R K VV P T + +L + ++ +L G ++ +N G S
Sbjct: 170 RLGKEREEISVVADQIGSP---TYVADLNVMINKLIHTSLYGTYHVSNTGSCS------- 219
Query: 238 YRQYIDPNFTWKNFTLE--EQAKVIV-------------APR-SNNELDASKLKTEFPEL 281
W F + A + V A R + + L+
Sbjct: 220 ----------WFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQ 269
Query: 282 LSI-KESLIKYVFE 294
+ +E L ++ E
Sbjct: 270 MPSWEEGLERFFIE 283
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 1e-08
Identities = 44/315 (13%), Positives = 80/315 (25%), Gaps = 119/315 (37%)
Query: 24 GWIGGLLGKLCQAQSIDFT-YGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCE 82
++ + + S+ Y +E R L D +V R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVFAKYNV-------SRL------ 134
Query: 83 SHKVETIRT---------NVV-------GTLTLA-DVCRDKGLILINYATGCIFEYDSGH 125
+R NV+ G +A DVC + IF +
Sbjct: 135 -QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIF-W---- 186
Query: 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFI-- 183
+ K ++P E +L+ + + ++ +S + N
Sbjct: 187 -----LNLKNCNSP--------------ETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLR 226
Query: 184 -----TKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWN------F--------- 223
++ R K N + +L + N F
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLN---------------VQNAKAWNAFNLSCKILLT 271
Query: 224 T-NPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQ----AKVIVAPRSNNELDASKLKTE- 277
T V + + +I + T +E K + + L E
Sbjct: 272 TRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREV 322
Query: 278 ---FPELLS-IKESL 288
P LS I ES+
Sbjct: 323 LTTNPRRLSIIAESI 337
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 3e-04
Identities = 38/277 (13%), Positives = 90/277 (32%), Gaps = 79/277 (28%)
Query: 28 GLLGKLCQ--AQSIDF--TYGSGRLENRASLEADIAAVKPT---HVFNAAGVTGRPNVD- 79
++ + + + D +L +E+ + ++P +F+ V P+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLSVF-PPSAHI 387
Query: 80 --------WCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGI 131
W + K + + + + L+ I I
Sbjct: 388 PTILLSLIWFDVIKSDVMV--------VVNKLHKYSLVEKQPKESTISIPS--------I 431
Query: 132 GFKEEDTPNFVGSFYSKTKAMVE--ELLKNFENVCTLRVRMPISSDLSNPR------NFI 183
+ + + Y+ +++V+ + K F++ DL P + I
Sbjct: 432 YLELKVKLE---NEYALHRSIVDHYNIPKTFDS-----------DDLIPPYLDQYFYSHI 477
Query: 184 ----TKITRYEKVVNIPNSMTILDELLPIS-IEMAK-RNLTGIWNFTNPGVVSHNEILEM 237
I E++ M LD +E K R+ + WN + +++ + L+
Sbjct: 478 GHHLKNIEHPERMTLFR--MVFLD----FRFLE-QKIRHDSTAWNASG-SILNTLQQLKF 529
Query: 238 YRQYI---DPNF-----TWKNFTLEEQAKVIVAPRSN 266
Y+ YI DP + +F + + +I + ++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* Length = 299 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 4e-08
Identities = 52/296 (17%), Positives = 96/296 (32%), Gaps = 55/296 (18%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE------NRASLEADIAAVKPTHVFNA 69
L++G+TG +G L + E N + + ++P + NA
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNA 61
Query: 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGS 129
A T VD ES N +A + G +++Y+T +F P
Sbjct: 62 AAHT---AVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIP--- 115
Query: 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKI-- 186
++E D + + Y KTK E+ L++ R + NF +
Sbjct: 116 ---WQETDATSPLN-VYGKTKLAGEKALQDNCPKHLIFRTSWVYA---GKGNNFAKTMLR 168
Query: 187 ---TRYE-KVVN----IP-NSMTILDELLP-ISIEMAKRNLTGIWNFTNPGVVS-H---N 232
R V+N P + + D I + + K + G+++ G + H
Sbjct: 169 LAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAA 228
Query: 233 EILEMYRQYIDPNFTWKNFTLEEQAKVI---------VAPR-SNNELDASKLKTEF 278
+ + R+ ++ A R N+ L+ K + F
Sbjct: 229 LVFDEARK---------AGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNF 275
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 50 NRASLEADIAAVKPTHVFN-AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL 108
NR ++ + +F+ A ++ + E + N+ GT + + + +
Sbjct: 50 NRDEIDRAVEKYSIDAIFHLAGILSAK-----GEKDPALAYKVNMNGTYNILEAAKQHRV 104
Query: 109 ILINYA-TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160
+ T +F ++ T + + TK E L + +
Sbjct: 105 EKVVIPSTIGVFGPETPKN------KVPSITITRPRTMFGVTKIAAELLGQYY 151
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 50 NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES-----HKVETIRTNVVGTLTLADVCR 104
+ L + +P V + + + S V T NV+GTL + +
Sbjct: 88 DFEFLAESFKSFEPDSVVHFGE---QRSAP--YSMIDRSRAVYTQHNNVIGTLNVLFAIK 142
Query: 105 DKGLILINYATGCIFEYDSGH--------PLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156
+ G G + EY + + + P SFY +K
Sbjct: 143 EFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHN 202
Query: 157 LKNFENVCTLRV 168
+ +R
Sbjct: 203 IAFTCKAWGIRA 214
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 48 LENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107
+ + A + I ++P V + A P+ DW TN VG + +
Sbjct: 75 IADHALVNQLIGDLQPDAVVHTAASYKDPD-DW-----YNDTLTNCVGGSNVVQAAKKNN 128
Query: 108 LILINYA-TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154
+ Y T + P + + N S Y+ +K+ E
Sbjct: 129 VGRFVYFQTALCY---GVKP--IQQPVRLDHPRNPANSSYAISKSANE 171
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 17/117 (14%)
Query: 48 LENRASLEADIAAVKPTHVFN-AA--GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR 104
+ +E + K T ++ AA T N + N+ + ++ +
Sbjct: 54 ALDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFA-------WDLNMNSLFHVLNLAK 106
Query: 105 DKGLILINYA-TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160
K + I + + +F + + T + Y +K E + +
Sbjct: 107 AKKIKKIFWPSSIAVFGPTTPKE------NTPQYTIMEPSTVYGISKQAGERWCEYY 157
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVT---GRPNVDWCESHKVETIRTNVVGTLTLADV 102
G + + LE + KPTHV ++A D TNV G++ +A
Sbjct: 72 GSVTDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDA---------ATNVQGSINVAKA 122
Query: 103 CRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE 161
G+ L+N+ T + G P I D+P + Y +K E L +
Sbjct: 123 ASKAGVKRLLNFQTALCY----GRPATVPI---PIDSPTAPFTSYGISKTAGEAFLMMSD 175
Query: 162 -NVCTLR 167
V +LR
Sbjct: 176 VPVVSLR 182
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 21/125 (16%), Positives = 36/125 (28%), Gaps = 23/125 (18%)
Query: 45 SGRLENRASL-EADIAAV-------KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGT 96
+ N +D V + A G K+ N + T
Sbjct: 37 GNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRG---SQ----GKISEFHDNEILT 89
Query: 97 LTLADVCRDKGLILINYA-TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155
L D C + + I YA T Y + + + E++ P Y +K E
Sbjct: 90 QNLYDACYENNISNIVYASTISA--Y--SDE--TSLPWNEKELPLPD-LMYGVSKLACEH 142
Query: 156 LLKNF 160
+ +
Sbjct: 143 IGNIY 147
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 31/130 (23%), Positives = 46/130 (35%), Gaps = 27/130 (20%)
Query: 45 SGRLEN---RASL-EADI------AAVKPTHVFN-AAGVTGRPNVDWCESHK--VETIRT 91
SGR E A L D+ A +K VF+ AA P V S +
Sbjct: 35 SGRREFVNPSAELHVRDLKDYSWGAGIKGDVVFHFAA----NPEVR--LSTTEPIVHFNE 88
Query: 92 NVVGTLTLADVCRDKGLILINYA-TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150
NVV T + + R G+ + +A + ++ P E+ P S Y K
Sbjct: 89 NVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIP-------TPEEEPYKPISVYGAAK 141
Query: 151 AMVEELLKNF 160
A E + +
Sbjct: 142 AAGEVMCATY 151
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 28/145 (19%)
Query: 39 IDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLT 98
+ + + A LE + + V +AG W E + + + T
Sbjct: 58 PECRVAE--MLDHAGLERALRGL--DGVIFSAGYYPSRPRRW-----QEEVASALGQTNP 108
Query: 99 LADVCRDKG---LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN----FVGSFYSKTKA 151
C ++ + + + + G P E S Y K
Sbjct: 109 FYAACLQARVPRILYVG-SAYAMPRHPQGLPG-------HEGLFYDSLPSGKSSYVLCKW 160
Query: 152 MVEELLKNFE----NVCTLRVRMPI 172
++E + V M +
Sbjct: 161 ALDEQAREQARNGLPVVIGIPGMVL 185
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 25/125 (20%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTG------RPNVDWCESHKVETIRTNVVGTLTL 99
L ++ +E +PTHV + A P +D+ N++G L L
Sbjct: 50 VDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDF---------EVNLLGGLNL 100
Query: 100 ADVCRDKGLILINYA-TGC-IF-EYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156
+ CR G+ + +A TG I+ E G EE P S Y+ +KA E
Sbjct: 101 LEACRQYGVEKLVFASTGGAIYGEVPEGERA-------EETWPPRPKSPYAASKAAFEHY 153
Query: 157 LKNFE 161
L +
Sbjct: 154 LSVYG 158
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 33/218 (15%), Positives = 62/218 (28%), Gaps = 48/218 (22%)
Query: 64 THVF-NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA--TGCIFE 120
+ +AA V N NV GT L + L Y
Sbjct: 169 DLIVDSAAMV----NAFPYHELF----GPNVAGTAELIRIALTTKLKPFTYVSTADVGAA 220
Query: 121 YDSGHPLGSGIGFKEEDTPNFVGSF---YSKTKAMVEELLKNFENVCTLRV---RMP-IS 173
+ T G + Y +K E LL+ ++C L V R I
Sbjct: 221 IEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMIL 280
Query: 174 SDLS-----NPRNFITKITR-----------YEKVVNIPNSMTILDELLPI--------- 208
+D S N +++T++ + + + N + LP+
Sbjct: 281 ADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAV 340
Query: 209 ---SIEMAKRNLTGIWNFTNPGV--VSHNEILEMYRQY 241
+ + ++ NP + +E ++ +
Sbjct: 341 LGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA 378
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 45 SGRLENRASL-EADIA-------AVK-PTHVFNAAGV-TGRPNVDWCESHKVETIRTNVV 94
G E + D+A VK + + GV RP D ++ N++
Sbjct: 37 LGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVERPWND--------ILQANII 88
Query: 95 GTLTLADVCRDKGLILINYATGCIFEYDSGHPLGS--GIGFKEEDTPNFVGSFYSKTKAM 152
G L + R+ G I +A+ S H +G + + P S Y +K
Sbjct: 89 GAYNLYEAARNLGKPRIVFAS-------SNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCF 141
Query: 153 VEELLKNF 160
E+L +
Sbjct: 142 GEDLASLY 149
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 87 ETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSG--IGFKEEDTPNFVGS 144
+ ++ N++G L + R G I +A+ S H +G D P
Sbjct: 82 QILQGNIIGLYNLYEAARAHGQPRIVFAS-------SNHTIGYYPQTERLGPDVPARPDG 134
Query: 145 FYSKTKAMVEELLKNF 160
Y +K E L + +
Sbjct: 135 LYGVSKCFGENLARMY 150
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 5e-04
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 46 GRLENRASLEADIAAVKPTHVFN-AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR 104
L E + +P +F+ AA V+G +D+ + +++ N+ GT L D R
Sbjct: 71 ADLSAPGEAEK-LVEARPDVIFHLAAIVSGEAELDFDKGYRI-----NLDGTRYLFDAIR 124
Query: 105 DKGLILINYATGCIFEYDS-----GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN 159
+ S G PL I ++ + Y KA+ E LL +
Sbjct: 125 IAN---GKDGYKPRVVFTSSIAVFGAPLPYPI---PDEFHTTPLTSYGTQKAICELLLSD 178
Query: 160 FENVCTLRVR 169
+
Sbjct: 179 YSRRGFFDGI 188
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 18/144 (12%), Positives = 35/144 (24%), Gaps = 36/144 (25%)
Query: 40 DFTYGSGRLEN-----RASL-EADI--------AAVKPTHVFNAAGVTGRPNVDWCESHK 85
+ N E I + +VF+ A
Sbjct: 65 NLLSA--EKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLA----------TYHGN 112
Query: 86 -------VETIRTNVVGTLTLADVCRDKGLI--LINYATGCIFEYDSGHPLGSGIGFKEE 136
+ N + TL L + + + ++ A GC + +
Sbjct: 113 QSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSI-AEKTFDDAKATEETDI 171
Query: 137 DTPNFVGSFYSKTKAMVEELLKNF 160
+ + S YS +K E +
Sbjct: 172 VSLHNNDSPYSMSKIFGEFYSVYY 195
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.98 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.97 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.97 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.97 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.97 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.97 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.97 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.97 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.96 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.96 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.96 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.96 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.96 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.95 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.95 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.95 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.94 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.94 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.94 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.92 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.92 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.92 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.91 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.91 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.91 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.9 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.9 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.9 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.9 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.9 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.89 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.89 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.89 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.87 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.87 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.87 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.87 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.86 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.86 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.86 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.85 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.85 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.85 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.84 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.84 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.84 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.84 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.84 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.84 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.84 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.84 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.83 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.83 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.83 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.83 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.83 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.83 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.83 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.83 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.83 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.83 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.83 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.83 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.82 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.82 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.82 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.82 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.82 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.82 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.82 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.82 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.82 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.82 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.82 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.82 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.82 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.82 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.82 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.82 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.81 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.81 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.81 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.81 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.81 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.81 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.81 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.81 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.81 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.81 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.81 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.81 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.81 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.81 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.81 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.81 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.81 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.81 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.81 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.81 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.81 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.81 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.8 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.8 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.8 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.8 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.8 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.8 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.8 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.8 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.8 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.8 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.8 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.8 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.8 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.8 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.8 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.8 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.8 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.8 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.8 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.8 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.8 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.8 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.8 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.8 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.8 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.79 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.79 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.79 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.79 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.79 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.79 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.79 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.79 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.79 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.79 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.79 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.79 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.79 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.79 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.79 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.79 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.79 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.79 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.79 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.78 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.78 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.78 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.78 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.78 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.78 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.78 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.78 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.78 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.78 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.78 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.78 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.78 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.78 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.78 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.78 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.78 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.78 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.78 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.78 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.77 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.77 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.77 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.77 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.77 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.77 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.77 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.77 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.77 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.77 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.77 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.77 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.77 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.77 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.77 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.76 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.76 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.76 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.76 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.76 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.76 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.76 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.76 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.76 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.75 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.75 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.75 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.75 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.75 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.75 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.75 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.74 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.74 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.74 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.74 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.74 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.74 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.74 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.74 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.74 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.74 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.73 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.73 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.73 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.73 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.72 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.72 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.71 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.7 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.7 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.69 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.69 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.67 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.67 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.67 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.66 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.66 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.66 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.66 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.65 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.65 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.64 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.64 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.64 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.63 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.63 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.63 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.62 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.61 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.6 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.59 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.59 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.54 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.53 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.5 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.46 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.45 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.45 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.41 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.28 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.28 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.24 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.24 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.17 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.1 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.1 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.97 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.97 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.91 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.88 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.82 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.81 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.8 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.69 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.46 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.44 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.44 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.41 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.41 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.31 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.3 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.28 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.27 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.22 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.18 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.05 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.04 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.01 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.97 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.77 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.72 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.71 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.69 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.66 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.65 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.65 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.64 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.62 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.61 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.56 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.51 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.51 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.5 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 97.47 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.45 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.42 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.39 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.38 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.37 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.37 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.34 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.33 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.32 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 97.28 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.27 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.23 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.23 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.21 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.19 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 97.19 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.16 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.12 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.11 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.11 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.11 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.08 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.08 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.07 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.07 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.03 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.02 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.01 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.0 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.99 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 96.99 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.98 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 96.95 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.93 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.92 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.91 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.89 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.85 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 96.84 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.83 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.76 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 96.75 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.74 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.74 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.73 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 96.73 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.72 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.7 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.69 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.67 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.66 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.64 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.63 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.63 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.59 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.59 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.49 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.49 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 96.49 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.47 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 96.43 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 96.42 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.4 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 96.39 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.36 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.36 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.32 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.3 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.29 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.28 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.26 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.26 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.26 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.24 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.2 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 96.18 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.17 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.15 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.14 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.14 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 96.09 | |
| 4dim_A | 403 | Phosphoribosylglycinamide synthetase; structural g | 96.09 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.08 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 96.07 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 96.06 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.0 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.99 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.98 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.98 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.97 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 95.96 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.95 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.94 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.93 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 95.9 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.89 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.88 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 95.86 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 95.86 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 95.8 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 95.79 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.79 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.78 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.78 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.77 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 95.77 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 95.77 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.76 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.75 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 95.74 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 95.74 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.74 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.73 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.71 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.7 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.68 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.68 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.67 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.66 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 95.65 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 95.64 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 95.63 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 95.59 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.58 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.56 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.55 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.55 | |
| 3ouz_A | 446 | Biotin carboxylase; structural genomics, center fo | 95.54 | |
| 2w70_A | 449 | Biotin carboxylase; ligase, ATP-binding, fatty aci | 95.51 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 95.5 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.5 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 95.49 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 95.49 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.47 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 95.46 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.41 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.39 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 95.38 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.34 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.34 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.28 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.27 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.24 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.2 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.19 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 95.19 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 95.19 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.19 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 95.18 |
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=299.71 Aligned_cols=273 Identities=19% Similarity=0.219 Sum_probs=222.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~ 89 (302)
|+|+|||||||||||+++++.|+++|++|+++ .+|++|.+.+.+++++.++|+|||+|+.. ....+..++...+
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~~---~~~~~~~~~~~~~ 80 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAYT---KVDQAEKERDLAY 80 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCCC---CHHHHTTCHHHHH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCccc---ChHHHhcCHHHHH
Confidence 44699999999999999999999999999994 57999999999999977899999999987 3555557889999
Q ss_pred HHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc-CceEEee
Q 022112 90 RTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-NVCTLRV 168 (302)
Q Consensus 90 ~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~-~~~~lR~ 168 (302)
++|+.++.+++++|++.++++|++||.++|+... +.+++|++++.|. +.|+.+|..+|++++.+. +.+++||
T Consensus 81 ~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~~ilR~ 153 (287)
T 3sc6_A 81 VINAIGARNVAVASQLVGAKLVYISTDYVFQGDR------PEGYDEFHNPAPI-NIYGASKYAGEQFVKELHNKYFIVRT 153 (287)
T ss_dssp HHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCC------SSCBCTTSCCCCC-SHHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCC------CCCCCCCCCCCCC-CHHHHHHHHHHHHHHHhCCCcEEEee
Confidence 9999999999999999999999999999998765 5678999888766 899999999999998874 4589999
Q ss_pred ecccCCCCCC-chhhHHHHhcccccc---cccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCC
Q 022112 169 RMPISSDLSN-PRNFITKITRYEKVV---NIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDP 244 (302)
Q Consensus 169 ~~v~g~~~~~-~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~ 244 (302)
+++||+.... ...++..+..+.... +..++|+|++|+|++++.+++++.+++||+++++.+|+.|+++.+++.+|.
T Consensus 154 ~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~ 233 (287)
T 3sc6_A 154 SWLYGKYGNNFVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKLIHTSLYGTYHVSNTGSCSWFEFAKKIFSYANM 233 (287)
T ss_dssp CSEECSSSCCHHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHHHTSCCCEEEECCCBSCEEHHHHHHHHHHHHTC
T ss_pred eeecCCCCCcHHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHHHhCCCCCeEEEcCCCcccHHHHHHHHHHHcCC
Confidence 9999985322 123444444444422 356799999999999999999877889999999999999999999999998
Q ss_pred CCccccccccccceeeecCC-CCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 245 NFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+..+...+.... .....+ .+..+|++|++ .+| +.++|+++| ++++++++++
T Consensus 234 ~~~~~~~~~~~~--~~~~~~~~~~~~d~~k~~-~lg~~p~~~~~~~l-~~~~~~~~~~ 287 (287)
T 3sc6_A 234 KVNVLPVSTEEF--GAAAARPKYSIFQHNMLR-LNGFLQMPSWEEGL-ERFFIETKSH 287 (287)
T ss_dssp CCEEEEECHHHH--CCSSCCCSBCCBCCHHHH-HTTCCCCCBHHHHH-HHHHHHTC--
T ss_pred Ccceeeeehhhc--CcccCCCCcccccHHHHH-hhCCCCCccHHHHH-HHHHHHHhcC
Confidence 866543332211 111122 34679999999 788 668999999 9999988753
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=286.10 Aligned_cols=276 Identities=20% Similarity=0.184 Sum_probs=218.7
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHH
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKV 86 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~ 86 (302)
.....|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++..++|+|||+|+.. ....+..++.
T Consensus 8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~---~~~~~~~~~~ 84 (292)
T 1vl0_A 8 HHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT---AVDKCEEQYD 84 (292)
T ss_dssp ----CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC---CHHHHHHCHH
T ss_pred cccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCccC---CHHHHhcCHH
Confidence 33445799999999999999999999999999986 47999999999999877899999999976 3444557888
Q ss_pred HHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc-CceE
Q 022112 87 ETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-NVCT 165 (302)
Q Consensus 87 ~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~-~~~~ 165 (302)
..+++|+.++.+++++|++.++++|++||.++|+... ..+++|++++.+. +.|+.+|..+|.+++.+. +.++
T Consensus 85 ~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~------~~~~~E~~~~~~~-~~Y~~sK~~~E~~~~~~~~~~~~ 157 (292)
T 1vl0_A 85 LAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEA------KEPITEFDEVNPQ-SAYGKTKLEGENFVKALNPKYYI 157 (292)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCC------SSCBCTTSCCCCC-SHHHHHHHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCC------CCCCCCCCCCCCc-cHHHHHHHHHHHHHHhhCCCeEE
Confidence 9999999999999999999888999999999998764 4577888877665 899999999999998764 5589
Q ss_pred EeeecccCCCCCCchhhHHHHhcccccc---cccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhc
Q 022112 166 LRVRMPISSDLSNPRNFITKITRYEKVV---NIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 166 lR~~~v~g~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
+||+.+||+.......++..+..+.... +..++|+|++|+|++++.+++++.+++||+++++.+|+.|+++.+.+.+
T Consensus 158 lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~ 237 (292)
T 1vl0_A 158 VRTAWLYGDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLT 237 (292)
T ss_dssp EEECSEESSSSCHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHTCCEEEECCCBSCEEHHHHHHHHHHHH
T ss_pred EeeeeeeCCCcChHHHHHHHHhcCCcEEeecCeeeCCccHHHHHHHHHHHHhcCCCcEEEecCCCCccHHHHHHHHHHHh
Confidence 9999999982211123444444444321 2457899999999999999987766799999999999999999999999
Q ss_pred CCCCccccccccccceeeecCC-CCCccCchhHHHhCC-CcchHHHHHHHHHhhchhh
Q 022112 243 DPNFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFP-ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 243 g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~~ 298 (302)
|.+..+...+..... ....+ ....+|++|+++.|| .+++|+++| +++++++++
T Consensus 238 g~~~~~~~~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l-~~~~~~~~~ 292 (292)
T 1vl0_A 238 GIDVKVTPCTTEEFP--RPAKRPKYSVLRNYMLELTTGDITREWKESL-KEYIDLLQM 292 (292)
T ss_dssp CCCCEEEEECSTTSC--CSSCCCSBCCBCCHHHHHTTCCCCCBHHHHH-HHHHHHHTC
T ss_pred CCCCceeeccccccC--cccCCCccccccHHHHHHHcCCCCCCHHHHH-HHHHHHhcC
Confidence 987543322221111 11111 245799999999999 556999999 999988864
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=292.79 Aligned_cols=274 Identities=16% Similarity=0.171 Sum_probs=219.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------ecCCCChhhHHHHHhhcCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------SGRLENRASLEADIAAVKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------~~dl~~~~~~~~~~~~~~~ 63 (302)
++|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++ ++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 101 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV 101 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence 35799999999999999999999999998773 468999999999998 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+|||+|+.. .......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..++.|+++..|.
T Consensus 102 d~Vih~A~~~---~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~p~ 172 (351)
T 3ruf_A 102 DHVLHQAALG---SVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHP------ALPKVEENIGNPL 172 (351)
T ss_dssp SEEEECCCCC---CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC------CSSBCTTCCCCCC
T ss_pred CEEEECCccC---CcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCC------CCCCccCCCCCCC
Confidence 9999999976 35566778889999999999999999999987 599999999999765 5678888887766
Q ss_pred CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc-------hhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 143 GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP-------RNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
+.|+.+|..+|++++.+. ..+++||+++||+..... ..++..+..+..+. ...++|+|++|+
T Consensus 173 -~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dv 251 (351)
T 3ruf_A 173 -SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNV 251 (351)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHH
Confidence 899999999999987653 348999999999865322 34566666665532 246789999999
Q ss_pred HHHHHHHHhc---CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--C
Q 022112 206 LPISIEMAKR---NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--E 280 (302)
Q Consensus 206 a~~~~~~~~~---~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~ 280 (302)
|++++.++.. ..+++||+++++.+|+.|+++.+.+.+|.+........... ...........+|++|+++.|| +
T Consensus 252 a~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k~~~~lG~~p 330 (351)
T 3ruf_A 252 IQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYR-EFRSGDVRHSQADVTKAIDLLKYRP 330 (351)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEE-CCCTTCCSBCCBCCHHHHHHHCCCC
T ss_pred HHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCccccccccccccc-CCCCCccceeeeCHHHHHHHhCCCC
Confidence 9999999876 24579999999999999999999999998433221111100 0011111356899999999999 3
Q ss_pred cchHHHHHHHHHhhchhhhc
Q 022112 281 LLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 281 ~~~~~e~i~~~~~~~~~~~~ 300 (302)
..+++++| ++++++++++.
T Consensus 331 ~~~~~~~l-~~~~~~~~~~~ 349 (351)
T 3ruf_A 331 NIKIREGL-RLSMPWYVRFL 349 (351)
T ss_dssp CCCHHHHH-HHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHhh
Confidence 34999999 99999998764
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=289.75 Aligned_cols=266 Identities=14% Similarity=0.149 Sum_probs=215.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---------------ecCCCChhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---------------SGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|+|+|||||||||||++|+++|+++|++|+++ .+|++ .+++.++++ ++|+|||+|+...
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~~~--- 74 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYT-LEDLINQLN--DVDAVVHLAATRG--- 74 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCC-HHHHHHHTT--TCSEEEECCCCCC---
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEcccc-HHHHHHhhc--CCCEEEEccccCC---
Confidence 56899999999999999999999999998874 57888 888999998 9999999999873
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
.. ++...+++|+.++.+++++|++.+++ +|++||.++|+... ..++.|++++.|. +.|+.+|..+|++
T Consensus 75 ~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~~ 143 (311)
T 3m2p_A 75 SQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDET------SLPWNEKELPLPD-LMYGVSKLACEHI 143 (311)
T ss_dssp SS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGG------GCSBCTTSCCCCS-SHHHHHHHHHHHH
T ss_pred CC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCC------CCCCCCCCCCCCC-chhHHHHHHHHHH
Confidence 21 66678899999999999999999886 99999999999765 5677888887766 8999999999999
Q ss_pred HHhhcC-----ceEEeeecccCCCCCC---chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcC-CCCeEE
Q 022112 157 LKNFEN-----VCTLRVRMPISSDLSN---PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRN-LTGIWN 222 (302)
Q Consensus 157 ~~~~~~-----~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~ 222 (302)
++.+.. .+++||+++||+.... ...++..+..+.... ...++|+|++|+|++++.+++++ .+++||
T Consensus 144 ~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~ 223 (311)
T 3m2p_A 144 GNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSGTFN 223 (311)
T ss_dssp HHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCCCCeEE
Confidence 987643 4899999999986532 234556666665532 24668999999999999999986 567999
Q ss_pred ecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-Ccc-hHHHHHHHHHhhchhhhc
Q 022112 223 FTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELL-SIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 223 ~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~-~~~e~i~~~~~~~~~~~~ 300 (302)
+++++.+|+.|+++.+.+.+|.+......+.. .........+|++|+++.|| .+. +++++| +++++++++..
T Consensus 224 i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l-~~~~~~~~~~~ 297 (311)
T 3m2p_A 224 IGSGDALTNYEVANTINNAFGNKDNLLVKNPN-----ANEGIHSSYMDSSKAKELLDFSTDYNFATAV-EEIHLLMRGLD 297 (311)
T ss_dssp ECCSCEECHHHHHHHHHHHTTCTTCEEECSSS-----BCCSCCCBCBCCHHHHHHSCCCCSCCHHHHH-HHHHHHHCC--
T ss_pred eCCCCcccHHHHHHHHHHHhCCCCcceecCCC-----CCCCcCceecCHHHHHHHhCCCcccCHHHHH-HHHHHHHHhcc
Confidence 99999999999999999999987654322110 11122356899999999999 444 999999 99999998765
Q ss_pred C
Q 022112 301 G 301 (302)
Q Consensus 301 ~ 301 (302)
+
T Consensus 298 ~ 298 (311)
T 3m2p_A 298 D 298 (311)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=289.73 Aligned_cols=274 Identities=18% Similarity=0.164 Sum_probs=216.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC----cEEE---eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI----DFTY---GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~----~V~~---~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
+||+|||||||||||++|+++|+++|+ .... +.+|++|.+.+.++++..++|+|||+|+... .......++
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~ 82 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVG--GLFRNIKYN 82 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCCCC--CHHHHTTCH
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCceecccCCHHHHHHHHhhcCCCEEEECceecc--cccccccCH
Confidence 578999999999999999999999986 2222 5799999999999999777999999999762 233456788
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCC----CCCCCCCchhhhHHHHHHHHHhh
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEED----TPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~----~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
...+++|+.++.+++++|++.+++ +|++||.++|+... ..+++|++ ++.|...+|+.+|..+|++++.+
T Consensus 83 ~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~ 156 (319)
T 4b8w_A 83 LDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKT------TYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAY 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSC------CSSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCC------CCCccccccccCCCCCCcchHHHHHHHHHHHHHHH
Confidence 899999999999999999999985 99999999999765 55678876 55554236999999999998765
Q ss_pred c-----CceEEeeecccCCCCCCc-------hhhHHH----Hhcccccc-----cccCCcccHhhHHHHHHHHHhcC---
Q 022112 161 E-----NVCTLRVRMPISSDLSNP-------RNFITK----ITRYEKVV-----NIPNSMTILDELLPISIEMAKRN--- 216 (302)
Q Consensus 161 ~-----~~~~lR~~~v~g~~~~~~-------~~~~~~----~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~--- 216 (302)
. +.+++||+++||+..... ..|+.. +..+..+. ...++|+|++|+|++++.+++++
T Consensus 157 ~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~ 236 (319)
T 4b8w_A 157 FQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEV 236 (319)
T ss_dssp HHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCCS
T ss_pred HHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccccC
Confidence 3 238999999999865321 234555 45555432 24678999999999999999873
Q ss_pred CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhh
Q 022112 217 LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFE 294 (302)
Q Consensus 217 ~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~ 294 (302)
.+++||+++++.+|+.|+++.+.+.+|.+..+...+.. ........+|++|+++.|| +..+++++| +++++
T Consensus 237 ~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~~~~~~~~d~~k~~~~lg~~p~~~~~~~l-~~~~~ 309 (319)
T 4b8w_A 237 EPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK------SDGQFKKTASNSKLRTYLPDFRFTPFKQAV-KETCA 309 (319)
T ss_dssp SCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS------CCCCSCCCBCCHHHHHHCTTCCCCCHHHHH-HHHHH
T ss_pred CceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC------CcCcccccCCHHHHHHhcCCCCCCCHHHHH-HHHHH
Confidence 24599999999999999999999999987653221110 1111235799999999999 456999999 99999
Q ss_pred chhhhcC
Q 022112 295 PNKKTTG 301 (302)
Q Consensus 295 ~~~~~~~ 301 (302)
+++++.+
T Consensus 310 ~~~~~~~ 316 (319)
T 4b8w_A 310 WFTDNYE 316 (319)
T ss_dssp HHHHSCS
T ss_pred HHHHHHh
Confidence 9988754
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=292.61 Aligned_cols=273 Identities=17% Similarity=0.169 Sum_probs=213.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC--CcEEE------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++|+|||||||||||++|+++|+++| ++|++ +.+|++|.+.+.++++..++|+|
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V 102 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI 102 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence 35799999999999999999999999 45544 47899999999999996679999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
||+|+.. ....+..++...+++|+.++.+++++|++.+++ +|++||.++|+.... ..+++|+++..|. +.
T Consensus 103 ih~A~~~---~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~-----~~~~~E~~~~~p~-~~ 173 (346)
T 4egb_A 103 VNFAAES---HVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGK-----TGRFTEETPLAPN-SP 173 (346)
T ss_dssp EECCCCC------------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCS-----SCCBCTTSCCCCC-SH
T ss_pred EECCccc---chhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCc-----CCCcCCCCCCCCC-Ch
Confidence 9999987 344455678889999999999999999999886 999999999997631 5678888888765 89
Q ss_pred hhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 146 YSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
|+.+|..+|++++.+. ..+++||+++||+..... ..++..+..+..+. ...++|+|++|+|++++.+
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999987753 348999999999865322 34566666665432 2467899999999999999
Q ss_pred HhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 213 AKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
++++. +++||+++++.+|+.|+++.+.+.+|.+.....+... .........+|++|+++.|| +..+++|+|
T Consensus 254 ~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l- 327 (346)
T 4egb_A 254 LHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTD-----RLGHDRRYAINAEKMKNEFDWEPKYTFEQGL- 327 (346)
T ss_dssp HHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC-------CCCSCCCBCCHHHHHHHCCCCCCCHHHHH-
T ss_pred HhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCC-----CCCCcceeeccHHHHHHHcCCCCCCCHHHHH-
Confidence 98764 4599999999999999999999999987653222111 11111245799999999999 344999999
Q ss_pred HHHhhchhhhc
Q 022112 290 KYVFEPNKKTT 300 (302)
Q Consensus 290 ~~~~~~~~~~~ 300 (302)
++++++++++.
T Consensus 328 ~~~~~~~~~~~ 338 (346)
T 4egb_A 328 QETVQWYEKNE 338 (346)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHhhh
Confidence 99999988764
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=287.53 Aligned_cols=271 Identities=15% Similarity=0.148 Sum_probs=216.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
++|+|||||||||||++|+++|+++|++|++ +.+|++|.+++.++++..++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 4679999999999999999999999999887 357899999999999888899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
|+|+.. .......++...++.|+.++.+++++|++.++ ++|++||.++|+... ..++.|+.+..+. +.|
T Consensus 84 h~A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~------~~~~~e~~~~~~~-~~Y 153 (341)
T 3enk_A 84 HFAALK---AVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPE------RSPIDETFPLSAT-NPY 153 (341)
T ss_dssp ECCCCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCS------SSSBCTTSCCBCS-SHH
T ss_pred ECcccc---ccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCC------CCCCCCCCCCCCC-Chh
Confidence 999987 34455667788999999999999999999887 599999999998765 5567888777655 899
Q ss_pred hhhHHHHHHHHHhhc------CceEEeeecccCCCCCC---------chhh---HHHHhccc-c-c-----------ccc
Q 022112 147 SKTKAMVEELLKNFE------NVCTLRVRMPISSDLSN---------PRNF---ITKITRYE-K-V-----------VNI 195 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~------~~~~lR~~~v~g~~~~~---------~~~~---~~~~~~~~-~-~-----------~~~ 195 (302)
+.+|..+|.+++.+. ..+++||+++||+...+ ...+ +.....+. . + ...
T Consensus 154 ~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~ 233 (341)
T 3enk_A 154 GQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTG 233 (341)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSC
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCe
Confidence 999999999987652 33899999999985311 1222 33333332 1 1 124
Q ss_pred cCCcccHhhHHHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCc
Q 022112 196 PNSMTILDELLPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDA 271 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 271 (302)
.++|+|++|+|++++.++++ ..+++||+++++.+|+.|+++.+.+.+|.+.++...+. .........+|+
T Consensus 234 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~ 307 (341)
T 3enk_A 234 VRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR------RPGDVAECYANP 307 (341)
T ss_dssp EECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC------CTTCCSEECBCC
T ss_pred eEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC------CCCCccccccCH
Confidence 56899999999999998876 45679999999999999999999999998865432211 111112457899
Q ss_pred hhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 272 SKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 272 ~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+|+++.|| +..+++|+| +++++|++++.
T Consensus 308 ~k~~~~lG~~p~~~l~~~l-~~~~~~~~~~~ 337 (341)
T 3enk_A 308 AAAAETIGWKAERDLERMC-ADHWRWQENNP 337 (341)
T ss_dssp HHHHHHHCCCCCCCHHHHH-HHHHHHHHHST
T ss_pred HHHHHHcCCCCCCCHHHHH-HHHHHHHHhcC
Confidence 99999999 446999999 99999998875
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=287.33 Aligned_cols=271 Identities=17% Similarity=0.186 Sum_probs=212.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|||||||||||||++|+++|+++|++|++ +.+|+.|.+ +.+.++ . |+|||+|+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~--~-d~vih~A~~~--- 73 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYS-WGAGIK--G-DVVFHFAANP--- 73 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTT-TTTTCC--C-SEEEECCSSC---
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHH-HHhhcC--C-CEEEECCCCC---
Confidence 68999999999999999999999999987 456787777 666666 4 9999999976
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
.......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++|+.+..|. +.|+.+|..+|.
T Consensus 74 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~------~~~~~e~~~~~p~-~~Y~~sK~~~e~ 146 (312)
T 3ko8_A 74 EVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDAD------VIPTPEEEPYKPI-SVYGAAKAAGEV 146 (312)
T ss_dssp SSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCS------SSSBCTTSCCCCC-SHHHHHHHHHHH
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCC------CCCCCCCCCCCCC-ChHHHHHHHHHH
Confidence 35566778899999999999999999999987 599999999999765 5677888777655 899999999999
Q ss_pred HHHhhc-----CceEEeeecccCCCCCC--chhhHHHHhcccccc------cccCCcccHhhHHHHHHHHHhc-----CC
Q 022112 156 LLKNFE-----NVCTLRVRMPISSDLSN--PRNFITKITRYEKVV------NIPNSMTILDELLPISIEMAKR-----NL 217 (302)
Q Consensus 156 ~~~~~~-----~~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~-----~~ 217 (302)
+++.+. +.+++||+++||+.... ...++..+..+.... ...++|+|++|+|++++.++++ ..
T Consensus 147 ~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 226 (312)
T 3ko8_A 147 MCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAP 226 (312)
T ss_dssp HHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCC
Confidence 987764 24899999999986532 124566666553321 2467899999999999999987 23
Q ss_pred CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhc
Q 022112 218 TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEP 295 (302)
Q Consensus 218 ~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~ 295 (302)
+++||+++++.+|+.|+++.+.+.+|.+......+................+|++|+++.|| +..+++|+| ++++++
T Consensus 227 ~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l-~~~~~~ 305 (312)
T 3ko8_A 227 FLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAV-KKTAED 305 (312)
T ss_dssp EEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHH-HHHHHH
T ss_pred CcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHH-HHHHHH
Confidence 56999999999999999999999999876543222111111112222345799999999999 345999999 999999
Q ss_pred hhhhc
Q 022112 296 NKKTT 300 (302)
Q Consensus 296 ~~~~~ 300 (302)
++++.
T Consensus 306 ~~~~~ 310 (312)
T 3ko8_A 306 LAKEL 310 (312)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87753
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=285.08 Aligned_cols=286 Identities=13% Similarity=0.072 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHH
Q 022112 1 MGFPANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEA 56 (302)
Q Consensus 1 ~~~~~~~~~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~ 56 (302)
|-+........+++|+|||||||||||++|+++|+++|++|++ +.+|++|.+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 80 (335)
T 1rpn_A 1 MRGSHHHHHHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQR 80 (335)
T ss_dssp --------------CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHH
T ss_pred CCCccccccccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHH
Confidence 4445556677778899999999999999999999999999876 2468888999999
Q ss_pred HHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 57 DIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 57 ~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+++..++|+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++
T Consensus 81 ~~~~~~~d~Vih~A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~------~~~~~ 151 (335)
T 1rpn_A 81 AVIKAQPQEVYNLAAQS---FVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ------AERQD 151 (335)
T ss_dssp HHHHHCCSEEEECCSCC---CHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS------SSSBC
T ss_pred HHHHcCCCEEEECcccc---chhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC------CCCCC
Confidence 99876799999999976 34444567889999999999999999999874 699999999999764 45678
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc------hhhHHHHhccccc--c----cccC
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP------RNFITKITRYEKV--V----NIPN 197 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~--~----~~~~ 197 (302)
|+++..|. +.|+.+|..+|.+++.+. ..+++|++.+||+..... ..++..+..+... . ...+
T Consensus 152 E~~~~~p~-~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~ 230 (335)
T 1rpn_A 152 ENTPFYPR-SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKR 230 (335)
T ss_dssp TTSCCCCC-SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEE
T ss_pred cccCCCCC-ChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCccee
Confidence 88877665 899999999999987653 348899999999864221 1234444555432 1 2456
Q ss_pred CcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcc-ccccccccceeeecCCCCCccCchhHHH
Q 022112 198 SMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW-KNFTLEEQAKVIVAPRSNNELDASKLKT 276 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 276 (302)
+|+|++|+|++++.+++++..++||+++++.+|+.|+++.+.+.+|.+... ..+... ...........+|++|+++
T Consensus 231 ~~i~v~Dva~a~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~d~~k~~~ 307 (335)
T 1rpn_A 231 DWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPA---FFRPAEVDVLLGNPAKAQR 307 (335)
T ss_dssp ECEEHHHHHHHHHHHHHSSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGG---GCCSSCCCBCCBCTHHHHH
T ss_pred ceEEHHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHHHHHhCCCcccccccccc---ccCCCcchhhcCCHHHHHH
Confidence 899999999999999988777899999999999999999999999986421 111100 0011111345789999999
Q ss_pred hCC-Cc-chHHHHHHHHHhhchhhhc
Q 022112 277 EFP-EL-LSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 277 ~lg-~~-~~~~e~i~~~~~~~~~~~~ 300 (302)
+|| .+ .+++|+| ++++++++++.
T Consensus 308 ~lG~~p~~~l~e~l-~~~~~~~~~~~ 332 (335)
T 1rpn_A 308 VLGWKPRTSLDELI-RMMVEADLRRV 332 (335)
T ss_dssp HHCCCCCSCHHHHH-HHHHHHHHHHH
T ss_pred hcCCCcCCCHHHHH-HHHHHHHHHhh
Confidence 999 33 4899999 88888887654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=283.36 Aligned_cols=272 Identities=18% Similarity=0.230 Sum_probs=216.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVE 87 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~ 87 (302)
|||||||||||||++|+++|+ +|++|+++ .+|++|.+++.++++..++|+|||+|+.. ....+..++..
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~---~~~~~~~~~~~ 76 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHT---AVDKAESEPEL 76 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCCC---CHHHHTTCHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEECcccC---CHhhhhcCHHH
Confidence 689999999999999999999 89999984 47999999999999866799999999976 34345668889
Q ss_pred HHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc-CceEE
Q 022112 88 TIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-NVCTL 166 (302)
Q Consensus 88 ~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~-~~~~l 166 (302)
.+++|+.++.+++++|++.++++|++||.++|+... ..+++|+++..|. +.|+.+|..+|++++.+. +.+++
T Consensus 77 ~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~~il 149 (299)
T 1n2s_A 77 AQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTG------DIPWQETDATSPL-NVYGKTKLAGEKALQDNCPKHLIF 149 (299)
T ss_dssp HHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCT------TCCBCTTSCCCCS-SHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCC------CCCCCCCCCCCCc-cHHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999999988999999999999764 4577888877665 899999999999998764 56999
Q ss_pred eeecccCCCCCC-chhhHHHHhcccccc---cccCCcccHhhHHHHHHHHHhcC-----CCCeEEecCCCccCHHHHHHH
Q 022112 167 RVRMPISSDLSN-PRNFITKITRYEKVV---NIPNSMTILDELLPISIEMAKRN-----LTGIWNFTNPGVVSHNEILEM 237 (302)
Q Consensus 167 R~~~v~g~~~~~-~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~~~~~~~~~~-----~~~~~~~~~~~~~s~~e~~~~ 237 (302)
||+++||+.... ...++..+..+.... +..++|+|++|+|++++.+++++ .+++||+++++.+|+.|+++.
T Consensus 150 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~ 229 (299)
T 1n2s_A 150 RTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAAL 229 (299)
T ss_dssp EECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHH
T ss_pred eeeeecCCCcCcHHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeCCCCCCHHHHHHH
Confidence 999999985421 123444455554422 35678999999999999999764 267999999999999999999
Q ss_pred HHhhcCCCC------ccccccccccceeeecCC-CCCccCchhHHHhCC-CcchHHHHHHHHHhhchhhhc
Q 022112 238 YRQYIDPNF------TWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFP-ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 238 ~~~~~g~~~------~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+.+.+|.+. .......... .....+ ....+|++|++++|| .+.+|+|+| ++++++++++.
T Consensus 230 i~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~l-~~~~~~~~~~~ 297 (299)
T 1n2s_A 230 VFDEARKAGITLALTELNAVPTSAY--PTPASRPGNSRLNTEKFQRNFDLILPQWELGV-KRMLTEMFTTT 297 (299)
T ss_dssp HHHHHHHHTCCCCCCEEEEECSTTS--CCSSCCCSBCCBCCHHHHHHHTCCCCBHHHHH-HHHHHHHHSCC
T ss_pred HHHHhCCCccccccccccccccccc--cCcCCCCCceeeeHHHHHHhcCCCCCCHHHHH-HHHHHHHHhcC
Confidence 999998652 1111111000 011111 346899999999999 556899999 99999988765
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=286.96 Aligned_cols=266 Identities=14% Similarity=0.162 Sum_probs=215.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh--CCCcEEEe-------------------------------ecCCCChhhHHHH-H
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA--QSIDFTYG-------------------------------SGRLENRASLEAD-I 58 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~--~g~~V~~~-------------------------------~~dl~~~~~~~~~-~ 58 (302)
++|+|||||||||||++|++.|++ .|++|+++ .+|++|.+++.++ .
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 88 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLEK 88 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhhc
Confidence 457999999999999999999999 89998873 4688899888887 4
Q ss_pred hhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 59 AAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 59 ~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
. ++|+|||+|+.. ..+..++...+++|+.++.+++++|++.++++|++||.++|+... .+++|+++
T Consensus 89 ~--~~D~vih~A~~~-----~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~-------~~~~E~~~ 154 (362)
T 3sxp_A 89 L--HFDYLFHQAAVS-----DTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTK-------APNVVGKN 154 (362)
T ss_dssp S--CCSEEEECCCCC-----GGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCC-------SSBCTTSC
T ss_pred c--CCCEEEECCccC-----CccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCC-------CCCCCCCC
Confidence 4 899999999965 235578889999999999999999999999999999999999763 37788888
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC---ceEEeeecccCCCCCCc-------hhhHHHHhcccccc-----cccCCcccHh
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN---VCTLRVRMPISSDLSNP-------RNFITKITRYEKVV-----NIPNSMTILD 203 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~---~~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~i~v~ 203 (302)
..|. +.|+.+|..+|.+++.+.. .+++||+++||++.... ..++..+..+.... ...++|+|++
T Consensus 155 ~~p~-~~Y~~sK~~~E~~~~~~~~~~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 233 (362)
T 3sxp_A 155 ESPE-NVYGFSKLCMDEFVLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIE 233 (362)
T ss_dssp CCCS-SHHHHHHHHHHHHHHHTTTTSCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHH
T ss_pred CCCC-ChhHHHHHHHHHHHHHHhccCCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHH
Confidence 7766 8999999999999988754 48999999999875321 23555666665432 2467899999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--Cc
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--EL 281 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~ 281 (302)
|+|++++.+++++..|+||+++++.+|+.|+++.+.+.+| +..+...+.. .........+|++|+++.|| +.
T Consensus 234 Dva~ai~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~ 307 (362)
T 3sxp_A 234 DVIQANVKAMKAQKSGVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNP-----YAFFQKHTQAHIEPTILDLDYTPL 307 (362)
T ss_dssp HHHHHHHHHTTCSSCEEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC------------CCCCBCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCC-----CcCcccceecCHHHHHHHhCCCCC
Confidence 9999999999987777999999999999999999999999 6543222111 01111346899999999999 34
Q ss_pred chHHHHHHHHHhhchhhhc
Q 022112 282 LSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 282 ~~~~e~i~~~~~~~~~~~~ 300 (302)
.+|+++| ++++++++++.
T Consensus 308 ~~l~e~l-~~~~~~~~~~~ 325 (362)
T 3sxp_A 308 YDLESGI-KDYLPHIHAIF 325 (362)
T ss_dssp CCHHHHH-HHHHHHHTCC-
T ss_pred CCHHHHH-HHHHHHHHHHh
Confidence 4999999 99999887653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=284.22 Aligned_cols=269 Identities=15% Similarity=0.176 Sum_probs=208.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
||+|||||||||||++|+++|+++|+.|.+ +.+|+++ +++.++++ ++|+|||+|+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~-~~~~~~~~--~~d~vih~a~~~--- 74 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLVKADLAA-DDIKDYLK--GAEEVWHIAANP--- 74 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGSCTTEEEECCCTTT-SCCHHHHT--TCSEEEECCCCC---
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhcCCCcEEEECcCCh-HHHHHHhc--CCCEEEECCCCC---
Confidence 578999999999999999999999955544 5688988 88888988 899999999976
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
.......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..++.|+.+..+. +.|+.+|..+|.
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~------~~~~~E~~~~~~~-~~Y~~sK~~~e~ 147 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAK------VIPTPEDYPTHPI-SLYGASKLACEA 147 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCS------SSSBCTTSCCCCC-SHHHHHHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCC------CCCCCCCCCCCCC-CHHHHHHHHHHH
Confidence 34556678899999999999999999999887 599999999999765 5667887776655 899999999999
Q ss_pred HHHhhcC-----ceEEeeecccCCCCCCc--hhhHHHHhcccc-c--c---cccCCcccHhhHHHHHHHHHhcC-CCCeE
Q 022112 156 LLKNFEN-----VCTLRVRMPISSDLSNP--RNFITKITRYEK-V--V---NIPNSMTILDELLPISIEMAKRN-LTGIW 221 (302)
Q Consensus 156 ~~~~~~~-----~~~lR~~~v~g~~~~~~--~~~~~~~~~~~~-~--~---~~~~~~i~v~D~a~~~~~~~~~~-~~~~~ 221 (302)
+++.+.. .+++||+++||+..... ..++..+..+.. . . ...++|+|++|+|++++.+++.. .+++|
T Consensus 148 ~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~ 227 (313)
T 3ehe_A 148 LIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIF 227 (313)
T ss_dssp HHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCSSEEEE
T ss_pred HHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCCCCceE
Confidence 9877542 38999999999865321 245666665532 2 1 24678999999999999999854 45799
Q ss_pred EecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 222 NFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 222 ~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
|+++++.+|+.|+++.+.+.+|.+..+.... .............+|++|+++ || +..+++|+| ++++++++++
T Consensus 228 ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l-~~~~~~~~~~ 302 (313)
T 3ehe_A 228 NIGSEDQIKVKRIAEIVCEELGLSPRFRFTG---GDRGWKGDVPVMLLSIEKLKR-LGWKPRYNSEEAV-RMAVRDLVED 302 (313)
T ss_dssp ECCCSCCEEHHHHHHHHHHHTTCCCEEEEC---------------CCBCCHHHHH-HTCCCSCCHHHHH-HHHHHHHHHH
T ss_pred EECCCCCeeHHHHHHHHHHHhCCCCceEECC---CccCCccccceeccCHHHHHH-cCCCCCCCHHHHH-HHHHHHHHhC
Confidence 9999999999999999999999875432111 100111122346799999965 78 445999999 9999998876
Q ss_pred c
Q 022112 300 T 300 (302)
Q Consensus 300 ~ 300 (302)
.
T Consensus 303 ~ 303 (313)
T 3ehe_A 303 L 303 (313)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=290.69 Aligned_cols=276 Identities=15% Similarity=0.184 Sum_probs=216.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------eecCCC-ChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------GSGRLE-NRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------~~~dl~-~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+||+|||||||||||++|+++|+++ |++|++ +.+|++ +.+.+.++++ ++|+|||+|+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~A~ 100 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPLVA 100 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEECBC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEcCc
Confidence 4579999999999999999999998 899887 567898 8999999998 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC------CCCCc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN------FVGSF 145 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~------~~~~~ 145 (302)
.. .......++...+++|+.++.+++++|++.+.++|++||.++|+... ..++.|++.+. .+.+.
T Consensus 101 ~~---~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~------~~~~~e~~~~~~~~p~~~p~~~ 171 (372)
T 3slg_A 101 IA---TPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCA------DEQFDPDASALTYGPINKPRWI 171 (372)
T ss_dssp CC---CHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCC------CSSBCTTTCCEEECCTTCTTHH
T ss_pred cc---cHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCC------CCCCCccccccccCCCCCCCCc
Confidence 87 35455678889999999999999999999886699999999999765 45667776441 23368
Q ss_pred hhhhHHHHHHHHHhhcC----ceEEeeecccCCCCCC-----------chhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 146 YSKTKAMVEELLKNFEN----VCTLRVRMPISSDLSN-----------PRNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~----~~~lR~~~v~g~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
|+.+|..+|++++.+.. .+++||+++||+.... ...++..+..+..+. ...++|+|++|+
T Consensus 172 Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv 251 (372)
T 3slg_A 172 YACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDG 251 (372)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHH
Confidence 99999999999988743 4999999999987532 123556666665532 246689999999
Q ss_pred HHHHHHHHhcC----CCCeEEecCC-CccCHHHHHHHHHhhcCCCCcccccccccccee-----ee----cCCCCCccCc
Q 022112 206 LPISIEMAKRN----LTGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKV-----IV----APRSNNELDA 271 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~----~~~~~~~~d~ 271 (302)
|++++.+++++ .+++||++++ +.+|+.|+++.+.+.+|.+..+...+....... .. .......+|+
T Consensus 252 a~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 331 (372)
T 3slg_A 252 ISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKI 331 (372)
T ss_dssp HHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-------------CCCCBCC
T ss_pred HHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeeccccccccCCccccceeecCH
Confidence 99999999874 3579999994 899999999999999997755432221100000 00 1113457899
Q ss_pred hhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 272 SKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 272 ~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+|+++.|| +..+++++| ++++++++++.
T Consensus 332 ~k~~~~lG~~p~~~l~e~l-~~~~~~~~~~~ 361 (372)
T 3slg_A 332 ENTMQELGWAPQFTFDDAL-RQIFEAYRGHV 361 (372)
T ss_dssp HHHHHHHTCCCCCCHHHHH-HHHHHHHTTCH
T ss_pred HHHHHHcCCCCCCCHHHHH-HHHHHHHHHHH
Confidence 99999999 344999999 99999987653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=287.20 Aligned_cols=267 Identities=13% Similarity=0.128 Sum_probs=211.1
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
.++|+|||||||||||++|++.|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+... .
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~---~- 90 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMS---W- 90 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCC---S-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccC---c-
Confidence 35679999999999999999999999999988 4679999999999999 9999999999762 2
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHH
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLK 158 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~ 158 (302)
........+++|+.++.+++++|++.++ ++|++||.+||+..... ..++.|+++..+. +.|+.+|..+|++++
T Consensus 91 -~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~----~~~~~E~~~~~~~-~~Y~~sK~~~E~~~~ 164 (347)
T 4id9_A 91 -APADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPE----FLPVTEDHPLCPN-SPYGLTKLLGEELVR 164 (347)
T ss_dssp -SGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCS----SSSBCTTSCCCCC-SHHHHHHHHHHHHHH
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCC----CCCcCCCCCCCCC-ChHHHHHHHHHHHHH
Confidence 2234488999999999999999999988 59999999999973211 5678888877665 899999999999997
Q ss_pred hhc-----CceEEeeeccc-------------CCCCCC--------------chhhHHHHhcccccc-----cccCCc--
Q 022112 159 NFE-----NVCTLRVRMPI-------------SSDLSN--------------PRNFITKITRYEKVV-----NIPNSM-- 199 (302)
Q Consensus 159 ~~~-----~~~~lR~~~v~-------------g~~~~~--------------~~~~~~~~~~~~~~~-----~~~~~~-- 199 (302)
.+. +.+++||+++| |+.... ...++..+..+.+.. ...++|
T Consensus 165 ~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 244 (347)
T 4id9_A 165 FHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRM 244 (347)
T ss_dssp HHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEE
T ss_pred HHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCcc
Confidence 653 23899999999 653211 112444454554421 246688
Q ss_pred --ccHhhHHHHHHHHHhcC--CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHH
Q 022112 200 --TILDELLPISIEMAKRN--LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLK 275 (302)
Q Consensus 200 --i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 275 (302)
+|++|+|++++.+++++ .+++||+++++.+|+.|+++.+.+.+|.+......+.. .....+|++|++
T Consensus 245 ~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~---------~~~~~~d~~k~~ 315 (347)
T 4id9_A 245 HITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLPIVTVDFPGD---------GVYYHTSNERIR 315 (347)
T ss_dssp CEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCCEEEEECSSC---------CCBCCBCCHHHH
T ss_pred CcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCCCceeeCCCc---------ccccccCHHHHH
Confidence 99999999999999875 36799999999999999999999999987654322111 114579999999
Q ss_pred HhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 276 TEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 276 ~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+.|| +..+++++| ++++++++++.
T Consensus 316 ~~lG~~p~~~~~~~l-~~~~~~~~~~~ 341 (347)
T 4id9_A 316 NTLGFEAEWTMDRML-EEAATARRQRL 341 (347)
T ss_dssp HHHCCCCCCCHHHHH-HHHHHHHHHHC
T ss_pred HHhCCCCCCCHHHHH-HHHHHHHHhhh
Confidence 9999 334999999 99999987765
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=279.34 Aligned_cols=270 Identities=16% Similarity=0.157 Sum_probs=211.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
||+|||||||||||++|+++|+++|++|++ +.+|++|.+++.+++++.++|+|||+|+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~-- 78 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADS-- 78 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCccc--
Confidence 579999999999999999999999999887 346888999999988877899999999976
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++|+++..+. +.|+.+|..+|
T Consensus 79 -~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~------~~~~~E~~~~~~~-~~Y~~sK~~~e 150 (330)
T 2c20_A 79 -LVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVD------VDLITEETMTNPT-NTYGETKLAIE 150 (330)
T ss_dssp -CHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCS------SSSBCTTSCCCCS-SHHHHHHHHHH
T ss_pred -CccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCC------CCCCCcCCCCCCC-ChHHHHHHHHH
Confidence 23334567888999999999999999999887 599999999998654 5577888877655 89999999999
Q ss_pred HHHHhhc-----CceEEeeecccCCCCCC--------chhhHHHHhc----ccc-c-----------ccccCCcccHhhH
Q 022112 155 ELLKNFE-----NVCTLRVRMPISSDLSN--------PRNFITKITR----YEK-V-----------VNIPNSMTILDEL 205 (302)
Q Consensus 155 ~~~~~~~-----~~~~lR~~~v~g~~~~~--------~~~~~~~~~~----~~~-~-----------~~~~~~~i~v~D~ 205 (302)
++++.+. +.+++||+++||+...+ ...++..+.. ... + ....++|+|++|+
T Consensus 151 ~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dv 230 (330)
T 2c20_A 151 KMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDL 230 (330)
T ss_dssp HHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHH
T ss_pred HHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHH
Confidence 9987753 24899999999985211 1234433322 221 1 1235689999999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-C
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-E 280 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~ 280 (302)
|++++.+++++ .+++||+++++.+|+.|+++.+.+.+|.+.+....+. .........+|++|+++.|| .
T Consensus 231 a~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~lG~~ 304 (330)
T 2c20_A 231 VAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR------RAGDPARLVASSQKAKEKLGWD 304 (330)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC------CSSCCSEECBCCHHHHHHHCCC
T ss_pred HHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC------CCCcccccccCHHHHHHHhCCC
Confidence 99999998753 3579999999999999999999999998755322111 01111245789999999999 3
Q ss_pred c-c-hHHHHHHHHHhhchhhhc
Q 022112 281 L-L-SIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 281 ~-~-~~~e~i~~~~~~~~~~~~ 300 (302)
+ . +++++| +++++|++++.
T Consensus 305 p~~~~l~~~l-~~~~~~~~~~~ 325 (330)
T 2c20_A 305 PRYVNVKTII-EHAWNWHQKQP 325 (330)
T ss_dssp CSCCCHHHHH-HHHHHHHHHCS
T ss_pred CccCCHHHHH-HHHHHHHHHhh
Confidence 3 2 899999 99999988764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-39 Score=276.75 Aligned_cols=271 Identities=18% Similarity=0.198 Sum_probs=194.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee----------cCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS----------GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCE 82 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~----------~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~ 82 (302)
|+|+|||||||||||++|+++|+++|++|+++. +|++|.+++.++++..++|+|||+|+.. ....+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~---~~~~~~ 77 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAER---RPDVVE 77 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC------------
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCccc---Chhhhh
Confidence 457999999999999999999999999999855 7899998888888866799999999976 233345
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-c
Q 022112 83 SHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-E 161 (302)
Q Consensus 83 ~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~ 161 (302)
.++...+++|+.++.+++++|++.++++|++||.++|+.. ..+++|+++..|. +.|+.+|..+|.+++.+ .
T Consensus 78 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~~-------~~~~~E~~~~~~~-~~Y~~sK~~~e~~~~~~~~ 149 (315)
T 2ydy_A 78 NQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGT-------NPPYREEDIPAPL-NLYGKTKLDGEKAVLENNL 149 (315)
T ss_dssp ----------CHHHHHHHHHHHHHTCEEEEEEEGGGSCSS-------SCSBCTTSCCCCC-SHHHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCCC-------CCCCCCCCCCCCc-CHHHHHHHHHHHHHHHhCC
Confidence 6788899999999999999999988899999999999862 5677888777655 89999999999999876 4
Q ss_pred CceEEeeecccCCCCCC----chhhHHHHh-cccccc---cccCCcccHhhHHHHHHHHHhc-----CCCCeEEecCCCc
Q 022112 162 NVCTLRVRMPISSDLSN----PRNFITKIT-RYEKVV---NIPNSMTILDELLPISIEMAKR-----NLTGIWNFTNPGV 228 (302)
Q Consensus 162 ~~~~lR~~~v~g~~~~~----~~~~~~~~~-~~~~~~---~~~~~~i~v~D~a~~~~~~~~~-----~~~~~~~~~~~~~ 228 (302)
+.+++|++.+||+.... ...++..+. .+.... ...++++|++|+|++++.++++ ..+++||+++++.
T Consensus 150 ~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~~~ 229 (315)
T 2ydy_A 150 GAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQ 229 (315)
T ss_dssp TCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCSCC
T ss_pred CeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeeccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCCCc
Confidence 56899999999976531 123555555 444321 3567899999999999998865 3467999999999
Q ss_pred cCHHHHHHHHHhhcCCCCc-cccccccccceeeecCC-CCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 229 VSHNEILEMYRQYIDPNFT-WKNFTLEEQAKVIVAPR-SNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 229 ~s~~e~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+|+.|+++.+.+.+|.+.. +...+. .. .....+ ....+|++|++++ | +..+|+++| ++++++++++
T Consensus 230 ~s~~e~~~~i~~~~g~~~~~~~~~~~--~~-~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l-~~~~~~~~~~ 299 (315)
T 2ydy_A 230 MTKYEMACAIADAFNLPSSHLRPITD--SP-VLGAQRPRNAQLDCSKLETL-GIGQRTPFRIGI-KESLWPFLID 299 (315)
T ss_dssp BCHHHHHHHHHHHTTCCCTTEEEECS--CC-CSSSCCCSBCCBCCHHHHHT-TCCCCCCHHHHH-HHHHGGGCC-
T ss_pred ccHHHHHHHHHHHhCCChhheecccc--cc-ccccCCCcccccchHHHHhc-CCCCCCCHHHHH-HHHHHHHccc
Confidence 9999999999999998754 222211 00 001112 2567999999998 9 456899999 8888888765
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=280.27 Aligned_cols=271 Identities=12% Similarity=0.090 Sum_probs=213.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe----ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~----~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~ 89 (302)
+|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++..++|+|||+|+... .......++...+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~~~~~ 80 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVG--GIVANNTYPADFI 80 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC--CHHHHHHCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCeecC--CcchhhhCHHHHH
Confidence 4799999999999999999999999999884 479999999999998778999999999762 1223456788899
Q ss_pred HHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC----CCCCCCCchhhhHHHHHHHHHhhc---
Q 022112 90 RTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED----TPNFVGSFYSKTKAMVEELLKNFE--- 161 (302)
Q Consensus 90 ~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~----~~~~~~~~Y~~~K~~~E~~~~~~~--- 161 (302)
++|+.++.+++++|++.++ ++|++||..+|+... ..+++|++ ++.|..+.|+.+|..+|++++.+.
T Consensus 81 ~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~ 154 (321)
T 1e6u_A 81 YQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLA------KQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 154 (321)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTC------CSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCC------CCCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887 599999999999764 45667776 444433589999999999987753
Q ss_pred --CceEEeeecccCCCCCCc-------hhhHHHHhcc-----cccc-----cccCCcccHhhHHHHHHHHHhcCC-----
Q 022112 162 --NVCTLRVRMPISSDLSNP-------RNFITKITRY-----EKVV-----NIPNSMTILDELLPISIEMAKRNL----- 217 (302)
Q Consensus 162 --~~~~lR~~~v~g~~~~~~-------~~~~~~~~~~-----~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~----- 217 (302)
+.+++||+++||+..... ..++..+..+ .++. ...++|+|++|+|++++.+++++.
T Consensus 155 ~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~ 234 (321)
T 1e6u_A 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLE 234 (321)
T ss_dssp CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCccccccc
Confidence 348999999999865321 2344444432 2221 246689999999999999998753
Q ss_pred -----CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-Cc-chHHHHHHH
Q 022112 218 -----TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-EL-LSIKESLIK 290 (302)
Q Consensus 218 -----~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~-~~~~e~i~~ 290 (302)
+++||+++++.+|+.|+++.+.+.+|.+..+...+.. ........+|++|+++ || .+ .+|+++| +
T Consensus 235 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~~~~~~~~d~~k~~~-lG~~p~~~~~~~l-~ 306 (321)
T 1e6u_A 235 NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK------PDGTPRKLLDVTRLHQ-LGWYHEISLEAGL-A 306 (321)
T ss_dssp TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTS------CCCCSBCCBCCHHHHH-TTCCCCCCHHHHH-H
T ss_pred ccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCC------CCCcccccCCHHHHHh-cCCccCCcHHHHH-H
Confidence 4799999999999999999999999987653221110 1112345799999999 99 33 5999999 9
Q ss_pred HHhhchhhhc
Q 022112 291 YVFEPNKKTT 300 (302)
Q Consensus 291 ~~~~~~~~~~ 300 (302)
+++++++++.
T Consensus 307 ~~~~~~~~~~ 316 (321)
T 1e6u_A 307 STYQWFLENQ 316 (321)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=275.68 Aligned_cols=266 Identities=18% Similarity=0.217 Sum_probs=211.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+||||||+||||++++++|+++|++|++ +.+|++|.+++.+++++.++|+|||+|+..
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~--- 77 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQA--- 77 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCC---
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECcccc---
Confidence 68999999999999999999999999887 346888999999888877899999999976
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCC-ccccC-CCCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATG-CIFEY-DSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~-~vy~~-~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~ 153 (302)
.......++...+++|+.++.+++++|++.++ ++|++||. ++|+. .. ..++.|++++.+. +.|+.+|..+
T Consensus 78 ~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~------~~~~~E~~~~~~~-~~Y~~sK~~~ 150 (311)
T 2p5y_A 78 SVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPE------GERAEETWPPRPK-SPYAASKAAF 150 (311)
T ss_dssp CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCT------TCCBCTTSCCCCC-SHHHHHHHHH
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCC------CCCcCCCCCCCCC-ChHHHHHHHH
Confidence 23345567888999999999999999999887 59999998 89985 32 4567787776554 8999999999
Q ss_pred HHHHHhhc-----CceEEeeecccCCCCCCc------hhhHHHHhccccc--c--------cccCCcccHhhHHHHHHHH
Q 022112 154 EELLKNFE-----NVCTLRVRMPISSDLSNP------RNFITKITRYEKV--V--------NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 154 E~~~~~~~-----~~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~--~--------~~~~~~i~v~D~a~~~~~~ 212 (302)
|.+++.+. +.+++||+++||+..... ..++..+..+.+. . ...++|+|++|+|++++.+
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~ 230 (311)
T 2p5y_A 151 EHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALA 230 (311)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHH
Confidence 99987653 458999999999864321 2345555555442 1 1356899999999999999
Q ss_pred HhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHH
Q 022112 213 AKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIK 290 (302)
Q Consensus 213 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~ 290 (302)
++.+ +++||+++++.+|+.|+++.+.+.+|.+.+....+.. ........+|++|+++ || +..+++|+| +
T Consensus 231 ~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~~~~~~~~d~~k~~~-lg~~p~~~~~~~l-~ 301 (311)
T 2p5y_A 231 LFSL-EGIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPPR------PGDLERSVLSPLKLMA-HGWRPKVGFQEGI-R 301 (311)
T ss_dssp HHHC-CEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECCC------TTCCSBCCBCCHHHHT-TTCCCSSCHHHHH-H
T ss_pred HhCC-CCEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCCC------ccchhhccCCHHHHHH-CCCCCCCCHHHHH-H
Confidence 9875 7799999999999999999999999987553222111 1111346799999999 99 346999999 9
Q ss_pred HHhhchhhh
Q 022112 291 YVFEPNKKT 299 (302)
Q Consensus 291 ~~~~~~~~~ 299 (302)
++++|++++
T Consensus 302 ~~~~~~~~~ 310 (311)
T 2p5y_A 302 LTVDHFRGA 310 (311)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=274.66 Aligned_cols=274 Identities=17% Similarity=0.194 Sum_probs=213.3
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------ecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------SGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
..++|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++..++|+|||+|+..
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~--- 85 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKS--- 85 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCC---
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCccc---
Confidence 3456799999999999999999999999998763 57999999999999866699999999976
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCC--CCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYD--SGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~--~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
....+..++...+++|+.++.+++++|++. ++ ++|++||.++|+.. . ..+++|+++..+. +.|+.+|..
T Consensus 86 ~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~------~~~~~E~~~~~~~-~~Y~~sK~~ 158 (321)
T 2pk3_A 86 SVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPE------ESPVSEENQLRPM-SPYGVSKAS 158 (321)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGG------GCSBCTTSCCBCC-SHHHHHHHH
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCC------CCCCCCCCCCCCC-CccHHHHHH
Confidence 344455578899999999999999999876 34 69999999999864 2 4567888776554 899999999
Q ss_pred HHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhc---c--cccc-----cccCCcccHhhHHHHHHHHHh
Q 022112 153 VEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITR---Y--EKVV-----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 153 ~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~---~--~~~~-----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
+|.+++.+. +.+++||+++||+..... ..++..+.. + .... ...++|+|++|+|++++.+++
T Consensus 159 ~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~ 238 (321)
T 2pk3_A 159 VGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQ 238 (321)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHh
Confidence 999987763 348999999999865321 234555544 4 2211 235679999999999999998
Q ss_pred cC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-Ccc-hHHHHHHHH
Q 022112 215 RN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELL-SIKESLIKY 291 (302)
Q Consensus 215 ~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~-~~~e~i~~~ 291 (302)
++ .+++||+++++.+|+.|+++.+.+.+|.+..+...+.. ..........+|++|+++.|| .+. +|+|+| ++
T Consensus 239 ~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~----~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l-~~ 313 (321)
T 2pk3_A 239 YGKTGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQ----LRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSL-FE 313 (321)
T ss_dssp HCCTTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGG----CCSSCCSBCCBCCHHHHHHHCCCCCSCHHHHH-HH
T ss_pred CCCCCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeecccc----CCCcccchhccCHHHHHHHcCCCcCCCHHHHH-HH
Confidence 75 45799999999999999999999999987553322110 001111346799999999999 343 999999 99
Q ss_pred Hhhchhhh
Q 022112 292 VFEPNKKT 299 (302)
Q Consensus 292 ~~~~~~~~ 299 (302)
++++++++
T Consensus 314 ~~~~~~~~ 321 (321)
T 2pk3_A 314 ILQSYRQA 321 (321)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99888753
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=276.61 Aligned_cols=271 Identities=15% Similarity=0.140 Sum_probs=214.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------ecCCCChhhHHHHHhhcCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------SGRLENRASLEADIAAVKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------~~dl~~~~~~~~~~~~~~~ 63 (302)
++|+|||||||||||++|++.|+++|++|+++ .+|++|.+++.++++ ++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 103 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV 103 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CC
Confidence 35799999999999999999999999988763 357888888988888 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... ..++.|++++.|.
T Consensus 104 d~vih~A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~------~~~~~E~~~~~~~ 174 (352)
T 1sb8_A 104 DYVLHQAALG---SVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHP------GLPKVEDTIGKPL 174 (352)
T ss_dssp SEEEECCSCC---CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC------CSSBCTTCCCCCC
T ss_pred CEEEECCccc---CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCC------CCCCCCCCCCCCC
Confidence 9999999976 23345567888999999999999999999887 499999999998764 4567888877655
Q ss_pred CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc-------hhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 143 GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP-------RNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
+.|+.+|..+|.+++.+. +.+++||+++||+..... ..|+..+..+.+.. ...++|+|++|+
T Consensus 175 -~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dv 253 (352)
T 1sb8_A 175 -SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 253 (352)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHH
Confidence 899999999999987653 459999999999864321 23555666665432 245689999999
Q ss_pred HHHHHHHHhc---CCCCeEEecCCCccCHHHHHHHHHhhc---CCCCccccccccccceeeecCCCCCccCchhHHHhCC
Q 022112 206 LPISIEMAKR---NLTGIWNFTNPGVVSHNEILEMYRQYI---DPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 206 a~~~~~~~~~---~~~~~~~~~~~~~~s~~e~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
|++++.++.. ..+++||+++++.+|+.|+++.+.+.+ |.+...... .............+|++|+++.||
T Consensus 254 a~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~d~~k~~~~lG 329 (352)
T 1sb8_A 254 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPV----YRDFREGDVRHSLADISKAAKLLG 329 (352)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCE----EECCCTTCCSBCCBCCHHHHHHTC
T ss_pred HHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCce----ecCCCccchhhccCCHHHHHHHhC
Confidence 9999998875 245799999999999999999999999 877542110 000001111345789999999999
Q ss_pred -C-cchHHHHHHHHHhhchhhhc
Q 022112 280 -E-LLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 280 -~-~~~~~e~i~~~~~~~~~~~~ 300 (302)
. ..+++|+| ++++++++++.
T Consensus 330 ~~p~~~~~e~l-~~~~~~~~~~~ 351 (352)
T 1sb8_A 330 YAPKYDVSAGV-ALAMPWYIMFL 351 (352)
T ss_dssp CCCCCCHHHHH-HHHHHHHHHHT
T ss_pred CCCCCCHHHHH-HHHHHHHHHhc
Confidence 3 35999999 99999988764
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=277.34 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=211.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------------ecCCCChhhHHHHHhhc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------------SGRLENRASLEADIAAV 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------------~~dl~~~~~~~~~~~~~ 61 (302)
|+|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 46799999999999999999999999998863 35788888888888866
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
++|+|||+|+.. .......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++|++++.
T Consensus 81 ~~d~vih~A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~------~~~~~E~~~~~ 151 (348)
T 1ek6_A 81 SFMAVIHFAGLK---AVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQ------YLPLDEAHPTG 151 (348)
T ss_dssp CEEEEEECCSCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCS------SSSBCTTSCCC
T ss_pred CCCEEEECCCCc---CccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCC------CCCcCCCCCCC
Confidence 899999999976 23344567888999999999999999999887 599999999998654 56778888776
Q ss_pred CCCCchhhhHHHHHHHHHhhc------CceEEeeecccCCCCC---C------chhhHHHH----h-cccccc-------
Q 022112 141 FVGSFYSKTKAMVEELLKNFE------NVCTLRVRMPISSDLS---N------PRNFITKI----T-RYEKVV------- 193 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~------~~~~lR~~~v~g~~~~---~------~~~~~~~~----~-~~~~~~------- 193 (302)
|..+.|+.+|..+|.+++.+. +.+++||+++||+... + ...++..+ . .+..+.
T Consensus 152 p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 231 (348)
T 1ek6_A 152 GCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYD 231 (348)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSS
T ss_pred CCCCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCccc
Confidence 634899999999999987752 3489999999998421 1 12333332 2 222211
Q ss_pred ----cccCCcccHhhHHHHHHHHHhcC---CC-CeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCC
Q 022112 194 ----NIPNSMTILDELLPISIEMAKRN---LT-GIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRS 265 (302)
Q Consensus 194 ----~~~~~~i~v~D~a~~~~~~~~~~---~~-~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 265 (302)
...++|+|++|+|++++.+++++ .+ ++||+++++.+|+.|+++.+.+.+|.+.+....+.. .....
T Consensus 232 ~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~------~~~~~ 305 (348)
T 1ek6_A 232 TEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR------EGDVA 305 (348)
T ss_dssp SSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC------TTCCS
T ss_pred CCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCCC------Cccch
Confidence 23568999999999999998763 33 699999999999999999999999987543221110 01112
Q ss_pred CCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 266 NNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 266 ~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
...+|++|+++.|| +..+++++| +++++|++++.
T Consensus 306 ~~~~d~~k~~~~lG~~p~~~l~~~l-~~~~~w~~~~~ 341 (348)
T 1ek6_A 306 ACYANPSLAQEELGWTAALGLDRMC-EDLWRWQKQNP 341 (348)
T ss_dssp EECBCCHHHHHTTCCCCCCCHHHHH-HHHHHHHHHCT
T ss_pred hhccCHHHHHHhcCCCCCCCHHHHH-HHHHHHHHhcc
Confidence 35789999999999 335899999 99999987764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=275.87 Aligned_cols=253 Identities=13% Similarity=0.069 Sum_probs=204.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
||+||||| +||||++|++.|+++|++|++ +.+|++|.+++.++++. ++|+|||+|+..
T Consensus 3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~------ 74 (286)
T 3gpi_A 3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHL-RPEILVYCVAAS------ 74 (286)
T ss_dssp CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHH------
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCC------
Confidence 57999999 599999999999999999988 46789999998888873 499999999954
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHH
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLK 158 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~ 158 (302)
..++...+++|+.++.+++++|++.++ ++|++||.++|+... +.+++|+++..|. +.|+.+|..+|++ +
T Consensus 75 --~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~~-~ 144 (286)
T 3gpi_A 75 --EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEV------EEWLDEDTPPIAK-DFSGKRMLEAEAL-L 144 (286)
T ss_dssp --HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCC------SSEECTTSCCCCC-SHHHHHHHHHHHH-G
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCC------CCCCCCCCCCCCC-ChhhHHHHHHHHH-H
Confidence 356778889999999999999998886 599999999999765 5677888887766 8999999999999 7
Q ss_pred hhcCceEEeeecccCCCCCCchhhHHHHhccccc---ccccCCcccHhhHHHHHHHHHhc----CCCCeEEecCCCccCH
Q 022112 159 NFENVCTLRVRMPISSDLSNPRNFITKITRYEKV---VNIPNSMTILDELLPISIEMAKR----NLTGIWNFTNPGVVSH 231 (302)
Q Consensus 159 ~~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~~~s~ 231 (302)
.+.+.+++||+++||+. ...|+..+.. ... ....++|+|++|+|++++.++++ ..+++||+++++.+|+
T Consensus 145 ~~~~~~ilR~~~v~G~~---~~~~~~~~~~-~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 220 (286)
T 3gpi_A 145 AAYSSTILRFSGIYGPG---RLRMIRQAQT-PEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTDNQPLPV 220 (286)
T ss_dssp GGSSEEEEEECEEEBTT---BCHHHHHTTC-GGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECCSCCEEH
T ss_pred hcCCeEEEecccccCCC---chhHHHHHHh-cccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeCCCCCCH
Confidence 66666999999999984 3467777776 332 23567899999999999999987 3467999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--Cc-chHHHHHHHHHhhchhhh
Q 022112 232 NEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--EL-LSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 232 ~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~-~~~~e~i~~~~~~~~~~~ 299 (302)
.|+++.+.+.+|.+....... ....+..+|++|++ .|| +. ++|+|+| ++++++++.+
T Consensus 221 ~e~~~~i~~~~g~~~~~~~~~---------~~~~~~~~d~~k~~-~lG~~p~~~~l~e~l-~~~~~~~~~~ 280 (286)
T 3gpi_A 221 HDLLRWLADRQGIAYPAGATP---------PVQGNKKLSNARLL-ASGYQLIYPDYVSGY-GALLAAMREG 280 (286)
T ss_dssp HHHHHHHHHHTTCCCCCSCCC---------CBCSSCEECCHHHH-HTTCCCSSCSHHHHH-HHHHHHHTC-
T ss_pred HHHHHHHHHHcCCCCCCCCCc---------ccCCCeEeeHHHHH-HcCCCCcCCcHHHHH-HHHHHHHhcc
Confidence 999999999999876532111 11235679999998 899 33 3799999 9999888655
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=275.41 Aligned_cols=267 Identities=15% Similarity=0.171 Sum_probs=210.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC----C------------hhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE----N------------RASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~----~------------~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
++|+|||||||||||++|+++|+++|++|+++..+-. . .+.+...+. ++|+|||+|+..
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--~~d~vi~~a~~~--- 80 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS--DVRLVYHLASHK--- 80 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT--TEEEEEECCCCC---
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc--cCCEEEECCccC---
Confidence 4679999999999999999999999999999765433 1 111222233 799999999987
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
.......++...++ |+.++.+++++|++.++ ++|++||.++|+... ..++.|+++..|. +.|+.+|..+|+
T Consensus 81 ~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~------~~~~~E~~~~~p~-~~Y~~sK~~~E~ 152 (321)
T 3vps_A 81 SVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD------TLPTPEDSPLSPR-SPYAASKVGLEM 152 (321)
T ss_dssp CHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCS------SSSBCTTSCCCCC-SHHHHHHHHHHH
T ss_pred ChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCC------CCCCCCCCCCCCC-ChhHHHHHHHHH
Confidence 34445566677777 99999999999999986 599999999999765 5677888887765 899999999999
Q ss_pred HHHhhc------CceEEeeecccCCCCCC---chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcCCCCeE
Q 022112 156 LLKNFE------NVCTLRVRMPISSDLSN---PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRNLTGIW 221 (302)
Q Consensus 156 ~~~~~~------~~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 221 (302)
+++.+. +.+++||+++||+.... ...++..+..+..+. ...++|+|++|+|++++.+++++..|+|
T Consensus 153 ~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~g~~ 232 (321)
T 3vps_A 153 VAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSVV 232 (321)
T ss_dssp HHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCCSEE
T ss_pred HHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCCCeE
Confidence 987753 45899999999987533 224555566665432 2467899999999999999998665799
Q ss_pred EecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-C--cchHHHHHHHHHhhchhh
Q 022112 222 NFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-E--LLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 222 ~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~--~~~~~e~i~~~~~~~~~~ 298 (302)
|+++++.+|+.|+++.+. .+|.+..+...+.. ........+|++|+++.|| . ..+++++| +++++++++
T Consensus 233 ~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~------~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l-~~~~~~~~~ 304 (321)
T 3vps_A 233 NFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR------PNEITEFRADTALQTRQIGERSGGIGIEEGI-RLTLEWWQS 304 (321)
T ss_dssp EESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC------TTCCSBCCBCCHHHHHHHCCCSCCCCHHHHH-HHHHHHHHT
T ss_pred EecCCCcccHHHHHHHHH-HhCCCCccccCCCC------CCCcceeeccHHHHHHHhCCCCCcCCHHHHH-HHHHHHHHh
Confidence 999999999999999999 99988664322111 1112356899999999999 4 48999999 999999887
Q ss_pred hc
Q 022112 299 TT 300 (302)
Q Consensus 299 ~~ 300 (302)
+.
T Consensus 305 ~~ 306 (321)
T 3vps_A 305 RD 306 (321)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-38 Score=276.35 Aligned_cols=279 Identities=18% Similarity=0.113 Sum_probs=212.1
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------------ecCCCChhhHHHHHh
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------------SGRLENRASLEADIA 59 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------------~~dl~~~~~~~~~~~ 59 (302)
+..|||+|||||||||||++|++.|+++|++|+++ .+|++|.+++.++++
T Consensus 20 ~~~M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (375)
T 1t2a_A 20 QGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIIN 99 (375)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHH
T ss_pred HhhcCcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHH
Confidence 34455799999999999999999999999988762 357888888999988
Q ss_pred hcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----eEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 60 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 60 ~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
..++|+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++|
T Consensus 100 ~~~~d~vih~A~~~---~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~------~~~~~E 170 (375)
T 1t2a_A 100 EVKPTEIYNLGAQS---HVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ------EIPQKE 170 (375)
T ss_dssp HHCCSEEEECCSCC---CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS------SSSBCT
T ss_pred hcCCCEEEECCCcc---cccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC------CCCCCc
Confidence 76799999999976 34344567888999999999999999999875 699999999998654 456788
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc------hhhHHHHhccccc--c----cccCC
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP------RNFITKITRYEKV--V----NIPNS 198 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~--~----~~~~~ 198 (302)
+++..|. +.|+.+|..+|.+++.+.. .+++|+..+||+..... ..++..+..+... . ...++
T Consensus 171 ~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~ 249 (375)
T 1t2a_A 171 TTPFYPR-SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRD 249 (375)
T ss_dssp TSCCCCC-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEEC
T ss_pred cCCCCCC-ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceee
Confidence 8777655 8999999999999876532 37899999999854221 1233444455421 1 24678
Q ss_pred cccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccc--cccc-----------ccce--eeecC
Q 022112 199 MTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN--FTLE-----------EQAK--VIVAP 263 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~--~~~~-----------~~~~--~~~~~ 263 (302)
|+|++|+|++++.+++++..++||+++++.+|+.|+++.+.+.+|.+..+.. ++.. .... .....
T Consensus 250 ~i~v~Dva~a~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 329 (375)
T 1t2a_A 250 WGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTE 329 (375)
T ss_dssp CEEHHHHHHHHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSC
T ss_pred eEEHHHHHHHHHHHHhcCCCceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCccc
Confidence 9999999999999998877789999999999999999999999998754210 1100 0000 00111
Q ss_pred CCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 264 RSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 264 ~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
.....+|++|+++.|| +..+|+|+| +++++++++.
T Consensus 330 ~~~~~~d~~k~~~~lG~~p~~~l~e~l-~~~~~~~~~~ 366 (375)
T 1t2a_A 330 VDFLQGDCTKAKQKLNWKPRVAFDELV-REMVHADVEL 366 (375)
T ss_dssp CCBCCBCCHHHHHHHCCCCCSCHHHHH-HHHHHHHHHH
T ss_pred chhhcCCHHHHHHhcCCCccCCHHHHH-HHHHHHHHHh
Confidence 1245689999999999 334899999 8888887654
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=275.81 Aligned_cols=274 Identities=17% Similarity=0.145 Sum_probs=211.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC--CCcEEEe-----------------------ecCCCChhhHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYG-----------------------SGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~-----------------------~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
||+|||||||||||++|+++|+++ |++|+++ .+|++|.+++.++++ ++|+|||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih 81 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIVH 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEEE
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhh--cCCEEEE
Confidence 679999999999999999999998 8888763 358889999999998 7899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCC-C-----CCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG-H-----PLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~-----~~~~~~~~~e~~~~~~~ 142 (302)
+|+.. ....+..++...+++|+.++.+++++|++.++++|++||.++|+.... . ...+..+++|+++..+.
T Consensus 82 ~A~~~---~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 158 (348)
T 1oc2_A 82 YAAES---HNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPS 158 (348)
T ss_dssp CCSCC---CHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCC
T ss_pred CCccc---CccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCCCCCCCC
Confidence 99976 333455677889999999999999999998889999999999986431 0 00012577888776554
Q ss_pred CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPIS 209 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~ 209 (302)
+.|+.+|..+|.+++.+. +.+++||+++||+..... ..++..+..+.... ...++|+|++|+|+++
T Consensus 159 -~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~ 237 (348)
T 1oc2_A 159 -SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGV 237 (348)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHH
Confidence 899999999999987753 338999999999865321 23455555555422 2456899999999999
Q ss_pred HHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--Ccch-HH
Q 022112 210 IEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLS-IK 285 (302)
Q Consensus 210 ~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~-~~ 285 (302)
+.+++++. +++||+++++.+|+.|+++.+.+.+|.+.....+... .........+|++|+++.|| +..+ ++
T Consensus 238 ~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 312 (348)
T 1oc2_A 238 WAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTD-----RAGHDLRYAIDASKLRDELGWTPQFTDFS 312 (348)
T ss_dssp HHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECC-----CTTCCCBCCBCCHHHHHHHCCCCSCCCHH
T ss_pred HHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCC-----CCCcccccccCHHHHHHHcCCCCCCCcHH
Confidence 99998654 4599999999999999999999999987532221110 01111234689999999999 3335 99
Q ss_pred HHHHHHHhhchhhh
Q 022112 286 ESLIKYVFEPNKKT 299 (302)
Q Consensus 286 e~i~~~~~~~~~~~ 299 (302)
++| ++++++++++
T Consensus 313 ~~l-~~~~~~~~~~ 325 (348)
T 1oc2_A 313 EGL-EETIQWYTDN 325 (348)
T ss_dssp HHH-HHHHHHHHHT
T ss_pred HHH-HHHHHHHHHh
Confidence 999 8888888654
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=272.89 Aligned_cols=268 Identities=16% Similarity=0.155 Sum_probs=209.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEE------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
+|+|||||||||||++|+++|+++| ++|++ +.+|++|.+++.+++. ++|+||
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi 80 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDGVV 80 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSEEE
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCEEE
Confidence 4789999999999999999999986 77765 3468888889998886 899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
|+|+.. ....+..++...+++|+.++.+++++|++.+. ++|++||.++||... +.+++|+++..+. +.
T Consensus 81 h~A~~~---~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~------~~~~~E~~~~~~~-~~ 150 (336)
T 2hun_A 81 HLAAES---HVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL------KGSFTENDRLMPS-SP 150 (336)
T ss_dssp ECCCCC---CHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS------SSCBCTTBCCCCC-SH
T ss_pred ECCCCc---ChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC------CCCcCCCCCCCCC-Cc
Confidence 999976 33345567888999999999999999998864 799999999998654 4567887766554 89
Q ss_pred hhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 146 YSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
|+.+|..+|.+++.+. +.+++||+++||+..... ..++..+..+.... ...++|+|++|+|++++.+
T Consensus 151 Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~ 230 (336)
T 2hun_A 151 YSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELV 230 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHH
Confidence 9999999999987753 238999999999865221 23455555555422 2456899999999999999
Q ss_pred HhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 213 AKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 213 ~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
++++. +++||+++++.+|+.|+++.+.+.+|.+.....+... .........+|++|++++|| +..+++++|
T Consensus 231 ~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l- 304 (336)
T 2hun_A 231 LLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVED-----RPGHDLRYSLDSWKITRDLKWRPKYTFDEGI- 304 (336)
T ss_dssp HHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECC-----CTTCCCCCCBCCHHHHHHHCCCCSSCHHHHH-
T ss_pred HhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCC-----CCCchhhhcCCHHHHHHHhCCCCCCCHHHHH-
Confidence 98654 4699999999999999999999999987432221110 01111234689999999999 345899999
Q ss_pred HHHhhchhhh
Q 022112 290 KYVFEPNKKT 299 (302)
Q Consensus 290 ~~~~~~~~~~ 299 (302)
++++++++++
T Consensus 305 ~~~~~~~~~~ 314 (336)
T 2hun_A 305 KKTIDWYLKN 314 (336)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888888664
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=277.06 Aligned_cols=273 Identities=18% Similarity=0.205 Sum_probs=213.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
+||+|||||||||||++|+++|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+...
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~~ 105 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADMG 105 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceecC
Confidence 5789999999999999999999999999887 3578999999999998 8999999999762
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC--CCCCCCCchhhhHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED--TPNFVGSFYSKTKA 151 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~--~~~~~~~~Y~~~K~ 151 (302)
.......++...+++|+.++.+++++|++.++ ++|++||.++|+.....+.+ ..+++|++ +..+ .+.|+.+|.
T Consensus 106 --~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~-~~~~~E~~~~~~~~-~~~Y~~sK~ 181 (379)
T 2c5a_A 106 --GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETT-NVSLKESDAWPAEP-QDAFGLEKL 181 (379)
T ss_dssp --CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSS-SCEECGGGGSSBCC-SSHHHHHHH
T ss_pred --cccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCcc-CCCcCcccCCCCCC-CChhHHHHH
Confidence 11122567888999999999999999999887 59999999999864321100 23466765 3333 489999999
Q ss_pred HHHHHHHhhc-----CceEEeeecccCCCCCC-------chhhHHHHhcccc-cc-----cccCCcccHhhHHHHHHHHH
Q 022112 152 MVEELLKNFE-----NVCTLRVRMPISSDLSN-------PRNFITKITRYEK-VV-----NIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 152 ~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~-~~-----~~~~~~i~v~D~a~~~~~~~ 213 (302)
.+|.+++.+. +.+++||+++||+.... ...|+..+..+.. +. ...++|+|++|+|++++.++
T Consensus 182 ~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l 261 (379)
T 2c5a_A 182 ATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT 261 (379)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHh
Confidence 9999987653 33899999999986432 1245666655544 21 24678999999999999999
Q ss_pred hcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-Cc-chHHHHHHHH
Q 022112 214 KRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-EL-LSIKESLIKY 291 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~-~~~~e~i~~~ 291 (302)
+++.+++||+++++.+|+.|+++.+.+.+|.+......+... ......+|++|+++.|| .+ .+++++| ++
T Consensus 262 ~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~-------~~~~~~~d~~k~~~~lG~~p~~~l~e~l-~~ 333 (379)
T 2c5a_A 262 KSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-------GVRGRNSDNNLIKEKLGWAPNMRLKEGL-RI 333 (379)
T ss_dssp HSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCCC-------CCSBCEECCHHHHHHHSCCCCCCHHHHH-HH
T ss_pred hccCCCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCCC-------CcccccCCHHHHHHHhCCCCCCCHHHHH-HH
Confidence 887778999999999999999999999999876543222110 11235789999999999 33 4899999 88
Q ss_pred Hhhchhhh
Q 022112 292 VFEPNKKT 299 (302)
Q Consensus 292 ~~~~~~~~ 299 (302)
++++++++
T Consensus 334 ~~~~~~~~ 341 (379)
T 2c5a_A 334 TYFWIKEQ 341 (379)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888765
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=278.09 Aligned_cols=268 Identities=16% Similarity=0.124 Sum_probs=203.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|+|||||||||||++|+++|+++| ++|++ +.+|++|.+++.++++ ++|+|||+|+
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~A~ 108 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHLAT 108 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEECCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEECCC
Confidence 35799999999999999999999999 88876 3467888888888888 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccccCCCCCCCCCCCCCC--CCC---CC-CCCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIFEYDSGHPLGSGIGFK--EED---TP-NFVG 143 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~~~~~~~~--e~~---~~-~~~~ 143 (302)
.. ....+..++...+++|+.++.+++++|++. ++ ++|++||.++|+... ..++. |++ +. .+ .
T Consensus 109 ~~---~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~------~~~~~~~E~~~~~~~~~~-~ 178 (377)
T 2q1s_A 109 YH---GNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKT------FDDAKATEETDIVSLHNN-D 178 (377)
T ss_dssp CS---CHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------------CCCCCCCSSCC-C
T ss_pred cc---CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCC------CCCcCcccccccccccCC-C
Confidence 76 244445678899999999999999999998 77 599999999999754 34566 766 44 33 4
Q ss_pred CchhhhHHHHHHHHHhhc-----CceEEeeecccCCCC---------CC-------chhhHHHHhcccccc-----cccC
Q 022112 144 SFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDL---------SN-------PRNFITKITRYEKVV-----NIPN 197 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~---------~~-------~~~~~~~~~~~~~~~-----~~~~ 197 (302)
+.|+.+|..+|.+++.+. +.+++||+++||+.. .. ...++..+..+.++. ...+
T Consensus 179 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~ 258 (377)
T 2q1s_A 179 SPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATR 258 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEE
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEE
Confidence 899999999999987653 459999999999865 11 123455555665422 2467
Q ss_pred CcccHhhHHHH-HHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCC-CCccCchhHH
Q 022112 198 SMTILDELLPI-SIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRS-NNELDASKLK 275 (302)
Q Consensus 198 ~~i~v~D~a~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~k~~ 275 (302)
+|+|++|+|++ ++.+++++..|+||+++++.+|+.|+++.+.+.+|.+..+...+.. ..... ...+|++|++
T Consensus 259 ~~i~v~Dva~a~i~~~~~~~~~g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~------~~~~~~~~~~d~~k~~ 332 (377)
T 2q1s_A 259 DFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKR------PWDNSGKRFGSPEKAR 332 (377)
T ss_dssp CCEEHHHHHHHHHHHHHHCCTTEEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCCC------GGGCC-CCCCCCHHHH
T ss_pred eeEEHHHHHHHHHHHHHhcCCCCeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCCC------ccccccccccCHHHHH
Confidence 89999999999 9999987655699999999999999999999999987553222211 11112 4679999999
Q ss_pred HhCC--CcchHHHHHHHHHhhchhhh
Q 022112 276 TEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 276 ~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+.|| +..+++|+| ++++++++++
T Consensus 333 ~~lG~~p~~~l~e~l-~~~~~~~~~~ 357 (377)
T 2q1s_A 333 RELGFSADVSIDDGL-RKTIEWTKAN 357 (377)
T ss_dssp HHHCCCCCCCHHHHH-HHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHH-HHHHHHHHHh
Confidence 9999 335899999 8888888765
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=274.91 Aligned_cols=272 Identities=21% Similarity=0.272 Sum_probs=211.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
+|+|||||||||||++|+++|+++|++|++ +.+|+++.+++.++++..++|+|||+|
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 88 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA 88 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECC
Confidence 479999999999999999999999999886 346888999999999866799999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
+.. ....+..++...+++|+.++.+++++|++.+ + ++|++||.++|+.... ..++.|+++..+. +.|+.
T Consensus 89 ~~~---~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-----~~~~~E~~~~~~~-~~Y~~ 159 (357)
T 1rkx_A 89 AQP---LVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-----IWGYRENEAMGGY-DPYSN 159 (357)
T ss_dssp SCC---CHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-----SSCBCTTSCBCCS-SHHHH
T ss_pred CCc---ccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-----CCCCCCCCCCCCC-CccHH
Confidence 965 3444567788999999999999999999886 5 5999999999986531 2366777666544 89999
Q ss_pred hHHHHHHHHHhhc--------------CceEEeeecccCCCCCCch----hhHHHHhcccccc----cccCCcccHhhHH
Q 022112 149 TKAMVEELLKNFE--------------NVCTLRVRMPISSDLSNPR----NFITKITRYEKVV----NIPNSMTILDELL 206 (302)
Q Consensus 149 ~K~~~E~~~~~~~--------------~~~~lR~~~v~g~~~~~~~----~~~~~~~~~~~~~----~~~~~~i~v~D~a 206 (302)
+|..+|++++.+. ..+++||+++||+...... .++..+..+..+. ...++|+|++|+|
T Consensus 160 sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva 239 (357)
T 1rkx_A 160 SKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPL 239 (357)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHH
Confidence 9999999987653 2379999999998653222 3445555555432 2467899999999
Q ss_pred HHHHHHHhc------CCCCeEEecCC--CccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhC
Q 022112 207 PISIEMAKR------NLTGIWNFTNP--GVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEF 278 (302)
Q Consensus 207 ~~~~~~~~~------~~~~~~~~~~~--~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 278 (302)
++++.++++ ..+++||++++ +.+|+.|+++.+.+.+|.+..+..... ..........+|++|+++.|
T Consensus 240 ~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-----~~~~~~~~~~~d~~k~~~~l 314 (357)
T 1rkx_A 240 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN-----AHPHEAHYLKLDCSKAKMQL 314 (357)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC------------CCCCCCBCCHHHHHHH
T ss_pred HHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCC-----CCCcCcccccCCHHHHHHHh
Confidence 999998874 34679999984 689999999999999998765321110 01111234679999999999
Q ss_pred C--CcchHHHHHHHHHhhchhhhc
Q 022112 279 P--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 279 g--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
| +..+|+++| ++++++++++.
T Consensus 315 G~~p~~~l~e~l-~~~~~~~~~~~ 337 (357)
T 1rkx_A 315 GWHPRWNLNTTL-EYIVGWHKNWL 337 (357)
T ss_dssp CCCCCCCHHHHH-HHHHHHHHHHH
T ss_pred CCCcCCcHHHHH-HHHHHHHHHHh
Confidence 9 335999999 88888887653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=272.02 Aligned_cols=274 Identities=13% Similarity=0.075 Sum_probs=206.2
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++|+|||||||||||++|+++|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 11 ~~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~ 88 (342)
T 2x4g_A 11 GAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYY 88 (342)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC----
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccC
Confidence 34579999999999999999999999999887 3568899999999998 899999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC---CCchhhh
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV---GSFYSKT 149 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~---~~~Y~~~ 149 (302)
. ....++...+++|+.++.+++++|++.++ ++|++||.++|+..... ..+ +|+++..|. .+.|+.+
T Consensus 89 ~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~----~~~-~E~~~~~p~~~~~~~Y~~s 158 (342)
T 2x4g_A 89 P-----SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQG----LPG-HEGLFYDSLPSGKSSYVLC 158 (342)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTS----SCB-CTTCCCSSCCTTSCHHHHH
T ss_pred c-----CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCC----CCC-CCCCCCCccccccChHHHH
Confidence 1 23456778899999999999999999886 59999999999865420 133 777776651 4899999
Q ss_pred HHHHHHHHHhh----cCceEEeeecccCCCCCC--chhhHHHHhcccccc--cccCCcccHhhHHHHHHHHHhcCC-CCe
Q 022112 150 KAMVEELLKNF----ENVCTLRVRMPISSDLSN--PRNFITKITRYEKVV--NIPNSMTILDELLPISIEMAKRNL-TGI 220 (302)
Q Consensus 150 K~~~E~~~~~~----~~~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~-~~~ 220 (302)
|..+|.+++.+ .+.+++||+++||+.... ...++..+..+.... ...++|+|++|+|++++.+++++. +++
T Consensus 159 K~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~g~~ 238 (342)
T 2x4g_A 159 KWALDEQAREQARNGLPVVIGIPGMVLGELDIGPTTGRVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRIGER 238 (342)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSCSTTHHHHHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHHhhcCCcEEEEeCCceECCCCccccHHHHHHHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCCCce
Confidence 99999998775 345999999999986411 345666666665432 356689999999999999998754 679
Q ss_pred EEecCCCccCHHHHHHHHHhhcCCCCcccccccccc--------------ce------eeecC-CCCCccCchhHHHhCC
Q 022112 221 WNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQ--------------AK------VIVAP-RSNNELDASKLKTEFP 279 (302)
Q Consensus 221 ~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~--------------~~------~~~~~-~~~~~~d~~k~~~~lg 279 (302)
||+++++ +|+.|+++.+.+.+|.+..+ ..+.... .. ..... .....+|++|+++.||
T Consensus 239 ~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 316 (342)
T 2x4g_A 239 YLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELG 316 (342)
T ss_dssp EEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------------CCTTCCCCBCCHHHHHHHC
T ss_pred EEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChHHHHHhCC
Confidence 9999998 99999999999999987654 3222110 00 00000 1245799999999988
Q ss_pred C--cchHHHHHHHHHhhchhhhc
Q 022112 280 E--LLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 280 ~--~~~~~e~i~~~~~~~~~~~~ 300 (302)
+ +++++++| ++++++++++.
T Consensus 317 ~~~p~~~~~~l-~~~~~~~~~~g 338 (342)
T 2x4g_A 317 FFSTTALDDTL-LRAIDWFRDNG 338 (342)
T ss_dssp CCCCSCHHHHH-HHHHHHHHHTT
T ss_pred CCCCCCHHHHH-HHHHHHHHHcC
Confidence 6 47999999 99999987764
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=271.37 Aligned_cols=267 Identities=15% Similarity=0.140 Sum_probs=209.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC---C---CcEEE------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ---S---IDFTY------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~---g---~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
|||||||||||||++|+++|+++ | ++|++ +.+|++|.+++.+++. ++|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d 78 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVD 78 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--CCC
Confidence 68999999999999999999996 7 88775 3467888888988886 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... +.+++|+++..+.
T Consensus 79 ~Vih~A~~~---~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~------~~~~~E~~~~~~~- 148 (337)
T 1r6d_A 79 AIVHFAAES---HVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID------SGSWTESSPLEPN- 148 (337)
T ss_dssp EEEECCSCC---CHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS------SSCBCTTSCCCCC-
T ss_pred EEEECCCcc---CchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCC------CCCCCCCCCCCCC-
Confidence 999999976 33344567788999999999999999999987 699999999998654 4567887766554
Q ss_pred CchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccHhhHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTILDELLPISI 210 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~ 210 (302)
+.|+.+|..+|.+++.+. +.+++||+++||+..... ..++..+..+.... ...++|+|++|+|++++
T Consensus 149 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 228 (337)
T 1r6d_A 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIA 228 (337)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHH
Confidence 899999999999987653 348999999999865321 23455555555422 23568999999999999
Q ss_pred HHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHH
Q 022112 211 EMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKES 287 (302)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~ 287 (302)
.+++++. +++||+++++.+|+.|+++.+.+.+|.+.....+.. ..........+|++|+++.|| +..+++++
T Consensus 229 ~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-----~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~ 303 (337)
T 1r6d_A 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA-----DRKGHDLRYSLDGGKIERELGYRPQVSFADG 303 (337)
T ss_dssp HHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC-----CCTTCCCBCCBCCHHHHHHHCCCCCSCHHHH
T ss_pred HHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecC-----CCCCCcceeecCHHHHHHHcCCCCCCCHHHH
Confidence 9998654 469999999999999999999999998743221110 001111234689999999999 34589999
Q ss_pred HHHHHhhchhhh
Q 022112 288 LIKYVFEPNKKT 299 (302)
Q Consensus 288 i~~~~~~~~~~~ 299 (302)
| ++++++++++
T Consensus 304 l-~~~~~~~~~~ 314 (337)
T 1r6d_A 304 L-ARTVRWYREN 314 (337)
T ss_dssp H-HHHHHHHHHC
T ss_pred H-HHHHHHHHhc
Confidence 9 8888887654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=271.57 Aligned_cols=277 Identities=16% Similarity=0.231 Sum_probs=210.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
||+|||||||||||++|++.|+++|++|+++ .+|++|.+++.++++..++|+|||+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 5799999999999999999999999998873 3588889999999985569999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCC----------CCCCCCCCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLG----------SGIGFKEED 137 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~----------~~~~~~e~~ 137 (302)
|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+.....|.. ...++.|+.
T Consensus 81 A~~~---~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~ 157 (347)
T 1orr_A 81 AGQV---AMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 157 (347)
T ss_dssp CCCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTS
T ss_pred Cccc---ChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccC
Confidence 9976 33344567888999999999999999999876 59999999999865432210 012356666
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc------hhhHHHHhccc-----ccc-----ccc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP------RNFITKITRYE-----KVV-----NIP 196 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~------~~~~~~~~~~~-----~~~-----~~~ 196 (302)
+..+. +.|+.+|..+|.+++.+. ..+++||+++||+..... ..++..++.+. +.. ...
T Consensus 158 ~~~~~-~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 236 (347)
T 1orr_A 158 QLDFH-SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV 236 (347)
T ss_dssp CCCCC-HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred CCCCC-CchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEecCCcce
Confidence 55544 899999999999987763 348999999999864321 23445555444 221 245
Q ss_pred CCcccHhhHHHHHHHHHhc--C-CCCeEEecCCC--ccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCc
Q 022112 197 NSMTILDELLPISIEMAKR--N-LTGIWNFTNPG--VVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDA 271 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~--~-~~~~~~~~~~~--~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 271 (302)
++|+|++|+|++++.+++. . .+++||++++. .+|+.|+++.+.+.+|.+..+...+. .........+|+
T Consensus 237 ~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~ 310 (347)
T 1orr_A 237 RDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV------RESDQRVFVADI 310 (347)
T ss_dssp EECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC------CSSCCSEECBCC
T ss_pred EeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCCC------CCCCcceeecCH
Confidence 6799999999999999874 2 34599999986 59999999999999998765332211 111112457899
Q ss_pred hhHHHhCC-Cc-chHHHHHHHHHhhchhhhcC
Q 022112 272 SKLKTEFP-EL-LSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 272 ~k~~~~lg-~~-~~~~e~i~~~~~~~~~~~~~ 301 (302)
+|+++.|| .+ .+|+|+| ++++++++++.+
T Consensus 311 ~k~~~~lG~~p~~~~~e~l-~~~~~~~~~~~~ 341 (347)
T 1orr_A 311 KKITNAIDWSPKVSAKDGV-QKMYDWTSSILE 341 (347)
T ss_dssp HHHHHHHCCCCCSCHHHHH-HHHHHHHHHC--
T ss_pred HHHHHHHCCCccCCHHHHH-HHHHHHHHHHHH
Confidence 99999999 33 5999999 999999887753
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=268.67 Aligned_cols=276 Identities=16% Similarity=0.105 Sum_probs=211.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+|+|||||||||||++|+++|+++|++|+++ .+|++|.+++.++++..++|+|||+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 82 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL 82 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 4799999999999999999999999998762 3588888899999887678999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++||... ..++.|+.+..+. +.|+
T Consensus 83 A~~~---~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~------~~~~~e~~~~~~~-~~Y~ 152 (345)
T 2z1m_A 83 AAQS---FVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQ------EIPQTEKTPFYPR-SPYA 152 (345)
T ss_dssp CCCC---CHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCS------SSSBCTTSCCCCC-SHHH
T ss_pred CCCc---chhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC------CCCCCccCCCCCC-ChhH
Confidence 9976 34445667889999999999999999998874 699999999999765 4567777766554 8999
Q ss_pred hhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc--hh----hHHHHhccccc--c----cccCCcccHhhHHHHHH
Q 022112 148 KTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP--RN----FITKITRYEKV--V----NIPNSMTILDELLPISI 210 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~--~~----~~~~~~~~~~~--~----~~~~~~i~v~D~a~~~~ 210 (302)
.+|..+|.+++.+.. ..++|+.++||++.... .. ++..+..+... . ...++|+|++|+|++++
T Consensus 153 ~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~ 232 (345)
T 2z1m_A 153 VAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMW 232 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHH
Confidence 999999999877632 27789999999864221 11 23333344321 1 24568999999999999
Q ss_pred HHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccc--cccc-----------ccce--eeecCCCCCccCchhHH
Q 022112 211 EMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN--FTLE-----------EQAK--VIVAPRSNNELDASKLK 275 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~--~~~~-----------~~~~--~~~~~~~~~~~d~~k~~ 275 (302)
.+++++..++||+++++.+|+.|+++.+.+.+|.+..+.. ++.. .... ..........+|++|++
T Consensus 233 ~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 312 (345)
T 2z1m_A 233 LMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAM 312 (345)
T ss_dssp HHHTSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHH
T ss_pred HHHhCCCCceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceeecCHHHHH
Confidence 9998876789999999999999999999999998754321 0000 0000 00111124568999999
Q ss_pred HhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 276 TEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 276 ~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+.|| +..+|+|+| ++++++++++.
T Consensus 313 ~~lG~~p~~~~~~~l-~~~~~~~~~~~ 338 (345)
T 2z1m_A 313 KKLGWKPRTTFDELV-EIMMEADLKRV 338 (345)
T ss_dssp HHHCCCCCSCHHHHH-HHHHHHHHHHH
T ss_pred HHcCCcccCCHHHHH-HHHHHHHHHHh
Confidence 9999 335899999 88888887653
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=267.67 Aligned_cols=274 Identities=14% Similarity=0.136 Sum_probs=207.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------eecCCCCh-hhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------GSGRLENR-ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------~~~dl~~~-~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|+|||||||||||++++++|+++ |++|++ +.+|++|. +.+.++++ ++|+|||+|+..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~d~vih~A~~~ 78 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAIA 78 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhcc--CCCEEEEccccc
Confidence 68999999999999999999998 899876 45688874 56777887 799999999976
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC------CCCCchh
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN------FVGSFYS 147 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~------~~~~~Y~ 147 (302)
.......++...+++|+.++.+++++|++.+.++|++||.++|+... ..+++|+++.. .+.+.|+
T Consensus 79 ---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~------~~~~~e~~~~~~~~~~~~~~~~Y~ 149 (345)
T 2bll_A 79 ---TPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCS------DKYFDEDHSNLIVGPVNKPRWIYS 149 (345)
T ss_dssp ---CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCC------CSSBCTTTCCCBCCCTTCGGGHHH
T ss_pred ---CccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCC------CCCcCCcccccccCcccCcccccH
Confidence 23334567888999999999999999999886799999999999764 34566665431 2235899
Q ss_pred hhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-------c----hhhHHHHhcccccc-----cccCCcccHhhHH
Q 022112 148 KTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-------P----RNFITKITRYEKVV-----NIPNSMTILDELL 206 (302)
Q Consensus 148 ~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-------~----~~~~~~~~~~~~~~-----~~~~~~i~v~D~a 206 (302)
.+|..+|++++.+. +.+++||+++||+.... . ..++..+..+.... ...++|+|++|+|
T Consensus 150 ~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva 229 (345)
T 2bll_A 150 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGI 229 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHH
Confidence 99999999987653 45999999999986431 1 23455556665432 2456899999999
Q ss_pred HHHHHHHhcC----CCCeEEecCCC-ccCHHHHHHHHHhhcCCCCccccccccccce-----ee----ecCCCCCccCch
Q 022112 207 PISIEMAKRN----LTGIWNFTNPG-VVSHNEILEMYRQYIDPNFTWKNFTLEEQAK-----VI----VAPRSNNELDAS 272 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~-~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~-----~~----~~~~~~~~~d~~ 272 (302)
++++.+++++ .+++||+++++ .+|+.|+++.+.+.+|.+.....++...... .. ........+|++
T Consensus 230 ~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 309 (345)
T 2bll_A 230 EALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR 309 (345)
T ss_dssp HHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCH
T ss_pred HHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhcccHH
Confidence 9999999864 24699999986 8999999999999998764432222111000 00 001124578999
Q ss_pred hHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 273 KLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 273 k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
|++++|| +..+++++| ++++++++++.
T Consensus 310 k~~~~lG~~p~~~l~~~l-~~~~~~~~~~~ 338 (345)
T 2bll_A 310 NAHRCLDWEPKIDMQETI-DETLDFFLRTV 338 (345)
T ss_dssp HHHHHHCCCCCCCHHHHH-HHHHHHHHHHS
T ss_pred HHHHhcCCCccccHHHHH-HHHHHHHHHcC
Confidence 9999999 335999999 99999887765
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=265.92 Aligned_cols=267 Identities=14% Similarity=0.140 Sum_probs=206.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
+||+|||||||||||++|+++|+++|++|++ +.+|++|.+++.++++..++|+|||+|+.
T Consensus 20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~ 99 (333)
T 2q1w_A 20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS 99 (333)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence 5689999999999999999999999999876 34688888999999985569999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCcccc----CCCCCCCCCCCCCCCCCCCCCCC-Cch
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFE----YDSGHPLGSGIGFKEEDTPNFVG-SFY 146 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~----~~~~~~~~~~~~~~e~~~~~~~~-~~Y 146 (302)
.. .. +..++. +++|+.++.+++++|++.++ ++|++||.++|+ ... . +++|++ .+. +.|
T Consensus 100 ~~---~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~------~-~~~E~~---~p~~~~Y 163 (333)
T 2q1w_A 100 YK---DP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQP------V-RLDHPR---NPANSSY 163 (333)
T ss_dssp CS---CT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSS------B-CTTSCC---CCTTCHH
T ss_pred cC---CC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCC------C-CcCCCC---CCCCCch
Confidence 63 21 233444 89999999999999999887 699999999998 332 2 667776 244 799
Q ss_pred hhhHHHHHHHHHh-hcCceEEeeecccCCCCC--CchhhHHHHhcccccc--cccCCcccHhhHHHHHHHHHhcCCCCeE
Q 022112 147 SKTKAMVEELLKN-FENVCTLRVRMPISSDLS--NPRNFITKITRYEKVV--NIPNSMTILDELLPISIEMAKRNLTGIW 221 (302)
Q Consensus 147 ~~~K~~~E~~~~~-~~~~~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~--~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 221 (302)
+.+|..+|.+++. +.+.+++||+++||+... ....++..+..+.... ...++++|++|+|++++.+++.+.+++|
T Consensus 164 ~~sK~~~E~~~~~s~~~~~ilR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~g~~~ 243 (333)
T 2q1w_A 164 AISKSANEDYLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVGHGAY 243 (333)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESEEESTTCCSSHHHHHHHHHHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHhhhCCeEEEeeceEECcCCcCcHHHHHHHHHHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCCCCEE
Confidence 9999999999988 777799999999998631 1123455555544221 3467899999999999999987556799
Q ss_pred EecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 222 NFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 222 ~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
|+++++.+|+.|+++.+.+.+|.+ .+...+... ...........+|++|+++. | +..+++++| ++++++++++
T Consensus 244 ~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~~~~~~d~~k~~~~-G~~p~~~~~~~l-~~~~~~~~~~ 318 (333)
T 2q1w_A 244 HFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRE--LGPDDAPSILLDPSRTIQDF-GKIEFTPLKETV-AAAVAYFREY 318 (333)
T ss_dssp ECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEE--CCTTSCCCCCBCCHHHHHHH-CCCCCCCHHHHH-HHHHHHHHHH
T ss_pred EeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCC--cccccccccccCCHHHHHhc-CCCcCCCHHHHH-HHHHHHHHHH
Confidence 999999999999999999999987 322222111 00000113567999999998 9 346899999 9999988765
Q ss_pred c
Q 022112 300 T 300 (302)
Q Consensus 300 ~ 300 (302)
.
T Consensus 319 ~ 319 (333)
T 2q1w_A 319 G 319 (333)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=268.11 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=203.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC--CCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTY----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|+|+|||||||||||++|+++|+++ |++|++ +.+|++|.+++.+++++.++|+|||+|+..
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~- 79 (312)
T 2yy7_A 1 MNPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALL- 79 (312)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC-
T ss_pred CCceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccC-
Confidence 4579999999999999999999998 899887 457899999999999877899999999976
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~ 153 (302)
......++...+++|+.++.+++++|++.++ ++|++||.++|+.... ..+..|+.+..|. +.|+.+|..+
T Consensus 80 ---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~-----~~~~~e~~~~~~~-~~Y~~sK~~~ 150 (312)
T 2yy7_A 80 ---SATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTP-----KENTPQYTIMEPS-TVYGISKQAG 150 (312)
T ss_dssp ---HHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSC-----SSSBCSSCBCCCC-SHHHHHHHHH
T ss_pred ---CCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCC-----CCCccccCcCCCC-chhHHHHHHH
Confidence 2234567888999999999999999999887 6999999999986431 2456677666554 8999999999
Q ss_pred HHHHHhhc-----CceEEeeecccCCCCCCc----hhhH---HHHhccccc-----ccccCCcccHhhHHHHHHHHHhcC
Q 022112 154 EELLKNFE-----NVCTLRVRMPISSDLSNP----RNFI---TKITRYEKV-----VNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 154 E~~~~~~~-----~~~~lR~~~v~g~~~~~~----~~~~---~~~~~~~~~-----~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
|.+++.+. +.+++||+++||+..... ..+. ...+.+... ....++|+|++|+|++++.+++++
T Consensus 151 e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 230 (312)
T 2yy7_A 151 ERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAP 230 (312)
T ss_dssp HHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCc
Confidence 99987653 348899999999653111 1122 222222221 124678999999999999999864
Q ss_pred C-----CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 217 L-----TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 217 ~-----~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
. +++||+++ +.+|+.|+++.+.+.+|.. .+ .+..... ..........+|++|+++.|| +..+++|+|
T Consensus 231 ~~~~~~~~~~ni~~-~~~s~~e~~~~i~~~~~~~-~i-~~~~~~~--~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l- 304 (312)
T 2yy7_A 231 VEKIKIHSSYNLAA-MSFTPTEIANEIKKHIPEF-TI-TYEPDFR--QKIADSWPASIDDSQAREDWDWKHTFDLESMT- 304 (312)
T ss_dssp GGGCCCSSCEECCS-EEECHHHHHHHHHTTCTTC-EE-EECCCTH--HHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHH-
T ss_pred ccccccCceEEeCC-CccCHHHHHHHHHHHCCCC-ce-EeccCcc--ccccccccccCCHHHHHHHcCCCCCCCHHHHH-
Confidence 3 27999997 8999999999999999832 11 1111000 000111134789999999999 334899999
Q ss_pred HHHhhchh
Q 022112 290 KYVFEPNK 297 (302)
Q Consensus 290 ~~~~~~~~ 297 (302)
+++++++|
T Consensus 305 ~~~~~~~k 312 (312)
T 2yy7_A 305 KDMIEHLS 312 (312)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 88888765
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=266.84 Aligned_cols=270 Identities=18% Similarity=0.198 Sum_probs=206.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|+|||||||||||++++++|+++|++|+++ .+|++|.+++.++++..++|+|||+
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 689999999999999999999999998763 3588888889888886679999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
|+.. .......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..++.|+.+..++.+.|+.
T Consensus 81 A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~------~~~~~e~~~~~~~~~~Y~~ 151 (338)
T 1udb_A 81 AGLK---AVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNP------KIPYVESFPTGTPQSPYGK 151 (338)
T ss_dssp CSCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCC------SSSBCTTSCCCCCSSHHHH
T ss_pred CccC---ccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCC------CCCcCcccCCCCCCChHHH
Confidence 9976 23334456778899999999999999998886 599999999998654 4566777766554589999
Q ss_pred hHHHHHHHHHhhc------CceEEeeecccCCCCC---C------chhhHHHHh---c--ccccc-----------cccC
Q 022112 149 TKAMVEELLKNFE------NVCTLRVRMPISSDLS---N------PRNFITKIT---R--YEKVV-----------NIPN 197 (302)
Q Consensus 149 ~K~~~E~~~~~~~------~~~~lR~~~v~g~~~~---~------~~~~~~~~~---~--~~~~~-----------~~~~ 197 (302)
+|..+|.+++.+. ..+++|++++||+... + ...++..+. . +..+. ...+
T Consensus 152 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 231 (338)
T 1udb_A 152 SKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231 (338)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEE
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceee
Confidence 9999999987652 2388999999997421 1 122333322 2 11110 1346
Q ss_pred CcccHhhHHHHHHHHHhcC---CC-CeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchh
Q 022112 198 SMTILDELLPISIEMAKRN---LT-GIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASK 273 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~---~~-~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 273 (302)
+|+|++|+|++++.+++.. .+ ++||+++++.+|+.|+++.+.+.+|.+.+....+. .........+|++|
T Consensus 232 ~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k 305 (338)
T 1udb_A 232 DYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR------REGDLPAYWADASK 305 (338)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC------CTTCCSBCCBCCHH
T ss_pred eeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC------CCCchhhhhcCHHH
Confidence 8999999999999988752 22 59999999999999999999999998754321111 01111245789999
Q ss_pred HHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 274 LKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 274 ~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+++.|| +..+++|+| +++++|++++.
T Consensus 306 ~~~~lG~~p~~~l~~~l-~~~~~w~~~~~ 333 (338)
T 1udb_A 306 ADRELNWRVTRTLDEMA-QDTWHWQSRHP 333 (338)
T ss_dssp HHHHHCCCCCCCHHHHH-HHHHHHHHHCT
T ss_pred HHHHcCCCcCCCHHHHH-HHHHHHHHhcc
Confidence 999999 335999999 88999987764
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=269.63 Aligned_cols=268 Identities=15% Similarity=0.211 Sum_probs=202.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-hhHH-----------------HHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-ASLE-----------------ADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-~~~~-----------------~~~~~~~~d~Vi~~a~~~~ 74 (302)
++|+|||||||||||++|+++|+++|++|+++..+.... ..+. ..+. ++|+|||+|+..
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--~~d~vih~A~~~- 102 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPA- 102 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC--CCSEEEECCSCC-
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhc--CCCEEEECcccc-
Confidence 457999999999999999999999999999865432210 1110 1122 689999999976
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCC-----CCCCCCCCchhhh
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEE-----DTPNFVGSFYSKT 149 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~-----~~~~~~~~~Y~~~ 149 (302)
.......++...+++|+.++.+++++|++.++++|++||.++|+... ..++.|+ ++.. +.+.|+.+
T Consensus 103 --~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~------~~~~~E~~~~~~~~~~-~~~~Y~~s 173 (343)
T 2b69_A 103 --SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPE------VHPQSEDYWGHVNPIG-PRACYDEG 173 (343)
T ss_dssp --SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCS------SSSBCTTCCCBCCSSS-TTHHHHHH
T ss_pred --CchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCC------CCCCcccccccCCCCC-CCCchHHH
Confidence 23334457788999999999999999999988999999999998764 3445555 3333 34789999
Q ss_pred HHHHHHHHHhhc-----CceEEeeecccCCCCCC-----chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHh
Q 022112 150 KAMVEELLKNFE-----NVCTLRVRMPISSDLSN-----PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 150 K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
|..+|.+++.+. ..+++||+++||+.... ...++..++.+..+. ...++|+|++|+|++++.+++
T Consensus 174 K~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~ 253 (343)
T 2b69_A 174 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMN 253 (343)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHh
Confidence 999999986653 34899999999986422 124556666665532 245689999999999999998
Q ss_pred cCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHH
Q 022112 215 RNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYV 292 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~ 292 (302)
.+.+++||+++++.+|+.|+++.+.+.+|.+..+...+... .......+|++|+++.|| +..+|+|+| +++
T Consensus 254 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~------~~~~~~~~d~~k~~~~lG~~p~~~l~e~l-~~~ 326 (343)
T 2b69_A 254 SNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQ------DDPQKRKPDIKKAKLMLGWEPVVPLEEGL-NKA 326 (343)
T ss_dssp SSCCSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCCT------TCCCCCCBCCHHHHHHHCCCCCSCHHHHH-HHH
T ss_pred cCCCCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCCC------CCCceecCCHHHHHHHcCCCCCCCHHHHH-HHH
Confidence 77778999999999999999999999999875533222111 111245789999999999 335899999 888
Q ss_pred hhchhhh
Q 022112 293 FEPNKKT 299 (302)
Q Consensus 293 ~~~~~~~ 299 (302)
+++++++
T Consensus 327 ~~~~~~~ 333 (343)
T 2b69_A 327 IHYFRKE 333 (343)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888765
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=270.36 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=208.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------------ecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------------SGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------------~~dl~~~~~~~~~~~~~~~d 64 (302)
|+|||||||||||++|++.|+++|++|+++ .+|++|.+++.++++..++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999888763 35788888899988876789
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC------eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL------ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+... . +++|+++
T Consensus 109 ~Vih~A~~~---~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~------~-~~~E~~~ 178 (381)
T 1n7h_A 109 EVYNLAAQS---HVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP------P-PQSETTP 178 (381)
T ss_dssp EEEECCSCC---CHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC------S-SBCTTSC
T ss_pred EEEECCccc---CccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCC------C-CCCCCCC
Confidence 999999976 34344567889999999999999999998653 899999999999764 3 6788877
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc------hhhHHHHhcccccc------cccCCccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP------RNFITKITRYEKVV------NIPNSMTI 201 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~~------~~~~~~i~ 201 (302)
..+. +.|+.+|..+|.+++.+.. .+++|+..+||+..... ..++..+..+.... ...++|+|
T Consensus 179 ~~~~-~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~ 257 (381)
T 1n7h_A 179 FHPR-SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGF 257 (381)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEE
T ss_pred CCCC-CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEE
Confidence 6655 8999999999999877642 26789999999864221 12333444443211 24568999
Q ss_pred HhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcc-ccccccccceeeecCCCCCccCchhHHHhCC-
Q 022112 202 LDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW-KNFTLEEQAKVIVAPRSNNELDASKLKTEFP- 279 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg- 279 (302)
++|+|++++.+++++..++||+++++.+|+.|+++.+.+.+|.+... ..+... ...........+|++|+++.||
T Consensus 258 v~Dva~a~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~d~~k~~~~lG~ 334 (381)
T 1n7h_A 258 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQR---YFRPAEVDNLQGDASKAKEVLGW 334 (381)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGG---GSCSSCCCBCCBCCHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCCCCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcc---cCCccccccccCCHHHHHHhcCC
Confidence 99999999999988777899999999999999999999999986321 111100 0011111345789999999999
Q ss_pred -CcchHHHHHHHHHhhchhhh
Q 022112 280 -ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 280 -~~~~~~e~i~~~~~~~~~~~ 299 (302)
+..+|+++| ++++++++++
T Consensus 335 ~p~~~l~e~l-~~~~~~~~~~ 354 (381)
T 1n7h_A 335 KPQVGFEKLV-KMMVDEDLEL 354 (381)
T ss_dssp CCCSCHHHHH-HHHHHHHHHH
T ss_pred cccCCHHHHH-HHHHHHHHhh
Confidence 335999999 8888887654
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=269.93 Aligned_cols=275 Identities=16% Similarity=0.131 Sum_probs=210.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------ecCCCChhhHHHHHhhcCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------SGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------~~dl~~~~~~~~~~~~~~~d 64 (302)
||+|||||||||||++++++|+++|++|+++ .+|++|.+++.++++..++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 5799999999999999999999999988762 35788888899998876799
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|||+|+.. .......++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+++|+++..
T Consensus 81 ~vih~A~~~---~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~------~~~~~E~~~~~ 151 (372)
T 1db3_A 81 EVYNLGAMS---HVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ------EIPQKETTPFY 151 (372)
T ss_dssp EEEECCCCC---TTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC------SSSBCTTSCCC
T ss_pred EEEECCccc---CccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC------CCCCCccCCCC
Confidence 999999976 23344567788899999999999999999875 699999999998654 45678887776
Q ss_pred CCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc------hhhHHHHhcccc-c-c----cccCCcccHh
Q 022112 141 FVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP------RNFITKITRYEK-V-V----NIPNSMTILD 203 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~-~-~----~~~~~~i~v~ 203 (302)
|. +.|+.+|..+|.+++.+. ..+++|+..+||+..... ..++..+..+.. . . ...++|+|++
T Consensus 152 ~~-~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~ 230 (372)
T 1db3_A 152 PR-SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK 230 (372)
T ss_dssp CC-SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHH
Confidence 55 899999999999987653 237899999999854221 123444445542 1 1 3467899999
Q ss_pred hHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccc--cccc---------------------cc-ce-
Q 022112 204 ELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN--FTLE---------------------EQ-AK- 258 (302)
Q Consensus 204 D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~--~~~~---------------------~~-~~- 258 (302)
|+|++++.+++++.+++||+++++.+|+.|+++.+.+.+|.+..+.. .+.. .. ..
T Consensus 231 Dva~a~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (372)
T 1db3_A 231 DYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRY 310 (372)
T ss_dssp HHHHHHHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGG
T ss_pred HHHHHHHHHHhcCCCceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeeccccc
Confidence 99999999998776789999999999999999999999997654221 0000 00 00
Q ss_pred eeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 259 VIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 259 ~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
..........+|++|++++|| +..+++|+| ++++++++++
T Consensus 311 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l-~~~~~~~~~~ 352 (372)
T 1db3_A 311 FRPAEVETLLGDPTKAHEKLGWKPEITLREMV-SEMVANDLEA 352 (372)
T ss_dssp CCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHH-HHHHHHHHHH
T ss_pred cCCCchhhhccCHHHHHHHhCCccccCHHHHH-HHHHHHHHHh
Confidence 000111245689999999999 336999999 8888887654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=270.50 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=207.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHH-hCCCcEEEe-----------------------------------------ecCCCCh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQ-AQSIDFTYG-----------------------------------------SGRLENR 51 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~-~~g~~V~~~-----------------------------------------~~dl~~~ 51 (302)
+|+|||||||||||++|+++|+ ++|++|+++ .+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 3699999999999999999999 999887763 3577788
Q ss_pred hhHHHHHhhcC-CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCC-CCC
Q 022112 52 ASLEADIAAVK-PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGH-PLG 128 (302)
Q Consensus 52 ~~~~~~~~~~~-~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~-~~~ 128 (302)
+++.+++++.+ +|+|||+|+.. ....+..++...+++|+.++.+++++|++.++ ++|++||.++|+..... ...
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~ 158 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFL---AVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVST 158 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----
T ss_pred HHHHHHHHhcCCCCEEEECCCcc---CcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccc
Confidence 88888887666 99999999976 23334567888999999999999999999887 59999999999864310 000
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCC--------CchhhHHHHh--------
Q 022112 129 SGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLS--------NPRNFITKIT-------- 187 (302)
Q Consensus 129 ~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~--------~~~~~~~~~~-------- 187 (302)
+..+++|++++.|. +.|+.+|..+|.+++.+. +.+++||+++||+... ....++..+.
T Consensus 159 ~~~~~~E~~~~~p~-~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 237 (397)
T 1gy8_A 159 NAEPIDINAKKSPE-SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (397)
T ss_dssp CCCCBCTTSCCBCS-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred cccCcCccCCCCCC-CchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHH
Confidence 13567888777554 899999999999987753 3489999999998531 1233444332
Q ss_pred cccc------------c-----------ccccCCcccHhhHHHHHHHHHhcC--CC--------CeEEecCCCccCHHHH
Q 022112 188 RYEK------------V-----------VNIPNSMTILDELLPISIEMAKRN--LT--------GIWNFTNPGVVSHNEI 234 (302)
Q Consensus 188 ~~~~------------~-----------~~~~~~~i~v~D~a~~~~~~~~~~--~~--------~~~~~~~~~~~s~~e~ 234 (302)
.+.. + ....++|+|++|+|++++.+++++ .+ ++||+++++.+|+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~ 317 (397)
T 1gy8_A 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (397)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred hcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCcccHHHH
Confidence 3321 1 123468999999999999998752 22 7999999999999999
Q ss_pred HHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC-Ccc--hHHHHHHHHHhhchhhh
Q 022112 235 LEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-ELL--SIKESLIKYVFEPNKKT 299 (302)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-~~~--~~~e~i~~~~~~~~~~~ 299 (302)
++.+.+.+|.+.++...+. .........+|++|+++.|| .+. +++++| +++++|++++
T Consensus 318 ~~~i~~~~g~~~~~~~~~~------~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l-~~~~~~~~~~ 378 (397)
T 1gy8_A 318 IEVARKTTGHPIPVRECGR------REGDPAYLVAASDKAREVLGWKPKYDTLEAIM-ETSWKFQRTH 378 (397)
T ss_dssp HHHHHHHHCCCCCEEEECC------CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHH-HHHHHHHHTC
T ss_pred HHHHHHHhCCCCCeeeCCC------CCCcccccccCHHHHHHHhCCCCCcCCHHHHH-HHHHHHHHhc
Confidence 9999999998755322111 01111245789999999999 333 899999 8989888765
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=267.70 Aligned_cols=267 Identities=10% Similarity=0.154 Sum_probs=206.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEEee-----------------cCCCChhhHHHHHhhc---CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGS-----------------GRLENRASLEADIAAV---KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~-----------------~dl~~~~~~~~~~~~~---~~d~Vi~~a~~ 72 (302)
+|+|||||||||||++|+++|+++| ++|+++. +|+++.+.+..+++.. ++|+|||+|+.
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~ 125 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC 125 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCcc
Confidence 3789999999999999999999999 9998843 3455666677776631 59999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
.. . ...++...+++|+.++.+++++|++.++++|++||.++|+... ..+++|+++..|. +.|+.+|..
T Consensus 126 ~~---~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~------~~~~~E~~~~~p~-~~Y~~sK~~ 193 (357)
T 2x6t_A 126 SS---T--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRT------SDFIESREYEKPL-NVFGYSKFL 193 (357)
T ss_dssp CC---T--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCS------SCCCSSGGGCCCS-SHHHHHHHH
T ss_pred cC---C--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCC------CCCcCCcCCCCCC-ChhHHHHHH
Confidence 62 2 3457788999999999999999999888999999999998654 4467888777655 899999999
Q ss_pred HHHHHHhhc-----CceEEeeecccCCCCCCc-------hhhHHHHhcccccc-----cc-cCCcccHhhHHHHHHHHHh
Q 022112 153 VEELLKNFE-----NVCTLRVRMPISSDLSNP-------RNFITKITRYEKVV-----NI-PNSMTILDELLPISIEMAK 214 (302)
Q Consensus 153 ~E~~~~~~~-----~~~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~-----~~-~~~~i~v~D~a~~~~~~~~ 214 (302)
+|.+++.+. +.+++||+++||+..... ..++..+..+..+. .. .++|+|++|+|++++.+++
T Consensus 194 ~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~ 273 (357)
T 2x6t_A 194 FDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLE 273 (357)
T ss_dssp HHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHh
Confidence 999998764 458999999999865321 23445555555421 24 6789999999999999998
Q ss_pred cCCCCeEEecCCCccCHHHHHHHHHhhcCCC-CccccccccccceeeecC-CCCCccCchhHHHhCCC---cchHHHHHH
Q 022112 215 RNLTGIWNFTNPGVVSHNEILEMYRQYIDPN-FTWKNFTLEEQAKVIVAP-RSNNELDASKLKTEFPE---LLSIKESLI 289 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-~~~~~~d~~k~~~~lg~---~~~~~e~i~ 289 (302)
++.+++||+++++.+|+.|+++.+.+.+|.+ +...+.+. . .... .....+|++|+++ ||+ .++|+|+|
T Consensus 274 ~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~--~---~~~~~~~~~~~~~~k~~~-lG~~~~~~~l~e~l- 346 (357)
T 2x6t_A 274 NGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPD--K---LKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGV- 346 (357)
T ss_dssp HCCCEEEEESCSCCEEHHHHHHHHHHHHTCCCCEEECCCG--G---GTTSCCSBCCCCCHHHHH-TTCCCCCCCHHHHH-
T ss_pred cCCCCeEEecCCCcccHHHHHHHHHHHcCCCCceecCCCc--c---cccccccccccCHHHHHH-cCCCCCCCCHHHHH-
Confidence 7667799999999999999999999999987 33222211 1 0011 1245789999987 784 46999999
Q ss_pred HHHhhchhhh
Q 022112 290 KYVFEPNKKT 299 (302)
Q Consensus 290 ~~~~~~~~~~ 299 (302)
++++++++++
T Consensus 347 ~~~~~~~~~~ 356 (357)
T 2x6t_A 347 TEYMAWLNRD 356 (357)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHhhc
Confidence 9999988764
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=267.39 Aligned_cols=278 Identities=16% Similarity=0.140 Sum_probs=210.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
||||||||+||||++|+++|+++ |++|++ +.+|++|.+++.+++++.++|+|||+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 68999999999999999999998 788776 34688899999999887789999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--CC--------eEEEEcCCccccCCCCC----CCCCCCCCCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--GL--------ILINYATGCIFEYDSGH----PLGSGIGFKE 135 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~--------~~v~~SS~~vy~~~~~~----~~~~~~~~~e 135 (302)
|+.. ....+..++...+++|+.++.+++++|++. ++ ++|++||.++|+..... ...+..+++|
T Consensus 81 A~~~---~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E 157 (361)
T 1kew_A 81 AAES---HVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp CSCC---CHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred CCCc---ChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCC
Confidence 9976 333455678889999999999999999987 64 79999999999864310 0000126788
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhhHHHHhcccccc-----cccCCcccH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNFITKITRYEKVV-----NIPNSMTIL 202 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~-----~~~~~~i~v 202 (302)
+++..+. +.|+.+|..+|.+++.+. +.+++||+++||+..... ..++..+..+.... ...++|+|+
T Consensus 158 ~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 236 (361)
T 1kew_A 158 TTAYAPS-SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236 (361)
T ss_dssp TSCCCCC-SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEH
T ss_pred CCCCCCC-CccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEcCCCceeEeeEEH
Confidence 8766544 899999999999987753 348999999999865321 23455555554422 135689999
Q ss_pred hhHHHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCC----CCCccCchhHHHh
Q 022112 203 DELLPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPR----SNNELDASKLKTE 277 (302)
Q Consensus 203 ~D~a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~d~~k~~~~ 277 (302)
+|+|++++.+++++. +++||+++++.+|+.|+++.+.+.+|.+..... +... .......+ ....+|++|++++
T Consensus 237 ~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~-p~~~-~~~~~~~~~~~~~~~~~d~~k~~~~ 314 (361)
T 1kew_A 237 EDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKAT-SYRE-QITYVADRPGHDRRYAIDAGKISRE 314 (361)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSS-CGGG-GEEEECCCTTCCCBCCBCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCcccc-cccc-ceeecCCCCcccceeecCHHHHHHH
Confidence 999999999998754 459999999999999999999999986532111 0000 00111111 2347899999999
Q ss_pred CC--CcchHHHHHHHHHhhchhhh
Q 022112 278 FP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 278 lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
|| +..+++++| ++++++++++
T Consensus 315 lG~~p~~~~~e~l-~~~~~~~~~~ 337 (361)
T 1kew_A 315 LGWKPLETFESGI-RKTVEWYLAN 337 (361)
T ss_dssp HCCCCSCCHHHHH-HHHHHHHHHC
T ss_pred hCCCCccCHHHHH-HHHHHHHHhc
Confidence 99 335899999 8888888654
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=262.48 Aligned_cols=266 Identities=11% Similarity=0.162 Sum_probs=194.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhCC-CcEEEee-----------------cCCCChhhHHHHHhhc---CCCEEEEccccCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQS-IDFTYGS-----------------GRLENRASLEADIAAV---KPTHVFNAAGVTG 74 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~-----------------~dl~~~~~~~~~~~~~---~~d~Vi~~a~~~~ 74 (302)
+|||||||||||++|+++|+++| ++|+++. +|+++.+.+..+++.. ++|+|||+|+...
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~~ 80 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSS 80 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECccccc
Confidence 58999999999999999999999 9998843 4555666677777631 5999999999762
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
. ...++...+++|+.++.+++++|++.++++|++||.++|+... ..+++|+++..|. +.|+.+|..+|
T Consensus 81 ---~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~------~~~~~E~~~~~p~-~~Y~~sK~~~e 148 (310)
T 1eq2_A 81 ---T--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRT------SDFIESREYEKPL-NVYGYSKFLFD 148 (310)
T ss_dssp ---T--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCC------SCBCSSGGGCCCS-SHHHHHHHHHH
T ss_pred ---C--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCC------CCCCCCCCCCCCC-ChhHHHHHHHH
Confidence 2 4457788999999999999999999888999999999998654 3467788777655 89999999999
Q ss_pred HHHHhhc-----CceEEeeecccCCCCCC-------chhhHHHHhcccccc-----cc-cCCcccHhhHHHHHHHHHhcC
Q 022112 155 ELLKNFE-----NVCTLRVRMPISSDLSN-------PRNFITKITRYEKVV-----NI-PNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 155 ~~~~~~~-----~~~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~~~-----~~-~~~~i~v~D~a~~~~~~~~~~ 216 (302)
.+++.+. +.+++||+++||+.... ...++..+..+..+. .. .++|+|++|+|++++.+++++
T Consensus 149 ~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~ 228 (310)
T 1eq2_A 149 EYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG 228 (310)
T ss_dssp HHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcC
Confidence 9998764 45999999999986421 123455555555421 24 779999999999999999876
Q ss_pred CCCeEEecCCCccCHHHHHHHHHhhcCCC-CccccccccccceeeecCCCCCccCchhHHHhCCC---cchHHHHHHHHH
Q 022112 217 LTGIWNFTNPGVVSHNEILEMYRQYIDPN-FTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPE---LLSIKESLIKYV 292 (302)
Q Consensus 217 ~~~~~~~~~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~---~~~~~e~i~~~~ 292 (302)
.+++||+++++.+|+.|+++.+.+.+|.+ +...+.+ .. ..........+|++|+++ ||+ .++|+++| +++
T Consensus 229 ~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~-lG~~~~~~~l~~~l-~~~ 302 (310)
T 1eq2_A 229 VSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFP--DK--LKGRYQAFTQADLTNLRA-AGYDKPFKTVAEGV-TEY 302 (310)
T ss_dssp CCEEEEESCSCCBCHHHHHHHC-------------------------CCCSCCBCCHHHHH-TTCCCCCCCHHHHH-HHH
T ss_pred CCCeEEEeCCCccCHHHHHHHHHHHcCCCCceeCCCC--hh--hhcccccccccchHHHHh-cCCCCCCCCHHHHH-HHH
Confidence 67799999999999999999999999987 3222211 10 000111245789999987 784 46999999 999
Q ss_pred hhchhhh
Q 022112 293 FEPNKKT 299 (302)
Q Consensus 293 ~~~~~~~ 299 (302)
+++++++
T Consensus 303 ~~~~~~~ 309 (310)
T 1eq2_A 303 MAWLNRD 309 (310)
T ss_dssp HHHTC--
T ss_pred HHHHHhc
Confidence 9998764
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=268.61 Aligned_cols=269 Identities=13% Similarity=0.098 Sum_probs=201.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------------------------ecCCCCh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------------------------SGRLENR 51 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------------------------~~dl~~~ 51 (302)
.+|+|||||||||||++|+++|+++|++|+++ .+|++|.
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d~ 89 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 89 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCCH
Confidence 56799999999999999999999999998864 3578888
Q ss_pred hhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH---HHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCC
Q 022112 52 ASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK---VETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHP 126 (302)
Q Consensus 52 ~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~---~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~ 126 (302)
+++.++++..++|+|||+|+.. .......++ ...+++|+.++.+++++|++.++ ++|++||.++|+...
T Consensus 90 ~~~~~~~~~~~~D~Vih~A~~~---~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~--- 163 (404)
T 1i24_A 90 EFLAESFKSFEPDSVVHFGEQR---SAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN--- 163 (404)
T ss_dssp HHHHHHHHHHCCSEEEECCSCC---CHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---
T ss_pred HHHHHHHhccCCCEEEECCCCC---CccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC---
Confidence 8899999866699999999976 232222333 35789999999999999999874 799999999998652
Q ss_pred CCCCCCCCCC--------------CCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC---------
Q 022112 127 LGSGIGFKEE--------------DTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN--------- 178 (302)
Q Consensus 127 ~~~~~~~~e~--------------~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~--------- 178 (302)
.++.|+ .+.. +.+.|+.+|..+|.+++.+. ...++||+++||+....
T Consensus 164 ----~~~~E~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~ 238 (404)
T 1i24_A 164 ----IDIEEGYITITHNGRTDTLPYPKQ-ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRN 238 (404)
T ss_dssp ----SCBCSSEEEEEETTEEEEEECCCC-CCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCC
T ss_pred ----CCCCccccccccccccccccCCCC-CCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCcccccccccc
Confidence 234554 2333 44899999999999987653 34899999999986421
Q ss_pred -----------chhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcCC--C--CeEEecCCCccCHHHHHHHH
Q 022112 179 -----------PRNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRNL--T--GIWNFTNPGVVSHNEILEMY 238 (302)
Q Consensus 179 -----------~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~--~--~~~~~~~~~~~s~~e~~~~~ 238 (302)
...++..+..+..+. ...++|+|++|+|++++.+++++. + ++||+++ +.+|+.|+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~-~~~s~~e~~~~i 317 (404)
T 1i24_A 239 RLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT-EQFSVNELASLV 317 (404)
T ss_dssp CCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECS-EEEEHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECC-CCCcHHHHHHHH
Confidence 124566666665532 245789999999999999998753 3 4999998 899999999999
Q ss_pred Hhh---cCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 239 RQY---IDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 239 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
.+. +|.+......+.... ........+|++|++ .|| +..++++++ +.++++++..
T Consensus 318 ~~~~~~~g~~~~~~~~p~~~~----~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l-~~~~~~~~~~ 377 (404)
T 1i24_A 318 TKAGSKLGLDVKKMTVPNPRV----EAEEHYYNAKHTKLM-ELGLEPHYLSDSLL-DSLLNFAVQF 377 (404)
T ss_dssp HHHHHTTTCCCCEEEECCSSC----SCSSCCCCBCCCHHH-HTTCCCCCCCHHHH-HHHHHHHHHT
T ss_pred HHHHHhhCCCccccccCcccC----ccccceEecCHHHHH-HcCCCcCcCHHHHH-HHHHHHHHhh
Confidence 998 777654322211100 001123468999998 689 445889999 8888887543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-36 Score=259.68 Aligned_cols=265 Identities=18% Similarity=0.223 Sum_probs=203.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
..|+||||||+||||++|+++|+++|++|++ +.+|++|.+++.+++++.++|+|||+|+.
T Consensus 19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~ 98 (330)
T 2pzm_A 19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAA 98 (330)
T ss_dssp TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 4579999999999999999999999999886 34688888899998887789999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
.. .. +..++. +++|+.++.+++++|++.++ ++|++||.++|+..... +.+++|++ . +.+.|+.+|.
T Consensus 99 ~~---~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~----~~~~~E~~--~-~~~~Y~~sK~ 165 (330)
T 2pzm_A 99 YK---DP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATV----PIPIDSPT--A-PFTSYGISKT 165 (330)
T ss_dssp CS---CT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSS----SBCTTCCC--C-CCSHHHHHHH
T ss_pred CC---Cc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccC----CCCcCCCC--C-CCChHHHHHH
Confidence 63 21 333444 89999999999999999887 69999999999864311 11667776 3 3489999999
Q ss_pred HHHHHHHhh-cCceEEeeecccCCCCCC--chhhHHHHhcccccc-cc-cCCcccHhhHHH-HHHHHHhcCCCCeEEecC
Q 022112 152 MVEELLKNF-ENVCTLRVRMPISSDLSN--PRNFITKITRYEKVV-NI-PNSMTILDELLP-ISIEMAKRNLTGIWNFTN 225 (302)
Q Consensus 152 ~~E~~~~~~-~~~~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~-~~-~~~~i~v~D~a~-~~~~~~~~~~~~~~~~~~ 225 (302)
.+|.+++.+ ...+++||+++||++... ...++..+..+.... .. .++++|++|+|+ +++.+++++.+++||+++
T Consensus 166 ~~e~~~~~~~~~~~~iR~~~v~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~a~~~~~~~~~g~~~~v~~ 245 (330)
T 2pzm_A 166 AGEAFLMMSDVPVVSLRLANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQEGRPTGVFNVST 245 (330)
T ss_dssp HHHHHHHTCSSCEEEEEECEEECTTCCSSHHHHHHHHHHTTCCCCEESCEECEEEHHHHHHHHHHHTSTTCCCEEEEESC
T ss_pred HHHHHHHHcCCCEEEEeeeeeECcCCCCCHHHHHHHHHHcCCEEeCCCCEecceeHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 999999886 345899999999986411 122344444443211 11 578999999999 999998865467999999
Q ss_pred CCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhH-----HHhCC--CcchHHHHHHHHHhhchhh
Q 022112 226 PGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKL-----KTEFP--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 226 ~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~-----~~~lg--~~~~~~e~i~~~~~~~~~~ 298 (302)
++.+|+.|+++.+.+.+|.+ .+...+.. . ......+|++|+ ++ || +..+|+++| +++++++++
T Consensus 246 ~~~~s~~e~~~~i~~~~g~~-~~~~~~~~------~-~~~~~~~d~~k~~~~~l~~-lG~~p~~~~~~~l-~~~~~~~~~ 315 (330)
T 2pzm_A 246 GEGHSIKEVFDVVLDYVGAT-LAEPVPVV------A-PGADDVPSVVLDPSKTETE-FGWKAKVDFKDTI-TGQLAWYDK 315 (330)
T ss_dssp SCCEEHHHHHHHHHHHHTCC-CSSCCCEE------C-CCTTSCSEECBCCHHHHHH-HCCCCCCCHHHHH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-CceeCCCC------c-chhhccCCHHHHhhchHHH-cCCcccCCHHHHH-HHHHHHHHh
Confidence 99999999999999999987 32221111 1 123456788888 78 89 346999999 999998876
Q ss_pred hc
Q 022112 299 TT 300 (302)
Q Consensus 299 ~~ 300 (302)
+.
T Consensus 316 ~~ 317 (330)
T 2pzm_A 316 YG 317 (330)
T ss_dssp HC
T ss_pred hC
Confidence 53
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=257.36 Aligned_cols=270 Identities=13% Similarity=0.103 Sum_probs=194.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----hhHHHHHhhcCCCEEEEccccCC-CCCcchhhhhHHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----ASLEADIAAVKPTHVFNAAGVTG-RPNVDWCESHKVET 88 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----~~~~~~~~~~~~d~Vi~~a~~~~-~~~~~~~~~~~~~~ 88 (302)
|||||||||||||++|+++|+++||+|+++.++.... +...+.++ ++|+|||+|+... .+...+.......+
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~--~~d~vihla~~~i~~~~~~~~~~~~~~~ 78 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLP--SCDAAVNLAGENILNPLRRWNETFQKEV 78 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCC--SCSEEEECCCCCSSCTTSCCCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhcc--CCCEEEEeccCcccchhhhhhhhhhhhh
Confidence 7999999999999999999999999999987653321 11223344 8999999998541 01112345566788
Q ss_pred HHHhHHHHHHHHHHHHHhCCe---EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh---cC
Q 022112 89 IRTNVVGTLTLADVCRDKGLI---LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF---EN 162 (302)
Q Consensus 89 ~~~n~~~~~~ll~~~~~~~~~---~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~---~~ 162 (302)
.+.|+.++.+++++++..+.+ +|+.||.++|+... +.++.|+++..+. +.|+..+...|...... ..
T Consensus 79 ~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~------~~~~~E~~p~~~~-~~~~~~~~~~e~~~~~~~~~~~ 151 (298)
T 4b4o_A 79 LGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSL------TAEYDEDSPGGDF-DFFSNLVTKWEAAARLPGDSTR 151 (298)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCS------SCCBCTTCCCSCS-SHHHHHHHHHHHHHCCSSSSSE
T ss_pred hhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCC------CCcccccCCcccc-chhHHHHHHHHHHHHhhccCCc
Confidence 999999999999999987653 78889999999776 5667888777655 77888888777654322 22
Q ss_pred ceEEeeecccCCCCCCchhhHHHHhccccc----ccccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHH
Q 022112 163 VCTLRVRMPISSDLSNPRNFITKITRYEKV----VNIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEM 237 (302)
Q Consensus 163 ~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~ 237 (302)
.+++|++.+||++......++.....+... ..+.++|+|++|+|++++.+++++ ..|+||+++++++|++|+++.
T Consensus 152 ~~~~r~~~v~g~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ 231 (298)
T 4b4o_A 152 QVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQT 231 (298)
T ss_dssp EEEEEECEEECTTSHHHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCEEEEESCSCCCBHHHHHHH
T ss_pred eeeeeeeeEEcCCCCchhHHHHHHhcCCcceecccCceeecCcHHHHHHHHHHHHhCCCCCCeEEEECCCccCHHHHHHH
Confidence 388999999998532122333333333321 236789999999999999999875 568999999999999999999
Q ss_pred HHhhcCCCCccccccccccc----eeeec-CCCCCccCchhHHHhCC---CcchHHHHHHHHHhhch
Q 022112 238 YRQYIDPNFTWKNFTLEEQA----KVIVA-PRSNNELDASKLKTEFP---ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 238 ~~~~~g~~~~~~~~~~~~~~----~~~~~-~~~~~~~d~~k~~~~lg---~~~~~~e~i~~~~~~~~ 296 (302)
+++.+|++... +++..... ..... -..+.+++++|+++ +| .+|+++++| +++++.+
T Consensus 232 ia~~lgrp~~~-pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~-~Gf~f~yp~l~~al-~~l~~~l 295 (298)
T 4b4o_A 232 FGAALGRRAFI-PLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLA-TGYQYSFPELGAAL-KEIAENL 295 (298)
T ss_dssp HHHHHTCCCCC-CBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHH-TTCCCSCCSHHHHH-HHHHHCC
T ss_pred HHHHhCcCCcc-cCCHHHHHHHhcchhHHHhhCCCEEcHHHHHH-CCCCCCCCCHHHHH-HHHHHhh
Confidence 99999987432 22211000 00000 00245688999976 67 568999999 9888754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=252.27 Aligned_cols=256 Identities=20% Similarity=0.236 Sum_probs=200.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe----------ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----------SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESH 84 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~----------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~ 84 (302)
|+|||||||||||++++++|++ |++|+++ .+|++|++++.++++..++|+|||+|+.. .......+
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~---~~~~~~~~ 76 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMT---DVDKCEIE 76 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCTTCEECCTTSHHHHHHHHHHHCCSEEEECCCCC---CHHHHHHC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCCCCceeccCCHHHHHHHHHhcCCCEEEECCccc---ChhhhhhC
Confidence 5899999999999999999995 8999883 47999999999999866799999999976 34444568
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCce
Q 022112 85 KVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVC 164 (302)
Q Consensus 85 ~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~~ 164 (302)
+...+++|+.++.+++++|++.++++|++||..+|+.. ..++.|++++.+. +.|+.+|..+|.+++. .+..
T Consensus 77 ~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~-------~~~~~e~~~~~~~-~~Y~~sK~~~e~~~~~-~~~~ 147 (273)
T 2ggs_A 77 KEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGE-------KGNYKEEDIPNPI-NYYGLSKLLGETFALQ-DDSL 147 (273)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSS-------SCSBCTTSCCCCS-SHHHHHHHHHHHHHCC-TTCE
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCC-------CCCcCCCCCCCCC-CHHHHHHHHHHHHHhC-CCeE
Confidence 88999999999999999999988899999999999865 2367888777655 8999999999999987 6779
Q ss_pred EEeeecccCCCCCCchhhHHHHhccccccc--ccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhc
Q 022112 165 TLRVRMPISSDLSNPRNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 165 ~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
++|++.+||... ....++..+..+..... ..++++|++|+|++++.+++++..|+||+++ +.+|+.|+++.+.+.+
T Consensus 148 ~iR~~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~~~~~~~~g~~~i~~-~~~s~~e~~~~~~~~~ 225 (273)
T 2ggs_A 148 IIRTSGIFRNKG-FPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAG-ERISRFELALKIKEKF 225 (273)
T ss_dssp EEEECCCBSSSS-HHHHHHHHHHTTCCEEEESCEECCCBHHHHHHHHHHHHHHTCCEEEECCC-CCEEHHHHHHHHHHHT
T ss_pred EEeccccccccH-HHHHHHHHHHcCCCEEeecCCCCceEHHHHHHHHHHHHhcCcCCeEEECC-CcccHHHHHHHHHHHh
Confidence 999999997211 11223344444443211 1568999999999999999887778999999 9999999999999999
Q ss_pred CCCCccccccccccceeeecCC-CCCccCchhHHHhCCCc---chHHHHH
Q 022112 243 DPNFTWKNFTLEEQAKVIVAPR-SNNELDASKLKTEFPEL---LSIKESL 288 (302)
Q Consensus 243 g~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~~lg~~---~~~~e~i 288 (302)
|.+..+.... ... .....+ ....+|++|+++.|||. .+++++|
T Consensus 226 g~~~~~~~~~-~~~--~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 226 NLPGEVKEVD-EVR--GWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp TCCSCEEEES-SCT--TCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred CCChhhcccc-ccc--ccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 9886532110 000 111112 34679999999999933 3666654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=255.04 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=186.3
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.|||||||||| ||||++|+++|+++|++|++ +.+|++|.+ +. ++|+|||+|+..
T Consensus 3 ~m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-----~~--~~d~vi~~a~~~ 74 (286)
T 3ius_A 3 AMTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-----LD--GVTHLLISTAPD 74 (286)
T ss_dssp --CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-----CT--TCCEEEECCCCB
T ss_pred CCcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-----cC--CCCEEEECCCcc
Confidence 36789999998 99999999999999999988 345555533 44 799999999976
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH--hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRD--KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~--~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
. .. + ..+.+++++|++ .++ ++|++||.++|+... +.+++|+++..|. +.|+.+|
T Consensus 75 ~---~~----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~------~~~~~E~~~~~p~-~~Y~~sK 131 (286)
T 3ius_A 75 S---GG----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHD------GAWVDETTPLTPT-AARGRWR 131 (286)
T ss_dssp T---TB----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCT------TCEECTTSCCCCC-SHHHHHH
T ss_pred c---cc----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCC------CCCcCCCCCCCCC-CHHHHHH
Confidence 2 11 1 124678899988 565 599999999999765 5577888888766 8999999
Q ss_pred HHHHHHHHhh--cCceEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHHHhcCCC-CeEEe
Q 022112 151 AMVEELLKNF--ENVCTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEMAKRNLT-GIWNF 223 (302)
Q Consensus 151 ~~~E~~~~~~--~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~ 223 (302)
..+|++++.+ .+.+++||+++||+.... +..+..+.... ...++|+|++|+|++++.+++++.. ++||+
T Consensus 132 ~~~E~~~~~~~~~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~i 207 (286)
T 3ius_A 132 VMAEQQWQAVPNLPLHVFRLAGIYGPGRGP----FSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAASMARPDPGAVYNV 207 (286)
T ss_dssp HHHHHHHHHSTTCCEEEEEECEEEBTTBSS----STTSSSSCCCEEECTTCCBCEEEHHHHHHHHHHHHHSCCTTCEEEE
T ss_pred HHHHHHHHhhcCCCEEEEeccceECCCchH----HHHHhcCCccccCCCCcccceEEHHHHHHHHHHHHhCCCCCCEEEE
Confidence 9999999876 455999999999985322 33344444321 3577999999999999999988654 59999
Q ss_pred cCCCccCHHHHHHHHHhhcCCCCccccccccccceee--e-cCCCCCccCchhHHHhCC--Ccc-hHHHHHHHHHhhchh
Q 022112 224 TNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVI--V-APRSNNELDASKLKTEFP--ELL-SIKESLIKYVFEPNK 297 (302)
Q Consensus 224 ~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~--~-~~~~~~~~d~~k~~~~lg--~~~-~~~e~i~~~~~~~~~ 297 (302)
++++.+|+.|+++.+.+.+|.+.... +......... . .......+|++|+++.|| +.. +|+|+| +++++..+
T Consensus 208 ~~~~~~s~~e~~~~i~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l-~~~~~~~~ 285 (286)
T 3ius_A 208 CDDEPVPPQDVIAYAAELQGLPLPPA-VDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGL-EALQADAE 285 (286)
T ss_dssp CCSCCBCHHHHHHHHHHHHTCCCCCE-EEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHH-HHHHHTCC
T ss_pred eCCCCccHHHHHHHHHHHcCCCCCcc-cchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHH-HHHHHhcc
Confidence 99999999999999999999875421 1111110000 0 001345799999999999 333 799999 88877653
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=253.27 Aligned_cols=270 Identities=15% Similarity=0.159 Sum_probs=202.3
Q ss_pred EEEEEcCCcchHHHHHHHHHhC--CCcEEE-------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcch
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQ--SIDFTY-------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~--g~~V~~-------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~ 80 (302)
||||||||||||++|+++|+++ |++|++ +.+|++|.+++.++++..++|+|||+|+.. ...
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~----~~~ 76 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGIL----SAK 76 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCC----HHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCccc----CCc
Confidence 5999999999999999999998 889887 347899999999999877899999999975 223
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHh
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
...++...+++|+.++.+++++|++.++ ++|++||.++|+.... ..+..|+.+..|. +.|+.+|..+|.+++.
T Consensus 77 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-----~~~~~e~~~~~p~-~~Y~~sK~~~e~~~~~ 150 (317)
T 3ajr_A 77 GEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETP-----KNKVPSITITRPR-TMFGVTKIAAELLGQY 150 (317)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSC-----SSSBCSSSCCCCC-SHHHHHHHHHHHHHHH
T ss_pred cccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCC-----CCCccccccCCCC-chHHHHHHHHHHHHHH
Confidence 3467788999999999999999999887 5999999999986431 3355666666554 8999999999999876
Q ss_pred hc-----CceEEeeecccCCCCCC---chh-h---HHHHhccccc-----ccccCCcccHhhHHHHHHHHHhcCC-----
Q 022112 160 FE-----NVCTLRVRMPISSDLSN---PRN-F---ITKITRYEKV-----VNIPNSMTILDELLPISIEMAKRNL----- 217 (302)
Q Consensus 160 ~~-----~~~~lR~~~v~g~~~~~---~~~-~---~~~~~~~~~~-----~~~~~~~i~v~D~a~~~~~~~~~~~----- 217 (302)
+. +.+++|++.+||+.... ... + +...+.+... ....++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~ 230 (317)
T 3ajr_A 151 YYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVL 230 (317)
T ss_dssp HHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSS
T ss_pred HHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCcccccc
Confidence 53 33889999999975311 111 1 2222332221 1346789999999999999998642
Q ss_pred CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhc
Q 022112 218 TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEP 295 (302)
Q Consensus 218 ~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~ 295 (302)
+++||+++ ..+|+.|+++.+.+.+|.. .+ .+... .. ..........+|++|+++.|| +..+++++| ++++++
T Consensus 231 g~~~~i~~-~~~s~~e~~~~i~~~~~~~-~i-~~~~~-~~-~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l-~~~~~~ 304 (317)
T 3ajr_A 231 RNGYNVTA-YTFTPSELYSKIKERIPEF-EI-EYKED-FR-DKIAATWPESLDSSEASNEWGFSIEYDLDRTI-DDMIDH 304 (317)
T ss_dssp CSCEECCS-EEECHHHHHHHHHTTCCSC-CE-EECCC-HH-HHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHH-HHHHHH
T ss_pred CceEecCC-ccccHHHHHHHHHHHCCcc-cc-ccccc-cc-hhhccccccccCHHHHHHHcCCCCCCCHHHHH-HHHHHH
Confidence 37999997 6899999999999998832 11 11110 00 000111134689999999999 334999999 999998
Q ss_pred hhhhcC
Q 022112 296 NKKTTG 301 (302)
Q Consensus 296 ~~~~~~ 301 (302)
++++.+
T Consensus 305 ~~~~~~ 310 (317)
T 3ajr_A 305 ISEKLG 310 (317)
T ss_dssp HHHHTT
T ss_pred HHhhhc
Confidence 877653
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=254.55 Aligned_cols=270 Identities=16% Similarity=0.128 Sum_probs=201.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-------CcEEE------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-------IDFTY------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-------~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
++|+||||||+||||++|+++|+++| ++|++ +.+|++|.+++.++++ .++|+||
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vi 91 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVIF 91 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEEE
Confidence 56799999999999999999999999 77765 4578889888888884 2899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-----C-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-----L-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+|+.. ...+..++...+++|+.++.+++++|++.+ + ++|++||.++|+... ..+++|++++.+
T Consensus 92 h~A~~~----~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~------~~~~~E~~~~~~ 161 (342)
T 2hrz_A 92 HLAAIV----SGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPL------PYPIPDEFHTTP 161 (342)
T ss_dssp ECCCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSC------CSSBCTTCCCCC
T ss_pred ECCccC----cccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCC------CCCcCCCCCCCC
Confidence 999976 223456788899999999999999999875 4 699999999998654 456788887765
Q ss_pred CCCchhhhHHHHHHHHHhhcC-----ceEEeeecccC-CCCCC--chhh----HHHHhcccccc-----cccCCcccHhh
Q 022112 142 VGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPIS-SDLSN--PRNF----ITKITRYEKVV-----NIPNSMTILDE 204 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g-~~~~~--~~~~----~~~~~~~~~~~-----~~~~~~i~v~D 204 (302)
. +.|+.+|..+|.+++.+.. ..++|++.+|| +.... ...+ +..++.+.... ....+++|++|
T Consensus 162 ~-~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D 240 (342)
T 2hrz_A 162 L-TSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRS 240 (342)
T ss_dssp S-SHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHH
T ss_pred c-chHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHH
Confidence 5 8999999999999877642 37899999998 43311 1223 44444554321 12345899999
Q ss_pred HHHHHHHHHhcC-----CCCeEEecCCCccCHHHHHHHHHhhcCCCCc-cccccccccceeeecCCCCCccCchhHHHhC
Q 022112 205 LLPISIEMAKRN-----LTGIWNFTNPGVVSHNEILEMYRQYIDPNFT-WKNFTLEEQAKVIVAPRSNNELDASKLKTEF 278 (302)
Q Consensus 205 ~a~~~~~~~~~~-----~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 278 (302)
+|++++.+++.+ .+++||++ ++.+|+.|+++.+.+.+|.+.. ...+........ ........+|++|+++ |
T Consensus 241 va~~~~~~~~~~~~~~~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~-l 317 (342)
T 2hrz_A 241 AVGFLIHGAMIDVEKVGPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMR-MCEGWAPGFEAKRARE-L 317 (342)
T ss_dssp HHHHHHHHHHSCHHHHCSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHH-HHTTSCCCBCCHHHHH-T
T ss_pred HHHHHHHHHhccccccCCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhh-hhcccccccChHHHHH-c
Confidence 999999999864 35799996 4789999999999999986531 111110000000 0011123689999999 9
Q ss_pred C--CcchHHHHHHHHHhhchhh
Q 022112 279 P--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 279 g--~~~~~~e~i~~~~~~~~~~ 298 (302)
| +..+++|+| ++++++++.
T Consensus 318 G~~p~~~l~e~l-~~~~~~~~~ 338 (342)
T 2hrz_A 318 GFTAESSFEEII-QVHIEDELG 338 (342)
T ss_dssp TCCCCSSHHHHH-HHHHHHHST
T ss_pred CCCCCCCHHHHH-HHHHHHhcC
Confidence 9 336999999 888888874
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=272.32 Aligned_cols=277 Identities=14% Similarity=0.138 Sum_probs=209.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEE-------------------eecCCCChhh-HHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY-------------------GSGRLENRAS-LEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~-------------------~~~dl~~~~~-~~~~~~~~~~d~Vi~~a~ 71 (302)
++|+|||||||||||++|+++|+++ |++|++ +.+|+++.++ +.++++ ++|+|||+|+
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~--~~D~Vih~Aa 391 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVA 391 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHH--HCSEEEECCC
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhc--CCCEEEECce
Confidence 4679999999999999999999998 888877 3567887664 677777 8999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC------CCCCCc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP------NFVGSF 145 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~------~~~~~~ 145 (302)
.. .......++...+++|+.++.+++++|++.+.++|++||.++|+... ..+++|+++. ..+.+.
T Consensus 392 ~~---~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~------~~~~~E~~~~~~~~p~~~p~~~ 462 (660)
T 1z7e_A 392 IA---TPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCS------DKYFDEDHSNLIVGPVNKPRWI 462 (660)
T ss_dssp CC---CTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCC------SSSBCTTTCCEEECCTTCTTHH
T ss_pred ec---CccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCC------CcccCCCccccccCcccCCCCC
Confidence 76 23344567888999999999999999999886799999999998764 4456666542 123368
Q ss_pred hhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-----------chhhHHHHhcccccc-----cccCCcccHhh
Q 022112 146 YSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-----------PRNFITKITRYEKVV-----NIPNSMTILDE 204 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~~i~v~D 204 (302)
|+.+|..+|.+++.+. +.+++||+++||+.... ...++..+..+.++. ...++|+|++|
T Consensus 463 Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~D 542 (660)
T 1z7e_A 463 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD 542 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHH
Confidence 9999999999987653 34999999999986522 123555666665431 24568999999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCC-ccCHHHHHHHHHhhcCCCCccccccccccce-----e----eecCCCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPG-VVSHNEILEMYRQYIDPNFTWKNFTLEEQAK-----V----IVAPRSNNELD 270 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~-~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~-----~----~~~~~~~~~~d 270 (302)
+|++++.+++.+ .+++||+++++ .+|+.|+++.+.+.+|.+.....++...... . .........+|
T Consensus 543 va~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d 622 (660)
T 1z7e_A 543 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPS 622 (660)
T ss_dssp HHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCCBC
T ss_pred HHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcccC
Confidence 999999999864 34699999986 8999999999999998653222221110000 0 00111245789
Q ss_pred chhHHHhCC--CcchHHHHHHHHHhhchhhhcC
Q 022112 271 ASKLKTEFP--ELLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 271 ~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~~ 301 (302)
++|++++|| +..+|+++| ++++++++++..
T Consensus 623 ~~ka~~~LG~~p~~~l~egl-~~~i~~~~~~~~ 654 (660)
T 1z7e_A 623 IRNAHRCLDWEPKIDMQETI-DETLDFFLRTVD 654 (660)
T ss_dssp CHHHHHHHCCCCCCCHHHHH-HHHHHHHHTTSC
T ss_pred HHHHHHhcCCCccCcHHHHH-HHHHHHHHhhcc
Confidence 999999999 336999999 999999877653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=271.69 Aligned_cols=275 Identities=18% Similarity=0.203 Sum_probs=207.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------ecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------SGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
++|+||||||+||||++|+++|+++|++|+++ .+|+++.+++.++++..++|+||
T Consensus 10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vi 89 (699)
T 1z45_A 10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 89 (699)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEE
Confidence 45799999999999999999999999998872 46888889999888877899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
|+|+.. .......++...+++|+.++.+++++|++.++ ++|++||.++|+.....+. ..++.|+.+..+. +.|
T Consensus 90 h~A~~~---~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~--~~~~~E~~~~~p~-~~Y 163 (699)
T 1z45_A 90 HFAGLK---AVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPN--MIPIPEECPLGPT-NPY 163 (699)
T ss_dssp ECCSCC---CHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTT--CCSBCTTSCCCCC-SHH
T ss_pred ECCccc---CcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccc--cCCccccCCCCCC-ChH
Confidence 999976 23334456778899999999999999999886 5999999999985421110 2466777766554 899
Q ss_pred hhhHHHHHHHHHhhc-------CceEEeeecccCCCCC---C------chhhHH---HHhcc--cccc-----------c
Q 022112 147 SKTKAMVEELLKNFE-------NVCTLRVRMPISSDLS---N------PRNFIT---KITRY--EKVV-----------N 194 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~-------~~~~lR~~~v~g~~~~---~------~~~~~~---~~~~~--~~~~-----------~ 194 (302)
+.+|..+|++++.+. +.+++|++++||+... + ...++. .+..+ .++. .
T Consensus 164 ~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 243 (699)
T 1z45_A 164 GHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGT 243 (699)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCC
Confidence 999999999987652 2389999999997531 1 123333 23322 1211 2
Q ss_pred ccCCcccHhhHHHHHHHHHhcC--------CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCC
Q 022112 195 IPNSMTILDELLPISIEMAKRN--------LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSN 266 (302)
Q Consensus 195 ~~~~~i~v~D~a~~~~~~~~~~--------~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 266 (302)
..++|+|++|+|++++.+++.. .+++||+++++.+|+.|+++.+++.+|.+.+...... .......
T Consensus 244 ~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~------~~~~~~~ 317 (699)
T 1z45_A 244 PIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR------RAGDVLN 317 (699)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------------CCC
T ss_pred eeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC------CCCcccc
Confidence 3568999999999999988641 2359999999999999999999999998755321110 1111234
Q ss_pred CccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 267 NELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 267 ~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
..+|++|++++|| +..+++|+| +++++|++++.
T Consensus 318 ~~~d~~ka~~~LG~~p~~~l~egl-~~~~~w~~~~~ 352 (699)
T 1z45_A 318 LTAKPDRAKRELKWQTELQVEDSC-KDLWKWTTENP 352 (699)
T ss_dssp CCBCCHHHHHHTCCCCCCCHHHHH-HHHHHHHHHCT
T ss_pred ccCCHHHHHHhcCCCCCCCHHHHH-HHHHHHHHhCC
Confidence 6799999999999 446999999 99999987654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=247.79 Aligned_cols=267 Identities=12% Similarity=0.123 Sum_probs=197.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++|+||||||+||||++|+++|+++|++|+++ .+|++|.+++.++++ ++|+|
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGV 87 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCCEE
Confidence 45799999999999999999999999998862 578888888888777 89999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH-hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC------
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD-KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT------ 138 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~------ 138 (302)
||+|+... . ..++...+++|+.++.+++++|++ .++ ++|++||.++|+...... .+.+++|++.
T Consensus 88 ih~A~~~~---~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~--~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 88 AHIASVVS---F---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNV--EGIYLDEKSWNLESID 159 (342)
T ss_dssp EECCCCCS---C---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTC--CCCEECTTCCCHHHHH
T ss_pred EEeCCCCC---C---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCC--CCcccCccccCchhhh
Confidence 99999762 2 246778999999999999999985 454 599999999986432100 0245667652
Q ss_pred ---------CCCCCCchhhhHHHHHHHHHhhcC-------ceEEeeecccCCCCCC------chhhHHHHhcccccc---
Q 022112 139 ---------PNFVGSFYSKTKAMVEELLKNFEN-------VCTLRVRMPISSDLSN------PRNFITKITRYEKVV--- 193 (302)
Q Consensus 139 ---------~~~~~~~Y~~~K~~~E~~~~~~~~-------~~~lR~~~v~g~~~~~------~~~~~~~~~~~~~~~--- 193 (302)
+..+.+.|+.+|..+|.+++.+.. ..++||+++||+.... ...++..+..+....
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccc
Confidence 112236899999999999876632 3689999999986432 123556666665421
Q ss_pred -cccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCc
Q 022112 194 -NIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDA 271 (302)
Q Consensus 194 -~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 271 (302)
...++|+|++|+|++++.+++++ ..|.++++++..+|+.|+++.+.+.+|.+ .+. ..... .......+|+
T Consensus 240 ~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~-~~~-~~~~~------~~~~~~~~d~ 311 (342)
T 1y1p_A 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSK-TFP-ADFPD------QGQDLSKFDT 311 (342)
T ss_dssp TCCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTS-CCC-CCCCC------CCCCCCEECC
T ss_pred cCCcCCEeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCc-cCC-CCCCc------cccccccCCh
Confidence 14668999999999999999864 34544455668899999999999999875 111 11000 0011356899
Q ss_pred hhHHHhCC-----CcchHHHHHHHHHhhchhh
Q 022112 272 SKLKTEFP-----ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 272 ~k~~~~lg-----~~~~~~e~i~~~~~~~~~~ 298 (302)
+|+++.|| .+++|+++| +++++++++
T Consensus 312 ~k~~~~lg~~~~~~~~~l~~~l-~~~~~~~~~ 342 (342)
T 1y1p_A 312 APSLEILKSLGRPGWRSIEESI-KDLVGSETA 342 (342)
T ss_dssp HHHHHHHHHTTCCSCCCHHHHH-HHHHCCSCC
T ss_pred HHHHHHHhhcccCCcCCHHHHH-HHHHHHhhC
Confidence 99999876 256999999 999888763
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-33 Score=243.68 Aligned_cols=269 Identities=14% Similarity=0.046 Sum_probs=197.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-----CcEEE-----------------eecCCCChhhHHHHHhhcC-CCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-----IDFTY-----------------GSGRLENRASLEADIAAVK-PTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-----~~V~~-----------------~~~dl~~~~~~~~~~~~~~-~d~Vi~~a 70 (302)
+|+|||||||||||++|+++|+++| ++|++ +.+|++|.+++.++++..+ +|+|||+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a 80 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT 80 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence 3689999999999999999999999 88876 3468899999999998544 99999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--CCe-EE-------EEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--GLI-LI-------NYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--~~~-~v-------~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+... .++...+++|+.++.+++++|++. +++ +| ++||.++||..... ..+++|+++..
T Consensus 81 ~~~~--------~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~----~~~~~E~~~~~ 148 (364)
T 2v6g_A 81 WANR--------STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESH----DPPYTEDLPRL 148 (364)
T ss_dssp CCCC--------SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCC----CSSBCTTSCCC
T ss_pred CCCc--------chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccC----CCCCCccccCC
Confidence 9751 357789999999999999999997 665 65 68999999865211 45678887766
Q ss_pred CCCCchhhhHHHHHHHHHhh------cCceEEeeecccCCCCCCchh------hHHHHh--cccccc--------cccCC
Q 022112 141 FVGSFYSKTKAMVEELLKNF------ENVCTLRVRMPISSDLSNPRN------FITKIT--RYEKVV--------NIPNS 198 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~------~~~~~lR~~~v~g~~~~~~~~------~~~~~~--~~~~~~--------~~~~~ 198 (302)
+..+.|. .+|++++.+ .+.+++||+++||+....... ++..+. .+.+.. ....+
T Consensus 149 ~~~~~y~----~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 224 (364)
T 2v6g_A 149 KYMNFYY----DLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSD 224 (364)
T ss_dssp SSCCHHH----HHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBC
T ss_pred ccchhhH----HHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCC
Confidence 5446773 466666554 234899999999986532212 233331 344322 12356
Q ss_pred cccHhhHHHHHHHHHhcC--CCCeEEecCCCccCHHHHHHHHHhhcCCCCccc--ccccc-----------------ccc
Q 022112 199 MTILDELLPISIEMAKRN--LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWK--NFTLE-----------------EQA 257 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~--~~~~~-----------------~~~ 257 (302)
++|++|+|++++.+++++ .+++||+++++.+|+.|+++.+++.+|.+.... ..+.. ...
T Consensus 225 ~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (364)
T 2v6g_A 225 CSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENG 304 (364)
T ss_dssp CEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHHHHHHHHHHhC
Confidence 788899999999999875 345999999999999999999999999775422 22211 000
Q ss_pred -eeeecCC------------CC-CccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 258 -KVIVAPR------------SN-NELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 258 -~~~~~~~------------~~-~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
......+ .. ..+|++|+++ || +..+++|+| ++++++++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l-~~~~~~~~~~g 361 (364)
T 2v6g_A 305 LTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAF-ISWIDKAKAYK 361 (364)
T ss_dssp CCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHH-HHHHHHHHHTT
T ss_pred CCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHH-HHHHHHHHHcC
Confidence 0000000 23 4799999988 99 357999999 99999987653
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=257.83 Aligned_cols=266 Identities=14% Similarity=0.079 Sum_probs=182.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec----------CCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG----------RLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~----------dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
+|+|||||||||||++|++.|+++|++|+++.. |+.+ .+.+.+. ++|+|||+|+... ...+...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~--~~~~~l~--~~D~Vih~A~~~~--~~~~~~~ 220 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLN--PASDLLD--GADVLVHLAGEPI--FGRFNDS 220 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTS--CCTTTTT--TCSEEEECCCC-------CCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccc--hhHHhcC--CCCEEEECCCCcc--ccccchh
Confidence 789999999999999999999999999999543 4432 2334455 8999999999762 1123456
Q ss_pred hHHHHHHHhHHHHHHHHHH-HHHhCC-eEEEEcCCcccc-CCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh
Q 022112 84 HKVETIRTNVVGTLTLADV-CRDKGL-ILINYATGCIFE-YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~-~~~~~~-~~v~~SS~~vy~-~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
++...+++|+.++.+++++ +++.++ ++|++||.++|+ ... +.+++|+.+. + .+.|+.+|...|..+...
T Consensus 221 ~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~------~~~~~E~~~~-~-~~~y~~~~~~~E~~~~~~ 292 (516)
T 3oh8_A 221 HKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRG------DEILTEESES-G-DDFLAEVCRDWEHATAPA 292 (516)
T ss_dssp GHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEE------EEEECTTSCC-C-SSHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCC------CCccCCCCCC-C-cChHHHHHHHHHHHHHHH
Confidence 7788999999999999999 566666 499999999998 332 4567787766 3 488999999998775433
Q ss_pred ----cCceEEeeecccCCCCCCchhhHHHHhccccc----ccccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCH
Q 022112 161 ----ENVCTLRVRMPISSDLSNPRNFITKITRYEKV----VNIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSH 231 (302)
Q Consensus 161 ----~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~ 231 (302)
.+.+++||+++||+.......++..+..+... ..+.++|+|++|+|++++.+++++ ..|+||+++++.+|+
T Consensus 293 ~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~g~~ni~~~~~~s~ 372 (516)
T 3oh8_A 293 SDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISGPINAVAPNPVSN 372 (516)
T ss_dssp HHTTCEEEEEEECEEEBTTBSHHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTTCCEEEEESCSCCEEH
T ss_pred HhCCCCEEEEEeeEEECCCCChHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcccCCcEEEECCCCCCH
Confidence 23499999999998531112222222222221 124578999999999999999875 467999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccccccceee--e--cC--CCCCccCchhHHHhCC---CcchHHHHHHHHHhhch
Q 022112 232 NEILEMYRQYIDPNFTWKNFTLEEQAKVI--V--AP--RSNNELDASKLKTEFP---ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 232 ~e~~~~~~~~~g~~~~~~~~~~~~~~~~~--~--~~--~~~~~~d~~k~~~~lg---~~~~~~e~i~~~~~~~~ 296 (302)
.|+++.+++.+|.+.. ..++........ . .. .....++++|+++ +| .+++|+++| +++++..
T Consensus 373 ~el~~~i~~~~g~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~-lG~~~~~~~l~e~l-~~~l~~~ 443 (516)
T 3oh8_A 373 ADMTKILATSMHRPAF-IQIPSLGPKILLGSQGAEELALASQRTAPAALEN-LSHTFRYTDIGAAI-AHELGYE 443 (516)
T ss_dssp HHHHHHTTC----------------------CCGGGGGGCEEEECCHHHHH-TTCCCSCSSHHHHH-HHHHTCC
T ss_pred HHHHHHHHHHhCCCCC-CCCCHHHHHHHhCCchhHHHhhcCCeechHHHHH-CCCCCCCCCHHHHH-HHHhCcc
Confidence 9999999999997752 222211110000 0 00 1234688999985 78 345699999 8877654
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=236.09 Aligned_cols=265 Identities=14% Similarity=0.153 Sum_probs=184.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++++||||||+||||++|+++|+++|++|++ +.+|++|.+++.++++ ++|+|
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~V 81 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK--GCTGV 81 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT--TCSEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc--CCCEE
Confidence 4579999999999999999999999999875 2347777777888887 89999
Q ss_pred EEccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCC--
Q 022112 67 FNAAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDKG-L-ILINYATGC-IFEYDSGHPLGSGIGFKEEDTPN-- 140 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~-- 140 (302)
||+|+... ....++ ...+++|+.++.+++++|++.+ + ++|++||.+ +|+.... ..++.|+.+..
T Consensus 82 ih~A~~~~-----~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~-----~~~~~E~~~~~~~ 151 (337)
T 2c29_D 82 FHVATPMD-----FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQ-----LPVYDESCWSDME 151 (337)
T ss_dssp EECCCCCC-----SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSC-----CSEECTTCCCCHH
T ss_pred EEeccccC-----CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCC-----CcccCcccCCchh
Confidence 99998651 112233 3588999999999999999886 5 599999987 4543221 23355554211
Q ss_pred ------CCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-chhhHHHH---hcccccc-c--ccCCcccH
Q 022112 141 ------FVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-PRNFITKI---TRYEKVV-N--IPNSMTIL 202 (302)
Q Consensus 141 ------~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-~~~~~~~~---~~~~~~~-~--~~~~~i~v 202 (302)
++...|+.+|.++|.+++.+. +.+++||+++||+.... ....+... +.+.... . ....|+|+
T Consensus 152 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v 231 (337)
T 2c29_D 152 FCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHL 231 (337)
T ss_dssp HHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEH
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEH
Confidence 233579999999999886543 34889999999986422 12222221 2232211 0 12349999
Q ss_pred hhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHHhCC-
Q 022112 203 DELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP- 279 (302)
Q Consensus 203 ~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg- 279 (302)
+|+|++++.+++++ ..+.|++++ ..+|+.|+++.+.+.++. +++. .+. . .........+|++|+ +.||
T Consensus 232 ~Dva~a~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~-~~~----~--~~~~~~~~~~d~~k~-~~lG~ 302 (337)
T 2c29_D 232 DDLCNAHIYLFENPKAEGRYICSS-HDCIILDLAKMLREKYPEYNIPT-EFK----G--VDENLKSVCFSSKKL-TDLGF 302 (337)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECC-EEEEHHHHHHHHHHHCTTSCCCS-CCT----T--CCTTCCCCEECCHHH-HHHTC
T ss_pred HHHHHHHHHHhcCcccCceEEEeC-CCCCHHHHHHHHHHHCCCccCCC-CCC----c--ccCCCccccccHHHH-HHcCC
Confidence 99999999999864 356887665 678999999999998742 2211 000 0 011113457899999 6789
Q ss_pred -CcchHHHHHHHHHhhchhhh
Q 022112 280 -ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 280 -~~~~~~e~i~~~~~~~~~~~ 299 (302)
+..+++|+| +++++|++++
T Consensus 303 ~p~~~l~e~l-~~~~~~~~~~ 322 (337)
T 2c29_D 303 EFKYSLEDMF-TGAVDTCRAK 322 (337)
T ss_dssp CCCCCHHHHH-HHHHHHHHHT
T ss_pred CcCCCHHHHH-HHHHHHHHHc
Confidence 345899999 8899988764
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=231.30 Aligned_cols=265 Identities=18% Similarity=0.191 Sum_probs=183.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEee---------------------------cCCCChhhHHHHHhhcCCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS---------------------------GRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~---------------------------~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
++|||||||||||++|+++|+++|++|++.. +|++|.+++.++++ ++|+||
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi 79 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIE--GCVGIF 79 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHT--TCSEEE
T ss_pred CEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHc--CCCEEE
Confidence 6899999999999999999999999987522 47777888888888 899999
Q ss_pred EccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCccc-cCCCCCCCCCCCCCCCCCCC----
Q 022112 68 NAAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDK-GL-ILINYATGCIF-EYDSGHPLGSGIGFKEEDTP---- 139 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy-~~~~~~~~~~~~~~~e~~~~---- 139 (302)
|+|+.. .....++ ...+++|+.++.+++++|++. ++ ++|++||.+++ +.... ..+++|+++.
T Consensus 80 h~A~~~-----~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~-----~~~~~e~~~~~~~~ 149 (322)
T 2p4h_X 80 HTASPI-----DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKD-----KDVLDESDWSDVDL 149 (322)
T ss_dssp ECCCCC-------------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSC-----CSEECTTCCCCHHH
T ss_pred EcCCcc-----cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCC-----CeecCCccccchhh
Confidence 999743 1222233 358899999999999999987 66 59999998744 32211 2345565432
Q ss_pred ----CCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-chhhHHHH---hccccc--ccccCCcccHhh
Q 022112 140 ----NFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-PRNFITKI---TRYEKV--VNIPNSMTILDE 204 (302)
Q Consensus 140 ----~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-~~~~~~~~---~~~~~~--~~~~~~~i~v~D 204 (302)
.|....|+.+|.++|.++..+. +..++||+++||+.... ...++..+ +.+... .....+|+|++|
T Consensus 150 ~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~D 229 (322)
T 2p4h_X 150 LRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDD 229 (322)
T ss_dssp HHHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHH
T ss_pred hcccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHH
Confidence 1121269999999999886653 33899999999986422 12222222 333221 111237999999
Q ss_pred HHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhHHHhCC--C
Q 022112 205 LLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--E 280 (302)
Q Consensus 205 ~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~ 280 (302)
+|++++.+++++ ..|.|| ++++.+|+.|+++.+.+.++. +++... .... .. ......+|++|+ +.|| +
T Consensus 230 va~a~~~~~~~~~~~g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~--~~---~~~~~~~d~~k~-~~lG~~p 301 (322)
T 2p4h_X 230 VARAHIYLLENSVPGGRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVD-ELKE--IK---GARLPDLNTKKL-VDAGFDF 301 (322)
T ss_dssp HHHHHHHHHHSCCCCEEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTT-TTTT--CC---CEECCEECCHHH-HHTTCCC
T ss_pred HHHHHHHHhhCcCCCCCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCc-cccC--CC---CCcceecccHHH-HHhCCcc
Confidence 999999999764 356799 566889999999999988742 221100 0000 00 002357899999 5589 3
Q ss_pred cchHHHHHHHHHhhchhhhc
Q 022112 281 LLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 281 ~~~~~e~i~~~~~~~~~~~~ 300 (302)
..+++++| +++++|++++.
T Consensus 302 ~~~~~~~l-~~~~~~~~~~~ 320 (322)
T 2p4h_X 302 KYTIEDMF-DDAIQCCKEKG 320 (322)
T ss_dssp CCCHHHHH-HHHHHHHHHHT
T ss_pred CCCHHHHH-HHHHHHHHhcC
Confidence 34999999 99999987654
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=238.10 Aligned_cols=266 Identities=17% Similarity=0.187 Sum_probs=181.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------ecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------SGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
|+|+|||||||||||++|+++|+++|++|++. .+|++|.+++.++++ ++|+||
T Consensus 8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vi 85 (338)
T 2rh8_A 8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIA--GCDFVF 85 (338)
T ss_dssp -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHT--TCSEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHc--CCCEEE
Confidence 46799999999999999999999999998762 356777777778887 799999
Q ss_pred EccccCCCCCcchhhhhH-HHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCc-cccCCCCCCCCCCCCCCCCCCC----
Q 022112 68 NAAGVTGRPNVDWCESHK-VETIRTNVVGTLTLADVCRDKG-L-ILINYATGC-IFEYDSGHPLGSGIGFKEEDTP---- 139 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~-~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~---- 139 (302)
|+|+... . ...++ ...+++|+.++.+++++|++.+ + ++|++||.+ +|+.....+ ..+++|+...
T Consensus 86 h~A~~~~---~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~---~~~~~E~~~~~~~~ 157 (338)
T 2rh8_A 86 HVATPVH---F--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGT---GLVVDEKNWTDIEF 157 (338)
T ss_dssp EESSCCC---C-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCS---CCCCCTTTTTCC--
T ss_pred EeCCccC---C--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCC---CcccChhhccchhh
Confidence 9998652 1 22333 3488999999999999999885 6 599999987 444211100 1244555421
Q ss_pred ----CCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC-chhhHHHH---hccccc-c---------ccc
Q 022112 140 ----NFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN-PRNFITKI---TRYEKV-V---------NIP 196 (302)
Q Consensus 140 ----~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~-~~~~~~~~---~~~~~~-~---------~~~ 196 (302)
.++...|+.+|.++|.+++.+. +.+++||+++||+.... ....+..+ +.+... . ...
T Consensus 158 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 237 (338)
T 2rh8_A 158 LTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGS 237 (338)
T ss_dssp -----CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCc
Confidence 1122369999999999886543 34899999999986422 12222221 233221 0 012
Q ss_pred CCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCC-CCccccccccccceeeecCCCCCccCchhH
Q 022112 197 NSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDP-NFTWKNFTLEEQAKVIVAPRSNNELDASKL 274 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 274 (302)
.+|+|++|+|++++.+++++ ..+.|++++ ..+|+.|+++.+.+.++. +++. .+. . . .......+|++|+
T Consensus 238 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~~~~~~~~~~-~~~--~----~-~~~~~~~~d~~k~ 308 (338)
T 2rh8_A 238 VSIAHVEDVCRAHIFVAEKESASGRYICCA-ANTSVPELAKFLSKRYPQYKVPT-DFG--D----F-PPKSKLIISSEKL 308 (338)
T ss_dssp EEEEEHHHHHHHHHHHHHCTTCCEEEEECS-EEECHHHHHHHHHHHCTTSCCCC-CCT--T----S-CSSCSCCCCCHHH
T ss_pred ccEEEHHHHHHHHHHHHcCCCcCCcEEEec-CCCCHHHHHHHHHHhCCCCCCCC-CCC--C----C-CcCcceeechHHH
Confidence 27999999999999999864 356898876 579999999999998752 2211 010 0 0 0111257899999
Q ss_pred HHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 275 KTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 275 ~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
+.|| +..+++|+| +++++|++++
T Consensus 309 -~~lG~~p~~~l~~gl-~~~~~~~~~~ 333 (338)
T 2rh8_A 309 -VKEGFSFKYGIEEIY-DESVEYFKAK 333 (338)
T ss_dssp -HHHTCCCSCCHHHHH-HHHHHHHHHT
T ss_pred -HHhCCCCCCCHHHHH-HHHHHHHHHc
Confidence 5589 334999999 9999988765
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=224.63 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=183.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC--CCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ--SIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|+|||||||||||++++++|+++ |++|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~- 77 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGPH- 77 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCCC-
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCCC-
Confidence 57999999999999999999998 999887 4578999999999998 899999999853
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~ 153 (302)
.. + ++|+.++.+++++|++.++ ++|++||.++|.. + .+|+.+|..+
T Consensus 78 ---~~----~-----~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~--------------------~-~~y~~~K~~~ 124 (287)
T 2jl1_A 78 ---YD----N-----TLLIVQHANVVKAARDAGVKHIAYTGYAFAEES--------------------I-IPLAHVHLAT 124 (287)
T ss_dssp ---SC----H-----HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGC--------------------C-STHHHHHHHH
T ss_pred ---cC----c-----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCC--------------------C-CchHHHHHHH
Confidence 11 1 5789999999999999988 5999999877630 2 4899999999
Q ss_pred HHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhc-cccc---ccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCC
Q 022112 154 EELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITR-YEKV---VNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNP 226 (302)
Q Consensus 154 E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~-~~~~---~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~ 226 (302)
|++++.. .+.+++||++++++.. ..++..++. +... .+..++|+|++|+|++++.+++++ .+++||++++
T Consensus 125 E~~~~~~~~~~~ilrp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~ 201 (287)
T 2jl1_A 125 EYAIRTTNIPYTFLRNALYTDFFV---NEGLRASTESGAIVTNAGSGIVNSVTRNELALAAATVLTEEGHENKTYNLVSN 201 (287)
T ss_dssp HHHHHHTTCCEEEEEECCBHHHHS---SGGGHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHTSSSCTTEEEEECCS
T ss_pred HHHHHHcCCCeEEEECCEeccccc---hhhHHHHhhCCceeccCCCCccCccCHHHHHHHHHHHhcCCCCCCcEEEecCC
Confidence 9998764 5669999998877421 233344333 3221 134678999999999999999874 3459999999
Q ss_pred CccCHHHHHHHHHhhcCCCCccccccccccc-------eeee-----------cCCCCCccCchhHHHhCCCcchHHHHH
Q 022112 227 GVVSHNEILEMYRQYIDPNFTWKNFTLEEQA-------KVIV-----------APRSNNELDASKLKTEFPELLSIKESL 288 (302)
Q Consensus 227 ~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~-----------~~~~~~~~d~~k~~~~lg~~~~~~e~i 288 (302)
+.+|+.|+++.+.+.+|.+......+..... .+.. ........|++|+++.||++.+++|+|
T Consensus 202 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~l~e~l 281 (287)
T 2jl1_A 202 QPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIGSLTPLKETV 281 (287)
T ss_dssp SCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhCCCCCHHHHH
Confidence 9999999999999999988664433322110 0000 001234678999999888556999999
Q ss_pred HHHHhh
Q 022112 289 IKYVFE 294 (302)
Q Consensus 289 ~~~~~~ 294 (302)
+++++
T Consensus 282 -~~~~~ 286 (287)
T 2jl1_A 282 -KQALK 286 (287)
T ss_dssp -HHHHT
T ss_pred -HHHhc
Confidence 77654
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=240.47 Aligned_cols=273 Identities=15% Similarity=0.087 Sum_probs=187.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec------------------------------------CCCChhhHH
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG------------------------------------RLENRASLE 55 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~------------------------------------dl~~~~~~~ 55 (302)
..+|+|||||||||||++|+++|++.|++|+++.. |+++.+.+.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 34679999999999999999999999998887443 455544444
Q ss_pred HHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 56 ADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 56 ~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
.+ .++|+|||+|+... ...++...+++|+.++.+++++|++...++|++||.++ |.....+. ++.+++|
T Consensus 147 -~~--~~~d~Vih~A~~~~------~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~-~~~~~~E 215 (427)
T 4f6c_A 147 -LP--ENMDTIIHAGARTD------HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDT-EDVTFSE 215 (427)
T ss_dssp -CS--SCCSEEEECCCCC-------------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSC-SCCEECT
T ss_pred -Cc--CCCCEEEECCcccC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCC-CCccccc
Confidence 22 37999999999762 23567788999999999999999994456999999988 53211111 1567888
Q ss_pred CCCCC--CCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCCc----------hhhHHHHhcccccc----cc
Q 022112 136 EDTPN--FVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSNP----------RNFITKITRYEKVV----NI 195 (302)
Q Consensus 136 ~~~~~--~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~~----------~~~~~~~~~~~~~~----~~ 195 (302)
+++.. .+.+.|+.+|..+|.+++.+. ..+++||+++||+..... ..++..+....... +.
T Consensus 216 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (427)
T 4f6c_A 216 ADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEM 295 (427)
T ss_dssp TCSCSSCCCCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTC
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccc
Confidence 87622 244899999999999997753 349999999999865332 13444454444432 45
Q ss_pred cCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceee------------ec
Q 022112 196 PNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVI------------VA 262 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~------------~~ 262 (302)
.++|+|++|+|++++.++..+ .+++||+++++++++.|+++.+.+ +| .+............. ..
T Consensus 296 ~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 372 (427)
T 4f6c_A 296 PVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KE--IELVSDESFNEILQKQDMYETIGLTSVDR 372 (427)
T ss_dssp EECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SC--CEEECHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cC--CcccCHHHHHHHHHhcCchhhhhhhhccc
Confidence 789999999999999999875 567999999999999999999998 56 222211110000000 00
Q ss_pred CCCCCccCchhHH---HhCC-CcchHHH-HHHHHHhhchhhh
Q 022112 263 PRSNNELDASKLK---TEFP-ELLSIKE-SLIKYVFEPNKKT 299 (302)
Q Consensus 263 ~~~~~~~d~~k~~---~~lg-~~~~~~e-~i~~~~~~~~~~~ 299 (302)
......+|+++.. +.+| .++.+.+ .+ +.+++++++.
T Consensus 373 ~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l-~~~~~~l~~~ 413 (427)
T 4f6c_A 373 EQQLAMIDTTLTLKIMNHISEKWPTITNNWL-YHWAQYIKTI 413 (427)
T ss_dssp TSEECEECCHHHHHHHHHTTCCCCCCCHHHH-HHHHHHHHHH
T ss_pred cCCceeccHHHHHHHHHhcCCCCCCCCHHHH-HHHHHHHHHH
Confidence 0012457777776 4467 5555555 45 7777777654
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=218.68 Aligned_cols=238 Identities=10% Similarity=0.043 Sum_probs=177.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhC--CCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQ--SIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~--g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
+|||||||||||++++++|+++ |++|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~-- 76 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSE-- 76 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC-----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCC--
Confidence 5899999999999999999998 999887 4678999999999998 899999999843
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
. ..|+.++.+++++|++.+++ +|++||..+|. .+ ..|+.+|..+|
T Consensus 77 --~-----------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~--------------------~~-~~y~~sK~~~e 122 (286)
T 2zcu_A 77 --V-----------GQRAPQHRNVINAAKAAGVKFIAYTSLLHADT--------------------SP-LGLADEHIETE 122 (286)
T ss_dssp ------------------CHHHHHHHHHHHHTCCEEEEEEETTTTT--------------------CC-STTHHHHHHHH
T ss_pred --c-----------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC--------------------Cc-chhHHHHHHHH
Confidence 1 14788999999999999875 99999987762 12 58999999999
Q ss_pred HHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCC
Q 022112 155 ELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPG 227 (302)
Q Consensus 155 ~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~ 227 (302)
++++.. .+.+++||++++++ ...++..++...... ...++++|++|+|++++.+++++ .+++||+++++
T Consensus 123 ~~~~~~~~~~~ilrp~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~~~ 198 (286)
T 2zcu_A 123 KMLADSGIVYTLLRNGWYSEN----YLASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDS 198 (286)
T ss_dssp HHHHHHCSEEEEEEECCBHHH----HHTTHHHHHHHTEEEESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTCEEEECCSS
T ss_pred HHHHHcCCCeEEEeChHHhhh----hHHHhHHhhcCCceeccCCCCccccccHHHHHHHHHHHhcCCCCCCceEEEeCCC
Confidence 998764 45699999876553 123344444332221 34678999999999999999874 35699999999
Q ss_pred ccCHHHHHHHHHhhcCCCCccccccccccce-----eee-------------cCCCCCccCchhHHHhCC-CcchHHHHH
Q 022112 228 VVSHNEILEMYRQYIDPNFTWKNFTLEEQAK-----VIV-------------APRSNNELDASKLKTEFP-ELLSIKESL 288 (302)
Q Consensus 228 ~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~-------------~~~~~~~~d~~k~~~~lg-~~~~~~e~i 288 (302)
.+|+.|+++.+.+.+|.+......+...... ..+ ........|++|+++.|| ++.+++|+|
T Consensus 199 ~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~e~l 278 (286)
T 2zcu_A 199 AWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGHPTTTLAESV 278 (286)
T ss_dssp CBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTSCCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCcCCCCHHHHH
Confidence 9999999999999999886544333221110 000 001124678999999999 788999999
Q ss_pred HHHHhhch
Q 022112 289 IKYVFEPN 296 (302)
Q Consensus 289 ~~~~~~~~ 296 (302)
+++++++
T Consensus 279 -~~~~~~~ 285 (286)
T 2zcu_A 279 -SHLFNVN 285 (286)
T ss_dssp -HGGGC--
T ss_pred -HHHHhhc
Confidence 8887765
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-31 Score=242.47 Aligned_cols=220 Identities=17% Similarity=0.132 Sum_probs=163.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec------------------------------------CCCChhhHH
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG------------------------------------RLENRASLE 55 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~------------------------------------dl~~~~~~~ 55 (302)
+.+|+|||||||||||++|+++|+++|++|+++.+ |+++++.+.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 34679999999999999999999999988887543 444444444
Q ss_pred HHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 56 ADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 56 ~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
.. .++|+|||+|+... ...++....++|+.++.+++++|++...++|++||.++ |.....+. ++.+++|
T Consensus 228 -~~--~~~D~Vih~Aa~~~------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~-~~~~~~E 296 (508)
T 4f6l_B 228 -LP--ENMDTIIHAGARTD------HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDT-EDVTFSE 296 (508)
T ss_dssp -CS--SCCSEEEECCCC--------------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTC-SCCEECT
T ss_pred -Cc--cCCCEEEECCceec------CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCC-cCccccc
Confidence 22 37999999999762 23466778899999999999999995557999999998 43211111 1567888
Q ss_pred CCCCC--CCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCCc----------hhhHHHHhcccccc----cc
Q 022112 136 EDTPN--FVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSNP----------RNFITKITRYEKVV----NI 195 (302)
Q Consensus 136 ~~~~~--~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~~----------~~~~~~~~~~~~~~----~~ 195 (302)
+++.. .+.+.|+.+|..+|++++.+. ..+++||+++||+...+. ..++..+....... ..
T Consensus 297 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~ 376 (508)
T 4f6l_B 297 ADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEM 376 (508)
T ss_dssp TCSCSSBCCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGS
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCc
Confidence 87632 144899999999999997754 348999999999865332 12344444444322 35
Q ss_pred cCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhc
Q 022112 196 PNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
.++|+|++|+|++++.++..+ .+++||+++++.+++.|+++.+.+..
T Consensus 377 ~~~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~ 424 (508)
T 4f6l_B 377 PVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE 424 (508)
T ss_dssp EEECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC
T ss_pred eEEEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC
Confidence 678999999999999999875 56799999999999999999999865
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=215.04 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=151.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
+||+|||||||||||++|+++|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+...
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~- 79 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGW- 79 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC---
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCC-
Confidence 4689999999999999999999999999888 4689999999999999 8999999998541
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
.....+++|+.++.+++++|++.++ ++|++||..+|.... ....|+.+..|. +.|+.+|...|
T Consensus 80 --------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~-------~~~~~~~~~~p~-~~Y~~sK~~~e 143 (227)
T 3dhn_A 80 --------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAP-------GLRLMDSGEVPE-NILPGVKALGE 143 (227)
T ss_dssp ------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEET-------TEEGGGTTCSCG-GGHHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCC-------CCccccCCcchH-HHHHHHHHHHH
Confidence 1223678899999999999999987 599999998776542 122344455444 89999999999
Q ss_pred HHHHhhc-C----ceEEeeecccCCCCCCchhhHHHHhcccc--c-ccccCCcccHhhHHHHHHHHHhcCC--CCeEEec
Q 022112 155 ELLKNFE-N----VCTLRVRMPISSDLSNPRNFITKITRYEK--V-VNIPNSMTILDELLPISIEMAKRNL--TGIWNFT 224 (302)
Q Consensus 155 ~~~~~~~-~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~-~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~ 224 (302)
.+++.+. . .+++||+++||+..... .+ ..+.. . ....++|+|++|+|++++.+++++. +++|+++
T Consensus 144 ~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~-~~----~~~~~~~~~~~~~~~~i~~~Dva~ai~~~l~~~~~~g~~~~~~ 218 (227)
T 3dhn_A 144 FYLNFLMKEKEIDWVFFSPAADMRPGVRTG-RY----RLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIG 218 (227)
T ss_dssp HHHHTGGGCCSSEEEEEECCSEEESCCCCC-CC----EEESSBCCCCTTSCCEEEHHHHHHHHHHHHHSCCCCSEEEEEE
T ss_pred HHHHHHhhccCccEEEEeCCcccCCCcccc-ce----eecCCCcccCCCCCcEEeHHHHHHHHHHHHhCccccCcEEEEE
Confidence 8887765 2 38999999999864221 11 11111 1 1234789999999999999999863 5699999
Q ss_pred CCCccCHHH
Q 022112 225 NPGVVSHNE 233 (302)
Q Consensus 225 ~~~~~s~~e 233 (302)
++++.++.+
T Consensus 219 ~~~~~~~~~ 227 (227)
T 3dhn_A 219 YLEHHHHHH 227 (227)
T ss_dssp CCSCCC---
T ss_pred eehhcccCC
Confidence 999988753
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=235.42 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=171.3
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhC---CCcEEEe---------------------------------------ecCCC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQ---SIDFTYG---------------------------------------SGRLE 49 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~---g~~V~~~---------------------------------------~~dl~ 49 (302)
..+|+|||||||||||++|+++|+++ |++|+++ .+|++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 150 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS 150 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence 35789999999999999999999998 8888773 56776
Q ss_pred ------ChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCC
Q 022112 50 ------NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYD 122 (302)
Q Consensus 50 ------~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~ 122 (302)
+.+.+..+++ ++|+|||+|+... . .++...+++|+.++.+++++|++.++ ++|++||.++|+..
T Consensus 151 ~~~~gld~~~~~~~~~--~~D~Vih~Aa~~~---~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~ 221 (478)
T 4dqv_A 151 EPDLGLDQPMWRRLAE--TVDLIVDSAAMVN---A----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAI 221 (478)
T ss_dssp SGGGGCCHHHHHHHHH--HCCEEEECCSSCS---B----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTS
T ss_pred CcccCCCHHHHHHHHc--CCCEEEECccccC---C----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCcc
Confidence 5567888888 8999999999872 2 45556789999999999999999887 59999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCC----------CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCC----CchhhH
Q 022112 123 SGHPLGSGIGFKEEDTPNFV----------GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLS----NPRNFI 183 (302)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~----------~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~----~~~~~~ 183 (302)
. ..++.|+++..+. .+.|+.+|..+|.+++.+. ..+++||+++||+... ....++
T Consensus 222 ~------~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~ 295 (478)
T 4dqv_A 222 E------PSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWV 295 (478)
T ss_dssp C------TTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHH
T ss_pred C------CCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHH
Confidence 5 4556776643322 1449999999999997763 3489999999997431 223444
Q ss_pred HHHhcc----cccc-------------cccCCcccHhhHHHHHHHHHhc------CCCCeEEecCCCc--cCHHHHHHHH
Q 022112 184 TKITRY----EKVV-------------NIPNSMTILDELLPISIEMAKR------NLTGIWNFTNPGV--VSHNEILEMY 238 (302)
Q Consensus 184 ~~~~~~----~~~~-------------~~~~~~i~v~D~a~~~~~~~~~------~~~~~~~~~~~~~--~s~~e~~~~~ 238 (302)
..++.. ...+ ....+|+|++|+|++++.++.. ..+++||+++++. +|+.|+++.+
T Consensus 296 ~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l 375 (478)
T 4dqv_A 296 TRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWL 375 (478)
T ss_dssp HHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHH
Confidence 444332 1111 3456899999999999998864 2346999999988 9999999999
Q ss_pred HhhcCCCCc
Q 022112 239 RQYIDPNFT 247 (302)
Q Consensus 239 ~~~~g~~~~ 247 (302)
.+. |.+..
T Consensus 376 ~~~-g~~~~ 383 (478)
T 4dqv_A 376 IEA-GYPIR 383 (478)
T ss_dssp HHT-TCSCE
T ss_pred HHc-CCCcc
Confidence 996 76654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=223.29 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=166.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CC-cEEE----------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SI-DFTY----------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~-~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
++|+||||||||+||++++++|+++ |+ +|++ +.+|++|.+++.++++ ++|+|||
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vih 97 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE--GVDICIH 97 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT--TCSEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh--cCCEEEE
Confidence 3579999999999999999999999 97 7776 4578999999999998 8999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
+|+.. ....+..++...+++|+.++.+++++|++.+++ +|++||..++. +.+.|+
T Consensus 98 ~Aa~~---~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~---------------------p~~~Y~ 153 (344)
T 2gn4_A 98 AAALK---HVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN---------------------PINLYG 153 (344)
T ss_dssp CCCCC---CHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS---------------------CCSHHH
T ss_pred CCCCC---CCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC---------------------CccHHH
Confidence 99977 344455678899999999999999999999874 99999865542 237999
Q ss_pred hhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhccc-ccc----cccCCcccHhhHHHHHHHHHh
Q 022112 148 KTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYE-KVV----NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~-~~~----~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.+|..+|.+++.+.. .+++||+++||+.....+.|+..+..+. ++. ...++|+|++|+|++++.+++
T Consensus 154 ~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~~i~~~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~ 233 (344)
T 2gn4_A 154 ATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLK 233 (344)
T ss_dssp HHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTSHHHHHHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCCHHHHHHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHh
Confidence 999999999877542 2889999999976433345666666665 322 235679999999999999998
Q ss_pred cCCC-CeEEecCCCccCHHHHHHHHHhhcC
Q 022112 215 RNLT-GIWNFTNPGVVSHNEILEMYRQYID 243 (302)
Q Consensus 215 ~~~~-~~~~~~~~~~~s~~e~~~~~~~~~g 243 (302)
++.. ++|++.++ .+++.|+++.+.+.++
T Consensus 234 ~~~~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 234 RMHGGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HCCSSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred hccCCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 7654 59998775 6999999999997654
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-30 Score=225.41 Aligned_cols=198 Identities=18% Similarity=0.202 Sum_probs=164.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC-CChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL-ENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 92 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl-~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n 92 (302)
|||||||||||||++|+++|+++|+ +|+. .|+ .|.+++.++++ ++|+|||+|+... ..++...++.|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~--~d~~~d~~~l~~~~~--~~d~Vih~a~~~~-------~~~~~~~~~~n 69 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFE--VHRQTKEEELESALL--KADFIVHLAGVNR-------PEHDKEFSLGN 69 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEE--CCTTCCHHHHHHHHH--HCSEEEECCCSBC-------TTCSTTCSSSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEE--ECCCCCHHHHHHHhc--cCCEEEECCcCCC-------CCCHHHHHHHH
Confidence 7999999999999999999999998 7754 566 89999999999 7999999999762 23556677899
Q ss_pred HHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-----cCceE
Q 022112 93 VVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-----ENVCT 165 (302)
Q Consensus 93 ~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-----~~~~~ 165 (302)
+.++.+++++|++.++ ++|++||..+|+ . +.|+.+|..+|++++.+ .+.++
T Consensus 70 ~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~---------------------~-~~Y~~sK~~~E~~~~~~~~~~g~~~~i 127 (369)
T 3st7_A 70 VSYLDHVLDILTRNTKKPAILLSSSIQATQ---------------------D-NPYGESKLQGEQLLREYAEEYGNTVYI 127 (369)
T ss_dssp CBHHHHHHHHHTTCSSCCEEEEEEEGGGGS---------------------C-SHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeCchhhcC---------------------C-CCchHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999885 599999988876 2 79999999999998764 34499
Q ss_pred EeeecccCCCCCCc-----hhhHHHHhcccccc----cccCCcccHhhHHHHHHHHHhcCC---CCeEEecCCCccCHHH
Q 022112 166 LRVRMPISSDLSNP-----RNFITKITRYEKVV----NIPNSMTILDELLPISIEMAKRNL---TGIWNFTNPGVVSHNE 233 (302)
Q Consensus 166 lR~~~v~g~~~~~~-----~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~~s~~e 233 (302)
+||+++||+..... ..|+..+..+..+. ...++++|++|+|++++.+++++. +++||+++++.+|+.|
T Consensus 128 ~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~~~~i~~~~~~s~~e 207 (369)
T 3st7_A 128 YRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVFKVTLGE 207 (369)
T ss_dssp EEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCCEETTEECCSCCEEEEHHH
T ss_pred EECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcccCCceEEeCCCCceeHHH
Confidence 99999999854221 23455555665432 245689999999999999998753 5799999999999999
Q ss_pred HHHHHHhhcCCC
Q 022112 234 ILEMYRQYIDPN 245 (302)
Q Consensus 234 ~~~~~~~~~g~~ 245 (302)
+++.+.+.+|.+
T Consensus 208 ~~~~~~~~~g~~ 219 (369)
T 3st7_A 208 IVDLLYKFKQSR 219 (369)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC
Confidence 999999998865
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=211.90 Aligned_cols=201 Identities=11% Similarity=0.138 Sum_probs=159.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|||+|||||||||||++|+++|+++|++|++ +.+|++|.+.+.++++ ++|+|||+|+..
T Consensus 1 M~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~---- 74 (267)
T 3ay3_A 1 MLNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVK--DCDGIIHLGGVS---- 74 (267)
T ss_dssp CEEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHT--TCSEEEECCSCC----
T ss_pred CCceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHc--CCCEEEECCcCC----
Confidence 4568999999999999999999999998887 3478999999999998 899999999965
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
...++...+++|+.++.+++++|++.++ ++|++||..+|+.... ..+++|++++.+. +.|+.+|..+|.+
T Consensus 75 ---~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~-----~~~~~E~~~~~~~-~~Y~~sK~~~e~~ 145 (267)
T 3ay3_A 75 ---VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPR-----TTRIDTEVPRRPD-SLYGLSKCFGEDL 145 (267)
T ss_dssp ---SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBT-----TSCBCTTSCCCCC-SHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCC-----CCCCCCCCCCCCC-ChHHHHHHHHHHH
Confidence 2345577899999999999999999887 5999999999986431 4567888877665 8999999999999
Q ss_pred HHhhc-----CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC--CCeEEecCCCcc
Q 022112 157 LKNFE-----NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIWNFTNPGVV 229 (302)
Q Consensus 157 ~~~~~-----~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~ 229 (302)
++.+. +.+++||+++|+... . ....++|+|++|+|++++.+++++. .++||+.++...
T Consensus 146 ~~~~~~~~gi~~~~lrp~~v~~~~~-~--------------~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (267)
T 3ay3_A 146 ASLYYHKFDIETLNIRIGSCFPKPK-D--------------ARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASANTE 210 (267)
T ss_dssp HHHHHHTTCCCEEEEEECBCSSSCC-S--------------HHHHHHBCCHHHHHHHHHHHHHSSCCCEEEEEECCSCSS
T ss_pred HHHHHHHcCCCEEEEeceeecCCCC-C--------------CCeeeccccHHHHHHHHHHHHhCCCCCceeEecCCCccc
Confidence 87642 338999999985311 0 0124568999999999999998754 358888876666
Q ss_pred CHHHHHHHHHhhcCCC
Q 022112 230 SHNEILEMYRQYIDPN 245 (302)
Q Consensus 230 s~~e~~~~~~~~~g~~ 245 (302)
++.|+.+. +.+|.+
T Consensus 211 ~~~d~~~~--~~lg~~ 224 (267)
T 3ay3_A 211 SWWDNDKS--AFLGWV 224 (267)
T ss_dssp CCBCCGGG--GGGCCC
T ss_pred cccCHHHH--HHcCCC
Confidence 66665555 555544
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=214.43 Aligned_cols=251 Identities=13% Similarity=0.137 Sum_probs=178.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
+|+|||||||||||++|++.|+++|++|++ +.+|++|.+++.+++++.++|+|||
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 468999999999999999999999999887 3678999999999999889999999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
+|+. .|+.++.+++++|++.+ ++.++.| +||.. +.|..+.. +...|+
T Consensus 90 ~a~~------------------~n~~~~~~l~~aa~~~g~v~~~v~S---~~g~~----------~~e~~~~~-p~~~y~ 137 (346)
T 3i6i_A 90 TVGG------------------ESILDQIALVKAMKAVGTIKRFLPS---EFGHD----------VNRADPVE-PGLNMY 137 (346)
T ss_dssp CCCG------------------GGGGGHHHHHHHHHHHCCCSEEECS---CCSSC----------TTTCCCCT-THHHHH
T ss_pred CCch------------------hhHHHHHHHHHHHHHcCCceEEeec---ccCCC----------CCccCcCC-CcchHH
Confidence 9984 26778899999999999 8866654 35532 23444443 337999
Q ss_pred hhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHh---cccccc-----cccCCcccHhhHHHHHHHHHhcC--
Q 022112 148 KTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKIT---RYEKVV-----NIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 148 ~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~---~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
.+|..+|++++.. ...+++||++++|... +.+..... ...... ...++|+|++|+|++++.+++.+
T Consensus 138 ~sK~~~e~~l~~~g~~~tivrpg~~~g~~~---~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~ 214 (346)
T 3i6i_A 138 REKRRVRQLVEESGIPFTYICCNSIASWPY---YNNIHPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT 214 (346)
T ss_dssp HHHHHHHHHHHHTTCCBEEEECCEESSCCC---SCC-----CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEecccccccC---ccccccccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc
Confidence 9999999999765 5669999999999532 12222111 222211 23668999999999999999875
Q ss_pred CCCeEEecC-CCccCHHHHHHHHHhhcCCCCccccccccccceeee-cC----------------CCCCccCc-----hh
Q 022112 217 LTGIWNFTN-PGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIV-AP----------------RSNNELDA-----SK 273 (302)
Q Consensus 217 ~~~~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~d~-----~k 273 (302)
.+++||+.+ ++.+|+.|+++.+.+.+|.+.++...+......... .. .....++. .+
T Consensus 215 ~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 294 (346)
T 3i6i_A 215 LNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVE 294 (346)
T ss_dssp TTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCCSTTEEE
T ss_pred cCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccCCCCccc
Confidence 356899985 489999999999999999987654333322110000 00 00011222 34
Q ss_pred HHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 274 LKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 274 ~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+++.+. .+++++|.| ++++++++.+.
T Consensus 295 ~~~~~p~~~~t~~~e~l-~~~~~~~~~~~ 322 (346)
T 3i6i_A 295 VTTLYPEDSFRTVEECF-GEYIVKMEEKQ 322 (346)
T ss_dssp HHHHSTTCCCCCHHHHH-HHHHCC-----
T ss_pred HHHhCCCCCcCcHHHHH-HHHHHHhhccc
Confidence 677777 788999999 88888877653
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=205.81 Aligned_cols=201 Identities=10% Similarity=0.133 Sum_probs=162.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNV 78 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~ 78 (302)
||+||||||+|+||++|++.|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vi~~Ag~~----- 75 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVA--GCDGIVHLGGIS----- 75 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHT--TCSEEEECCSCC-----
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHc--CCCEEEECCCCc-----
Confidence 568999999999999999999999998877 5689999999999999 899999999975
Q ss_pred chhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHH
Q 022112 79 DWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELL 157 (302)
Q Consensus 79 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~ 157 (302)
...++...+++|+.++.+++++|++.+. ++|++||..+|+.... ..++.|+.+..+. +.|+.+|...|.++
T Consensus 76 --~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~-----~~~~~e~~~~~~~-~~Y~~sK~~~e~~~ 147 (267)
T 3rft_A 76 --VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQ-----TERLGPDVPARPD-GLYGVSKCFGENLA 147 (267)
T ss_dssp --SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBT-----TSCBCTTSCCCCC-SHHHHHHHHHHHHH
T ss_pred --CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCC-----CCCCCCCCCCCCC-ChHHHHHHHHHHHH
Confidence 2446678999999999999999999886 5999999999975432 4567777766555 89999999999998
Q ss_pred Hhhc-----CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC--CeEEecCCCccC
Q 022112 158 KNFE-----NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT--GIWNFTNPGVVS 230 (302)
Q Consensus 158 ~~~~-----~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~--~~~~~~~~~~~s 230 (302)
+.+. +.+++||+.++++... .....+|++++|+++++..+++.+.. .++++.++++.+
T Consensus 148 ~~~a~~~g~~~~~vr~~~v~~~~~~---------------~~~~~~~~~~~d~a~~~~~~~~~~~~~~~~~~~~s~~~~~ 212 (267)
T 3rft_A 148 RMYFDKFGQETALVRIGSCTPEPNN---------------YRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAG 212 (267)
T ss_dssp HHHHHHHCCCEEEEEECBCSSSCCS---------------TTHHHHBCCHHHHHHHHHHHHHCSCCCSCEEEECCCCTTC
T ss_pred HHHHHHhCCeEEEEEeecccCCCCC---------------CCceeeEEcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCC
Confidence 7553 3378999999986221 11234578999999999999987543 478888888888
Q ss_pred HHHHHHHHHhhcCCCC
Q 022112 231 HNEILEMYRQYIDPNF 246 (302)
Q Consensus 231 ~~e~~~~~~~~~g~~~ 246 (302)
+.++... +.+|...
T Consensus 213 ~~~~~~~--~~~g~~p 226 (267)
T 3rft_A 213 WWDNSHL--GFLGWKP 226 (267)
T ss_dssp CBCCGGG--GGGCCCC
T ss_pred cccChhH--HHCCCCC
Confidence 8776443 5666543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=203.66 Aligned_cols=188 Identities=13% Similarity=0.138 Sum_probs=151.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCC-hhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLEN-RASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~-~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|||||||||||||+++++.|+++|++|++ +.+|++| .+++.++++ ++|+|||+|+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~--- 75 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGG--- 75 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTT---
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCC---
Confidence 69999999999999999999999999887 5789999 999999998 8999999999762
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
...+++|+.++.+++++|++.++ ++|++||.++++. .++.| .++.+. ..|+.+|..+|++
T Consensus 76 --------~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~---------~~~~e-~~~~~~-~~Y~~sK~~~e~~ 136 (219)
T 3dqp_A 76 --------KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQP---------EKWIG-AGFDAL-KDYYIAKHFADLY 136 (219)
T ss_dssp --------SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCG---------GGCCS-HHHHHT-HHHHHHHHHHHHH
T ss_pred --------CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCC---------Ccccc-cccccc-cHHHHHHHHHHHH
Confidence 12667899999999999999987 4999999777652 33444 333333 8999999999999
Q ss_pred H-Hhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC--CCeEEecCCCccCHH
Q 022112 157 L-KNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIWNFTNPGVVSHN 232 (302)
Q Consensus 157 ~-~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~~~s~~ 232 (302)
+ +.. .+.+++||+++||+...+... ......++++++|+|++++.+++++. +++||++++ ..++.
T Consensus 137 ~~~~~~i~~~ilrp~~v~g~~~~~~~~----------~~~~~~~~i~~~Dva~~i~~~l~~~~~~g~~~~i~~g-~~~~~ 205 (219)
T 3dqp_A 137 LTKETNLDYTIIQPGALTEEEATGLID----------INDEVSASNTIGDVADTIKELVMTDHSIGKVISMHNG-KTAIK 205 (219)
T ss_dssp HHHSCCCEEEEEEECSEECSCCCSEEE----------ESSSCCCCEEHHHHHHHHHHHHTCGGGTTEEEEEEEC-SEEHH
T ss_pred HHhccCCcEEEEeCceEecCCCCCccc----------cCCCcCCcccHHHHHHHHHHHHhCccccCcEEEeCCC-CccHH
Confidence 8 433 345999999999975422211 11457889999999999999998753 569999886 49999
Q ss_pred HHHHH
Q 022112 233 EILEM 237 (302)
Q Consensus 233 e~~~~ 237 (302)
|+.+.
T Consensus 206 e~~~~ 210 (219)
T 3dqp_A 206 EALES 210 (219)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 98753
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=197.65 Aligned_cols=234 Identities=12% Similarity=0.127 Sum_probs=169.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
|+|||||||||||+++++.|++. |++|++ +.+|++|++++.++++ ++|+|||+|+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~- 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIH- 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCC-
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc-
Confidence 68999999999999999999998 899887 5689999999999999 8999999999752
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
. ...|+.++.+++++|++.+++ +|++|| |+... .. + ..+...+..+|
T Consensus 78 --~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss---~~~~~-------------~~---~-~~~~~~~~~~e 125 (289)
T 3e48_A 78 --P----------SFKRIPEVENLVYAAKQSGVAHIIFIGY---YADQH-------------NN---P-FHMSPYFGYAS 125 (289)
T ss_dssp --S----------HHHHHHHHHHHHHHHHHTTCCEEEEEEE---SCCST-------------TC---C-STTHHHHHHHH
T ss_pred --c----------chhhHHHHHHHHHHHHHcCCCEEEEEcc---cCCCC-------------CC---C-CccchhHHHHH
Confidence 1 124788899999999999975 888888 33221 00 1 12223334566
Q ss_pred HHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccc----cccCCcccHhhHHHHHHHHHhcCC--CCeEEecCCC
Q 022112 155 ELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVV----NIPNSMTILDELLPISIEMAKRNL--TGIWNFTNPG 227 (302)
Q Consensus 155 ~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 227 (302)
..++.. ...+++||++++|+ ...++..+....... +...+|+|++|+|++++.++..+. +++||++ ++
T Consensus 126 ~~~~~~g~~~~ilrp~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~-~~ 200 (289)
T 3e48_A 126 RLLSTSGIDYTYVRMAMYMDP----LKPYLPELMNMHKLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGKRYLLS-GY 200 (289)
T ss_dssp HHHHHHCCEEEEEEECEESTT----HHHHHHHHHHHTEECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTCEEEEC-CE
T ss_pred HHHHHcCCCEEEEeccccccc----cHHHHHHHHHCCCEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCceEEeC-CC
Confidence 665443 55699999999985 223444444333221 345679999999999999998753 5699999 99
Q ss_pred ccCHHHHHHHHHhhcCCCCccccccccccceeeec---------------CCCCCccCchhHHHhCC-CcchHHHHH
Q 022112 228 VVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVA---------------PRSNNELDASKLKTEFP-ELLSIKESL 288 (302)
Q Consensus 228 ~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---------------~~~~~~~d~~k~~~~lg-~~~~~~e~i 288 (302)
.+|+.|+++.+.+.+|.++.+...+..+....... .......+...+++.+| ++.+++|-+
T Consensus 201 ~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~G~~p~~~~~~~ 277 (289)
T 3e48_A 201 SYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLDQESNDFKQLVNDQPQTLQSFL 277 (289)
T ss_dssp EEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTCCCCSHHHHHHSSCCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCccccCchHHHHhCCCCCCHHHHH
Confidence 99999999999999999876554433222111100 00122356777888899 788888777
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=201.15 Aligned_cols=246 Identities=14% Similarity=0.146 Sum_probs=175.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
+|+||||||||+||++++++|+++| ++|++ +.+|++|++++.++++ ++|+|||+++.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~ 82 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVTNY 82 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeCCC
Confidence 5789999999999999999999998 89887 4578899999999998 89999999884
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
.. .. ..+.|+.++.+++++|++.+++ +|+.||..+|+... . .+. ..|+.+|.
T Consensus 83 ~~-------~~----~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~------------~---~~~-~~y~~sK~ 135 (299)
T 2wm3_A 83 WE-------SC----SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA------------G---RLA-AAHFDGKG 135 (299)
T ss_dssp HH-------HT----CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT------------T---SCC-CHHHHHHH
T ss_pred Cc-------cc----cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC------------C---ccc-CchhhHHH
Confidence 30 00 1346788999999999999885 78877767776321 1 123 68999999
Q ss_pred HHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHh-cccc------cccccCCcccHhhHHHHHHHHHhcC---CCCe
Q 022112 152 MVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKIT-RYEK------VVNIPNSMTILDELLPISIEMAKRN---LTGI 220 (302)
Q Consensus 152 ~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~-~~~~------~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~ 220 (302)
.+|++++.. .+.+++||+++||+.. ..++.... .+.. ..+...+|+|++|+|++++.++..+ .+++
T Consensus 136 ~~e~~~~~~gi~~~ilrp~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g~~ 212 (299)
T 2wm3_A 136 EVEEYFRDIGVPMTSVRLPCYFENLL---SHFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQN 212 (299)
T ss_dssp HHHHHHHHHTCCEEEEECCEEGGGGG---TTTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTTCE
T ss_pred HHHHHHHHCCCCEEEEeecHHhhhch---hhcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCCeE
Confidence 999999764 5679999999998532 11221111 2211 1124567999999999999999763 3569
Q ss_pred EEecCCCccCHHHHHHHHHhhcCCCCcccccccccccee-----------eecCCCCCccCchhHHHhCC-CcchHHHHH
Q 022112 221 WNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKV-----------IVAPRSNNELDASKLKTEFP-ELLSIKESL 288 (302)
Q Consensus 221 ~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~~k~~~~lg-~~~~~~e~i 288 (302)
|++++ +.+|+.|+++.+.+.+|.++.+..++....... ....... ........+.+| ++.+|+|-+
T Consensus 213 ~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~ 290 (299)
T 2wm3_A 213 IGLST-CRHTAEEYAALLTKHTRKVVHDAKMTPEDYEKLGFPGARDLANMFRFYALR-PDRDIELTLRLNPKALTLDQWL 290 (299)
T ss_dssp EECCS-EEECHHHHHHHHHHHHSSCEEECCCCTHHHHTTCSTTHHHHHHHHHHHTTC-CCCCHHHHHHHCTTCCCHHHHH
T ss_pred EEeee-ccCCHHHHHHHHHHHHCCCceeEecCHHHHHhcCCCcHHHHHHHHHHHHhc-CCCCHHHHHHhCCCCCCHHHHH
Confidence 99987 789999999999999998865444433221100 0000001 112234556688 888999999
Q ss_pred HHHHhh
Q 022112 289 IKYVFE 294 (302)
Q Consensus 289 ~~~~~~ 294 (302)
++..+
T Consensus 291 -~~~~~ 295 (299)
T 2wm3_A 291 -EQHKG 295 (299)
T ss_dssp -HHHGG
T ss_pred -HhChh
Confidence 55443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=194.66 Aligned_cols=214 Identities=8% Similarity=0.051 Sum_probs=157.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC--CCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~--g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
++|+||||||+|+||++++++|+++ |++|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~ 80 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAV 80 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHc--CCCEEEEecccc
Confidence 4679999999999999999999999 899887 4678999999999998 899999999965
Q ss_pred CCCC----------cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC-
Q 022112 74 GRPN----------VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF- 141 (302)
Q Consensus 74 ~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~- 141 (302)
.... ...........+++|+.++.+++++|++.++ ++|++||..++.... +..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~~~~--------------~~~~~ 146 (253)
T 1xq6_A 81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH--------------PLNKL 146 (253)
T ss_dssp CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTC--------------GGGGG
T ss_pred ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCCCCC--------------ccccc
Confidence 2000 0111122235678999999999999999887 599999987653211 1100
Q ss_pred CCCchhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--CC
Q 022112 142 VGSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--LT 218 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~ 218 (302)
....|+.+|..+|.+++.. .+..++||+++||+...... ++.. ..........+++|++|+|++++.+++++ .+
T Consensus 147 ~~~~y~~sK~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~Dva~~~~~~~~~~~~~g 223 (253)
T 1xq6_A 147 GNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRE-LLVG--KDDELLQTDTKTVPRADVAEVCIQALLFEEAKN 223 (253)
T ss_dssp GGCCHHHHHHHHHHHHHTSSSCEEEEEECEEECSCSSSSC-EEEE--STTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTT
T ss_pred cchhHHHHHHHHHHHHHhCCCceEEEecceeecCCcchhh-hhcc--CCcCCcCCCCcEEcHHHHHHHHHHHHcCccccC
Confidence 1145778999999998764 45699999999997532111 1100 00111222456999999999999999875 34
Q ss_pred CeEEecCCC---ccCHHHHHHHHHhhcCCC
Q 022112 219 GIWNFTNPG---VVSHNEILEMYRQYIDPN 245 (302)
Q Consensus 219 ~~~~~~~~~---~~s~~e~~~~~~~~~g~~ 245 (302)
++||+++++ .+|+.|+++.+.+.+|++
T Consensus 224 ~~~~i~~~~~~~~~s~~e~~~~~~~~~g~~ 253 (253)
T 1xq6_A 224 KAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253 (253)
T ss_dssp EEEEEEECCTTTSCCCCCHHHHHHTCCCCC
T ss_pred CEEEecCCCcCCCCCHHHHHHHHHHHhCCC
Confidence 599999864 599999999999998864
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=195.93 Aligned_cols=193 Identities=12% Similarity=0.129 Sum_probs=146.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-------------------CCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-------------------RLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-------------------dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
++|+||||||||+||++++++|+++|++|+++.. |++ +.+.+.+. ++|+|||+|+..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~--~~~~~~~~--~~D~vi~~ag~~ 95 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLE--EDFSHAFA--SIDAVVFAAGSG 95 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTT--SCCGGGGT--TCSEEEECCCCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccH--HHHHHHHc--CCCEEEECCCCC
Confidence 4679999999999999999999999999887443 444 44455555 899999999976
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
. ..++...+++|+.++.+++++|++.+++ +|++||...+.. +..+ ++...|+.+|..
T Consensus 96 ~-------~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------------~~~~--~~~~~Y~~sK~~ 153 (236)
T 3e8x_A 96 P-------HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------------DQGP--MNMRHYLVAKRL 153 (236)
T ss_dssp T-------TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------------GGSC--GGGHHHHHHHHH
T ss_pred C-------CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------------CCCh--hhhhhHHHHHHH
Confidence 2 3567889999999999999999998865 899998433321 1111 234799999999
Q ss_pred HHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCcc
Q 022112 153 VEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVV 229 (302)
Q Consensus 153 ~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~ 229 (302)
+|.+++.. .+.+++||++++|+...+.... ........++++++|+|++++.+++++ .+++||++++ .+
T Consensus 154 ~e~~~~~~gi~~~~lrpg~v~~~~~~~~~~~-------~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~v~~~-~~ 225 (236)
T 3e8x_A 154 ADDELKRSSLDYTIVRPGPLSNEESTGKVTV-------SPHFSEITRSITRHDVAKVIAELVDQQHTIGKTFEVLNG-DT 225 (236)
T ss_dssp HHHHHHHSSSEEEEEEECSEECSCCCSEEEE-------ESSCSCCCCCEEHHHHHHHHHHHTTCGGGTTEEEEEEEC-SE
T ss_pred HHHHHHHCCCCEEEEeCCcccCCCCCCeEEe-------ccCCCcccCcEeHHHHHHHHHHHhcCccccCCeEEEeCC-Cc
Confidence 99998754 4559999999999743221110 001123578999999999999999875 3569999887 69
Q ss_pred CHHHHHHHHH
Q 022112 230 SHNEILEMYR 239 (302)
Q Consensus 230 s~~e~~~~~~ 239 (302)
++.|+++.++
T Consensus 226 ~~~e~~~~i~ 235 (236)
T 3e8x_A 226 PIAKVVEQLG 235 (236)
T ss_dssp EHHHHHHTC-
T ss_pred CHHHHHHHhc
Confidence 9999998765
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=191.85 Aligned_cols=195 Identities=10% Similarity=0.020 Sum_probs=138.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|||||||||||||++|+++|+++|++|++ +.+|++|.++ +.+. ++|+|||+|+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~--~~~~--~~d~vi~~ag~~~-- 74 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTE--ADLD--SVDAVVDALSVPW-- 74 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCH--HHHT--TCSEEEECCCCCT--
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccH--hhcc--cCCEEEECCccCC--
Confidence 68999999999999999999999999888 5678887776 6666 8999999999751
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
.. .....|+.++.+++++|++.+.++|++||.+.+....... ..++.|...+.+. +.|+.+|...|.+
T Consensus 75 ----~~----~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~---~~~~~~~~~~~~~-~~y~~sK~~~e~~ 142 (224)
T 3h2s_A 75 ----GS----GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADH---PMILDFPESAASQ-PWYDGALYQYYEY 142 (224)
T ss_dssp ----TS----SCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSS---CGGGGCCGGGGGS-TTHHHHHHHHHHH
T ss_pred ----Cc----chhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCc---cccccCCCCCccc-hhhHHHHHHHHHH
Confidence 10 1235799999999999999987799999986544332100 1234444444434 8999999999965
Q ss_pred HHh----hcCceEEeeecccCCCCCCchhhHHHHhcccc---cccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCC
Q 022112 157 LKN----FENVCTLRVRMPISSDLSNPRNFITKITRYEK---VVNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPG 227 (302)
Q Consensus 157 ~~~----~~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~ 227 (302)
... -.+.+++||+++||+..... + ..... ......++++++|+|++++.+++++ .+++|++++.+
T Consensus 143 ~~~~~~~~i~~~ivrp~~v~g~~~~~~--~----~~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~~~~~ 216 (224)
T 3h2s_A 143 QFLQMNANVNWIGISPSEAFPSGPATS--Y----VAGKDTLLVGEDGQSHITTGNMALAILDQLEHPTAIRDRIVVRDAD 216 (224)
T ss_dssp HHHTTCTTSCEEEEEECSBCCCCCCCC--E----EEESSBCCCCTTSCCBCCHHHHHHHHHHHHHSCCCTTSEEEEEECC
T ss_pred HHHHhcCCCcEEEEcCccccCCCcccC--c----eecccccccCCCCCceEeHHHHHHHHHHHhcCccccCCEEEEecCc
Confidence 322 13449999999999743211 1 11111 1234578999999999999999875 35699999877
Q ss_pred ccCHHH
Q 022112 228 VVSHNE 233 (302)
Q Consensus 228 ~~s~~e 233 (302)
..++.|
T Consensus 217 ~~~~~~ 222 (224)
T 3h2s_A 217 LEHHHH 222 (224)
T ss_dssp ------
T ss_pred chhccc
Confidence 665543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=193.82 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=144.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEe--------------ecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYG--------------SGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~--------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+|+||||||||+||++++++|+++|+ +|+++ .+|+++.+++.+++ +|+|||+|+..
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~----~d~vi~~a~~~--- 76 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS----IDTAFCCLGTT--- 76 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSC----CSEEEECCCCC---
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhh----hcEEEECeeec---
Confidence 467999999999999999999999998 88774 34444444444333 89999999965
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
.....++...+++|+.++.+++++|++.+++ +|++||..+|+. +.+.|+.+|..+|+
T Consensus 77 --~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~--------------------~~~~y~~sK~~~e~ 134 (215)
T 2a35_A 77 --IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--------------------SSIFYNRVKGELEQ 134 (215)
T ss_dssp --HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------------CSSHHHHHHHHHHH
T ss_pred --cccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC--------------------CccHHHHHHHHHHH
Confidence 1234577889999999999999999998875 999999888752 12789999999999
Q ss_pred HHHhh-cC-ceEEeeecccCCCCCCchhhHHHHhccc-ccccccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHH
Q 022112 156 LLKNF-EN-VCTLRVRMPISSDLSNPRNFITKITRYE-KVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHN 232 (302)
Q Consensus 156 ~~~~~-~~-~~~lR~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~ 232 (302)
+++.+ .+ .+++||+++||+... ..++..+.... +......+++|++|+|++++.+++++.+++||+++++.+++.
T Consensus 135 ~~~~~~~~~~~~vrp~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 135 ALQEQGWPQLTIARPSLLFGPREE--FRLAEILAAPIARILPGKYHGIEACDLARALWRLALEEGKGVRFVESDELRKLG 212 (215)
T ss_dssp HHTTSCCSEEEEEECCSEESTTSC--EEGGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEEHHHHHHHH
T ss_pred HHHHcCCCeEEEEeCceeeCCCCc--chHHHHHHHhhhhccCCCcCcEeHHHHHHHHHHHHhcCCCCceEEcHHHHHHhh
Confidence 99876 45 799999999998542 22333322111 111124578999999999999999887889999987766654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=187.15 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=123.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPN 77 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~ 77 (302)
|||||||||||||++++++|+++|++|++ +.+|++|.++ +.+. ++|+|||+|+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~--~~~~--~~d~vi~~ag~~~--- 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTL--SDLS--DQNVVVDAYGISP--- 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCH--HHHT--TCSEEEECCCSST---
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhh--hhhc--CCCEEEECCcCCc---
Confidence 68999999999999999999999999988 4567777766 6666 8999999999751
Q ss_pred cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 78 VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 78 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
. ....|+.++.+++++|++.++ ++|++||..+|..... ..+..|+.+..+. ..|+.+|...|.+
T Consensus 74 ~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~-----~~~~~~~~~~~~~-~~y~~~k~~~e~~ 138 (221)
T 3ew7_A 74 D---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDED-----GNTLLESKGLREA-PYYPTARAQAKQL 138 (221)
T ss_dssp T---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------C-CCSCCHHHHHHHH
T ss_pred c---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCC-----CccccccCCCCCH-HHHHHHHHHHHHH
Confidence 1 135689999999999999865 5999999876543321 2244555555544 7899999999986
Q ss_pred --HHh--h-cCceEEeeecccCCCCCCchhhHHHHhcccc--cccccCCcccHhhHHHHHHHHHhcCC--CCeEEecCCC
Q 022112 157 --LKN--F-ENVCTLRVRMPISSDLSNPRNFITKITRYEK--VVNIPNSMTILDELLPISIEMAKRNL--TGIWNFTNPG 227 (302)
Q Consensus 157 --~~~--~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~~~ 227 (302)
+.. . .+.+++||+++||+.. ....+. ..... ......++++++|+|++++.+++++. +++||++++.
T Consensus 139 ~~~~~~~~gi~~~ivrp~~v~g~~~-~~~~~~---~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~~~~~~~~~ 214 (221)
T 3ew7_A 139 EHLKSHQAEFSWTYISPSAMFEPGE-RTGDYQ---IGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNEHFTVAGKL 214 (221)
T ss_dssp HHHHTTTTTSCEEEEECSSCCCCC-------------------------CCCHHHHHHHHHHHHHSCSCTTSEEECCC--
T ss_pred HHHHhhccCccEEEEeCcceecCCC-ccCceE---eccccceecCCCCceEeHHHHHHHHHHHHhCccccCCEEEECCCC
Confidence 331 1 3459999999999732 111111 11111 11223469999999999999998753 5699999988
Q ss_pred ccCHHH
Q 022112 228 VVSHNE 233 (302)
Q Consensus 228 ~~s~~e 233 (302)
..+..|
T Consensus 215 ~~~~~~ 220 (221)
T 3ew7_A 215 EHHHHH 220 (221)
T ss_dssp ------
T ss_pred cccccc
Confidence 777654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=181.24 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=141.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+|+||||||+|+||++++++|+++|+ +|++ +.+|++|.+++.++++ ++|+|||+|+..
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag~~ 95 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGTT 95 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCCcc
Confidence 46899999999999999999999999 8877 3477888888888887 899999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
. ...++...+++|+.++.++++++++.++ ++|++||..+|+. +...|+.+|..
T Consensus 96 ~------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~--------------------~~~~Y~~sK~~ 149 (242)
T 2bka_A 96 R------GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS--------------------SNFLYLQVKGE 149 (242)
T ss_dssp H------HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------------CSSHHHHHHHH
T ss_pred c------ccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCC--------------------CcchHHHHHHH
Confidence 1 2235678899999999999999999876 5999999887752 12689999999
Q ss_pred HHHHHHhhcC--ceEEeeecccCCCCCCc--hhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC-CeEEecC
Q 022112 153 VEELLKNFEN--VCTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT-GIWNFTN 225 (302)
Q Consensus 153 ~E~~~~~~~~--~~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-~~~~~~~ 225 (302)
.|.+++.+.. ..++||++++|+..... ..+...+....+.......+++++|+|++++.+++++.. +.|++.+
T Consensus 150 ~e~~~~~~~~~~~~~vrpg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~ 227 (242)
T 2bka_A 150 VEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLEN 227 (242)
T ss_dssp HHHHHHTTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCCSSEEEEEH
T ss_pred HHHHHHhcCCCCeEEEcCceecCCCCCCcHHHHHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCccccCeeEeeH
Confidence 9999988743 68999999999743111 112222222222111234689999999999999987644 6666654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=187.37 Aligned_cols=200 Identities=13% Similarity=0.101 Sum_probs=150.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecC-CCChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGR-LENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~d-l~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+|+|||||||||||++|++.|+++|++|++ +.+| ++|++++.++++ ++|+|||+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcCC
Confidence 578999999999999999999999999887 2468 889999999998 8999999987
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEcCCc--cccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L-ILINYATGC--IFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~--vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
... ...|..+ .+++++|++.+ + ++|++||.. .|+. .++ ..|+
T Consensus 83 ~~~--------------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------------------~~~-~~y~ 128 (352)
T 1xgk_A 83 SQA--------------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGP------------------WPA-VPMW 128 (352)
T ss_dssp STT--------------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSS------------------CCC-CTTT
T ss_pred CCC--------------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCC------------------CCC-ccHH
Confidence 431 0235555 89999999998 7 599999875 3321 123 6899
Q ss_pred hhHHHHHHHHHhh-cCceEEeeecccCCCCCCc-hhhHH-H-Hhccccc------ccccCCcccH-hhHHHHHHHHHhcC
Q 022112 148 KTKAMVEELLKNF-ENVCTLRVRMPISSDLSNP-RNFIT-K-ITRYEKV------VNIPNSMTIL-DELLPISIEMAKRN 216 (302)
Q Consensus 148 ~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~-~~~~~-~-~~~~~~~------~~~~~~~i~v-~D~a~~~~~~~~~~ 216 (302)
.+|..+|+++++. .+.+++||+ +||++.... ..++. . ...+... .+...+++|+ +|+|++++.+++++
T Consensus 129 ~sK~~~E~~~~~~gi~~~ivrpg-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~ 207 (352)
T 1xgk_A 129 APKFTVENYVRQLGLPSTFVYAG-IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDG 207 (352)
T ss_dssp HHHHHHHHHHHTSSSCEEEEEEC-EEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEEecc-eecCCchhcccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCC
Confidence 9999999999875 556999976 577654221 11111 1 1122211 1245679999 89999999999864
Q ss_pred ----CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccc
Q 022112 217 ----LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 217 ----~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
.+++||+++ +.+|+.|+++.+.+.+|.+..+..+
T Consensus 208 ~~~~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~v 245 (352)
T 1xgk_A 208 PQKWNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQV 245 (352)
T ss_dssp HHHHTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEEC
T ss_pred chhhCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEEC
Confidence 467999996 7899999999999999988654433
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=185.53 Aligned_cols=207 Identities=15% Similarity=0.161 Sum_probs=150.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
+|+|||||||||||+++++.|+++|++|++ +.+|++|++++.++++ ++|+||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCEEE
Confidence 578999999999999999999999998876 3456778888889988 899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
|+++... . ..|+.++.+++++|++.+ ++.++.| +||... +.+ +.+..|....|
T Consensus 82 ~~a~~~~---~-----------~~~~~~~~~l~~aa~~~g~v~~~v~S---~~g~~~------~~~---~~~~~p~~~~y 135 (313)
T 1qyd_A 82 SALAGGV---L-----------SHHILEQLKLVEAIKEAGNIKRFLPS---EFGMDP------DIM---EHALQPGSITF 135 (313)
T ss_dssp ECCCCSS---S-----------STTTTTHHHHHHHHHHSCCCSEEECS---CCSSCT------TSC---CCCCSSTTHHH
T ss_pred ECCcccc---c-----------hhhHHHHHHHHHHHHhcCCCceEEec---CCcCCc------ccc---ccCCCCCcchH
Confidence 9999662 1 126778899999999998 8744443 466332 111 12223333568
Q ss_pred hhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHH----Hhccccc--c---cccCCcccHhhHHHHHHHHHhcC
Q 022112 147 SKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITK----ITRYEKV--V---NIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 147 ~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~----~~~~~~~--~---~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
.+|..+|++++.. ...+++||+++++... ..+... ...+... . ....+++|++|+|++++.+++++
T Consensus 136 -~sK~~~e~~~~~~g~~~~ilrp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~ 211 (313)
T 1qyd_A 136 -IDKRKVRRAIEAASIPYTYVSSNMFAGYFA---GSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDP 211 (313)
T ss_dssp -HHHHHHHHHHHHTTCCBCEEECCEEHHHHT---TTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred -HHHHHHHHHHHhcCCCeEEEEeceeccccc---cccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCc
Confidence 9999999999765 5679999998877321 111111 0111111 1 23567999999999999999865
Q ss_pred --CCCeEEecCC-CccCHHHHHHHHHhhcCCCCcccccc
Q 022112 217 --LTGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWKNFT 252 (302)
Q Consensus 217 --~~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~~~~ 252 (302)
.++.|++.++ +.+|+.|+++.+.+.+|.+......+
T Consensus 212 ~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 212 QTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp GGSSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred ccCCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 3567888765 78999999999999999886654333
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=182.31 Aligned_cols=211 Identities=11% Similarity=-0.048 Sum_probs=145.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------ecCCCChhhHHHHHhhc--CCCEEEEccccCCCCCcch
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------SGRLENRASLEADIAAV--KPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------~~dl~~~~~~~~~~~~~--~~d~Vi~~a~~~~~~~~~~ 80 (302)
||+||||||+|+||++++++|+++|++|+++ .+|+++.+++.+++++. ++|+|||+|+...
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~------ 74 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVGV------ 74 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCCT------
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCCCC------
Confidence 4589999999999999999999999999984 35677777888887755 8999999999762
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCC-CCCC-CCCCCCCC------CCCCCCchh
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHP-LGSG-IGFKEEDT------PNFVGSFYS 147 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~-~~~~-~~~~e~~~------~~~~~~~Y~ 147 (302)
...++...+++|+.++.++++++.+. + .++|++||..+|+.....+ ..+. ....|+.+ ..++...|+
T Consensus 75 ~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 154 (255)
T 2dkn_A 75 TAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHLAYA 154 (255)
T ss_dssp TSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCcchhHH
Confidence 13457889999999999999988764 3 4699999998886431000 0000 00000000 002336899
Q ss_pred hhHHHHHHHHHhhc--------CceEEeeecccCCCCCCchhhHHHHhccccccc---ccCCcccHhhHHHHHHHHHhcC
Q 022112 148 KTKAMVEELLKNFE--------NVCTLRVRMPISSDLSNPRNFITKITRYEKVVN---IPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 148 ~~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~---~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
.+|...|.+++.+. ...++||++++++.. ..++........... ..+++++++|+|++++.+++.+
T Consensus 155 ~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~ 231 (255)
T 2dkn_A 155 GSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL---QASKADPRYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQ 231 (255)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH---HHHHHCTTTHHHHHSCCCTTSSCBCHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh---hhcccchhhHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCC
Confidence 99999999887653 227899999887521 111111111110000 3457899999999999999764
Q ss_pred ----CCCeEEecCCCccCHHH
Q 022112 217 ----LTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 217 ----~~~~~~~~~~~~~s~~e 233 (302)
.++.|+++++..++++|
T Consensus 232 ~~~~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 232 ASFIHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp GTTCCSCEEEESTTHHHHHCT
T ss_pred cccceeeEEEecCCeEeeeec
Confidence 24599999987777654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=187.27 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=147.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
|+++||||||||+||+++++.|+++|++|++ +.+|++|++++.++++ ++|+|||++
T Consensus 10 m~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a 87 (318)
T 2r6j_A 10 MKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISAL 87 (318)
T ss_dssp CCCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECC
Confidence 4458999999999999999999999999877 4567888889999998 899999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
+.. ++.++.+++++|++.+ ++.++.| +||... .|..+..|....| .+
T Consensus 88 ~~~------------------~~~~~~~l~~aa~~~g~v~~~v~S---~~g~~~----------~~~~~~~p~~~~y-~s 135 (318)
T 2r6j_A 88 AFP------------------QILDQFKILEAIKVAGNIKRFLPS---DFGVEE----------DRINALPPFEALI-ER 135 (318)
T ss_dssp CGG------------------GSTTHHHHHHHHHHHCCCCEEECS---CCSSCT----------TTCCCCHHHHHHH-HH
T ss_pred chh------------------hhHHHHHHHHHHHhcCCCCEEEee---ccccCc----------ccccCCCCcchhH-HH
Confidence 854 0345678999999998 8755444 355321 2222222222468 99
Q ss_pred HHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHh----cccccc-----cccCCcccHhhHHHHHHHHHhcCC--
Q 022112 150 KAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKIT----RYEKVV-----NIPNSMTILDELLPISIEMAKRNL-- 217 (302)
Q Consensus 150 K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~----~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~-- 217 (302)
|..+|++++.. ...+++|++++++. ++..+. ...... ....+++|++|+|++++.+++.+.
T Consensus 136 K~~~e~~~~~~~~~~~~lr~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~ 208 (318)
T 2r6j_A 136 KRMIRRAIEEANIPYTYVSANCFASY-------FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRAL 208 (318)
T ss_dssp HHHHHHHHHHTTCCBEEEECCEEHHH-------HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGT
T ss_pred HHHHHHHHHhcCCCeEEEEcceehhh-------hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCcccc
Confidence 99999999765 56689999887653 233322 222211 235679999999999999998643
Q ss_pred CCeEEecC-CCccCHHHHHHHHHhhcCCCCcccccc
Q 022112 218 TGIWNFTN-PGVVSHNEILEMYRQYIDPNFTWKNFT 252 (302)
Q Consensus 218 ~~~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~ 252 (302)
++.|++.+ ++.+|+.|+++.+.+.+|.+..+..++
T Consensus 209 ~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 209 NRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp TEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred CeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 46788875 478999999999999999887654433
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=167.00 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=136.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
|+||||||||+||++++++|+++|++|++ +.+|++|.+++.++++ ++|+|||+|+...
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-- 79 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRN-- 79 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTT--
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHc--CCCEEEECccCCC--
Confidence 79999999999999999999999999887 4678899999999998 8999999999762
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
. .++ .++|+.++.+++++|++.++ ++|++||..+|+.... .+. +...|+.+|..+|+
T Consensus 80 -~----~~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~-------------~~~-~~~~y~~~K~~~e~ 137 (206)
T 1hdo_A 80 -D----LSP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-------------VPP-RLQAVTDDHIRMHK 137 (206)
T ss_dssp -C----CSC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-------------SCG-GGHHHHHHHHHHHH
T ss_pred -C----CCc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCccc-------------ccc-cchhHHHHHHHHHH
Confidence 1 111 24789999999999999887 4999999998874421 111 23789999999999
Q ss_pred HHHhh-cCceEEeeecccCCCCCCchhhHHHHhccccccccc-CCcccHhhHHHHHHHHHhcC--CCCeEEecCCC
Q 022112 156 LLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIP-NSMTILDELLPISIEMAKRN--LTGIWNFTNPG 227 (302)
Q Consensus 156 ~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~ 227 (302)
+++.. .+.+++||+++..... . ..+...+ .... .+++|++|+|++++.+++++ .+++|+++++.
T Consensus 138 ~~~~~~i~~~~lrp~~~~~~~~-~-~~~~~~~------~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~~~~i~~g~ 205 (206)
T 1hdo_A 138 VLRESGLKYVAVMPPHIGDQPL-T-GAYTVTL------DGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSHQY 205 (206)
T ss_dssp HHHHTCSEEEEECCSEEECCCC-C-SCCEEES------SSCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEECCC
T ss_pred HHHhCCCCEEEEeCCcccCCCC-C-cceEecc------cCCCCCCccCHHHHHHHHHHHhcCccccccceeeeccc
Confidence 98664 4569999999733221 1 1111000 1112 68999999999999999875 34699999864
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-24 Score=183.90 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=146.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---------------------------ecCCCChhhHHHHHhhcCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---------------------------SGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---------------------------~~dl~~~~~~~~~~~~~~~d~V 66 (302)
||+|||||||||||+++++.|+++|++|+++ .+|++|++++.++++ ++|+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCCEE
Confidence 5789999999999999999999999988763 357778888889998 89999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
||+++.. . +.++.+++++|++.+ ++.++.| +||... .|..+..|....
T Consensus 82 i~~a~~~---~---------------~~~~~~l~~aa~~~g~v~~~v~S---~~g~~~----------~~~~~~~p~~~~ 130 (308)
T 1qyc_A 82 ISTVGSL---Q---------------IESQVNIIKAIKEVGTVKRFFPS---EFGNDV----------DNVHAVEPAKSV 130 (308)
T ss_dssp EECCCGG---G---------------SGGGHHHHHHHHHHCCCSEEECS---CCSSCT----------TSCCCCTTHHHH
T ss_pred EECCcch---h---------------hhhHHHHHHHHHhcCCCceEeec---ccccCc----------cccccCCcchhH
Confidence 9999854 0 345678999999998 8755444 355321 222233332356
Q ss_pred hhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhccccc-----ccccCCcccHhhHHHHHHHHHhcC--C
Q 022112 146 YSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKV-----VNIPNSMTILDELLPISIEMAKRN--L 217 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~a~~~~~~~~~~--~ 217 (302)
| .+|..+|++++.. ...+++||+++++........+.......... .....+|+|++|+|++++.+++.+ .
T Consensus 131 y-~sK~~~e~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~ 209 (308)
T 1qyc_A 131 F-EVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTL 209 (308)
T ss_dssp H-HHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGT
T ss_pred H-HHHHHHHHHHHhcCCCeEEEEeceeccccccccccccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCcccc
Confidence 8 9999999998765 56799999988774211000000001111111 123568999999999999998764 3
Q ss_pred CCeEEecCC-CccCHHHHHHHHHhhcCCCCccccc
Q 022112 218 TGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 218 ~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
+++|++.++ +.+|+.|+++.+.+.+|.+......
T Consensus 210 ~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~ 244 (308)
T 1qyc_A 210 NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYV 244 (308)
T ss_dssp TEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEE
T ss_pred CeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeC
Confidence 467888764 7899999999999999988765433
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=180.31 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=146.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe----------------------------ecCCCChhhHHHHHhhcCCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----------------------------SGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~----------------------------~~dl~~~~~~~~~~~~~~~d~ 65 (302)
||+||||||||+||+++++.|+++|++|+++ .+|++|++++.++++ ++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~ 79 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVDI 79 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCCE
Confidence 5789999999999999999999999988763 356778888888888 8999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|||+|+.. . +.++.+++++|++.+ ++.++.| +||... .|..+..|...
T Consensus 80 vi~~a~~~---~---------------~~~~~~l~~aa~~~g~v~~~v~S---~~g~~~----------~~~~~~~p~~~ 128 (307)
T 2gas_A 80 VICAAGRL---L---------------IEDQVKIIKAIKEAGNVKKFFPS---EFGLDV----------DRHDAVEPVRQ 128 (307)
T ss_dssp EEECSSSS---C---------------GGGHHHHHHHHHHHCCCSEEECS---CCSSCT----------TSCCCCTTHHH
T ss_pred EEECCccc---c---------------cccHHHHHHHHHhcCCceEEeec---ccccCc----------ccccCCCcchh
Confidence 99999965 1 345678999999998 8744443 455321 12223333235
Q ss_pred chhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHH---Hhccccc--c---cccCCcccHhhHHHHHHHHHhc
Q 022112 145 FYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITK---ITRYEKV--V---NIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~---~~~~~~~--~---~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.| .+|..+|++++.. ...+++||+++++... +.+... ....... . ....+++|++|+|++++.+++.
T Consensus 129 ~y-~sK~~~e~~~~~~~i~~~~lrp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~ 204 (307)
T 2gas_A 129 VF-EEKASIRRVIEAEGVPYTYLCCHAFTGYFL---RNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAAND 204 (307)
T ss_dssp HH-HHHHHHHHHHHHHTCCBEEEECCEETTTTG---GGTTCTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHHHcCCCeEEEEcceeecccc---ccccccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcC
Confidence 78 9999999998765 5679999999887421 122111 1111111 1 2356799999999999999986
Q ss_pred CC--CCeEEecCC-CccCHHHHHHHHHhhcCCCCccccc
Q 022112 216 NL--TGIWNFTNP-GVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 216 ~~--~~~~~~~~~-~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
+. ++.|++.++ +.+|+.|+++.+.+.+|.+......
T Consensus 205 ~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~ 243 (307)
T 2gas_A 205 PNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYV 243 (307)
T ss_dssp GGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEE
T ss_pred ccccCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeec
Confidence 43 457888764 7899999999999999988665433
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=184.67 Aligned_cols=199 Identities=14% Similarity=0.198 Sum_probs=146.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---------------------------ecCCCChhhHHHHHhhcCCC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---------------------------SGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---------------------------~~dl~~~~~~~~~~~~~~~d 64 (302)
++||+||||||||+||++++++|+++|++|+++ .+|++|.+++.++++ ++|
T Consensus 2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d 79 (321)
T 3c1o_A 2 SHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVD 79 (321)
T ss_dssp --CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred CcccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCC
Confidence 467899999999999999999999999988763 356778888888988 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
+|||+++.. . +.++.+++++|++.+ ++.++.| +||... .|..+..|..
T Consensus 80 ~vi~~a~~~---~---------------~~~~~~l~~aa~~~g~v~~~v~S---~~g~~~----------~~~~~~~p~~ 128 (321)
T 3c1o_A 80 IVISALPFP---M---------------ISSQIHIINAIKAAGNIKRFLPS---DFGCEE----------DRIKPLPPFE 128 (321)
T ss_dssp EEEECCCGG---G---------------SGGGHHHHHHHHHHCCCCEEECS---CCSSCG----------GGCCCCHHHH
T ss_pred EEEECCCcc---c---------------hhhHHHHHHHHHHhCCccEEecc---ccccCc----------cccccCCCcc
Confidence 999999854 0 455678999999998 8744433 455321 1222222223
Q ss_pred CchhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHh-------cccccc-----cccCCcccHhhHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKIT-------RYEKVV-----NIPNSMTILDELLPISI 210 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~i~v~D~a~~~~ 210 (302)
..| .+|..+|++++.. .+.+++||+++++. ++..+. .+.... ....+++|++|+|++++
T Consensus 129 ~~y-~sK~~~e~~~~~~~~~~~~lrp~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 129 SVL-EKKRIIRRAIEAAALPYTYVSANCFGAY-------FVNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHH-HHHHHHHHHHHHHTCCBEEEECCEEHHH-------HHHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHcCCCeEEEEeceeccc-------cccccccccccccccCceEEecCCCcceeEeeHHHHHHHHH
Confidence 578 9999999998765 56799999988763 222221 111111 23567999999999999
Q ss_pred HHHhcC--CCCeEEecC-CCccCHHHHHHHHHhhcCCCCccccc
Q 022112 211 EMAKRN--LTGIWNFTN-PGVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 211 ~~~~~~--~~~~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
.++..+ .+++|++.+ ++.+|+.|+++.+.+.+|.+..+...
T Consensus 201 ~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~ 244 (321)
T 3c1o_A 201 KVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHM 244 (321)
T ss_dssp HHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEE
T ss_pred HHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeC
Confidence 999864 245788876 48999999999999999988665433
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=169.45 Aligned_cols=210 Identities=13% Similarity=0.094 Sum_probs=156.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 95 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDI 95 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 468999999999999999999999998876 457999999888877643 7999
Q ss_pred EEEccccCCC---CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR---PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|||+||.... +.......++...+++|+.++.++++++.+. + .++|++||...|....
T Consensus 96 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~-------------- 161 (278)
T 2bgk_A 96 MFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE-------------- 161 (278)
T ss_dssp EEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT--------------
T ss_pred EEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCC--------------
Confidence 9999996521 1112234577889999999999999988763 3 3599999988775321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc----hhhHHHHhcccccccccCCcccHhhH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP----RNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
. +...|+.+|...|.+++.+.. ..++||++++++..... ..+...+..... .....+++++|+
T Consensus 162 --~-~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dv 236 (278)
T 2bgk_A 162 --G-VSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA--NLKGTLLRAEDV 236 (278)
T ss_dssp --T-SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC--SSCSCCCCHHHH
T ss_pred --C-CCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc--ccccccCCHHHH
Confidence 0 236899999999998876532 27899999998753221 122333322211 123568899999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccCHHHHHHHHHhhc
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
|++++.++... .+..|++.++..+++.|+++.+.+.+
T Consensus 237 a~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 237 ADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSCC
T ss_pred HHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhhc
Confidence 99999988642 24599999999999999999887654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=172.41 Aligned_cols=212 Identities=15% Similarity=0.042 Sum_probs=151.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv 84 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLV 84 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 468999999999999999999999999887 568999999988887755 899999
Q ss_pred EccccCCC-CCcchhhhhHHHHHHHhHHH----HHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGR-PNVDWCESHKVETIRTNVVG----TLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~-~~~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||.... +.......++...+++|+.+ ++.+++.+++.+. ++|++||...+.+ .+
T Consensus 85 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------------~~ 146 (281)
T 3m1a_A 85 NNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS------------------FA 146 (281)
T ss_dssp ECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------------CT
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC------------------CC
Confidence 99997521 11123456778899999999 5555555566554 5999999765432 12
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--------chhhHHHHhccccc--ccccCCcccHh
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--------PRNFITKITRYEKV--VNIPNSMTILD 203 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--------~~~~~~~~~~~~~~--~~~~~~~i~v~ 203 (302)
+...|+.+|...|.+++.+.. ...++|+++.++.... ...+.......... ......+.+++
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (281)
T 3m1a_A 147 GFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSDGSQPGDPA 226 (281)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC-----CBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhccCCCCCCHH
Confidence 347999999999998876532 2778998887654211 11222222221111 11245678999
Q ss_pred hHHHHHHHHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcC
Q 022112 204 ELLPISIEMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYID 243 (302)
Q Consensus 204 D~a~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g 243 (302)
|+|++++.+++.+. ++.|+++++....+.+....+.+.++
T Consensus 227 dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~~ 267 (281)
T 3m1a_A 227 KAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAELT 267 (281)
T ss_dssp HHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHHH
Confidence 99999999998754 56899999877778888877777654
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-22 Score=160.08 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=135.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------eecCCCChhhHHHHHhhc-CCCEEEEccccCCCCC-cchhhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------GSGRLENRASLEADIAAV-KPTHVFNAAGVTGRPN-VDWCES 83 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~~~~-~~~~~~ 83 (302)
.+||+|||||+|+||++++++|+ +|++|++ +.+|+++.+++.++++.. ++|+|||+|+....+. ......
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~ 80 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPE 80 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHH
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHH
Confidence 34689999999999999999999 9999988 468999999999988854 5899999999652111 112335
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh
Q 022112 84 HKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
++...+++|+.++.++++++.+. +.++|++||...+... ++...|+.+|...|.+++.+
T Consensus 81 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~Y~~sK~~~~~~~~~~ 142 (202)
T 3d7l_A 81 KNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPI------------------VQGASAAMANGAVTAFAKSA 142 (202)
T ss_dssp HHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCC------------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCC------------------CccHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999876 5568999987654321 23378999999999998776
Q ss_pred cCc-------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCCC-eEEe
Q 022112 161 ENV-------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTG-IWNF 223 (302)
Q Consensus 161 ~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~-~~~~ 223 (302)
... .++||++++++. ..... ....+++++++|+|++++.++++...| +||+
T Consensus 143 ~~e~~~gi~v~~v~pg~v~~~~--------~~~~~----~~~~~~~~~~~dva~~~~~~~~~~~~G~~~~v 201 (202)
T 3d7l_A 143 AIEMPRGIRINTVSPNVLEESW--------DKLEP----FFEGFLPVPAAKVARAFEKSVFGAQTGESYQV 201 (202)
T ss_dssp TTSCSTTCEEEEEEECCBGGGH--------HHHGG----GSTTCCCBCHHHHHHHHHHHHHSCCCSCEEEE
T ss_pred HHHccCCeEEEEEecCccCCch--------hhhhh----hccccCCCCHHHHHHHHHHhhhccccCceEec
Confidence 422 678888887741 11111 112467899999999999888655444 7876
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=163.88 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=142.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~ 72 (302)
+|++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+|||+|+.
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~ 86 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL 86 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence 468999999999999999999999999887 357899999999988754 58999999996
Q ss_pred CCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 73 TGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
..... ......++...+++|+.++.++++++.+. + .++|++||...|... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~ 148 (244)
T 1cyd_A 87 VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------------PNLIT 148 (244)
T ss_dssp CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------------TTBHH
T ss_pred cCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------------CCcch
Confidence 53111 12234567889999999999999888653 3 469999998776522 23368
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
|+.+|...|.+++.+... ..+||++++++... ....++..+..+. ..+++++++|+|++++.+++
T Consensus 149 Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~~~~l~~ 224 (244)
T 1cyd_A 149 YSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERH----PLRKFAEVEDVVNSILFLLS 224 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHS----TTSSCBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcC----CccCCCCHHHHHHHHHHHhC
Confidence 999999999988765321 67888888875211 1122333333322 23678999999999999997
Q ss_pred cC----CCCeEEecCCCcc
Q 022112 215 RN----LTGIWNFTNPGVV 229 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~~ 229 (302)
.+ .+..+++.++...
T Consensus 225 ~~~~~~~G~~~~v~gG~~~ 243 (244)
T 1cyd_A 225 DRSASTSGGGILVDAGYLA 243 (244)
T ss_dssp GGGTTCCSSEEEESTTGGG
T ss_pred chhhcccCCEEEECCCccC
Confidence 53 2458888877543
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-22 Score=164.73 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=144.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||++++++|+++|++|++ +.+|++|++++.++++.. ++|
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 90 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVD 90 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999877 358999999888877643 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+|||+|+............++...+++|+.++.++++++. +.+. ++|++||...+...
T Consensus 91 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------- 153 (255)
T 1fmc_A 91 ILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN----------------- 153 (255)
T ss_dssp EEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC-----------------
T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC-----------------
Confidence 9999999763211123456778899999999999998885 3344 58889987766522
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
++...|+.+|...|.+++.+.. ..++||+.++++... ....+...+..+.+ ...+.+++|+|+++
T Consensus 154 -~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dva~~~ 228 (255)
T 1fmc_A 154 -INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP----IRRLGQPQDIANAA 228 (255)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS----SCSCBCHHHHHHHH
T ss_pred -CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCC----cccCCCHHHHHHHH
Confidence 2347899999999998866532 167889888875210 12233333333222 24578999999999
Q ss_pred HHHHhcC----CCCeEEecCCCccCH
Q 022112 210 IEMAKRN----LTGIWNFTNPGVVSH 231 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~~s~ 231 (302)
+.++... .+++|++.++...|+
T Consensus 229 ~~l~~~~~~~~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 229 LFLCSPAASWVSGQILTVSGGGVQEL 254 (255)
T ss_dssp HHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred HHHhCCccccCCCcEEEECCceeccC
Confidence 9988653 245999999887764
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=158.06 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=123.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+||+||||||+|+||++|++.|+++| ++|++ +.+|++|++++.++++ ++|+|||+|+..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~ 99 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGE 99 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCST
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCC
Confidence 45689999999999999999999999 88877 5789999999999999 899999999854
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
. . ...+.++++++++.+++ +|++||..+|+...... .++.+... ..+...+..
T Consensus 100 ~---~--------------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~ 153 (236)
T 3qvo_A 100 D---L--------------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKF----VEWNNAVI-----GEPLKPFRR 153 (236)
T ss_dssp T---H--------------HHHHHHHHHHHHHTTCCEEEEECCCCC-------------------------CGGGHHHHH
T ss_pred c---h--------------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCccc----ccchhhcc-----cchHHHHHH
Confidence 1 1 12356899999998874 99999999998643110 11122211 233344555
Q ss_pred HHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC---CCeEEecCCCc
Q 022112 153 VEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL---TGIWNFTNPGV 228 (302)
Q Consensus 153 ~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~---~~~~~~~~~~~ 228 (302)
+|+.++.. .+..++||++++++...... ...........+++.+|+|++++.+++.+. ++.|++++++.
T Consensus 154 ~~~~l~~~gi~~~~vrPg~i~~~~~~~~~-------~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~~~g~~~~i~~~~~ 226 (236)
T 3qvo_A 154 AADAIEASGLEYTILRPAWLTDEDIIDYE-------LTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGT 226 (236)
T ss_dssp HHHHHHTSCSEEEEEEECEEECCSCCCCE-------EECTTSCCSCSEEEHHHHHHHHHHHHHSTTTTTTEEEEEECSSC
T ss_pred HHHHHHHCCCCEEEEeCCcccCCCCcceE-------EeccCCCCCCcEECHHHHHHHHHHHHcCcccccCeeEEecCCCC
Confidence 66666543 45689999999986431110 000001123468999999999999998743 46999998754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=165.91 Aligned_cols=210 Identities=11% Similarity=0.017 Sum_probs=152.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 26 ~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 105 (302)
T 1w6u_A 26 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHP 105 (302)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 457899999888887754 78
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----C-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----G-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+||...... ......++...+++|+.++.++++++.+. + .++|++||...+.+.
T Consensus 106 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------------- 171 (302)
T 1w6u_A 106 NIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-------------- 171 (302)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC--------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC--------------
Confidence 99999999652111 12345577889999999999998887542 2 369999997665421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---ch-hhHHHHhcccccccccCCcccHhh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PR-NFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~-~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
++...|+.+|...+.+++.+.. ..++||++++++.... +. .+...+....+ ...+.+++|
T Consensus 172 ----~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~d 243 (302)
T 1w6u_A 172 ----GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP----CGRLGTVEE 243 (302)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT----TSSCBCHHH
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC----cCCCCCHHH
Confidence 2337899999999998876532 2779999988763211 11 11223322211 235789999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccCHHHHHHHHHhhcCCC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVSHNEILEMYRQYIDPN 245 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~~~~~~~~~g~~ 245 (302)
+|++++.++... .+.+|++.++..+++.++++.+.+..|..
T Consensus 244 va~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g~~ 288 (302)
T 1w6u_A 244 LANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTKEQ 288 (302)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCHHH
T ss_pred HHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhcccc
Confidence 999999988642 24599999999999999888887776543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.3e-21 Score=159.91 Aligned_cols=199 Identities=17% Similarity=0.129 Sum_probs=142.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|++++.+++++. ++|+||
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv 87 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILV 87 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 358999999999999999999999999877 578999999988877754 899999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+||...... .+....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 88 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 149 (259)
T 4e6p_A 88 NNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE------------------ 149 (259)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------------
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC------------------
Confidence 9999763111 12244677888999999999999988643 3469999997665421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc--------cccccCCcccHhh
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK--------VVNIPNSMTILDE 204 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..++|++++++.......++........ .....+.+.+++|
T Consensus 150 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~d 229 (259)
T 4e6p_A 150 ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEAVPFGRMGTAED 229 (259)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhccCCCCCCcCHHH
Confidence 23378999999999988765422 6688888877532111111111111100 0012457889999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|++++.++... .+.+|++.+|..+|
T Consensus 230 va~~v~~L~s~~~~~itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 230 LTGMAIFLASAESDYIVSQTYNVDGGNWMS 259 (259)
T ss_dssp HHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHHHHHHhCCccCCCCCCEEEECcChhcC
Confidence 999999888642 24599999987654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=156.05 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=141.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~ 72 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+|||+|+.
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag~ 86 (244)
T 3d3w_A 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAV 86 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCCC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCcc
Confidence 358999999999999999999999999887 357899999999988754 68999999997
Q ss_pred CCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 73 TGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 73 ~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
.... .......++...+++|+.++.++++++.+. + .++|++||...+... ++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~ 148 (244)
T 3d3w_A 87 ALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------------TNHSV 148 (244)
T ss_dssp CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------------TTBHH
T ss_pred CCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------------CCCch
Confidence 6311 111234567889999999999998888653 3 359999997665421 23378
Q ss_pred hhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 146 YSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
|+.+|...|.+++.+.. ..++||++++++... ....+...+.... ..+.+++++|+|++++.+++
T Consensus 149 Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~~~~l~~ 224 (244)
T 3d3w_A 149 YCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRI----PLGKFAEVEHVVNAILFLLS 224 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTC----TTCSCBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhC----CCCCCcCHHHHHHHHHHHcC
Confidence 99999999998876532 267888888875311 1112222222221 13568899999999999987
Q ss_pred cC----CCCeEEecCCCcc
Q 022112 215 RN----LTGIWNFTNPGVV 229 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~~ 229 (302)
.. .+..|++.++...
T Consensus 225 ~~~~~~~G~~~~v~gG~~~ 243 (244)
T 3d3w_A 225 DRSGMTTGSTLPVEGGFWA 243 (244)
T ss_dssp GGGTTCCSCEEEESTTGGG
T ss_pred ccccCCCCCEEEECCCccC
Confidence 53 2448999887543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.75 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=138.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (278)
T 1spx_A 6 EKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG 85 (278)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999876 246889998888777643
Q ss_pred CCCEEEEccccCCCCC-cch----hhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCcc-ccCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPN-VDW----CESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCI-FEYDSGHPLGSGI 131 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~-~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~v-y~~~~~~~~~~~~ 131 (302)
++|+|||+||....+. ... ...++...+++|+.++.++++++.+. +.++|++||... +.+.
T Consensus 86 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 156 (278)
T 1spx_A 86 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHAT--------- 156 (278)
T ss_dssp CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSSCC---------
T ss_pred CCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccccccCC---------
Confidence 7999999999752110 111 44567889999999999999888654 567999999765 4321
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhc--------CceEEeeecccCCCCCCc----hhh------HHHHhcccccc
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFE--------NVCTLRVRMPISSDLSNP----RNF------ITKITRYEKVV 193 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~--------~~~~lR~~~v~g~~~~~~----~~~------~~~~~~~~~~~ 193 (302)
+....|+.+|...+.+.+.+. ....++|+++..+..... ..+ ...+....
T Consensus 157 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 224 (278)
T 1spx_A 157 ---------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV--- 224 (278)
T ss_dssp ---------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHC---
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcC---
Confidence 233689999999999876643 127789999887632110 011 11111111
Q ss_pred cccCCcccHhhHHHHHHHHHhcC----C-CCeEEecCCCccCHHHHHHHHHhhc
Q 022112 194 NIPNSMTILDELLPISIEMAKRN----L-TGIWNFTNPGVVSHNEILEMYRQYI 242 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~----~-~~~~~~~~~~~~s~~e~~~~~~~~~ 242 (302)
....+.+.+|+|++++.++..+ . +..|++.++..+++.|+++.+.+.+
T Consensus 225 -p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 225 -PAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp -TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC------------
T ss_pred -CCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHHh
Confidence 1245789999999999988642 2 4589999999999999999988764
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.9e-20 Score=152.90 Aligned_cols=194 Identities=11% Similarity=0.105 Sum_probs=141.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~ 74 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++. ++|+|||+||...
T Consensus 29 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~ 108 (260)
T 3un1_A 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFL 108 (260)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
Confidence 57999999999999999999999999887 578999999988887754 8999999999763
Q ss_pred CCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 75 RPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 75 ~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
... .+....++...+++|+.++.++++++. +.+ .++|++||...+... +.++...|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----------------~~~~~~~Y~~ 172 (260)
T 3un1_A 109 AKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM----------------VGMPSALASL 172 (260)
T ss_dssp CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB----------------TTCCCHHHHH
T ss_pred CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC----------------CCCccHHHHH
Confidence 111 123455778899999999999999873 334 358999987665422 1123378999
Q ss_pred hHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--CC
Q 022112 149 TKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--LT 218 (302)
Q Consensus 149 ~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~ 218 (302)
+|...+.+.+.++.. ..++|++++++.. .......+.... ..+.+.+++|+|++++.+.+.. .+
T Consensus 173 sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~--~~~~~~~~~~~~----p~~r~~~~~dva~av~~L~~~~~itG 246 (260)
T 3un1_A 173 TKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMH--PAETHSTLAGLH----PVGRMGEIRDVVDAVLYLEHAGFITG 246 (260)
T ss_dssp HHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTS--CGGGHHHHHTTS----TTSSCBCHHHHHHHHHHHHHCTTCCS
T ss_pred HHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCC--CHHHHHHHhccC----CCCCCcCHHHHHHHHHHhcccCCCCC
Confidence 999999988765322 6788888877633 122222222211 2345778999999999885543 34
Q ss_pred CeEEecCCCccC
Q 022112 219 GIWNFTNPGVVS 230 (302)
Q Consensus 219 ~~~~~~~~~~~s 230 (302)
.++++.+|...+
T Consensus 247 ~~i~vdGG~~~~ 258 (260)
T 3un1_A 247 EILHVDGGQNAG 258 (260)
T ss_dssp CEEEESTTGGGC
T ss_pred cEEEECCCeecc
Confidence 589999886543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=159.65 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=154.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++.
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 90 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHG 90 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999876 357999999988887754
Q ss_pred CCCEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 62 ~~d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
++|++||+||... .+..+....++...+++|+.++.++++++.+. +.++|++||...+...
T Consensus 91 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 158 (281)
T 3svt_A 91 RLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH------------ 158 (281)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC------------
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC------------
Confidence 7999999999632 11122344577889999999999999987653 2369999998766522
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ...+...+.... ....+.+++
T Consensus 159 ------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~----p~~r~~~~~ 228 (281)
T 3svt_A 159 ------RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCT----PLPRQGEVE 228 (281)
T ss_dssp ------TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHC----SSSSCBCHH
T ss_pred ------CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcC----CCCCCCCHH
Confidence 23478999999999998765432 556777766542100 011122221111 134567899
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCCccC-HHHHHHHHHhhcCCCC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPGVVS-HNEILEMYRQYIDPNF 246 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~~~s-~~e~~~~~~~~~g~~~ 246 (302)
|+|++++.++... .+..|++.+|...+ ..|+.+.+.+.+|.+.
T Consensus 229 dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~ 276 (281)
T 3svt_A 229 DVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGRDA 276 (281)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCTTG
T ss_pred HHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCCcc
Confidence 9999999988653 34699999988877 7889999999888764
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=155.84 Aligned_cols=197 Identities=14% Similarity=0.114 Sum_probs=141.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------eecCCCChhhHHHHHhhc----CCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------GSGRLENRASLEADIAAV----KPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------~~~dl~~~~~~~~~~~~~----~~d~Vi~~a~~~~~~ 76 (302)
|+|++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+|||+|+.....
T Consensus 1 ~~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~ 80 (242)
T 1uay_A 1 MERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAE 80 (242)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccccCcc
Confidence 3568999999999999999999999999877 468999999988888754 789999999976311
Q ss_pred Ccc-h----hhhhHHHHHHHhHHHHHHHHHHHHHh----C----C---eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 77 NVD-W----CESHKVETIRTNVVGTLTLADVCRDK----G----L---ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 77 ~~~-~----~~~~~~~~~~~n~~~~~~ll~~~~~~----~----~---~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
... . ...++...+++|+.++.++++++.+. + . ++|++||...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------------ 142 (242)
T 1uay_A 81 KILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ------------------ 142 (242)
T ss_dssp CSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC------------------
T ss_pred cccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC------------------
Confidence 111 1 11267889999999999999988753 1 1 79999998877632
Q ss_pred CCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
++...|+.+|...+.+++.+.. ..++||++++++.... ...+...+....+ ....+.+++|+|++++.
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dva~~~~~ 219 (242)
T 1uay_A 143 IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVP---FPPRLGRPEEYAALVLH 219 (242)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCC---SSCSCCCHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCC---CcccCCCHHHHHHHHHH
Confidence 1337899999999988765432 2778998888753211 1122222222211 12457899999999999
Q ss_pred HHhcC--CCCeEEecCCCccC
Q 022112 212 MAKRN--LTGIWNFTNPGVVS 230 (302)
Q Consensus 212 ~~~~~--~~~~~~~~~~~~~s 230 (302)
++... .+..|++.++..++
T Consensus 220 l~~~~~~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 220 ILENPMLNGEVVRLDGALRMA 240 (242)
T ss_dssp HHHCTTCCSCEEEESTTCCCC
T ss_pred HhcCCCCCCcEEEEcCCeecC
Confidence 98763 34589998876543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=151.49 Aligned_cols=194 Identities=11% Similarity=0.067 Sum_probs=138.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 92 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVD 92 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999999876 467899999888877643 799
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+|+... .+.......++...+++|+.++.++++++.+ .+ .++|++||...+...
T Consensus 93 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 157 (260)
T 3awd_A 93 ILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN--------------- 157 (260)
T ss_dssp EEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------------
T ss_pred EEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC---------------
Confidence 9999999652 0111223456788899999999999988864 23 358888886554321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCC---CchhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+.. +...|+.+|...|.+++.+.. ..++||++++++... ....+...+..+.+ ...+++.+|+|
T Consensus 158 ~~~-~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dva 232 (260)
T 3awd_A 158 RPQ-QQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP----MGRVGQPDEVA 232 (260)
T ss_dssp SSS-CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCT----TSSCBCHHHHH
T ss_pred CCC-CccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCC----cCCCCCHHHHH
Confidence 111 226899999999998866432 278999999886431 01123333332211 24578999999
Q ss_pred HHHHHHHhcC----CCCeEEecCCC
Q 022112 207 PISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
++++.++... .+.+|++.++.
T Consensus 233 ~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 233 SVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhCchhccCCCcEEEECCce
Confidence 9999988642 23489998864
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=153.23 Aligned_cols=193 Identities=14% Similarity=0.046 Sum_probs=141.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS 82 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999999876 568999999988877754 8
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||..... .......++...+++|+.++.++++++ ++.+. ++|++||...+.+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 148 (246)
T 3osu_A 83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN-------------- 148 (246)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC--------------
Confidence 99999999976311 112345677889999999999999998 44443 59999997655421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC----c----eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN----V----CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~----~----~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.++. . ..++|+++..+.... ...+...+....+ ...+.+.+|+|+
T Consensus 149 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p----~~r~~~~~dva~ 220 (246)
T 3osu_A 149 ----PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP----LARFGQDTDIAN 220 (246)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCT----TCSCBCHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCC----CCCCcCHHHHHH
Confidence 2347899999999988766533 1 667888887753321 2234444433222 345678999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.++... .+.+|++.+|.
T Consensus 221 ~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 221 TVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp HHHHHTSGGGTTCCSCEEEESTTS
T ss_pred HHHHHhCccccCCCCCEEEeCCCc
Confidence 999988653 24589998874
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=157.42 Aligned_cols=191 Identities=12% Similarity=0.039 Sum_probs=138.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++||||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 21 ~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T 1ja9_A 21 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGL 100 (274)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 457889998888777643 78
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccc-cCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIF-EYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy-~~~~~~~~~~~~~~~e~~~ 138 (302)
|+|||+|+...... ......++...+++|+.++.++++++.+. +.++|++||...+ .+.
T Consensus 101 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~---------------- 164 (274)
T 1ja9_A 101 DFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI---------------- 164 (274)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC----------------
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC----------------
Confidence 99999999763111 12344567889999999999999998775 4469999998776 321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCC-------------Cc-hhhHHHHhccccccccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLS-------------NP-RNFITKITRYEKVVNIP 196 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~-------------~~-~~~~~~~~~~~~~~~~~ 196 (302)
+....|+.+|...|.+++.+.. ..++||++++++... .. ..+...+..+ ...
T Consensus 165 --~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 238 (274)
T 1ja9_A 165 --PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM----NPL 238 (274)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT----STT
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc----CCC
Confidence 2336899999999998876432 267888887664110 00 1111111111 123
Q ss_pred CCcccHhhHHHHHHHHHhcC----CCCeEEecCC
Q 022112 197 NSMTILDELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
+.+++++|+|++++.++..+ .+.+|++.+|
T Consensus 239 ~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 239 KRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 56899999999999998753 2458999886
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=153.39 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=127.4
Q ss_pred cc-EEEEEcCCcchHHHHHHHHH-hCCCcEEE---------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PL-KFLIYGRTGWIGGLLGKLCQ-AQSIDFTY---------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~-~ilItGatG~iG~~l~~~L~-~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
|| +||||||+|+||++++++|+ +.|++|++ +.+|++|.+++.++++ ++|+|||+|
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~a 81 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGA 81 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcC
Confidence 44 59999999999999999999 89998877 3458888999999998 899999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC-chhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS-FYSK 148 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~-~Y~~ 148 (302)
+.. |+. +.++++++++.++ ++|++||..+|+.... .+.+... +... .|+.
T Consensus 82 g~~------------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~-------~~~~~~~--~~~~~~y~~ 133 (221)
T 3r6d_A 82 MES------------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPV-------ALEKWTF--DNLPISYVQ 133 (221)
T ss_dssp CCC------------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCH-------HHHHHHH--HTSCHHHHH
T ss_pred CCC------------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCc-------ccccccc--cccccHHHH
Confidence 843 223 7889999999887 5999999988874320 0000000 1113 8999
Q ss_pred hHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH--hcC---CCCeEE
Q 022112 149 TKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA--KRN---LTGIWN 222 (302)
Q Consensus 149 ~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~--~~~---~~~~~~ 222 (302)
+|...|.+++.. .+..++||++++++....... ...........+++.+|+|++++.++ +.+ .++.+.
T Consensus 134 ~K~~~e~~~~~~~i~~~~vrpg~v~~~~~~~~~~------~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~ 207 (221)
T 3r6d_A 134 GERQARNVLRESNLNYTILRLTWLYNDPEXTDYE------LIPEGAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIG 207 (221)
T ss_dssp HHHHHHHHHHHSCSEEEEEEECEEECCTTCCCCE------EECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEechhhcCCCCCccee------eccCCccCCCceeeHHHHHHHHHHHHHhcChhhhhcceee
Confidence 999999998764 456899999999862211110 00000112334889999999999999 654 245777
Q ss_pred ecCC
Q 022112 223 FTNP 226 (302)
Q Consensus 223 ~~~~ 226 (302)
++++
T Consensus 208 i~~~ 211 (221)
T 3r6d_A 208 VGEP 211 (221)
T ss_dssp EECT
T ss_pred ecCC
Confidence 7654
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.9e-20 Score=153.63 Aligned_cols=198 Identities=16% Similarity=0.069 Sum_probs=138.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 85 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK 85 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4568999999999999999999999999877 568999999988888755 8
Q ss_pred CCEEEEccccC--C-CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVT--G-RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~--~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|+|||+||.. . .+..+....++...+++|+.++.++++++ ++.+ .++|++||...++..
T Consensus 86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------------ 153 (264)
T 3i4f_A 86 IDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP------------ 153 (264)
T ss_dssp CCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC------------
T ss_pred CCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC------------
Confidence 99999999932 1 01122344577889999999999999988 4444 358898887554311
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+.+....|+.+|...+.+++.++.. ..++|++++++.. ..+................+.+.+|+|
T Consensus 154 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~---~~~~~~~~~~~~~~~p~~r~~~~~dva 226 (264)
T 3i4f_A 154 ----GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMK---EATIQEARQLKEHNTPIGRSGTGEDIA 226 (264)
T ss_dssp ----CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGG---SCCHHHHHHC--------CCCCHHHHH
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccc---hhccHHHHHHHhhcCCCCCCcCHHHHH
Confidence 1123478999999999887665322 6677777766522 112222211111111124567899999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCcc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++++.++... .+.++++.+|-..
T Consensus 227 ~~v~~l~s~~~~~itG~~i~vdGG~~~ 253 (264)
T 3i4f_A 227 RTISFLCEDDSDMITGTIIEVTGAVDV 253 (264)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESCSCCC
T ss_pred HHHHHHcCcccCCCCCcEEEEcCceee
Confidence 9999998753 2458999887554
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-20 Score=154.23 Aligned_cols=194 Identities=15% Similarity=0.082 Sum_probs=126.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh------cCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA------VKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~------~~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++. .++
T Consensus 14 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~i 93 (266)
T 1xq1_A 14 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKL 93 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999998876 45789998888877753 379
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||..... .......++...+++|+.++.++++++ ++.+ .++|++||...+...
T Consensus 94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------- 158 (266)
T 1xq1_A 94 DILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA--------------- 158 (266)
T ss_dssp SEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------------------
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC---------------
Confidence 9999999965210 111245577889999999999999988 3444 469999997765421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc--hhhHHHHhcccccccccCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+.. ..++||++++++..... ..+...+.... ....+.+.+|+|+
T Consensus 159 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 231 (266)
T 1xq1_A 159 ---SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRK----PLGRFGEPEEVSS 231 (266)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------CCGGGGHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 2337899999999998866432 27789999888642111 11111111111 1235789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCcc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+++.++... .+..+++.++...
T Consensus 232 ~~~~l~~~~~~~~~G~~~~v~gG~~~ 257 (266)
T 1xq1_A 232 LVAFLCMPAASYITGQTICVDGGLTV 257 (266)
T ss_dssp HHHHHTSGGGTTCCSCEEECCCCEEE
T ss_pred HHHHHcCccccCccCcEEEEcCCccc
Confidence 999988642 2458999887543
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=152.32 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=135.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc-
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++..
T Consensus 7 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (264)
T 2pd6_A 7 SALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQVQ 86 (264)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHHH
Confidence 458999999999999999999999998876 236888988888777643
Q ss_pred ----CC-CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCC
Q 022112 62 ----KP-THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 62 ----~~-d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~ 129 (302)
++ |+|||+|+...... ......++...+++|+.++.++++++.+. + .++|++||...+.+.
T Consensus 87 ~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 159 (264)
T 2pd6_A 87 ACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN------- 159 (264)
T ss_dssp HHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC-------
T ss_pred HHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC-------
Confidence 44 99999999763111 12245577889999999999999988764 3 369999997654321
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcc
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i 200 (302)
++...|+.+|...+.+++.+.. ..++||++++++.... ...+...+.... ....+.
T Consensus 160 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~ 224 (264)
T 2pd6_A 160 -----------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMI----PMGHLG 224 (264)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC----------CTGGGC----TTCSCB
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHHHHHHHHHhC----CCCCCC
Confidence 2337899999999988766422 2779999998864321 111111111111 123578
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCccCHHHH
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGVVSHNEI 234 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~ 234 (302)
+.+|+|++++.++... .+..+++.++..++...+
T Consensus 225 ~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 225 DPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-------
T ss_pred CHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccccC
Confidence 9999999999988652 245899998877665443
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=149.22 Aligned_cols=192 Identities=14% Similarity=0.059 Sum_probs=137.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI 81 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999998876 357899998888877643 79
Q ss_pred CEEEEccccCCCCC----cchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN----VDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 64 d~Vi~~a~~~~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
|+|||+||....+. ......++...+++|+.++.++++++. +.+. ++|++||...+.+.
T Consensus 82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------ 149 (250)
T 2cfc_A 82 DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF------------ 149 (250)
T ss_dssp CEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred CEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC------------
Confidence 99999999763111 112345678899999999977766654 3344 58999997765421
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+++.+.. ..++||++++++.... ...+...+....+ ...+.+.+
T Consensus 150 ------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 219 (250)
T 2cfc_A 150 ------PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP----QKEIGTAA 219 (250)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCT----TCSCBCHH
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCC----CCCCcCHH
Confidence 2347899999999998866532 2779999998864311 1122233322211 23577999
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
|+|++++.++..+ .+..+++.++.
T Consensus 220 dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 220 QVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp HHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred HHHHHHHHHcCchhhcccCCEEEECCce
Confidence 9999999988753 23488888764
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=151.99 Aligned_cols=196 Identities=11% Similarity=-0.022 Sum_probs=138.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+.+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 92 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV 92 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999999877 357899988887777643 79
Q ss_pred CEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+||... .+..+....++...+++|+.++.++++++. +.+. ++|++||...|...
T Consensus 93 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 158 (260)
T 2zat_A 93 DILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF-------------- 158 (260)
T ss_dssp CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC--------------
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC--------------
Confidence 99999999642 011123445678899999999998888875 3343 59999998776521
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... .......+.. ....+.+.+.+|+
T Consensus 159 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dv 230 (260)
T 2zat_A 159 ----PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKE----SLRIRRLGNPEDC 230 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHH----HHTCSSCBCGGGG
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHh----cCCCCCCCCHHHH
Confidence 23368999999999988765322 567777776542100 0000011100 0123468899999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|++++.++... .+.++++.+|...|
T Consensus 231 a~~v~~l~s~~~~~~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 231 AGIVSFLCSEDASYITGETVVVGGGTASR 259 (260)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred HHHHHHHcCcccCCccCCEEEECCCcccc
Confidence 99999988653 34589999987765
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=151.40 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=137.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~lv 91 (263)
T 3ak4_A 12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLC 91 (263)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999999876 457999999888877644 799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+||...... ......++...+++|+.++.++++++.+. ..++|++||...+.+.
T Consensus 92 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 153 (263)
T 3ak4_A 92 ANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA------------------ 153 (263)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC------------------
T ss_pred ECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC------------------
Confidence 9999753111 12234577889999999999999888653 3569999987654311
Q ss_pred CCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhH-----------HHHhcccccccccCCccc
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFI-----------TKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~ 201 (302)
+....|+.+|...+.+.+.+.. ...+||++++++.. ..+. .............+.+.+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 230 (263)
T 3ak4_A 154 PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQ---EREIIWEAELRGMTPEAVRAEYVSLTPLGRIEE 230 (263)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHH---HHHHHHHHHHHTSCHHHHHHHHHHTCTTCSCBC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhh---hhhccccccccccCcHHHHHHHHhcCCCCCCcC
Confidence 2337899999999988766532 26788888776411 1111 000000000011345889
Q ss_pred HhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 202 LDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 202 v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
.+|+|++++.++... .+.+|++.++..
T Consensus 231 ~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 231 PEDVADVVVFLASDAARFMTGQGINVTGGVR 261 (263)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred HHHHHHHHHHHhCccccCCCCCEEEECcCEe
Confidence 999999999988653 234899988754
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=152.02 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=137.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 7 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 86 (258)
T 3afn_B 7 GKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGGI 86 (258)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 346888888888777644 79
Q ss_pred CEEEEcccc-CCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC------CeEEEEcCCccccCCCCCCCCCCC
Q 022112 64 THVFNAAGV-TGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG------LILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 64 d~Vi~~a~~-~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~------~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
|+|||+|+. ... +.......++...+++|+.++.++++++.+ .+ .++|++||...+...
T Consensus 87 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 157 (258)
T 3afn_B 87 DVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG--------- 157 (258)
T ss_dssp SEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC---------
T ss_pred CEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC---------
Confidence 999999996 310 111223446778899999999998887643 22 468999887655410
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
.++...|+.+|...|.+++.+.. ..++||++++++.... ...+...+..+.+ ...++++
T Consensus 158 --------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~ 225 (258)
T 3afn_B 158 --------GPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIP----MGRFGTA 225 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCT----TCSCBCG
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCHHHHHHHhccCC----CCcCCCH
Confidence 12347899999999998866432 2779999998764321 1233333333221 3468899
Q ss_pred hhHHHHHHHHHhcC-----CCCeEEecCCC
Q 022112 203 DELLPISIEMAKRN-----LTGIWNFTNPG 227 (302)
Q Consensus 203 ~D~a~~~~~~~~~~-----~~~~~~~~~~~ 227 (302)
+|+|++++.++... .+..|++.++.
T Consensus 226 ~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 226 EEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp GGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred HHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 99999999988652 24489998864
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=150.72 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=133.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-CCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-KPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a 70 (302)
..++||||||+|+||+++++.|+++|++|++ ..+|+++.+++.+++++. ++|+|||+|
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~A 92 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCNA 92 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 4578999999999999999999999999887 568899999999888865 799999999
Q ss_pred ccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|..... .......++...+++|+.++.++++++.. .+ .++|++||...+.+. +...
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~ 154 (249)
T 3f9i_A 93 GITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN------------------PGQA 154 (249)
T ss_dssp C-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC------------------SCSH
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC------------------CCCc
Confidence 976311 11234457789999999999999888743 23 369999997765422 2347
Q ss_pred chhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 145 FYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.|+.+|...+.+++.+... ..++|+++..+.... .......+... .....+.+.+|+|++++.++..
T Consensus 155 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~dva~~~~~l~s~ 230 (249)
T 3f9i_A 155 NYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQK----IPLGTYGIPEDVAYAVAFLASN 230 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHHH----CTTCSCBCHHHHHHHHHHHHSG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHhc----CCCCCCcCHHHHHHHHHHHcCC
Confidence 8999999999887665322 667777776542211 11222222221 1245678899999999998875
Q ss_pred C----CCCeEEecCCCc
Q 022112 216 N----LTGIWNFTNPGV 228 (302)
Q Consensus 216 ~----~~~~~~~~~~~~ 228 (302)
. .+..+++.+|..
T Consensus 231 ~~~~~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 231 NASYITGQTLHVNGGML 247 (249)
T ss_dssp GGTTCCSCEEEESTTSS
T ss_pred ccCCccCcEEEECCCEe
Confidence 3 245899988754
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=151.36 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=139.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 86 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGA 86 (263)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 347899999888777644 79
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||..... ..+....++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 87 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 151 (263)
T 3ai3_A 87 DILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL--------------- 151 (263)
T ss_dssp SEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------------
Confidence 9999999975311 11224557788999999999999888753 34 359999998776522
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC------------chhhHHHHhcccccccccC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN------------PRNFITKITRYEKVVNIPN 197 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~------------~~~~~~~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+.+.+... ..+||++++++.... ...+...+.... ...+
T Consensus 152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~ 225 (263)
T 3ai3_A 152 ---WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH---APIK 225 (263)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH---CTTC
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC---CCCC
Confidence 23368999999999988665321 678888887642100 000111111110 1134
Q ss_pred CcccHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 198 SMTILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
.+.+++|+|++++.++... .+..|++.++...+
T Consensus 226 ~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 226 RFASPEELANFFVFLCSERATYSVGSAYFVDGGMLKT 262 (263)
T ss_dssp SCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTCCCC
T ss_pred CCcCHHHHHHHHHHHcCccccCCCCcEEEECCCcccc
Confidence 6889999999999988753 24589999887654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=151.01 Aligned_cols=191 Identities=14% Similarity=0.084 Sum_probs=134.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 7 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 86 (248)
T 2pnf_A 7 GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGI 86 (248)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999998876 356889999888877643 79
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+|+...... ......++...+++|+.++.++++++ ++.+. ++|++||...+.+.
T Consensus 87 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 151 (248)
T 2pnf_A 87 DILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN--------------- 151 (248)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC---------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC---------------
Confidence 99999999763111 12244577889999999997766655 34454 59999987544311
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.+.. ..++||++++++.... ...+...+.... ....+++++|+|++
T Consensus 152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~ 224 (248)
T 2pnf_A 152 ---VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQI----PLGRFGSPEEVANV 224 (248)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC----TTSSCBCHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccHHHHHHHHhcC----CCCCccCHHHHHHH
Confidence 1236899999999988766432 2678888887753211 111212221111 12458899999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
++.++... .+.+|++.++
T Consensus 225 ~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 225 VLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp HHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhCchhhcCCCcEEEeCCC
Confidence 99988652 2458998876
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=150.65 Aligned_cols=191 Identities=16% Similarity=0.061 Sum_probs=135.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. ++|
T Consensus 2 k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 81 (244)
T 1edo_A 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 58999999999999999999999999876 347899999888877653 799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----CC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----GL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+||...... ......++...+++|+.++.++++++.+. +. ++|++||...+.+.
T Consensus 82 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------------- 145 (244)
T 1edo_A 82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN---------------- 145 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------------
T ss_pred EEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC----------------
Confidence 9999999763111 12244577889999999999999888653 43 69999997654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.+.. ..++||++++++.... ...+...+.... ....+.+.+|+|+++
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~~ 219 (244)
T 1edo_A 146 --IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTI----PLGRTGQPENVAGLV 219 (244)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSC----TTCSCBCHHHHHHHH
T ss_pred --CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHHHHhhcC----CCCCCCCHHHHHHHH
Confidence 1237899999999888765432 2678888887642101 111222222111 124578999999999
Q ss_pred HHHHhcC-----CCCeEEecCCC
Q 022112 210 IEMAKRN-----LTGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~-----~~~~~~~~~~~ 227 (302)
+.++..+ .+..|++.++.
T Consensus 220 ~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 220 EFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHhCCCccCCcCCCEEEeCCCc
Confidence 9988432 24588888864
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-19 Score=148.83 Aligned_cols=193 Identities=9% Similarity=-0.022 Sum_probs=135.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.++++.. ++|+|||+|
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA 107 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNA 107 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 47999999999999999999999999887 567999999988877653 799999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
|............++...+++|+.++.++++++... + .++|++||...+.+. +....
T Consensus 108 g~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~~~~ 169 (260)
T 3gem_A 108 SEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS------------------SKHIA 169 (260)
T ss_dssp CCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC------------------SSCHH
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC------------------CCcHh
Confidence 976322223344567789999999999999988542 2 469999997665421 23478
Q ss_pred hhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--
Q 022112 146 YSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
|+.+|...+.+.+.++.. ..++|+.+..+.. ....+...+.... ...-+...+|+|++++.+++..
T Consensus 170 Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~-~~~~~~~~~~~~~----p~~r~~~~edva~~v~~L~~~~~i 244 (260)
T 3gem_A 170 YCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPK-DDAAYRANALAKS----ALGIEPGAEVIYQSLRYLLDSTYV 244 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC----------------C----CSCCCCCTHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCC-CCHHHHHHHHhcC----CCCCCCCHHHHHHHHHHHhhCCCC
Confidence 999999999987665322 5567776654321 1111222222111 1223557899999999988643
Q ss_pred CCCeEEecCCCccC
Q 022112 217 LTGIWNFTNPGVVS 230 (302)
Q Consensus 217 ~~~~~~~~~~~~~s 230 (302)
.+.++++.+|..++
T Consensus 245 tG~~i~vdGG~~~~ 258 (260)
T 3gem_A 245 TGTTLTVNGGRHVK 258 (260)
T ss_dssp CSCEEEESTTTTTC
T ss_pred CCCEEEECCCcccC
Confidence 34589999987665
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=148.75 Aligned_cols=194 Identities=12% Similarity=0.022 Sum_probs=139.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAID 84 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999876 568999999988887754 689
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+||....... .....++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 85 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 148 (247)
T 3lyl_A 85 ILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN---------------- 148 (247)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------------
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC----------------
Confidence 99999997631111 224557788999999999999988754 23 369999997665422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.+... ..++|+++..+..... ......+... ...+.+.+.+|+|+++
T Consensus 149 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~----~~~~~~~~~~dva~~i 222 (247)
T 3lyl_A 149 --PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKSFIATK----IPSGQIGEPKDIAAAV 222 (247)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTT----STTCCCBCHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHHHHhhc----CCCCCCcCHHHHHHHH
Confidence 23478999999888887665322 6677777766432211 1122222111 1235678999999999
Q ss_pred HHHHhcC----CCCeEEecCCCcc
Q 022112 210 IEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+.++... .+..+++.+|..+
T Consensus 223 ~~l~s~~~~~~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 223 AFLASEEAKYITGQTLHVNGGMYM 246 (247)
T ss_dssp HHHHSGGGTTCCSCEEEESTTSSC
T ss_pred HHHhCCCcCCccCCEEEECCCEec
Confidence 9988652 3458999887654
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=149.50 Aligned_cols=193 Identities=10% Similarity=-0.010 Sum_probs=136.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 7 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 86 (261)
T 1gee_A 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKL 86 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 346888888887777644 79
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+|+...... ......++...+++|+.++.++++++.+. ..++|++||...+.+
T Consensus 87 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 151 (261)
T 1gee_A 87 DVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP--------------- 151 (261)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCC---------------
Confidence 99999999763111 12244577889999999999888877653 347999999655431
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
.++...|+.+|...+.+.+.+.. ..++||++++++.... ...+...+.... ....+.+.+|+
T Consensus 152 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dv 224 (261)
T 1gee_A 152 ---WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMI----PMGYIGEPEEI 224 (261)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTC----TTSSCBCHHHH
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcC----CCCCCcCHHHH
Confidence 12347899999998887765432 2778999888752210 011112221111 12457899999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCc
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
|++++.++... .+..+++.++..
T Consensus 225 a~~~~~l~~~~~~~~~G~~~~v~gg~~ 251 (261)
T 1gee_A 225 AAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHhCccccCCCCcEEEEcCCcc
Confidence 99999988642 245888888754
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=150.01 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=127.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhh-cCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAA-VKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~-~~~d~Vi~~a~~~~ 74 (302)
|++|||||+|+||++++++|+++ +|++ +.+|++|++++.+++++ .++|+|||+||...
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~~ 78 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGARALPADLADELEAKALLEEAGPLDLLVHAVGKAG 78 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHHHHHHHCSEEEEEECCCCCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 58999999999999999999988 7766 34799999998888774 36899999999763
Q ss_pred CCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHH
Q 022112 75 RPN-VDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAM 152 (302)
Q Consensus 75 ~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~ 152 (302)
... ......++...+++|+.++.++++++++.+. ++|++||...|.+. ++...|+.+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~------------------~~~~~Y~~sK~a 140 (207)
T 2yut_A 79 RASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQV------------------PGFAAYAAAKGA 140 (207)
T ss_dssp CBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSS------------------TTBHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCC------------------CCcchHHHHHHH
Confidence 110 1224557788999999999999999966554 59999998877532 233789999999
Q ss_pred HHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCCC
Q 022112 153 VEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLT 218 (302)
Q Consensus 153 ~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 218 (302)
.|.+++.+.. ..++||++++++.. .+. ....+.+++++|+|++++.+++++..
T Consensus 141 ~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~-----------~~~--~~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 141 LEAYLEAARKELLREGVHLVLVRLPAVATGLW-----------APL--GGPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG-----------GGG--TSCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhCCEEEEEecCcccCCCc-----------ccc--CCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 9998876532 27788888876521 010 11236789999999999999987544
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-19 Score=150.31 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=133.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 105 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRL 105 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 457999999999999999999999999865 578999999988887754 89
Q ss_pred CEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 64 d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
|+|||+||.... +.......++...+++|+.++.++++++... +.++|++||...+....
T Consensus 106 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 175 (272)
T 4e3z_A 106 DGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA---------- 175 (272)
T ss_dssp CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT----------
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC----------
Confidence 999999997631 1111245677889999999999999888654 23599999987654211
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+++.+... ..++|+++..+.... ...+...+.... ....+.+++
T Consensus 176 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~e 244 (272)
T 4e3z_A 176 -------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSV----PMQRAGMPE 244 (272)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC------------------CC----TTSSCBCHH
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcC----CcCCCcCHH
Confidence 12257999999999987665322 667888877653211 111111111111 123466799
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
|+|++++.++... .+.+|++.+|
T Consensus 245 dvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 245 EVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHhCCccccccCCEEeecCC
Confidence 9999999998653 2458998876
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=147.40 Aligned_cols=196 Identities=13% Similarity=0.173 Sum_probs=138.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv 86 (257)
T 3tpc_A 7 SRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGLV 86 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 358999999999999999999999999876 568999999988877654 899999
Q ss_pred EccccCCCCCc-----chhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNV-----DWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 68 ~~a~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
|+||....... .....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 87 ~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~--------- 157 (257)
T 3tpc_A 87 NCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ--------- 157 (257)
T ss_dssp ECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC---------
T ss_pred ECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC---------
Confidence 99997631111 2334678889999999999999998763 2359999998765522
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+..... ..+...+... ......+.+.
T Consensus 158 ---------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~---~p~~~r~~~~ 225 (257)
T 3tpc_A 158 ---------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAAS---VPFPPRLGRA 225 (257)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC--------------CC---SSSSCSCBCH
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhc---CCCCCCCCCH
Confidence 23378999999999887664322 5678888766532111 1111111111 1112457889
Q ss_pred hhHHHHHHHHHhcC--CCCeEEecCCCccC
Q 022112 203 DELLPISIEMAKRN--LTGIWNFTNPGVVS 230 (302)
Q Consensus 203 ~D~a~~~~~~~~~~--~~~~~~~~~~~~~s 230 (302)
+|+|++++.+++.. .+..+++.+|..++
T Consensus 226 ~dva~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 226 EEYAALVKHICENTMLNGEVIRLDGALRMA 255 (257)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEESTTCCC-
T ss_pred HHHHHHHHHHcccCCcCCcEEEECCCccCC
Confidence 99999999988763 34588998876554
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-19 Score=147.38 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=140.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 90 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKI 90 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999999877 568999999988777654 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++||+||.......+....++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 91 d~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 154 (256)
T 3gaf_A 91 TVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN---------------- 154 (256)
T ss_dssp CEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC----------------
T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC----------------
Confidence 999999997642222345567888999999999999998743 23 369999997655421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+... ....+...+.... ..+.+.+.+|+|++
T Consensus 155 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----p~~r~~~~~dva~~ 228 (256)
T 3gaf_A 155 --VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHT----PLGRLGEAQDIANA 228 (256)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTC----TTSSCBCHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcC----CCCCCCCHHHHHHH
Confidence 23478999999999988765432 44555555432100 0011111121111 13457889999999
Q ss_pred HHHHHhcC----CCCeEEecCCCccCH
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVVSH 231 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~s~ 231 (302)
++.++... .+.++++.+|...++
T Consensus 229 ~~~L~s~~~~~itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 229 ALFLCSPAAAWISGQVLTVSGGGVQEL 255 (256)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTSCCC-
T ss_pred HHHHcCCcccCccCCEEEECCCccccC
Confidence 99988642 345999999877664
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=150.16 Aligned_cols=192 Identities=11% Similarity=0.031 Sum_probs=132.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
|+++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 358999999999999999999999998765 346888988887776532 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHH----HHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLAD----VCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~----~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+||...... ......++...+++|+.++.++++ .+++.+. ++|++||...+.+.
T Consensus 81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------------- 146 (245)
T 2ph3_A 81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN-------------- 146 (245)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC--------------
Confidence 999999999762111 122345678899999999555554 4555554 59999997654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.+.. ..++||++++++.... ...+...+.... ....+++++|+|+
T Consensus 147 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 218 (245)
T 2ph3_A 147 ----PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQI----PAGRFGRPEEVAE 218 (245)
T ss_dssp ----SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTC----TTCSCBCHHHHHH
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 1236899999998888765432 2678888887642111 112222222211 1346789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.++..+ .+..|++.++.
T Consensus 219 ~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 219 AVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp HHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHHHhCcccccccCCEEEECCCC
Confidence 999988653 24588888763
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=145.82 Aligned_cols=192 Identities=15% Similarity=0.113 Sum_probs=140.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
.++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|++
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 89 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV 89 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3468999999999999999999999999887 467999999988877654 89999
Q ss_pred EEccccCCC-CC--cchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGR-PN--VDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 67 i~~a~~~~~-~~--~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
||+|+.... .. .+....++...+++|+.++.++++++ ++.+ .++|++||...+...
T Consensus 90 v~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------------- 153 (271)
T 3tzq_B 90 DNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY---------------- 153 (271)
T ss_dssp EECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC----------------
T ss_pred EECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC----------------
Confidence 999997621 01 12345677889999999999999998 4444 359999997765422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..++|++++.+... ....+...+.... ....+...+|+|++
T Consensus 154 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~~~r~~~p~dvA~~ 227 (271)
T 3tzq_B 154 --DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHH----LAGRIGEPHEIAEL 227 (271)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTS----TTSSCBCHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcC----CCCCCcCHHHHHHH
Confidence 23478999999999988765322 66888888876432 1122233222211 12346789999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
++.++... .+.++++.+|
T Consensus 228 v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 228 VCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp HHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhCcccCCcCCCEEEECCC
Confidence 99988753 2458999887
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=151.66 Aligned_cols=200 Identities=12% Similarity=0.107 Sum_probs=138.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 14 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 93 (265)
T 1h5q_A 14 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPI 93 (265)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999988876 456888988888777642 58
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+|+...... ......++...+++|+.++.++++++.+. + .++|++||...+..... ..
T Consensus 94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----------~~ 163 (265)
T 1h5q_A 94 SGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----------SL 163 (265)
T ss_dssp EEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----------ET
T ss_pred CEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----------cc
Confidence 99999999763111 11244577788999999999999988653 2 46999999776542210 00
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+. .+...|+.+|...+.+++.+.. ..++||++++++.... ...+...+.... ....+.+.+|+|+
T Consensus 164 ~~~-~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 238 (265)
T 1h5q_A 164 NGS-LTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNI----PLNRFAQPEEMTG 238 (265)
T ss_dssp TEE-CSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTC----TTSSCBCGGGGHH
T ss_pred ccc-ccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchhHHHHHHhcC----cccCCCCHHHHHH
Confidence 111 1237899999999998866532 2778888887753211 111222221111 1245789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+++.++... .+..|++.+|..
T Consensus 239 ~~~~l~~~~~~~~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 239 QAILLLSDHATYMTGGEYFIDGGQL 263 (265)
T ss_dssp HHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred HHHhhccCchhcCcCcEEEecCCEe
Confidence 999988652 345899988754
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=147.60 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=138.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 26 ~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 105 (267)
T 4iiu_A 26 SRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGAW 105 (267)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 458999999999999999999999999855 568999999988877654 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH------HhCCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR------DKGLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~------~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+||...... ......++...+++|+.++.++++++. +.+.++|++||...+.+.
T Consensus 106 d~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 171 (267)
T 4iiu_A 106 YGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN-------------- 171 (267)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC--------------
T ss_pred cEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC--------------
Confidence 99999999763111 123456788899999999999999873 233469999987655421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.+... ..++|+++..+...........+....+ ...+.+.+|+|++
T Consensus 172 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p----~~~~~~~edva~~ 243 (267)
T 4iiu_A 172 ----RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIP----MKRMGQAEEVAGL 243 (267)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCCHHHHHHHHHTCT----TCSCBCHHHHHHH
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcccccHHHHHHHHhcCC----CCCCcCHHHHHHH
Confidence 23478999999888776554321 6678888876543322333333333221 2346789999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
++.++... .+.++++.+|
T Consensus 244 ~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 244 ASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp HHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhCCcccCccCCEEEeCCC
Confidence 99988652 2458888775
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-19 Score=144.71 Aligned_cols=195 Identities=10% Similarity=0.031 Sum_probs=141.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee----cCCCChhhHHHHHhhc-CCCEEEEccccCC--CCCcchhhhhHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS----GRLENRASLEADIAAV-KPTHVFNAAGVTG--RPNVDWCESHKV 86 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~----~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~--~~~~~~~~~~~~ 86 (302)
++++|||||+|+||+++++.|+++|++|++.. +|++|++++++++++. ++|++||+||... .+..+....++.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~ 85 (223)
T 3uce_A 6 KTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAK 85 (223)
T ss_dssp CEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHH
Confidence 35799999999999999999999999998854 7999999999888765 7899999999652 111223456778
Q ss_pred HHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc
Q 022112 87 ETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV 163 (302)
Q Consensus 87 ~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~ 163 (302)
..+++|+.++.++++++.+. +.++|++||...+... +....|+.+|...+.+.+.++..
T Consensus 86 ~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------------~~~~~Y~asK~a~~~~~~~la~e 147 (223)
T 3uce_A 86 YAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------------ANTYVKAAINAAIEATTKVLAKE 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------------CCchHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999875 3368999987665421 23478999999999987765332
Q ss_pred ------eEEeeecccCCCCCC-chh----hHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--CCCeEEecCCCccC
Q 022112 164 ------CTLRVRMPISSDLSN-PRN----FITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--LTGIWNFTNPGVVS 230 (302)
Q Consensus 164 ------~~lR~~~v~g~~~~~-~~~----~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s 230 (302)
..++|+++..+.... ... +...+.... ....+.+.+|+|++++.+++.. .+..+++.+|..++
T Consensus 148 ~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dvA~~~~~l~~~~~~tG~~i~vdgG~~~s 223 (223)
T 3uce_A 148 LAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHL----PVGKVGEASDIAMAYLFAIQNSYMTGTVIDVDGGALLG 223 (223)
T ss_dssp HTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHS----TTCSCBCHHHHHHHHHHHHHCTTCCSCEEEESTTGGGC
T ss_pred hcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcC----CCCCccCHHHHHHHHHHHccCCCCCCcEEEecCCeecC
Confidence 456666665542211 111 111121111 2345778999999999988753 34589998876543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=148.97 Aligned_cols=191 Identities=12% Similarity=0.088 Sum_probs=124.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 5 ~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 84 (247)
T 2hq1_A 5 GKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRI 84 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999999999876 346888988888777654 79
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCc-cccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGC-IFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|||+||....+ .......++...+++|+.++.++++++.+ .+. ++|++||.. .|+.
T Consensus 85 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------- 149 (247)
T 2hq1_A 85 DILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN--------------- 149 (247)
T ss_dssp CEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC----------------------
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC---------------
Confidence 9999999976210 01123456678999999998888887754 343 599999864 4431
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+... .+++|+++..+... .+..+...+..+. ....+.+++|+|+
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 221 (247)
T 2hq1_A 150 ----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNI----PLKRFGTPEEVAN 221 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTS----TTSSCBCHHHHHH
T ss_pred ----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhC----CCCCCCCHHHHHH
Confidence 12378999999999988765322 55677666542110 0111222222211 1245789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.++... .+.+|++.++.
T Consensus 222 ~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 222 VVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHHHcCcccccccCcEEEeCCCc
Confidence 999988652 24589998874
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-18 Score=146.24 Aligned_cols=195 Identities=12% Similarity=-0.005 Sum_probs=136.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh------cCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA------VKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~------~~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.++++. .++
T Consensus 9 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i 88 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKL 88 (260)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999876 45799999988877753 379
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||...... ......++...+++|+.++.++++++. +.+ .++|++||...+.+.
T Consensus 89 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 153 (260)
T 2ae2_A 89 NILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV--------------- 153 (260)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC---------------
Confidence 99999999752111 123445778899999999999999884 334 359999997654421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC---CchhhHH---HHhcccccccccCCcccHh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS---NPRNFIT---KITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~---~~~~~~~---~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+.+.+... ..++|+.+..+... ....+.. .+... ...+.+.+.+
T Consensus 154 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 226 (260)
T 2ae2_A 154 ---PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR----CALRRMGEPK 226 (260)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT----STTCSCBCHH
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhc----CCCCCCCCHH
Confidence 23378999999999988765322 55677666543100 0000111 11111 1124578999
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|+|++++.++... .+..+++.+|...+
T Consensus 227 dvA~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 227 ELAAMVAFLCFPAASYVTGQIIYVDGGLMAN 257 (260)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHHcCccccCCCCCEEEECCCcccc
Confidence 9999999988642 24588998875543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=146.14 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=137.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+||
T Consensus 12 ~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li 91 (265)
T 2o23_A 12 GLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVAV 91 (265)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence 468999999999999999999999999876 467999999888877644 799999
Q ss_pred EccccCCCCCc-------chhhhhHHHHHHHhHHHHHHHHHHHHHh----------CC-eEEEEcCCccccCCCCCCCCC
Q 022112 68 NAAGVTGRPNV-------DWCESHKVETIRTNVVGTLTLADVCRDK----------GL-ILINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 68 ~~a~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------~~-~~v~~SS~~vy~~~~~~~~~~ 129 (302)
|+||....+.. .....++...+++|+.++.++++++.+. +. ++|++||...+...
T Consensus 92 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 164 (265)
T 2o23_A 92 NCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQ------- 164 (265)
T ss_dssp ECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-------
T ss_pred ECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCC-------
Confidence 99997631111 1245577889999999999999998764 33 48999998766522
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcc
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i 200 (302)
+....|+.+|...+.+++.+.. ...++|+++..+.... +..+...+... ......+.
T Consensus 165 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---~~~~~~~~ 230 (265)
T 2o23_A 165 -----------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQ---VPFPSRLG 230 (265)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC----------CHHHHT---CSSSCSCB
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHHHHHHHc---CCCcCCCC
Confidence 2337899999999888765432 1667888876642211 01111111111 11124578
Q ss_pred cHhhHHHHHHHHHhcC--CCCeEEecCCCcc
Q 022112 201 ILDELLPISIEMAKRN--LTGIWNFTNPGVV 229 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~ 229 (302)
+.+|+|++++.+++.. .+..+++.++..+
T Consensus 231 ~~~dva~~~~~l~~~~~~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 231 DPAEYAHLVQAIIENPFLNGEVIRLDGAIRM 261 (265)
T ss_dssp CHHHHHHHHHHHHHCTTCCSCEEEESTTCCC
T ss_pred CHHHHHHHHHHHhhcCccCceEEEECCCEec
Confidence 9999999999988753 3458888887543
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-19 Score=151.03 Aligned_cols=203 Identities=10% Similarity=-0.004 Sum_probs=134.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-CCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-KPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~ 71 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+|||+||
T Consensus 16 gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~nAg 95 (291)
T 3rd5_A 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINNAG 95 (291)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEECCC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEECCc
Confidence 468999999999999999999999999887 568999999999999866 7899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
.... .......++...+++|+.++.++++++..... ++|++||...+..... .....++..+.++...|+.+|
T Consensus 96 ~~~~-~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~-----~~~~~~~~~~~~~~~~Y~~sK 169 (291)
T 3rd5_A 96 IMAV-PYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRIN-----LEDLNWRSRRYSPWLAYSQSK 169 (291)
T ss_dssp CCSC-CCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCC-----SSCTTCSSSCCCHHHHHHHHH
T ss_pred CCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCC-----cccccccccCCCCcchHHHHH
Confidence 7631 12234567788999999999999999988654 5999999877653221 111122222223346899999
Q ss_pred HHHHHHHHhhcCc----------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC-CC
Q 022112 151 AMVEELLKNFENV----------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-LT 218 (302)
Q Consensus 151 ~~~E~~~~~~~~~----------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-~~ 218 (302)
...+.+.+.++.. ..++|+.+..+-.... ..+...+.. ....+-....+|+|++++.++..+ ..
T Consensus 170 ~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~l~~~~~~~ 245 (291)
T 3rd5_A 170 LANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMS----AATRVVATDADFGARQTLYAASQDLPG 245 (291)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC------------------------CHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHHHHHHHH----HHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 9999887665322 3455666544321110 011111110 111222345899999999988764 33
Q ss_pred C-eEEecCC
Q 022112 219 G-IWNFTNP 226 (302)
Q Consensus 219 ~-~~~~~~~ 226 (302)
| .+++.+|
T Consensus 246 G~~~~vdgG 254 (291)
T 3rd5_A 246 DSFVGPRFG 254 (291)
T ss_dssp TCEEEETTS
T ss_pred CceeCCccc
Confidence 4 5555543
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-19 Score=146.47 Aligned_cols=194 Identities=13% Similarity=0.094 Sum_probs=135.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhh----cCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAA----VKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~----~~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++. .++|+||
T Consensus 11 ~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~li 90 (254)
T 2wsb_A 11 GACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSILV 90 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEEE
Confidence 458999999999999999999999998876 35789999988877754 3799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||....+. ......+....+++|+.++.++++++. +.+. ++|++||...+.... ..
T Consensus 91 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~---------------~~- 154 (254)
T 2wsb_A 91 NSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNR---------------PQ- 154 (254)
T ss_dssp ECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCS---------------SS-
T ss_pred ECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCC---------------CC-
Confidence 9999763111 112344667889999999777777653 4443 599999987654221 11
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+...|+.+|...|.+++.+.. ..++||++++++.... ...+...+.... ..+.+.+++|+|++++
T Consensus 155 ~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~~~~ 230 (254)
T 2wsb_A 155 FASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMT----PMGRCGEPSEIAAAAL 230 (254)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTS----TTSSCBCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcC----CCCCCCCHHHHHHHHH
Confidence 226899999999998866432 2778998887752100 011222222211 1245789999999999
Q ss_pred HHHhcC----CCCeEEecCCC
Q 022112 211 EMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~~ 227 (302)
.++... .+..+++.++.
T Consensus 231 ~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 231 FLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp HHHSGGGTTCCSCEEEESTTG
T ss_pred HHhCcccccccCCEEEECCCE
Confidence 988642 24588888763
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-18 Score=145.77 Aligned_cols=195 Identities=17% Similarity=0.154 Sum_probs=136.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++..+++.. ++|++||+||....
T Consensus 28 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~ 107 (266)
T 3uxy_A 28 GKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISR 107 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 358999999999999999999999999988 367899988887766543 89999999997631
Q ss_pred CC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 76 PN-VDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 76 ~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
.. ......++...+++|+.++.++++++ ++.+ .++|++||...+... +....|+.+
T Consensus 108 ~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~as 169 (266)
T 3uxy_A 108 GRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPG------------------PGHALYCLT 169 (266)
T ss_dssp BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCC------------------TTBHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC------------------CCChHHHHH
Confidence 11 12244577888999999999999998 4433 369999997655321 234789999
Q ss_pred HHHHHHHHHhhcCc--------eEEeeecccCCCCC--------CchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 150 KAMVEELLKNFENV--------CTLRVRMPISSDLS--------NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 150 K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
|...+.+.+.++.. ..++|+++..+... ........+... ...+.+.+.+|+|++++.++
T Consensus 170 Kaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r~~~pedvA~~v~~L~ 245 (266)
T 3uxy_A 170 KAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT----VPLGRIAEPEDIADVVLFLA 245 (266)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTT----STTSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhc----CCCCCCcCHHHHHHHHHHHh
Confidence 99999988765432 55666666543100 000001111111 11345778999999999988
Q ss_pred hcC----CCCeEEecCCCccC
Q 022112 214 KRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 214 ~~~----~~~~~~~~~~~~~s 230 (302)
... .+.++++.+|..++
T Consensus 246 s~~~~~itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 246 SDAARYLCGSLVEVNGGKAVA 266 (266)
T ss_dssp SGGGTTCCSCEEEESTTCCCC
T ss_pred CchhcCCcCCEEEECcCEeCC
Confidence 753 24589998886653
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-19 Score=146.73 Aligned_cols=194 Identities=10% Similarity=0.029 Sum_probs=138.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRL 83 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999876 568999999988887754 88
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||..... .......++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------------- 148 (258)
T 3oid_A 84 DVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL--------------- 148 (258)
T ss_dssp CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCC---------------
Confidence 9999999965311 11234456788999999999999988843 23 369999997655421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ...+...+.... ....+.+.+|+|
T Consensus 149 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~~~dva 221 (258)
T 3oid_A 149 ---ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNT----PAGRMVEIKDMV 221 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHC----TTSSCBCHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcC----CCCCCcCHHHHH
Confidence 23478999999999988765432 456666665432110 011222222211 134578899999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCcc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++++.++... .+.++++.+|...
T Consensus 222 ~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 222 DTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp HHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred HHHHHHhCcccCCccCCEEEECCCccC
Confidence 9999988753 2458999887554
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=149.33 Aligned_cols=198 Identities=10% Similarity=0.016 Sum_probs=140.6
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+ |+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 87 (261)
T 2wyu_A 8 GKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGGL 87 (261)
T ss_dssp TCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999 99999999999999999876 347899998888777644 78
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|+|||+||.... +.......++...+++|+.++.++++++.+. +.++|++||...+...
T Consensus 88 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------- 154 (261)
T 2wyu_A 88 DYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------------- 154 (261)
T ss_dssp EEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------------
T ss_pred CEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC-------------
Confidence 999999997520 0112345677889999999999999999875 3469999996654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++. ...++|++++++..... ..+...+....+ ...+.+++|
T Consensus 155 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~d 225 (261)
T 2wyu_A 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP----LRRNITQEE 225 (261)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHST----TSSCCCHHH
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCC----CCCCCCHHH
Confidence 2336899999999998766432 16788888877532111 112222222111 234678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccCHHH
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e 233 (302)
+|++++.++... .+..|++.++...+..|
T Consensus 226 va~~v~~l~s~~~~~~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 226 VGNLGLFLLSPLASGITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGGBC--
T ss_pred HHHHHHHHcChhhcCCCCCEEEECCCccccCCC
Confidence 999999988642 24589999886665443
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=147.10 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=141.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------------eecCCCChhhHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENRASLEAD 57 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~~~ 57 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++
T Consensus 10 ~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 89 (281)
T 3s55_A 10 GKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESF 89 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 468999999999999999999999998875 35689999988887
Q ss_pred Hhhc-----CCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCC
Q 022112 58 IAAV-----KPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHP 126 (302)
Q Consensus 58 ~~~~-----~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~ 126 (302)
+++. ++|++||+||..... ..+....++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 165 (281)
T 3s55_A 90 VAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSAN---- 165 (281)
T ss_dssp HHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCC----
Confidence 7654 899999999976311 12234567788999999999999998643 33 469999997665422
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCch---hhHHHHhccc-----
Q 022112 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPR---NFITKITRYE----- 190 (302)
Q Consensus 127 ~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~---~~~~~~~~~~----- 190 (302)
+....|+.+|...+.+.+.++.. ..++|++++.+...... .+...+....
T Consensus 166 --------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T 3s55_A 166 --------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVE 231 (281)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHH
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHH
Confidence 23478999999999988765331 67888888876432110 0111000000
Q ss_pred ----ccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 191 ----KVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 191 ----~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
......+.+.+.+|+|++++.++... .+.++++.+|...+
T Consensus 232 ~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 232 SVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred HHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccC
Confidence 00112367899999999999998753 24589999987654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=147.11 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=139.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 85 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRID 85 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999877 568999999988877654 899
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH-----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD-----K-GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||.... +..+....++...+++|+.++.++++++.. . +.++|++||...+...
T Consensus 86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 150 (257)
T 3imf_A 86 ILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG--------------- 150 (257)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC---------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC---------------
Confidence 99999996531 111234557788999999999999998832 2 3469999997655421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC---------ceEEeeecccCCCCCCc----hhhHHHHhcccccccccCCcccHhh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN---------VCTLRVRMPISSDLSNP----RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~---------~~~lR~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++. ...++|+.+..+..... ..+...+.... ....+...+|
T Consensus 151 ---~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----p~~r~~~ped 223 (257)
T 3imf_A 151 ---PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV----PLGRLGTPEE 223 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS----TTCSCBCHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC----CCCCCcCHHH
Confidence 2347899999999988765431 15677888776532111 11111111111 1235778999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|++++.++... .+..+++.+|..++
T Consensus 224 vA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 224 IAGLAYYLCSDEAAYINGTCMTMDGGQHLH 253 (257)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTTTSC
T ss_pred HHHHHHHHcCchhcCccCCEEEECCCcccC
Confidence 999999988653 34589998886654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=149.32 Aligned_cols=195 Identities=11% Similarity=0.036 Sum_probs=136.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 107 (270)
T 3ftp_A 28 KQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALN 107 (270)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence 358999999999999999999999999886 568999999988877654 799
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+||..... .......++...+++|+.++.++++++.. . +.++|++||...+...
T Consensus 108 ~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 171 (270)
T 3ftp_A 108 VLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGN---------------- 171 (270)
T ss_dssp EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------------
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC----------------
Confidence 999999976311 11234567788999999999999998853 2 3469999997655422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+... ........+... .....+.+.+|+|+++
T Consensus 172 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~----~p~~r~~~pedvA~~v 245 (270)
T 3ftp_A 172 --PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQ----IPLGRLGSPEDIAHAV 245 (270)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTT----CTTCSCBCHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhc----CCCCCCCCHHHHHHHH
Confidence 23378999999998887665332 44556555432100 001111111111 1134577899999999
Q ss_pred HHHHhcC----CCCeEEecCCCccC
Q 022112 210 IEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+.++... .+.++++.+|..+|
T Consensus 246 ~~L~s~~~~~itG~~i~vdGG~~~s 270 (270)
T 3ftp_A 246 AFLASPQAGYITGTTLHVNGGMFMS 270 (270)
T ss_dssp HHHHSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHhCCCcCCccCcEEEECCCcccC
Confidence 9988642 34589998876543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=148.01 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=113.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 88 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGID 88 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999877 568999999988887754 899
Q ss_pred EEEEccccCCC----CCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR----PNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 65 ~Vi~~a~~~~~----~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|||+||.... +.......++...+++|+.++.++.+++ ++.+ .++|++||...|.
T Consensus 89 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 153 (253)
T 3qiv_A 89 YLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL--------------- 153 (253)
T ss_dssp EEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--------------------
T ss_pred EEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC---------------
Confidence 99999997310 0012244567889999999976666655 3333 3599999977653
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
....|+.+|...+.+++.+... ..++|++++.+.... +..+...+..+.+ ...+...+|+
T Consensus 154 ------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dv 223 (253)
T 3qiv_A 154 ------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLP----LSRMGTPDDL 223 (253)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-----------------------------------CCHH
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCC----CCCCCCHHHH
Confidence 1257999999999887665322 567777776653211 1122222222111 2345678999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|++++.++... .+.+|++.+|..++
T Consensus 224 a~~~~~l~s~~~~~~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 224 VGMCLFLLSDEASWITGQIFNVDGGQIIR 252 (253)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEC-------
T ss_pred HHHHHHHcCccccCCCCCEEEECCCeecC
Confidence 99999988653 34699999886553
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=145.81 Aligned_cols=189 Identities=14% Similarity=0.082 Sum_probs=135.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv 86 (260)
T 1nff_A 7 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLV 86 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999999876 468999999888877643 799999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||....+ .......++...+++|+.++.++++++ ++.+. ++|++||...+.+. +
T Consensus 87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~ 148 (260)
T 1nff_A 87 NNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------------------V 148 (260)
T ss_dssp ECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------T
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC------------------C
Confidence 999976311 112244577889999999996665554 44443 59999998765421 2
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhccccc-ccccCCcccHhhHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKV-VNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~~ 212 (302)
....|+.+|...+.+.+.++. ...+||++++++... + ..... ......+.+.+|+|++++.+
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~----~-----~~~~~~~~~~~~~~~~~dvA~~v~~l 219 (260)
T 1nff_A 149 ACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD----W-----VPEDIFQTALGRAAEPVEVSNLVVYL 219 (260)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT----T-----SCTTCSCCSSSSCBCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc----c-----chhhHHhCccCCCCCHHHHHHHHHHH
Confidence 336899999999998766432 267888888875321 0 00000 01124578899999999998
Q ss_pred HhcC----CCCeEEecCCCcc
Q 022112 213 AKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~~~~ 229 (302)
+... .+..|++.++...
T Consensus 220 ~s~~~~~~~G~~~~v~gG~~~ 240 (260)
T 1nff_A 220 ASDESSYSTGAEFVVDGGTVA 240 (260)
T ss_dssp HSGGGTTCCSCEEEESTTGGG
T ss_pred hCccccCCcCCEEEECCCeec
Confidence 8652 2458999887543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-18 Score=143.63 Aligned_cols=197 Identities=13% Similarity=0.039 Sum_probs=130.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~ 74 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+|||+||...
T Consensus 7 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~~Ag~~~ 86 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILR 86 (250)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSSCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhhcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 468999999999999999999999999876 457999999988887653 7999999999753
Q ss_pred CC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHh-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 75 RP-NVDWCESHKVETIRTNVVGTLTLADVC----RDK-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
.. ..+....++...+++|+.++.++++++ ++. ..++|++||...+.+. +....|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~~ 148 (250)
T 2fwm_X 87 MGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR------------------IGMSAYGA 148 (250)
T ss_dssp CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------------TTCHHHHH
T ss_pred CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC------------------CCCchHHH
Confidence 11 112245678889999999999999988 333 3469999997665421 23478999
Q ss_pred hHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHH-HHhccc-cc--ccccCCcccHhhHHHHHHHHH
Q 022112 149 TKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFIT-KITRYE-KV--VNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 149 ~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~-~~~~~~-~~--~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+|...+.+.+.+.. ...++|++++++.... ...+.. .+.... .. ......+.+.+|+|++++.++
T Consensus 149 sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~ 228 (250)
T 2fwm_X 149 SKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLA 228 (250)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHHh
Confidence 99999998766532 2778888887753211 001111 111100 00 001124678999999999988
Q ss_pred hcC----CCCeEEecCCCc
Q 022112 214 KRN----LTGIWNFTNPGV 228 (302)
Q Consensus 214 ~~~----~~~~~~~~~~~~ 228 (302)
... .+..+++.++..
T Consensus 229 s~~~~~~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 229 SDLASHITLQDIVVDGGST 247 (250)
T ss_dssp SGGGTTCCSCEEEESTTTT
T ss_pred CccccCCCCCEEEECCCcc
Confidence 653 244888887754
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=146.64 Aligned_cols=195 Identities=11% Similarity=-0.005 Sum_probs=136.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhhc-----CCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~ 73 (302)
..++||||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++||+||..
T Consensus 13 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 92 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIE 92 (269)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 4679999999999999999999999999887 568999999988887654 899999999976
Q ss_pred CCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 74 GRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 74 ~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
..... .....++...+++|+.++.++++++.. .+ .++|++||...+... +....|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~ 154 (269)
T 3vtz_A 93 QYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT------------------KNAAAYV 154 (269)
T ss_dssp CCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC------------------TTCHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC------------------CCChhHH
Confidence 31111 123456678899999999999988754 23 369999998776532 2337899
Q ss_pred hhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHH-----------HHhcccccccccCCcccHhhHHHHH
Q 022112 148 KTKAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFIT-----------KITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.+|...+.+.+.++.. ..++|+++..+.. ..... ............+.+.+.+|+|+++
T Consensus 155 asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v 231 (269)
T 3vtz_A 155 TSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMV---IKAAKMEVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVV 231 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHH---HHHHHHHHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcch---hhhhhccccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 9999999988765322 4455665544210 00100 0000000001234577899999999
Q ss_pred HHHHhcC----CCCeEEecCCCc
Q 022112 210 IEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~ 228 (302)
+.++... .+.++++.+|..
T Consensus 232 ~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 232 AFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp HHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHhCCccCCCcCcEEEECCCcc
Confidence 9988753 345899988754
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=146.27 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=139.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++. ++
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 89 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGI 89 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999998876 568999999988777654 89
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||.... +..+....++...+++|+.++.++++++.+. + .++|++||...+-
T Consensus 90 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~----------------- 152 (262)
T 3pk0_A 90 DVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPI----------------- 152 (262)
T ss_dssp SEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTT-----------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcc-----------------
Confidence 999999997631 1122345677889999999999999888654 3 4699999865421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
.+.+....|+.+|...+.+.+.++.. ..++|++++.+... ....+...+....+ ...+...+|+|++
T Consensus 153 ~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p----~~r~~~p~dva~~ 228 (262)
T 3pk0_A 153 TGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP----AGALGTPEDIGHL 228 (262)
T ss_dssp BCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTST----TSSCBCHHHHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCC----CCCCcCHHHHHHH
Confidence 01123478999999999988765322 56778877664210 11223333322211 2346789999999
Q ss_pred HHHHHhcC----CCCeEEecCCCcc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++.++... .+..+++.+|..+
T Consensus 229 v~~L~s~~~~~itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 229 AAFLATKEAGYITGQAIAVDGGQVL 253 (262)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred HHHHhCccccCCcCCEEEECCCeec
Confidence 99988653 3458999887654
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=9e-19 Score=145.71 Aligned_cols=188 Identities=14% Similarity=0.049 Sum_probs=127.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEE---------------------eecCCCChhhHHHHHhhc-------CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY---------------------GSGRLENRASLEADIAAV-------KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~---------------------~~~dl~~~~~~~~~~~~~-------~~ 63 (302)
++++|||||+|+||+++++.|+++| ++|++ +.+|+++.+++.+++++. ++
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~i 82 (250)
T 1yo6_A 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL 82 (250)
T ss_dssp CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCCC
Confidence 4689999999999999999999999 88776 457899998888877654 79
Q ss_pred CEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----------------CCeEEEEcCCccccCCCCC
Q 022112 64 THVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK----------------GLILINYATGCIFEYDSGH 125 (302)
Q Consensus 64 d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------------~~~~v~~SS~~vy~~~~~~ 125 (302)
|+|||+||... .+.......++...+++|+.++.++++++... ..++|++||...+....
T Consensus 83 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~-- 160 (250)
T 1yo6_A 83 SLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDN-- 160 (250)
T ss_dssp CEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTC--
T ss_pred cEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCc--
Confidence 99999999762 01122345677889999999999998887543 35699999986654221
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccC
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPN 197 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~ 197 (302)
.+ ..+.++...|+.+|...+.+++.+... ..++|+++..+.. . ..
T Consensus 161 --------~~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------~-----------~~ 213 (250)
T 1yo6_A 161 --------TS-GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG-------G-----------KN 213 (250)
T ss_dssp --------CS-TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------------
T ss_pred --------cc-ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCC-------C-----------CC
Confidence 01 112234478999999999988665322 5566666544311 0 01
Q ss_pred CcccHhhHHHHHHHHHhcC---CCCeEEecCCCccC
Q 022112 198 SMTILDELLPISIEMAKRN---LTGIWNFTNPGVVS 230 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~---~~~~~~~~~~~~~s 230 (302)
.+++.+|+|++++.++... ..|.|...++..++
T Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~~ 249 (250)
T 1yo6_A 214 AALTVEQSTAELISSFNKLDNSHNGRFFMRNLKPYE 249 (250)
T ss_dssp -----HHHHHHHHHHHTTCCGGGTTCEEETTEEECC
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCeEEEECCcCCC
Confidence 3568999999999999764 34655544444443
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=144.06 Aligned_cols=195 Identities=14% Similarity=0.039 Sum_probs=137.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 32 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD 111 (276)
T 3r1i_A 32 GKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGID 111 (276)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 368999999999999999999999999887 568999999988887754 899
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||....... +....++...+++|+.++.++++++... + .++|++||...+....
T Consensus 112 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~-------------- 177 (276)
T 3r1i_A 112 IAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI-------------- 177 (276)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC--------------
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC--------------
Confidence 99999997631111 2234567788899999999999887543 2 4689998876543210
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+ +....|+.+|...+.+.+.++.. ..++|+++..+.......+...+.... ....+...+|+|+++
T Consensus 178 -~-~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~----p~~r~~~pedvA~~v 251 (276)
T 3r1i_A 178 -P-QQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLADYHALWEPKI----PLGRMGRPEELTGLY 251 (276)
T ss_dssp -S-SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGGGHHHHGGGS----TTSSCBCGGGSHHHH
T ss_pred -C-CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchHHHHHHHhcC----CCCCCcCHHHHHHHH
Confidence 1 12368999999999988765432 556777776543211122222222211 123467899999999
Q ss_pred HHHHhcC----CCCeEEecCCCc
Q 022112 210 IEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~ 228 (302)
+.++... .+.++++.+|..
T Consensus 252 ~fL~s~~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 252 LYLASAASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp HHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHcCccccCccCcEEEECcCcc
Confidence 9988752 245888887653
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=147.77 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=135.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~id 123 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVD 123 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999998876 457899999888877643 799
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+||....+ .......++...+++|+.++.++++++. +.+ .++|++||...+.+.
T Consensus 124 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 187 (285)
T 2c07_A 124 ILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN---------------- 187 (285)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------------
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----------------
Confidence 999999976311 1123456778899999999888877775 334 359999998655421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+++.+.. ..+++|+.+.++.... ...+...+.... ....+++.+|+|+++
T Consensus 188 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dvA~~~ 261 (285)
T 2c07_A 188 --VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI----PAGRMGTPEEVANLA 261 (285)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC----TTSSCBCHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhC----CCCCCCCHHHHHHHH
Confidence 1337899999999888766432 2778888887653211 112222222211 123578999999999
Q ss_pred HHHHhcC----CCCeEEecCCC
Q 022112 210 IEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~ 227 (302)
+.++... .+..+++.++.
T Consensus 262 ~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 262 CFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp HHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHhCCCcCCCCCCEEEeCCCc
Confidence 9988652 24588888764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-18 Score=143.35 Aligned_cols=193 Identities=12% Similarity=0.036 Sum_probs=138.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 110 (271)
T 3v2g_A 31 GKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGGL 110 (271)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 357999999999999999999999999876 568999999988877654 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|++||+||...... .+....++...+++|+.++.++++++... +.++|++||....- .+
T Consensus 111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~-----------------~~ 173 (271)
T 3v2g_A 111 DILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL-----------------VP 173 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC-----------------CC
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc-----------------CC
Confidence 99999999763111 12345677889999999999999999865 45799998854321 11
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+.......+........+ ...+...+|+|++++.
T Consensus 174 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~----~~r~~~pedvA~~v~f 249 (271)
T 3v2g_A 174 WPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIA----TGSYGEPQDIAGLVAW 249 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSSHHHHHHTCT----TSSCBCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchhHHHHHhcCC----CCCCCCHHHHHHHHHH
Confidence 123478999999999987665322 6678888876543222223333322211 2346689999999999
Q ss_pred HHhcC----CCCeEEecCCC
Q 022112 212 MAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~ 227 (302)
++... .+..+++.+|.
T Consensus 250 L~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 250 LAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp HHSGGGTTCCSCEEEESTTT
T ss_pred HhCcccCCccCCEEEeCcCc
Confidence 88642 24588887763
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=145.21 Aligned_cols=197 Identities=14% Similarity=0.021 Sum_probs=141.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++..+++.. ++|
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 87 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGLD 87 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 458999999999999999999999999887 567999999888877644 799
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||... .+.......++...+++|+.++.++++++... +.++|++||...+..
T Consensus 88 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~---------------- 151 (280)
T 3tox_A 88 TAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTA---------------- 151 (280)
T ss_dssp EEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTB----------------
T ss_pred EEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcC----------------
Confidence 9999999652 11112345678899999999999999987543 336999999766521
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-----chhhHHHHhcccccccccCCcccHhh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-----PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.++.. ..++|+.+..+.... ...+...+.... ....+.+.+|
T Consensus 152 -~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~ped 226 (280)
T 3tox_A 152 -GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLH----ALKRIARPEE 226 (280)
T ss_dssp -CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTS----TTSSCBCHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccC----ccCCCcCHHH
Confidence 1123478999999999987765322 667888777653211 111222222111 1245778999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccCH
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVSH 231 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s~ 231 (302)
+|++++.++... .+.++++.+|..++.
T Consensus 227 vA~~v~~L~s~~a~~itG~~i~vdGG~~~~~ 257 (280)
T 3tox_A 227 IAEAALYLASDGASFVTGAALLADGGASVTK 257 (280)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGGCC
T ss_pred HHHHHHHHhCccccCCcCcEEEECCCccccc
Confidence 999999988753 245899999876654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-18 Score=144.23 Aligned_cols=197 Identities=14% Similarity=0.073 Sum_probs=132.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li 88 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDILV 88 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 468999999999999999999999999887 678999999988877754 899999
Q ss_pred EccccCCCCCc--chhhhhHHHHHHHhHHHHHHHHHHHHHh---------CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNV--DWCESHKVETIRTNVVGTLTLADVCRDK---------GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 68 ~~a~~~~~~~~--~~~~~~~~~~~~~n~~~~~~ll~~~~~~---------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|+|+....+.. .....++...+++|+.++.++++++... ..++|++||...+..
T Consensus 89 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~--------------- 153 (261)
T 3n74_A 89 NNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP--------------- 153 (261)
T ss_dssp ECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC---------------
T ss_pred ECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC---------------
Confidence 99997631111 1244577889999999999888877543 234899998765432
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-----hhhHHHHhcccccccccCCcccHh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-----RNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
.+....|+.+|...+.+.+.+... ..++|+.+..+..... ..+...+.. ......+.+.+
T Consensus 154 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 226 (261)
T 3n74_A 154 ---RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRD----SIPMGRLLKPD 226 (261)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------CTTSSCCCHH
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhh----cCCcCCCcCHH
Confidence 123367999999999988765432 4566666554321100 001111110 01234678999
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCCccCHH
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPGVVSHN 232 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~~~s~~ 232 (302)
|+|++++.++... .+.++++.+|..++..
T Consensus 227 dva~~~~~l~s~~~~~itG~~i~vdgG~~~~~~ 259 (261)
T 3n74_A 227 DLAEAAAFLCSPQASMITGVALDVDGGRSIGGR 259 (261)
T ss_dssp HHHHHHHHHTSGGGTTCCSCEEEESTTTTC---
T ss_pred HHHHHHHHHcCCcccCcCCcEEEecCCcccCCC
Confidence 9999999988642 3459999998776643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=148.50 Aligned_cols=201 Identities=9% Similarity=0.010 Sum_probs=143.6
Q ss_pred cccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
..++||||||+ |+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 92 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWDS 92 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46799999999 99999999999999999877 578999999988887754 7
Q ss_pred CCEEEEccccCCC-----CCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-----PNVD-WCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-----~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
+|++||+||.... +... ....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 93 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------- 161 (271)
T 3ek2_A 93 LDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAI----------- 161 (271)
T ss_dssp EEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-----------
T ss_pred CCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCC-----------
Confidence 8999999997621 0111 345677889999999999999999765 3468999987655421
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCch---hhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPR---NFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~---~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.+... ..++|+++..+...... .+...+.... ....+...
T Consensus 162 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----~~~~~~~p 230 (271)
T 3ek2_A 162 -------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNS----PLKRNVTI 230 (271)
T ss_dssp -------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHS----TTSSCCCH
T ss_pred -------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcC----CcCCCCCH
Confidence 23478999999999988765422 56777776654321111 1222222211 12446789
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCCccCHHHHH
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPGVVSHNEIL 235 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~~~s~~e~~ 235 (302)
+|+|++++.++... .+..+++.+|...++.+++
T Consensus 231 edva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~~ 267 (271)
T 3ek2_A 231 EQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGMA 267 (271)
T ss_dssp HHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC-
T ss_pred HHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhhh
Confidence 99999999988752 2458999999887776654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=147.05 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=139.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 47 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 126 (291)
T 3ijr_A 47 GKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSL 126 (291)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999876 567999999888777654 79
Q ss_pred CEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++||+||...... ......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 127 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 190 (291)
T 3ijr_A 127 NILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN---------------- 190 (291)
T ss_dssp CEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC----------------
T ss_pred CEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC----------------
Confidence 99999999752111 11245678899999999999999999764 3469999998776532
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..++|+.++.+... ........+... .....+.+.+|+|++
T Consensus 191 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~----~p~~r~~~p~dvA~~ 264 (291)
T 3ijr_A 191 --ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSN----VPMQRPGQPYELAPA 264 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTT----STTSSCBCGGGTHHH
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHcc----CCCCCCcCHHHHHHH
Confidence 12378999999999988765322 55777777654100 000111111111 123457789999999
Q ss_pred HHHHHhcC----CCCeEEecCCCcc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++.++... .+.++++.+|..+
T Consensus 265 v~~L~s~~~~~itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 265 YVYLASSDSSYVTGQMIHVNGGVIV 289 (291)
T ss_dssp HHHHHSGGGTTCCSCEEEESSSCCC
T ss_pred HHHHhCCccCCCcCCEEEECCCccc
Confidence 99988653 2458888887543
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=145.52 Aligned_cols=193 Identities=10% Similarity=0.047 Sum_probs=135.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-----CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+|||+|
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~A 85 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNA 85 (256)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 468999999999999999999999999876 357899998888777643 799999999
Q ss_pred ccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
|...... ......++...+++|+.++.++++++.. .+ .++|++||...+.+. +...
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~~~ 147 (256)
T 2d1y_A 86 AIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------------------QENA 147 (256)
T ss_dssp CCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC------------------TTBH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC------------------CCCh
Confidence 9763111 1123456788999999999999988754 23 359999997654321 2336
Q ss_pred chhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHH----h-cccc---c--ccccCCcccHhhHH
Q 022112 145 FYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKI----T-RYEK---V--VNIPNSMTILDELL 206 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~----~-~~~~---~--~~~~~~~i~v~D~a 206 (302)
.|+.+|...+.+.+.+... ..++|+.+..+ +.... . .... . ....+.+.+++|+|
T Consensus 148 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA 220 (256)
T 2d1y_A 148 AYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATE-------AVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVA 220 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------HHHHHHC--------CHHHHTTSTTSSCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCc-------hhhhccccccCCHHHHHHHHhcCCCCCCcCHHHHH
Confidence 8999999999988765422 45566655432 22111 1 1000 0 01134688999999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCccCH
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGVVSH 231 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~s~ 231 (302)
++++.++... .+..|++.++...++
T Consensus 221 ~~~~~l~s~~~~~~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 221 EAVLFLASEKASFITGAILPVDGGMTASF 249 (256)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred HHHHHHhCchhcCCCCCEEEECCCccccc
Confidence 9999988753 234899998866543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=149.19 Aligned_cols=208 Identities=11% Similarity=0.066 Sum_probs=143.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------------eecCCCChhhHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENRASLEAD 57 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~~~ 57 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 89 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSRE 89 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 458999999999999999999999998875 35789999988877
Q ss_pred Hhhc-----CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCC
Q 022112 58 IAAV-----KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGS 129 (302)
Q Consensus 58 ~~~~-----~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~ 129 (302)
+++. ++|++||+||..... ......++...+++|+.++.++++++... +.++|++||...+....
T Consensus 90 ~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~------ 162 (287)
T 3pxx_A 90 LANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAA------ 162 (287)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHH------
T ss_pred HHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccc------
Confidence 7654 899999999976321 22345678899999999999999999875 34699999987654332
Q ss_pred CCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc------------
Q 022112 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY------------ 189 (302)
Q Consensus 130 ~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~------------ 189 (302)
..+..+. .+.+....|+.+|...+.+.+.++.. ..++|+++..+.... ......+...
T Consensus 163 ~~~~~~~-~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (287)
T 3pxx_A 163 QPPGAGG-PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNS-APMYRQFRPDLEAPSRADALLA 240 (287)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSS-HHHHHHHCTTSSSCCHHHHHHH
T ss_pred ccccccc-cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccc-cchhhhhccccccchhHHHHhh
Confidence 1111222 22233367999999999987665322 667888877653311 1111111100
Q ss_pred -cccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 190 -EKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 190 -~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
.......+.+.+.+|+|++++.++... .+.++++.+|..++
T Consensus 241 ~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 241 FPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAMLK 286 (287)
T ss_dssp GGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGG
T ss_pred hhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhhhc
Confidence 001112367889999999999988642 24589999886554
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=144.01 Aligned_cols=194 Identities=13% Similarity=0.088 Sum_probs=137.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 90 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVD 90 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 468999999999999999999999999877 578999999988877654 899
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+|+... .+.......++...+++|+.++.++++++.. .+.++|++||...+...
T Consensus 91 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 154 (264)
T 3ucx_A 91 VVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRHSQ---------------- 154 (264)
T ss_dssp EEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGCCC----------------
T ss_pred EEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhccCC----------------
Confidence 9999998642 1112334567788999999999999988643 35579999997655421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh-----------cccccccccCCc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT-----------RYEKVVNIPNSM 199 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 199 (302)
+....|+.+|...+.+.+.++.. ..++|++++.+. ...+..... .........+.+
T Consensus 155 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 229 (264)
T 3ucx_A 155 --AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGT---LKSYFEHQAGKYGTSVEDIYNAAAAGSDLKRL 229 (264)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHH---HHHHHHHHHHHTTCCHHHHHHHHHTTSSSSSC
T ss_pred --CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccccc---HHHHHHhhhhhcCCCHHHHHHHHhccCCcccC
Confidence 23368999999999988765432 557777766531 111111100 000000123457
Q ss_pred ccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 200 TILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
.+.+|+|++++.++... .+.++++.+|..
T Consensus 230 ~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 262 (264)
T 3ucx_A 230 PTEDEVASAILFMASDLASGITGQALDVNCGEY 262 (264)
T ss_dssp CBHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred CCHHHHHHHHHHHcCccccCCCCCEEEECCCcc
Confidence 89999999999988642 345899988764
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=147.76 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=137.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
|++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+|||+||....
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~ 100 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSG 100 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSSEEEECSCSSHHHHHHHHHHHHTTTCCEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccceEEEeCCHHHHHHHHHHHHHHcCCCCEEEECCccCCC
Confidence 5568999999999999999999999999988 567789999988887754 68999999996521
Q ss_pred C--CcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 76 P--NVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 76 ~--~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
. .......++...+++|+.++.++++++... +.++|++||...+.+. +....|+.+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~~sK 162 (251)
T 3orf_A 101 GNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT------------------SGMIAYGATK 162 (251)
T ss_dssp BCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------------TTBHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCC------------------CCCchhHHHH
Confidence 1 123345677889999999999999999874 2369999997665421 2347899999
Q ss_pred HHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc-C----CCCe
Q 022112 151 AMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR-N----LTGI 220 (302)
Q Consensus 151 ~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~-~----~~~~ 220 (302)
...+.+++.++.. ..+|+..+..+.. ...+........ ....+++.+|+|++++.++.. . .+..
T Consensus 163 aa~~~~~~~la~e~~~~~~gi~v~~v~PG~v--~t~~~~~~~~~~----~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~ 236 (251)
T 3orf_A 163 AATHHIIKDLASENGGLPAGSTSLGILPVTL--DTPTNRKYMSDA----NFDDWTPLSEVAEKLFEWSTNSDSRPTNGSL 236 (251)
T ss_dssp HHHHHHHHHHTSTTSSSCTTCEEEEEEESCB--CCHHHHHHCTTS----CGGGSBCHHHHHHHHHHHHHCGGGCCCTTCE
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEEecCcC--cCcchhhhcccc----cccccCCHHHHHHHHHHHhcCccccCCcceE
Confidence 9999998776433 2344333322111 112333332222 234567899999999999876 2 2447
Q ss_pred EEecCCCcc
Q 022112 221 WNFTNPGVV 229 (302)
Q Consensus 221 ~~~~~~~~~ 229 (302)
+++.+++..
T Consensus 237 i~v~~g~~~ 245 (251)
T 3orf_A 237 VKFETKSKV 245 (251)
T ss_dssp EEEEEETTE
T ss_pred EEEecCCcc
Confidence 888766543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=148.41 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=138.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 41 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 120 (293)
T 3rih_A 41 ARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGAL 120 (293)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999998876 568999999888777654 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccc-cCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIF-EYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy-~~~~~~~~~~~~~~~e~ 136 (302)
|++||+||...... ......++...+++|+.++.++++++. +.+ .++|++||...+ .+
T Consensus 121 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~--------------- 185 (293)
T 3rih_A 121 DVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTG--------------- 185 (293)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBB---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCC---------------
Confidence 99999999763111 123456788899999999999999883 333 469999987542 11
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+....|+.+|...+.+.+.++.. ..++|++++++... ....+...+....+ ..-+...+|+|+
T Consensus 186 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p----~~r~~~p~dvA~ 258 (293)
T 3rih_A 186 ---YPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSIP----MGMLGSPVDIGH 258 (293)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTST----TSSCBCHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCC----CCCCCCHHHHHH
Confidence 123478999999999988765322 66788887764210 01122333322211 233567899999
Q ss_pred HHHHHHhcC----CCCeEEecCCCcc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+++.++... .+.++++.+|..+
T Consensus 259 ~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 259 LAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred HHHHHhCccccCCCCCEEEECCCccC
Confidence 999988642 3458999887654
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-18 Score=143.86 Aligned_cols=193 Identities=14% Similarity=0.068 Sum_probs=138.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCCh----hhHHHHHhhc--
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENR----ASLEADIAAV-- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~----~~~~~~~~~~-- 61 (302)
++++|||||+|+||+++++.|+++|++|++. .+|+++. +++.+++++.
T Consensus 11 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 90 (276)
T 1mxh_A 11 CPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 90 (276)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHHH
Confidence 4689999999999999999999999988763 3588888 7777776643
Q ss_pred ---CCCEEEEccccCCCCC-cchhh-----------hhHHHHHHHhHHHHHHHHHHHHHh---C-------CeEEEEcCC
Q 022112 62 ---KPTHVFNAAGVTGRPN-VDWCE-----------SHKVETIRTNVVGTLTLADVCRDK---G-------LILINYATG 116 (302)
Q Consensus 62 ---~~d~Vi~~a~~~~~~~-~~~~~-----------~~~~~~~~~n~~~~~~ll~~~~~~---~-------~~~v~~SS~ 116 (302)
++|+|||+||...... ..... .++...+++|+.++.++++++.+. + .++|++||.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS~ 170 (276)
T 1mxh_A 91 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 170 (276)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred hcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECch
Confidence 7999999999753111 11223 567789999999999999999873 2 369999997
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhc
Q 022112 117 CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITR 188 (302)
Q Consensus 117 ~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~ 188 (302)
..+... +....|+.+|...+.+.+.+.. ...++|+++..+ ......+...+..
T Consensus 171 ~~~~~~------------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~~~~~~~~~~~~ 231 (276)
T 1mxh_A 171 MTDLPL------------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PAMPQETQEEYRR 231 (276)
T ss_dssp GGGSCC------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SSSCHHHHHHHHT
T ss_pred hhcCCC------------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-ccCCHHHHHHHHh
Confidence 765421 2346899999999988766432 267899998887 2122233333332
Q ss_pred ccccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 189 YEKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 189 ~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
. ....+++.+.+|+|++++.++... .+..+++.++..
T Consensus 232 ~---~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~ 272 (276)
T 1mxh_A 232 K---VPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLI 272 (276)
T ss_dssp T---CTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred c---CCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCchh
Confidence 2 112334889999999999988652 244888888743
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=146.22 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=133.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 23 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~ 102 (277)
T 2rhc_B 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDV 102 (277)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 58999999999999999999999999876 457999999888777643 7999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------C-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------G-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|||+||...... .+....++...+++|+.++.++++++.+. + .++|++||...+.+
T Consensus 103 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~---------------- 166 (277)
T 2rhc_B 103 LVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG---------------- 166 (277)
T ss_dssp EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSC----------------
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccC----------------
Confidence 999999753111 12234567889999999999999987654 3 36999998765431
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc------cc--c-c--ccccCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR------YE--K-V--VNIPNS 198 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~------~~--~-~--~~~~~~ 198 (302)
.+....|+.+|...+.+.+.+... ..++|+++..+.. ..+...... .. . . ....+.
T Consensus 167 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 241 (277)
T 2rhc_B 167 --VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMA---ASVREHYSDIWEVSTEEAFDRITARVPIGR 241 (277)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHH---HHHHHHHHHHHTCCHHHHHHHHHHHSTTSS
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchh---hhhhhhcccccccchHHHHHHHHhcCCCCC
Confidence 123378999999999987765321 5567776655311 111100000 00 0 0 011346
Q ss_pred cccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 199 MTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.+|+|++++.++... .+.++++.++.
T Consensus 242 ~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 242 YVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 889999999999988653 23588888864
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=142.81 Aligned_cols=193 Identities=14% Similarity=0.034 Sum_probs=135.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh------cCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA------VKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~------~~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|++++.++++. .++
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~i 100 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKL 100 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999876 46789999888777753 379
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||.... +..+....++...+++|+.++.++++++. +.+ .++|++||...+...
T Consensus 101 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--------------- 165 (273)
T 1ae1_A 101 NILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL--------------- 165 (273)
T ss_dssp CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC---------------
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC---------------
Confidence 999999997531 11123455778899999999999999884 333 369999998766522
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-------chhhHHHHhcccccccccCCcccH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-------PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.++. ...++|++++++.... ...+...+.... ....+.+.
T Consensus 166 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~p 238 (273)
T 1ae1_A 166 ---PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKT----PMGRAGKP 238 (273)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHS----TTCSCBCH
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcC----CCCCCcCH
Confidence 2337899999999998766532 1678888887753211 011222222111 12347789
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+|+|++++.++... .+.++++.+|..
T Consensus 239 ~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 239 QEVSALIAFLCFPAASYITGQIIWADGGFT 268 (273)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHhCccccCcCCCEEEECCCcc
Confidence 99999999988642 245888888754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=145.41 Aligned_cols=202 Identities=10% Similarity=-0.053 Sum_probs=142.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++..+++.. ++|++|
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv 87 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLH 87 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 468999999999999999999999999877 678999999888776643 799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
|+||...... .+....++...+++|+.++.++++++... +.++|++||...+.+. +..
T Consensus 88 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~ 149 (255)
T 4eso_A 88 INAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------------PGM 149 (255)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------------TTB
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------------CCc
Confidence 9999763111 11245677889999999999999999764 3369999997765422 234
Q ss_pred CchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
..|+.+|...+.+.+.++.. ..++|+++..+.... ..................+.+.+.+|+|++++.+
T Consensus 150 ~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L 229 (255)
T 4eso_A 150 SVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRNGTADEVARAVLFL 229 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCCcCHHHHHHHHHHH
Confidence 78999999999987665322 667888877653211 1111111111000011134467899999999988
Q ss_pred HhcC---CCCeEEecCCCccCHHH
Q 022112 213 AKRN---LTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 213 ~~~~---~~~~~~~~~~~~~s~~e 233 (302)
+... .+..+++.+|...++.+
T Consensus 230 ~s~~~~itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 230 AFEATFTTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp HHTCTTCCSCEEEESTTTTTTBCC
T ss_pred cCcCcCccCCEEEECCCccccCcC
Confidence 7642 24589999987766543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-18 Score=143.22 Aligned_cols=192 Identities=16% Similarity=0.059 Sum_probs=138.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 28 ~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i 107 (269)
T 4dmm_A 28 DRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRL 107 (269)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 357999999999999999999999999876 568999999988877754 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||...... ......++...+++|+.++.++++++.. . ..++|++||...+.+.
T Consensus 108 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 172 (269)
T 4dmm_A 108 DVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN--------------- 172 (269)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC---------------
Confidence 99999999763111 1224567788999999999999988743 2 3469999997654421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhH-HHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFI-TKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. .... ..+.... ....+.+.+|+|++
T Consensus 173 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~---~~~~~~~~~~~~----p~~r~~~~~dvA~~ 242 (269)
T 4dmm_A 173 ---PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMT---SELAAEKLLEVI----PLGRYGEAAEVAGV 242 (269)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCS---CHHHHHHHGGGC----TTSSCBCHHHHHHH
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccc---ccccHHHHHhcC----CCCCCCCHHHHHHH
Confidence 23378999999888887664321 6677887766422 1121 2221111 13456789999999
Q ss_pred HHHHHhcC-----CCCeEEecCCCccC
Q 022112 209 SIEMAKRN-----LTGIWNFTNPGVVS 230 (302)
Q Consensus 209 ~~~~~~~~-----~~~~~~~~~~~~~s 230 (302)
++.++..+ .+.++++.+|..++
T Consensus 243 v~~l~s~~~~~~itG~~i~vdGG~~~s 269 (269)
T 4dmm_A 243 VRFLAADPAAAYITGQVINIDGGLVMA 269 (269)
T ss_dssp HHHHHHCGGGGGCCSCEEEESTTSCCC
T ss_pred HHHHhCCcccCCCcCCEEEECCCeecC
Confidence 99988752 24589998876543
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=144.45 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=136.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 27 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 106 (277)
T 4dqx_A 27 QRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLV 106 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999999877 578999999988877754 899999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||..... .......++...+++|+.++.++++++.. .+ .++|++||...+.+. +
T Consensus 107 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~ 168 (277)
T 4dqx_A 107 NNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI------------------A 168 (277)
T ss_dssp ECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC------------------T
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC------------------C
Confidence 999976311 11234457788899999999998888854 23 369999997765421 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc-ccc---------cccccCCcccHh
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR-YEK---------VVNIPNSMTILD 203 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~-~~~---------~~~~~~~~i~v~ 203 (302)
....|+.+|...+.+.+.++.. ..++|+++..+ +...... ... .......+.+.+
T Consensus 169 ~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~-------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pe 241 (277)
T 4dqx_A 169 DRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSP-------YFTKIFAEAKDPAKLRSDFNARAVMDRMGTAE 241 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------HHHHHHHTCSCHHHHHHHHHTTSTTCSCBCHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCc-------hhhhhcccccchhHHHHHHHhcCcccCCcCHH
Confidence 3478999999999988765432 44555555432 1111111 000 001134567899
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|+|++++.++... .+.++++.+|..++
T Consensus 242 dvA~~v~~L~s~~~~~itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 242 EIAEAMLFLASDRSRFATGSILTVDGGSSIG 272 (277)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESSSSSSC
T ss_pred HHHHHHHHHhCCccCCCcCCEEEECCchhhh
Confidence 9999999988653 34589998886654
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-18 Score=144.41 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=134.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 104 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGG 104 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTSS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCCC
Confidence 458999999999999999999999999876 457999999988877654 8
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||....... +....++...+++|+.++.++++++. +.+ .++|++||...+.+.
T Consensus 105 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 170 (281)
T 3v2h_A 105 ADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS-------------- 170 (281)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC--------------
Confidence 9999999997632111 12445778899999999999999873 333 359999997654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCch-hhH--HHHhcccc----c--ccccCCc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPR-NFI--TKITRYEK----V--VNIPNSM 199 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~-~~~--~~~~~~~~----~--~~~~~~~ 199 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+...... ... ..+..... . ....+.+
T Consensus 171 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 246 (281)
T 3v2h_A 171 ----PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVMLKGQPTKKF 246 (281)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------CCTTCSC
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHHHhcCCCCCc
Confidence 23478999999999988765322 56777777765321100 000 00000000 0 0123568
Q ss_pred ccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 200 TILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.+++|+|++++.++... .+.++++.+|.
T Consensus 247 ~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 247 ITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278 (281)
T ss_dssp BCHHHHHHHHHHHHSSGGGGCCSCEEEESTTG
T ss_pred cCHHHHHHHHHHHcCCCcCCCCCcEEEECCCc
Confidence 89999999999988653 34589998874
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=144.24 Aligned_cols=193 Identities=12% Similarity=-0.002 Sum_probs=134.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+|||+||....
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~ 87 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESY 87 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 468999999999999999999999999876 568999999888777643 79999999997631
Q ss_pred CC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 76 PN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 76 ~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
.. ......++...+++|+.++.++++++... + .++|++||...+... +....|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~~s 149 (264)
T 2dtx_A 88 GKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------------------KNASAYVTS 149 (264)
T ss_dssp BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------------------TTBHHHHHH
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------------------CCchhHHHH
Confidence 11 11245578889999999999998888653 2 469999997765421 233789999
Q ss_pred HHHHHHHHHhhcCc-------eEEeeecccCCCCCCchhhHH-----------HHhcccccccccCCcccHhhHHHHHHH
Q 022112 150 KAMVEELLKNFENV-------CTLRVRMPISSDLSNPRNFIT-----------KITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 150 K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
|...+.+.+.+... ..++|+++..+.. ..+.. ..............+.+.+|+|++++.
T Consensus 150 K~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~ 226 (264)
T 2dtx_A 150 KHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLV---RKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAF 226 (264)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHH---HHHHHHHHCSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcch---hhhhhcccccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 99999987665321 4566666644210 01100 000000000113458899999999999
Q ss_pred HHhcC----CCCeEEecCCC
Q 022112 212 MAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~ 227 (302)
++... .+..+++.++.
T Consensus 227 l~s~~~~~~tG~~i~vdGG~ 246 (264)
T 2dtx_A 227 LASREASFITGTCLYVDGGL 246 (264)
T ss_dssp HHSGGGTTCCSCEEEESTTG
T ss_pred HhCchhcCCCCcEEEECCCc
Confidence 88753 24488888864
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=143.81 Aligned_cols=193 Identities=11% Similarity=0.027 Sum_probs=132.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+|||+||....
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~ 94 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSAD 94 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC-
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 468999999999999999999999999987 467999999888777643 78999999997621
Q ss_pred C-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 76 P-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 76 ~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
. .......++...+++|+.++.++++++.+ .+ .++|++||...+.+. +....|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~~s 156 (247)
T 1uzm_A 95 AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------------------GNQANYAAS 156 (247)
T ss_dssp ----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------------CCHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC------------------CCChhHHHH
Confidence 0 11234567788999999999999988754 33 369999987543311 233689999
Q ss_pred HHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----
Q 022112 150 KAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---- 216 (302)
Q Consensus 150 K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---- 216 (302)
|...+.+.+.+... ..++|+++..+... ....+...+... .....+.+.+|+|++++.++...
T Consensus 157 K~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~----~p~~~~~~~~dvA~~~~~l~s~~~~~~ 232 (247)
T 1uzm_A 157 KAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQF----IPAKRVGTPAEVAGVVSFLASEDASYI 232 (247)
T ss_dssp HHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGG----CTTCSCBCHHHHHHHHHHHHSGGGTTC
T ss_pred HHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhc----CCCCCCcCHHHHHHHHHHHcCccccCC
Confidence 99998887665321 55677766442100 000111111111 01235789999999999988652
Q ss_pred CCCeEEecCCCc
Q 022112 217 LTGIWNFTNPGV 228 (302)
Q Consensus 217 ~~~~~~~~~~~~ 228 (302)
.+..+++.++..
T Consensus 233 ~G~~i~vdgG~~ 244 (247)
T 1uzm_A 233 SGAVIPVDGGMG 244 (247)
T ss_dssp CSCEEEESTTTT
T ss_pred cCCEEEECCCcc
Confidence 345888888754
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=146.70 Aligned_cols=194 Identities=14% Similarity=0.064 Sum_probs=127.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 30 k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 109 (280)
T 4da9_A 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFGRID 109 (280)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHSCCC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 57999999999999999999999999876 567999999888877654 899
Q ss_pred EEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 65 ~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++||+||... .+..+....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 110 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~----------- 178 (280)
T 4da9_A 110 CLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS----------- 178 (280)
T ss_dssp EEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------------
T ss_pred EEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC-----------
Confidence 9999999731 11112245677889999999999988887553 2369999997654321
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+..... ..+...+..+ ......+...+|
T Consensus 179 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---~~p~~r~~~ped 248 (280)
T 4da9_A 179 -------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESG---LVPMRRWGEPED 248 (280)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------CCBCHHH
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHHHHHhhc---CCCcCCcCCHHH
Confidence 23368999999999987665322 5567777665422110 0111111110 011245678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+|++++.++... .+.++++.+|..+
T Consensus 249 vA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (280)
T 4da9_A 249 IGNIVAGLAGGQFGFATGSVIQADGGLSI 277 (280)
T ss_dssp HHHHHHHHHTSTTGGGTTCEEEESTTCC-
T ss_pred HHHHHHHHhCccccCCCCCEEEECCCccc
Confidence 999999988753 2458999887543
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=144.89 Aligned_cols=196 Identities=12% Similarity=0.057 Sum_probs=136.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 104 (269)
T 3gk3_A 25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFGKV 104 (269)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357999999999999999999999999877 568999999988877654 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 105 d~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 169 (269)
T 3gk3_A 105 DVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA--------------- 169 (269)
T ss_dssp SEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---------------
T ss_pred CEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC---------------
Confidence 99999999763111 1224567788999999999999988754 33 469999997655421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc-cccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK-VVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+++.+... ..++|+++..+... .+......... .......+...+|+|++
T Consensus 170 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~~~p~dvA~~ 243 (269)
T 3gk3_A 170 ---FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVE---AVPQDVLEAKILPQIPVGRLGRPDEVAAL 243 (269)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTT---C-------CCSGGGCTTSSCBCHHHHHHH
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhh---hhchhHHHHHhhhcCCcCCccCHHHHHHH
Confidence 23378999999988887664322 55667766554221 11111111010 01123456789999999
Q ss_pred HHHHHhcC----CCCeEEecCCCccC
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
++.++... .+..+++.+|..+|
T Consensus 244 v~~L~s~~~~~itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 244 IAFLCSDDAGFVTGADLAINGGMHMS 269 (269)
T ss_dssp HHHHTSTTCTTCCSCEEEESTTSCCC
T ss_pred HHHHhCCCcCCeeCcEEEECCCEeCc
Confidence 99988753 24589999886653
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=145.93 Aligned_cols=194 Identities=11% Similarity=0.052 Sum_probs=139.1
Q ss_pred cEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+ |+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 10 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD 89 (265)
T 1qsg_A 10 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFD 89 (265)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSSEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 579999999 99999999999999999876 346889998888777654 789
Q ss_pred EEEEccccCCC-----CCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-----PNVD-WCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 65 ~Vi~~a~~~~~-----~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|||+||.... +..+ ....++...+++|+.++.++++++.+. +.++|++||...+...
T Consensus 90 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------- 156 (265)
T 1qsg_A 90 GFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------------- 156 (265)
T ss_dssp EEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------------
T ss_pred EEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC-------------
Confidence 99999997520 0011 234577889999999999999999875 3369999997654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.+.. ...++|++++.+..... ..+...+....+ ...+.+.+|
T Consensus 157 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~d 227 (265)
T 1qsg_A 157 -----PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP----IRRTVTIED 227 (265)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST----TSSCCCHHH
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCC----CCCCCCHHH
Confidence 2336899999999998866432 16788888877532111 112222222111 234678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|++++.++... .+..|++.++...+
T Consensus 228 va~~v~~l~s~~~~~~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 228 VGNSAAFLCSDLSAGISGEVVHVDGGFSIA 257 (265)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTTGGGB
T ss_pred HHHHHHHHhCchhcCccCCEEEECCCcCCC
Confidence 999999988652 24589999886544
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=145.92 Aligned_cols=181 Identities=14% Similarity=0.145 Sum_probs=130.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc-EEE------------------------eecCCCCh-hhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID-FTY------------------------GSGRLENR-ASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~-V~~------------------------~~~dl~~~-~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||++++++|+++|++ |++ +.+|++|. +++.+++++. +
T Consensus 5 ~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~ 84 (254)
T 1sby_A 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKT 84 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999997 655 34688887 7777666543 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|+|||+||.. ...++...+++|+.++.++++++... +.++|++||...+...
T Consensus 85 id~lv~~Ag~~-------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 145 (254)
T 1sby_A 85 VDILINGAGIL-------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI------------ 145 (254)
T ss_dssp CCEEEECCCCC-------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------
T ss_pred CCEEEECCccC-------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC------------
Confidence 99999999965 24567889999999999999988642 2359999998766421
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc------hhhHHHHhcccccccccCCcc
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP------RNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~i 200 (302)
+....|+.+|...+.+++.+... ..++|+++..+..... ......+. ....+.
T Consensus 146 ------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 212 (254)
T 1sby_A 146 ------HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL-------LSHPTQ 212 (254)
T ss_dssp ------TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH-------TTSCCE
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHH-------hcCCCC
Confidence 23368999999999988765322 5677777765311000 00111111 112345
Q ss_pred cHhhHHHHHHHHHhcCCC-CeEEecCC
Q 022112 201 ILDELLPISIEMAKRNLT-GIWNFTNP 226 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~~~-~~~~~~~~ 226 (302)
+++|+|++++.+++.... ..|++.++
T Consensus 213 ~~~dvA~~i~~~~~~~~~G~~~~v~gG 239 (254)
T 1sby_A 213 TSEQCGQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp EHHHHHHHHHHHHHHCCTTCEEEEETT
T ss_pred CHHHHHHHHHHHHHcCCCCCEEEEeCC
Confidence 899999999998876544 48888887
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=144.13 Aligned_cols=194 Identities=14% Similarity=0.082 Sum_probs=133.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+|
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 83 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDIL 83 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999999999999998876 357899999888877643 79999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+||...... ......++...+++|+.++.++.+++ ++.+. ++|++||...+...
T Consensus 84 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 145 (255)
T 2q2v_A 84 VNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS------------------ 145 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC------------------
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC------------------
Confidence 99999753111 11234577889999999777666655 45543 59999997765421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhH---HHHh--cc---ccc-c--cccCCccc
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFI---TKIT--RY---EKV-V--NIPNSMTI 201 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~---~~~~--~~---~~~-~--~~~~~~i~ 201 (302)
+....|+.+|...+.+.+.+... ..++|++++++.. ..+. .... .. ... . .....+++
T Consensus 146 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 222 (255)
T 2q2v_A 146 TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLV---QKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVT 222 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHH---HHHHHHHHHHTCCHHHHHHHHHTTTCTTCCCBC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcch---hhhcccccccccchHHHHHHHHhccCCCCCCcC
Confidence 23368999999999987664321 6677877766421 1111 0000 00 000 0 11346889
Q ss_pred HhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 202 LDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 202 v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++|+|++++.++... .+..|++.++..
T Consensus 223 ~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 223 PEHLGELVLFLCSEAGSQVRGAAWNVDGGWL 253 (255)
T ss_dssp HHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHhCCccCCCCCCEEEECCCcc
Confidence 999999999988652 245899988754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=144.59 Aligned_cols=194 Identities=12% Similarity=0.011 Sum_probs=133.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999876 467999999888777643 799
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+||..... .......++...+++|+.++.++++++.+ .+ .++|++||...+.+.
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 146 (256)
T 1geg_A 82 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN--------------- 146 (256)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC---------------
Confidence 999999965211 11123456778999999999888877754 23 469999987644311
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc-----ccc----cc--cccCC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR-----YEK----VV--NIPNS 198 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~-----~~~----~~--~~~~~ 198 (302)
+....|+.+|...+.+.+.+... ..++|+++..+.. ..+...+.. ... .. .....
T Consensus 147 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 220 (256)
T 1geg_A 147 ---PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMW---AEIDRQVSEAAGKPLGYGTAEFAKRITLGR 220 (256)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHH---HHHHHHHHHHHTCCTTHHHHHHHTTCTTCS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchh---hhhhhhccccccCChHHHHHHHHhcCCCCC
Confidence 22368999999999887665321 5677777765310 111100000 000 00 01234
Q ss_pred cccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 199 MTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+.+.+|+|++++.++... .+..+++.+|..
T Consensus 221 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 254 (256)
T 1geg_A 221 LSEPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 254 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred CcCHHHHHHHHHHHhCccccCCCCCEEEeCCCcc
Confidence 789999999999988653 234888887643
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-18 Score=142.46 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=129.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-------cEEE------------------------eecCCCChhhHHHHHhhc-
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTY------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
++++|||||+|+||++++++|+++|+ +|++ +.+|++|.+++.++++..
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999998 7765 567999999888777643
Q ss_pred ----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
++|+|||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 152 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF--------- 152 (244)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------
T ss_pred HhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC---------
Confidence 7999999999763111 1124457788999999999999998743 33 369999998766521
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhc----C----ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHh
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFE----N----VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~----~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
++...|+.+|...+.+++.+. . ..++||++++++....... .. ...+++.+
T Consensus 153 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--------~~----~~~~~~~~ 211 (244)
T 2bd0_A 153 ---------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDD--------EM----QALMMMPE 211 (244)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCS--------TT----GGGSBCHH
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccc--------cc----cccCCCHH
Confidence 233789999999998875542 2 2778999998864321110 00 12578999
Q ss_pred hHHHHHHHHHhcC
Q 022112 204 ELLPISIEMAKRN 216 (302)
Q Consensus 204 D~a~~~~~~~~~~ 216 (302)
|+|++++.++..+
T Consensus 212 dva~~~~~l~~~~ 224 (244)
T 2bd0_A 212 DIAAPVVQAYLQP 224 (244)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999864
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=144.88 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=137.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEE--------------eecCCCChhhHHHHHhhc---CCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY--------------GSGRLENRASLEADIAAV---KPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~--------------~~~dl~~~~~~~~~~~~~---~~d~Vi~~a~~~~ 74 (302)
+++++|||||+|+||+++++.|++ .|+.|++ +.+|++|.+++.++++.. ++|++||+||...
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nAg~~~ 82 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLNAGILI 82 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEECCCCCC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccccceEEecCcCCHHHHHHHHHHHHhCCCCEEEECCccCC
Confidence 356899999999999999999999 7887766 678999999988887543 7899999999753
Q ss_pred C-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 75 R-PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 75 ~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
. +..+....++...+++|+.++.++++++... +.++|++||...+... +....|+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------------~~~~~Y~asK 144 (244)
T 4e4y_A 83 KGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK------------------PNSFAYTLSK 144 (244)
T ss_dssp CBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC------------------TTBHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC------------------CCCchhHHHH
Confidence 1 1122345677889999999999999998765 2358999987665421 2336899999
Q ss_pred HHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh-----------cccccccccCCcccHhhHHHHHHH
Q 022112 151 AMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT-----------RYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 151 ~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
...+.+.+.++.. ..++|+++..+. ...+..... ...........+.+.+|+|++++.
T Consensus 145 aa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~ 221 (244)
T 4e4y_A 145 GAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDL---YRNLIQKYANNVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIF 221 (244)
T ss_dssp HHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHH---HHHHHHHHHHHHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCeEEEEEecCccCchh---hHHHHHhhhhhcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHH
Confidence 9999998765431 566777665431 111111100 000000113457889999999999
Q ss_pred HHhcC----CCCeEEecCCCc
Q 022112 212 MAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~~ 228 (302)
++... .+..+++.+|..
T Consensus 222 l~s~~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 222 LLSDKSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp HHSGGGTTCCSCEEEESTTGG
T ss_pred HhcCccccccCCeEeECCCcc
Confidence 98653 245888888754
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-19 Score=150.88 Aligned_cols=207 Identities=10% Similarity=-0.041 Sum_probs=131.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------ecCCCChhhHHHHHhhc--CCCEEEEccccCCCCCcch
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------SGRLENRASLEADIAAV--KPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------~~dl~~~~~~~~~~~~~--~~d~Vi~~a~~~~~~~~~~ 80 (302)
|+++|||||+|+||+++++.|+++|++|++. .+|+++.+++.+++++. ++|+|||+||...
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~------ 74 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP------ 74 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC------
Confidence 4589999999999999999999999999884 35777788888888754 6799999999762
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC-----------CCCCCCC
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED-----------TPNFVGS 144 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~-----------~~~~~~~ 144 (302)
....+...+++|+.++.++++++.+ .+ .++|++||...+......+.. ...+.+.+ .+.++..
T Consensus 75 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (257)
T 1fjh_A 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPL-ALALEAGEEAKARAIVEHAGEQGGNL 153 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTT-HHHHHHTCHHHHHHHHHTCCTTHHHH
T ss_pred CcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchh-hhhhcccchhhhhhhhhcccCCCCcc
Confidence 1234788999999999999998864 23 469999998877321100000 00000000 1222346
Q ss_pred chhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc--hhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 145 FYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
.|+.+|...+.+++.+... ..++|+.+..+..... ..+...+.... ......+.+.+|+|++++.++.
T Consensus 154 ~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dvA~~~~~l~~ 231 (257)
T 1fjh_A 154 AYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKF--VPPMGRRAEPSEMASVIAFLMS 231 (257)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------C--CCSTTSCCCTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhc--ccccCCCCCHHHHHHHHHHHhC
Confidence 8999999999988765322 6788888766532110 01111111100 0112347899999999999887
Q ss_pred cC---C-CCeEEecCCCcc
Q 022112 215 RN---L-TGIWNFTNPGVV 229 (302)
Q Consensus 215 ~~---~-~~~~~~~~~~~~ 229 (302)
.+ . +..+++.++...
T Consensus 232 ~~~~~~tG~~~~vdgG~~~ 250 (257)
T 1fjh_A 232 PAASYVHGAQIVIDGGIDA 250 (257)
T ss_dssp GGGTTCCSCEEEESTTHHH
T ss_pred chhcCCcCCEEEECCCccc
Confidence 53 2 347888877543
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=145.30 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=137.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhh----cCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAA----VKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~----~~~d~V 66 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++.+. .++|+|
T Consensus 31 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD~l 110 (273)
T 3uf0_A 31 GRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVDVL 110 (273)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCcEE
Confidence 468999999999999999999999999876 56899999888776442 289999
Q ss_pred EEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+||....... .....++...+++|+.++.++++++. +.+ .++|++||...+.+.
T Consensus 111 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~------------------ 172 (273)
T 3uf0_A 111 VNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG------------------ 172 (273)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------
T ss_pred EECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC------------------
Confidence 999997631111 22455778899999999999999874 333 359999997765421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ...+...+.... ..+.+...+|+|+++
T Consensus 173 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~pedva~~v 248 (273)
T 3uf0_A 173 RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARI----PAGRWATPEDMVGPA 248 (273)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHS----TTSSCBCGGGGHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcC----CCCCCCCHHHHHHHH
Confidence 23478999999999988765432 556777766532100 011122222111 134577899999999
Q ss_pred HHHHhcC----CCCeEEecCCCccC
Q 022112 210 IEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+.++... .+.++++.+|..+|
T Consensus 249 ~~L~s~~a~~itG~~i~vdGG~~~s 273 (273)
T 3uf0_A 249 VFLASDAASYVHGQVLAVDGGWLAS 273 (273)
T ss_dssp HHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHhCchhcCCcCCEEEECcCccCC
Confidence 9988752 34589998876543
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-18 Score=145.88 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=137.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhc---
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++..
T Consensus 18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 97 (303)
T 1yxm_A 18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDT 97 (303)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999876 237899999888877643
Q ss_pred --CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 --KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 --~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|+|||+||...... ......++...+++|+.++.++++++... +.++|++||...++
T Consensus 98 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~------------- 164 (303)
T 1yxm_A 98 FGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG------------- 164 (303)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC-------------
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecccC-------------
Confidence 6999999999652111 12234567788999999999999997652 44699999876222
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCC--CCc---hhhHHHHhcccccccccCCcc
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDL--SNP---RNFITKITRYEKVVNIPNSMT 200 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~--~~~---~~~~~~~~~~~~~~~~~~~~i 200 (302)
.+....|+.+|...+.+.+.+.. ..++||++++++.. ... ..+...+.... ....+.
T Consensus 165 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----p~~~~~ 234 (303)
T 1yxm_A 165 ------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI----PAKRIG 234 (303)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS----TTSSCB
T ss_pred ------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC----cccCCC
Confidence 12336899999999888765422 27799999988621 111 11111111110 123478
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+.+|+|++++.++... .+..+++.++...+
T Consensus 235 ~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 235 VPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLY 268 (303)
T ss_dssp CTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred CHHHHHHHHHHHhCcccccCCCcEEEECCCeecc
Confidence 9999999999988652 23589999886543
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-18 Score=142.83 Aligned_cols=192 Identities=16% Similarity=0.046 Sum_probs=137.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 88 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILV 88 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999999887 568999999988877754 899999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||...... .+....++...+++|+.++.++++++.. .+ .++|++||...+.+. +
T Consensus 89 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~ 150 (248)
T 3op4_A 89 NNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN------------------A 150 (248)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------------------T
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC------------------C
Confidence 9999763111 1224567788999999999999998754 33 369999987654321 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
....|+.+|...+.+.+.++.. ..++|+.+..+.... ............ ..+.+.+.+|+|++++.+
T Consensus 151 ~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~----p~~r~~~p~dva~~v~~L 226 (248)
T 3op4_A 151 GQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQV----PAGRLGDPREIASAVAFL 226 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTC----TTCSCBCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcC----CCCCCcCHHHHHHHHHHH
Confidence 3478999999988887665332 556777665542211 111222222111 234577899999999998
Q ss_pred HhcC----CCCeEEecCCC
Q 022112 213 AKRN----LTGIWNFTNPG 227 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~~ 227 (302)
+... .+.++++.+|.
T Consensus 227 ~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 227 ASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp HSGGGTTCCSCEEEESTTS
T ss_pred cCCccCCccCcEEEECCCe
Confidence 8643 24588888864
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-18 Score=142.14 Aligned_cols=194 Identities=14% Similarity=0.064 Sum_probs=134.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVST 85 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 468999999999999999999999999876 457899998888777643 6999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC--eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL--ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+|+...... ......++...+++|+.++.++.+.+ ++.+. ++|++||...+.+.
T Consensus 86 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 149 (251)
T 1zk4_A 86 LVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------------- 149 (251)
T ss_dssp EEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------------
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC----------------
Confidence 999999753111 12344567889999999877666554 44453 59999998765422
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc------C----ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE------N----VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~------~----~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+. . ..++||++++++.... +.......... ......+++.+|+|+
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dva~ 224 (251)
T 1zk4_A 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRT---KTPMGHIGEPNDIAY 224 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTT---TCTTSSCBCHHHHHH
T ss_pred --CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCchhhhHHHhh---cCCCCCCcCHHHHHH
Confidence 234789999999998876542 2 2678888877642111 00111110000 011245789999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+++.++... .+..+++.++..
T Consensus 225 ~~~~l~~~~~~~~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 225 ICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHcCcccccccCcEEEECCCcc
Confidence 999988652 245899988754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-18 Score=143.77 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=140.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------------eecCCCChhhHHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENRASLEA 56 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~~ 56 (302)
.++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 91 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA 91 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 3568999999999999999999999998875 3579999999888
Q ss_pred HHhhc-----CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCC
Q 022112 57 DIAAV-----KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGH 125 (302)
Q Consensus 57 ~~~~~-----~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~ 125 (302)
++++. ++|++||+||... ......++...+++|+.++.++++++... +.++|++||...+.+..
T Consensus 92 ~~~~~~~~~g~id~lv~nAg~~~---~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 166 (278)
T 3sx2_A 92 ALQAGLDELGRLDIVVANAGIAP---MSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVG-- 166 (278)
T ss_dssp HHHHHHHHHCCCCEEEECCCCCC---CSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCC--
T ss_pred HHHHHHHHcCCCCEEEECCCCCC---CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCc--
Confidence 77654 8999999999773 33346788899999999999999987542 34699999976544221
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc--hhhHHHHhcccc----
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP--RNFITKITRYEK---- 191 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~--~~~~~~~~~~~~---- 191 (302)
.+.+....|+.+|...+.+.+.++.. ..++|+++..+..... ..++........
T Consensus 167 ------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 234 (278)
T 3sx2_A 167 ------------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGA 234 (278)
T ss_dssp ------------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CT
T ss_pred ------------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhh
Confidence 11123367999999999988765322 6678888776533211 112211111111
Q ss_pred -cccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 192 -VVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 192 -~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
....+..+.+.+|+|++++.++... .+.++++.+|..
T Consensus 235 ~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 235 MGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGFL 276 (278)
T ss_dssp TSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred hhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECCCcc
Confidence 0112357889999999999988653 245889888743
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-18 Score=143.73 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=132.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|+||
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv 84 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLV 84 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 468999999999999999999999999876 457999999888777643 799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHH----HHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLA----DVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll----~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||...... ......++...+++|+.++..+. ..+++.+ .++|++||...+.+. +
T Consensus 85 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~ 146 (254)
T 1hdc_A 85 NNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------------------A 146 (254)
T ss_dssp ECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------T
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC------------------C
Confidence 9999763111 12244577889999999997544 4455554 369999997665421 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhccc--ccc-c-ccCCcc-cHhhHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYE--KVV-N-IPNSMT-ILDELLPI 208 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~--~~~-~-~~~~~i-~v~D~a~~ 208 (302)
....|+.+|...+.+.+.+... ..++|++++++ +...+.... ... . ....+. +.+|+|++
T Consensus 147 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~dvA~~ 219 (254)
T 1hdc_A 147 LTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP-------MTAETGIRQGEGNYPNTPMGRVGNEPGEIAGA 219 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------HHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCc-------cccccchhHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 3478999999999987665322 66788777653 111111100 000 0 112367 89999999
Q ss_pred HHHHHhcC----CCCeEEecCCCc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++.++... .+..+++.++..
T Consensus 220 v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 220 VVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHhCchhcCCCCCEEEECCCcc
Confidence 99988653 245888888743
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-18 Score=144.96 Aligned_cols=194 Identities=13% Similarity=0.062 Sum_probs=138.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++++++++. +
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 128 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALGG 128 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 458999999999999999999999999876 467899998887777643 8
Q ss_pred CCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 63 ~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|++||+||.... +..+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 129 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~--------------- 193 (294)
T 3r3s_A 129 LDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS--------------- 193 (294)
T ss_dssp CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC---------------
T ss_pred CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC---------------
Confidence 9999999997521 1112245677899999999999999999765 3479999998776522
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCC---CCchhhHHHHhcccccccccCCcccHhhHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDL---SNPRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. .....+...+... .....+...+|+|
T Consensus 194 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~p~~r~~~p~dvA 266 (294)
T 3r3s_A 194 ---PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQ----TPMKRAGQPAELA 266 (294)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTT----STTSSCBCGGGGH
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHHhc----CCCCCCcCHHHHH
Confidence 23478999999999987665322 5677777765310 0001111111000 1123467899999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCcc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++++.++... .+.++++.+|..+
T Consensus 267 ~~v~~L~s~~~~~itG~~i~vdGG~~l 293 (294)
T 3r3s_A 267 PVYVYLASQESSYVTAEVHGVCGGEHL 293 (294)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred HHHHHHhCccccCCCCCEEEECCCccC
Confidence 9999988643 3458999988654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=146.51 Aligned_cols=192 Identities=12% Similarity=0.028 Sum_probs=137.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 108 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLV 108 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 357999999999999999999999999887 567999999988877654 899999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||..... ..+....++...+++|+.++.++++++.. .+ .++|++||...+.+ .+
T Consensus 109 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------------~~ 170 (277)
T 3gvc_A 109 ANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVA------------------VG 170 (277)
T ss_dssp ECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSC------------------CT
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccC------------------CC
Confidence 999976311 11234567888999999999999988754 22 35999998765432 12
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc---c-----cc---ccccCCcccH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY---E-----KV---VNIPNSMTIL 202 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~---~-----~~---~~~~~~~i~v 202 (302)
....|+.+|...+.+.+.++.. ..++|+++..+ +....... . .. ......+.+.
T Consensus 171 ~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p 243 (277)
T 3gvc_A 171 GTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTP-------MQQTAMAMFDGALGAGGARSMIARLQGRMAAP 243 (277)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH-------HHHHHHTCC------CCHHHHHHHHHSSCBCH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCc-------hHHHhhhcchhhHHHHhhhhhhhccccCCCCH
Confidence 3478999999999988765322 55677776553 11111110 0 00 0112457789
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|+|++++.++... .+.++++.+|...+
T Consensus 244 edvA~~v~~L~s~~a~~itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 244 EEMAGIVVFLLSDDASMITGTTQIADGGTIAA 275 (277)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGGGS
T ss_pred HHHHHHHHHHcCCccCCccCcEEEECCcchhc
Confidence 99999999988653 24589998886554
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=145.40 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=136.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
..++||||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 91 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVGE 91 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999999876 468999999888877754 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+|||+||...... ......++...+++|+.++.++++++. +.+ .++|++||...+.+.
T Consensus 92 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 157 (256)
T 3ezl_A 92 IDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ-------------- 157 (256)
T ss_dssp EEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSC--------------
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCC--------------
Confidence 899999999763111 123456778899999999888877763 344 369999997655421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.+... ..++|+++..+... ....+...+.... ....+.+.+|+|+
T Consensus 158 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~----~~~~~~~~~dva~ 229 (256)
T 3ezl_A 158 ----FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATI----PVRRLGSPDEIGS 229 (256)
T ss_dssp ----SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHS----TTSSCBCHHHHHH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 23478999999998887665332 45566665442110 1122333332221 1345678999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCcc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+++.++... .+..+++.+|..+
T Consensus 230 ~~~~l~s~~~~~~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 230 IVAWLASEESGFSTGADFSLNGGLHM 255 (256)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTSCC
T ss_pred HHHHHhCCcccCCcCcEEEECCCEeC
Confidence 999988642 2458999887543
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-18 Score=143.67 Aligned_cols=185 Identities=12% Similarity=0.062 Sum_probs=131.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|++||+
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnn 94 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNN 94 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEEC
Confidence 4568999999999999999999999999887 578999999988877654 79999999
Q ss_pred cccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
||...... ......++...+++|+.++.++++++. +.+ .++|++||...+... +..
T Consensus 95 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------------------~~~ 156 (266)
T 3p19_A 95 AGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF------------------PDH 156 (266)
T ss_dssp CCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------------TTC
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC------------------CCC
Confidence 99763111 122445777899999999999777664 333 469999997765421 233
Q ss_pred CchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
..|+.+|...+.+.+.++.. ..++|+++..+.... ........... ......+.+.+|+|++++.++
T Consensus 157 ~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---~~~~~r~~~pedvA~av~~l~ 233 (266)
T 3p19_A 157 AAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAW---RVDMGGVLAADDVARAVLFAY 233 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHH---HHHTTCCBCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHhh---cccccCCCCHHHHHHHHHHHH
Confidence 78999999999887665322 567777776642211 01111111100 001345788999999999999
Q ss_pred hcCCC
Q 022112 214 KRNLT 218 (302)
Q Consensus 214 ~~~~~ 218 (302)
+.+..
T Consensus 234 ~~~~~ 238 (266)
T 3p19_A 234 QQPQN 238 (266)
T ss_dssp HSCTT
T ss_pred cCCCC
Confidence 87543
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=145.47 Aligned_cols=192 Identities=17% Similarity=0.066 Sum_probs=130.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 27 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 106 (266)
T 3grp_A 27 GRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILV 106 (266)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 358999999999999999999999998876 678999999988877643 799999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||..... .......++...+++|+.++.++.+++. +.+ .++|++||...+.+. +
T Consensus 107 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~------------------~ 168 (266)
T 3grp_A 107 NNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN------------------P 168 (266)
T ss_dssp ECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------------------------
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC------------------C
Confidence 999976311 1223456788899999999777666653 334 369999997654321 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
....|+.+|...+.+.+.++.. ..++|+++..+... ........+.... ....+.+.+|+|++++.+
T Consensus 169 ~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~----p~~r~~~~edvA~~v~~L 244 (266)
T 3grp_A 169 GQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMI----PMKRMGIGEEIAFATVYL 244 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTC----TTCSCBCHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcC----CCCCCcCHHHHHHHHHHH
Confidence 3378999999988887665432 45666666543110 0111222222211 134567899999999998
Q ss_pred HhcC----CCCeEEecCCC
Q 022112 213 AKRN----LTGIWNFTNPG 227 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~~ 227 (302)
+... .+.++++.+|.
T Consensus 245 ~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 245 ASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp HSGGGTTCCSCEEEESTTC
T ss_pred hCccccCccCCEEEECCCe
Confidence 8653 34588888864
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=145.69 Aligned_cols=195 Identities=15% Similarity=0.058 Sum_probs=136.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 34 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 113 (279)
T 3ctm_A 34 GKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTID 113 (279)
T ss_dssp TCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 358999999999999999999999998876 457899998888877642 599
Q ss_pred EEEEccccCCC--CCc-chhhhhHHHHHHHhHHH----HHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR--PNV-DWCESHKVETIRTNVVG----TLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 65 ~Vi~~a~~~~~--~~~-~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|||+||.... +.. .....++...+++|+.+ ++.+++.+++.+ .++|++||...+...
T Consensus 114 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~-------------- 179 (279)
T 3ctm_A 114 VFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN-------------- 179 (279)
T ss_dssp EEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---------------
T ss_pred EEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC--------------
Confidence 99999997631 011 33456778899999999 567777777665 469999997654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC-------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN-------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~-------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
..++...|+.+|...|.+++.+.. ...++|+++..+.... ...+...+.... ....+++.+|+|++
T Consensus 180 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----p~~~~~~~~dvA~~ 253 (279)
T 3ctm_A 180 --IPQLQAPYNTAKAACTHLAKSLAIEWAPFARVNTISPGYIDTDITDFASKDMKAKWWQLT----PLGREGLTQELVGG 253 (279)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECSBSSTTTSSCCHHHHHHHHHHS----TTCSCBCGGGTHHH
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHhcccCCEEEEeccCCccccccccChHHHHHHHHhC----CccCCcCHHHHHHH
Confidence 012336899999999998876432 2678888876653211 122222222111 12357899999999
Q ss_pred HHHHHhcC----CCCeEEecCCCc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++.++... .+..+++.++..
T Consensus 254 ~~~l~s~~~~~~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 254 YLYLASNASTFTTGSDVVIDGGYT 277 (279)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTCC
T ss_pred HHHHhCccccCccCCEEEECCCee
Confidence 99988752 235888888753
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=144.02 Aligned_cols=195 Identities=10% Similarity=0.048 Sum_probs=137.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 26 gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 105 (271)
T 4ibo_A 26 GRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVD 105 (271)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence 358999999999999999999999999877 568999999988887754 799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+||...... .+....++...+++|+.++.++++++... + .++|++||...+...
T Consensus 106 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~---------------- 169 (271)
T 4ibo_A 106 ILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELAR---------------- 169 (271)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC----------------
T ss_pred EEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCC----------------
Confidence 9999999763111 12245677889999999999998777543 3 369999986544311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ...+...+.... ....+...+|+|+
T Consensus 170 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~pedva~ 243 (271)
T 4ibo_A 170 --ATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKART----PAKRWGKPQELVG 243 (271)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHS----TTCSCBCGGGGHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcC----CCCCCcCHHHHHH
Confidence 23478999999999988765432 456666665431100 001112221111 1345678999999
Q ss_pred HHHHHHhcC----CCCeEEecCCCccC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+++.++... .+.++++.+|...+
T Consensus 244 ~v~~L~s~~~~~itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 244 TAVFLSASASDYVNGQIIYVDGGMLSV 270 (271)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTGGGB
T ss_pred HHHHHhCccccCCCCcEEEECCCeecc
Confidence 999988642 24589998886543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-18 Score=142.06 Aligned_cols=195 Identities=14% Similarity=0.075 Sum_probs=137.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------------eecCCCChhhHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------------GSGRLENRASLEA 56 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------------~~~dl~~~~~~~~ 56 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+
T Consensus 15 gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~ 94 (280)
T 3pgx_A 15 GRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALRE 94 (280)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 358999999999999999999999998875 3468999998888
Q ss_pred HHhhc-----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCC
Q 022112 57 DIAAV-----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSG 124 (302)
Q Consensus 57 ~~~~~-----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~ 124 (302)
++++. ++|++||+||...... .+....++...+++|+.++.++++++.. . +.++|++||...+...
T Consensus 95 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 172 (280)
T 3pgx_A 95 LVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKAT-- 172 (280)
T ss_dssp HHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCC--
Confidence 77654 8999999999763111 1124457788999999999999998743 2 3469999997655421
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc-----
Q 022112 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK----- 191 (302)
Q Consensus 125 ~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~----- 191 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. ....+...+.....
T Consensus 173 ----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~-~~~~~~~~~~~~~~~~~~~ 235 (280)
T 3pgx_A 173 ----------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMI-EPEAMMEIFARHPSFVHSF 235 (280)
T ss_dssp ----------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTC-CHHHHHHHHHHCGGGGGGS
T ss_pred ----------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCccc-chhhhhhhhhcCchhhhhh
Confidence 23378999999999987765332 6678888877643 22112111111110
Q ss_pred -c-ccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 192 -V-VNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 192 -~-~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
. ...+..+.+.+|+|++++.++... .+.++++.+|.
T Consensus 236 ~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 236 PPMPVQPNGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp CCBTTBCSSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred hhcccCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 0 111224889999999999988643 24588888764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-18 Score=141.53 Aligned_cols=199 Identities=14% Similarity=0.103 Sum_probs=135.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-~~d~V 66 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|++
T Consensus 10 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 89 (267)
T 3t4x_A 10 GKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDIL 89 (267)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCEE
Confidence 458999999999999999999999999877 457899999998888766 79999
Q ss_pred EEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+||....... +....++...+++|+.++.++++++.+ .+ .++|++||...+.+.
T Consensus 90 v~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 151 (267)
T 3t4x_A 90 INNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS------------------ 151 (267)
T ss_dssp EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC------------------
T ss_pred EECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC------------------
Confidence 999997631111 223456778899999998877776643 33 359999997665421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--hhhHHHHhccc---------------ccccccCCcc
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--RNFITKITRYE---------------KVVNIPNSMT 200 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~~~~~~~~~~~---------------~~~~~~~~~i 200 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..+....+ ..++....... ......+.+.
T Consensus 152 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 231 (267)
T 3t4x_A 152 QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENRPTSIIQRLI 231 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHCTTCSSCSCB
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccCCcccccCcc
Confidence 23478999999999998776432 3455433322211111 11111111100 0001135688
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+.+|+|++++.++... .+.++++.+|...+
T Consensus 232 ~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 232 RPEEIAHLVTFLSSPLSSAINGSALRIDGGLVRS 265 (267)
T ss_dssp CTHHHHHHHHHHHSGGGTTCCSCEEEESTTCSCS
T ss_pred CHHHHHHHHHHHcCccccCccCCeEEECCCcccc
Confidence 9999999999988742 24589999886655
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=139.69 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=133.2
Q ss_pred ccEEEEEcCCc-chHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTG-WIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG-~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+| .||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 101 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR 101 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhCC
Confidence 45899999998 5999999999999999876 568999999988887754 8
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----C-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----G-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|+|||+||...... ......++...+++|+.++.++++++... + .++|++||...+...
T Consensus 102 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------- 168 (266)
T 3o38_A 102 LDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ------------- 168 (266)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC-------------
T ss_pred CcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC-------------
Confidence 999999999763111 12245577889999999999999988764 2 358888886654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+++.++.. ..++|+++..+.... ...+...+... .....+.+.+|+
T Consensus 169 -----~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~----~~~~r~~~~~dv 239 (266)
T 3o38_A 169 -----HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELLDRLASD----EAFGRAAEPWEV 239 (266)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC-----------------C----CTTSSCCCHHHH
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhc----CCcCCCCCHHHH
Confidence 23478999999999988765332 556676665532110 01111111111 123457789999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
|++++.++... .+.++++.+|.
T Consensus 240 a~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 240 AATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred HHHHHHHcCccccCccCCEEEEcCCc
Confidence 99999988752 24588888763
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-18 Score=143.95 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=133.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 91 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 91 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3568999999999999999999999998876 347899999888777644
Q ss_pred CCCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
++|+|||+||.... +.......++...+++|+.++..+++++ ++.+ .++|++||...+.+.
T Consensus 92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 159 (267)
T 1iy8_A 92 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI------------ 159 (267)
T ss_dssp CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC------------
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC------------
Confidence 79999999997531 0112234577889999999888666554 4444 469999997654321
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-----chhhHH----HHhcccccccccC
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-----PRNFIT----KITRYEKVVNIPN 197 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-----~~~~~~----~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+.+.+.. ...++|+++..+.... ...+.. .+.... ...
T Consensus 160 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~ 229 (267)
T 1iy8_A 160 ------GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN----PSK 229 (267)
T ss_dssp ------SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC----TTC
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC----CCC
Confidence 2336899999999988765432 2667888776531100 000011 111110 123
Q ss_pred CcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 198 SMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
.+.+.+|+|++++.++... .+..+++.++...
T Consensus 230 r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 265 (267)
T 1iy8_A 230 RYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQSA 265 (267)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTTT
T ss_pred CCcCHHHHHHHHHHHcCccccCCCCCEEEECCCccc
Confidence 4778999999999988653 2348888887554
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=143.99 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=133.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 103 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIG 103 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCc
Confidence 458999999999999999999999999877 568999999988777654 799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH------hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD------KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~------~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|||+||...... .+....++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 104 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~-------------- 169 (279)
T 3sju_A 104 ILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV-------------- 169 (279)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC--------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC--------------
Confidence 9999999763111 1223456778899999999999998755 33 369999997654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhccc---------c------cc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYE---------K------VV 193 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~---------~------~~ 193 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+ +...+.... . ..
T Consensus 170 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (279)
T 3sju_A 170 ----MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETP-------MAERVREGYARHWGVTEQEVHERFNAK 238 (279)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSH-------HHHHHHHSCCSSSCCCHHHHHHHHHTT
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccch-------HHHHHHhhhhhcccCChHHHHHHHHhc
Confidence 23378999999999887665322 44566665432 222211100 0 00
Q ss_pred cccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 194 NIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
...+.+.+.+|+|++++.++... .+..+++.+|.
T Consensus 239 ~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 239 IPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp CTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred CCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 11345778999999999988653 34588888864
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-18 Score=142.88 Aligned_cols=193 Identities=12% Similarity=-0.002 Sum_probs=133.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 108 (271)
T 4iin_A 29 GKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGL 108 (271)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999999876 567999999888877654 89
Q ss_pred CEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||....... .....++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 109 d~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 173 (271)
T 4iin_A 109 SYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGN--------------- 173 (271)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---------------
T ss_pred CEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCC---------------
Confidence 999999997631111 224457788999999999988887754 23 369999987655421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+++.+... ..++|+++..+.. ..+................+.+.+|+|+++
T Consensus 174 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~---~~~~~~~~~~~~~~~~~~~~~~p~dvA~~i 247 (271)
T 4iin_A 174 ---MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMN---ANLKDELKADYVKNIPLNRLGSAKEVAEAV 247 (271)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC---------------CGGGCTTCSCBCHHHHHHHH
T ss_pred ---CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCch---hhhcHHHHHHHHhcCCcCCCcCHHHHHHHH
Confidence 23478999999999988765432 4566666654321 111111111000011234577899999999
Q ss_pred HHHHhcC----CCCeEEecCCC
Q 022112 210 IEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~ 227 (302)
+.++... .+.++++.+|.
T Consensus 248 ~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 248 AFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp HHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHhCCCcCCCcCCEEEeCCCe
Confidence 9988753 34588888764
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-18 Score=144.73 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=127.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhc---
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 5 ~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 84 (324)
T 3u9l_A 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIGE 84 (324)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 358999999999999999999999999874 568999999988887754
Q ss_pred --CCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 --KPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 --~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|+|||+||....+ .......+....+++|+.++.++++++ ++.+. ++|++||...+...
T Consensus 85 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~----------- 153 (324)
T 3u9l_A 85 DGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT----------- 153 (324)
T ss_dssp HSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC-----------
Confidence 899999999965211 112244567788999999999999998 44444 59999997765321
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-----Cch--hhHHHHhcccc-------
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-----NPR--NFITKITRYEK------- 191 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-----~~~--~~~~~~~~~~~------- 191 (302)
.+....|+.+|...|.+.+.+... .+++|+.+.++... .+. ...........
T Consensus 154 ------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (324)
T 3u9l_A 154 ------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPNAGLGEEI 227 (324)
T ss_dssp ------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHHHHHTTTTTHHHHH
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHhhccccccCCHHHH
Confidence 112368999999999988765322 67888887643210 010 01111111000
Q ss_pred ---cccccCCcccHhhHHHHHHHHHhcC
Q 022112 192 ---VVNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 192 ---~~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
......+..+.+|+|++++.+++.+
T Consensus 228 ~~~~~~l~~~~~~p~~vA~aiv~~~~~~ 255 (324)
T 3u9l_A 228 KKAFAAIVPPDADVSLVADAIVRVVGTA 255 (324)
T ss_dssp HHHHHHTSCTTCCTHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhcCC
Confidence 0001223368899999999999876
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=142.59 Aligned_cols=194 Identities=14% Similarity=-0.001 Sum_probs=135.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 99 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGL 99 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 358999999999999999999999999876 568999999888777644 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|++||+||...... .+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 100 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 165 (266)
T 4egf_A 100 DVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL-------------- 165 (266)
T ss_dssp SEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------------
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC--------------
Confidence 99999999763111 12234567889999999999998887543 3469999997765421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCC---CCchhhHHHHhcccccccccCCcccHhhH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDL---SNPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. .........+.... ....+...+|+
T Consensus 166 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~p~dv 237 (266)
T 4egf_A 166 ----PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARI----PLGRFAVPHEV 237 (266)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTC----TTSSCBCHHHH
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcC----CCCCCcCHHHH
Confidence 23478999999999988765432 4455555543210 00011111111111 12346789999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
|++++.++... .+.++++.+|..+
T Consensus 238 a~~v~~L~s~~~~~itG~~i~vdGG~~~ 265 (266)
T 4egf_A 238 SDAVVWLASDAASMINGVDIPVDGGYTM 265 (266)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHhCchhcCccCcEEEECCCccC
Confidence 99999988652 2458999887654
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-18 Score=141.92 Aligned_cols=184 Identities=15% Similarity=0.033 Sum_probs=131.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC---CcEEE-----------------------eecCCCChhhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS---IDFTY-----------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~-----------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
+++++|||||+|+||++++++|+++| ++|++ +.+|+++.+++.++++..
T Consensus 20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 99 (267)
T 1sny_A 20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 99 (267)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHhcC
Confidence 45689999999999999999999999 88776 457899998888877644
Q ss_pred --CCCEEEEccccCC-C-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----------------CCeEEEEcCCccccC
Q 022112 62 --KPTHVFNAAGVTG-R-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----------------GLILINYATGCIFEY 121 (302)
Q Consensus 62 --~~d~Vi~~a~~~~-~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------------~~~~v~~SS~~vy~~ 121 (302)
++|+|||+||... . +.......+....+++|+.++.++++++... ..++|++||...+..
T Consensus 100 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~ 179 (267)
T 1sny_A 100 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ 179 (267)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred CCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccccccc
Confidence 6999999999752 0 0122234577889999999999999988653 357999999876553
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccc
Q 022112 122 DSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVV 193 (302)
Q Consensus 122 ~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~ 193 (302)
.. +.++...|+.+|...+.+++.+... ..+||+++..+.. .
T Consensus 180 ~~---------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-~--------------- 228 (267)
T 1sny_A 180 GN---------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMG-G--------------- 228 (267)
T ss_dssp TC---------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTT-C---------------
T ss_pred CC---------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCC-C---------------
Confidence 21 1123368999999999988665322 5677777654311 0
Q ss_pred cccCCcccHhhHHHHHHHHHhcC---CCCeEEecCCCcc
Q 022112 194 NIPNSMTILDELLPISIEMAKRN---LTGIWNFTNPGVV 229 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~~~~~ 229 (302)
...++..+|+|+.++.++... ..|.|...++..+
T Consensus 229 --~~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 265 (267)
T 1sny_A 229 --SSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPL 265 (267)
T ss_dssp --TTCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBC
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCc
Confidence 013467899999999988753 3454544444444
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=146.96 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=132.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.++++.. +
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 86 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 358999999999999999999999999876 356899998888877643 6
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHH----HHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLT----LADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~----ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|+|||+||.. ...++...+++|+.++.. +++.+++. +.++|++||...+.+.
T Consensus 87 id~lv~~Ag~~-------~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 147 (267)
T 2gdz_A 87 LDILVNNAGVN-------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------ 147 (267)
T ss_dssp CCEEEECCCCC-------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------
T ss_pred CCEEEECCCCC-------ChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC------------
Confidence 89999999975 134667888999886554 45555543 2359999997765421
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhh------cC----ceEEeeecccCCCCCCchhhH-HHHhcc-----ccc--cccc
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNF------EN----VCTLRVRMPISSDLSNPRNFI-TKITRY-----EKV--VNIP 196 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~------~~----~~~lR~~~v~g~~~~~~~~~~-~~~~~~-----~~~--~~~~ 196 (302)
+....|+.+|...+.+.+.+ .. ...++|+++..+.. ..+. ...... ... ....
T Consensus 148 ------~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (267)
T 2gdz_A 148 ------AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAIL---ESIEKEENMGQYIEYKDHIKDMIKY 218 (267)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHH---HGGGCHHHHGGGGGGHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhh---hccccccccchhhhHHHHHHHHhcc
Confidence 23368999999999887653 11 15567776654310 0000 000000 000 0012
Q ss_pred CCcccHhhHHHHHHHHHhcC--CCCeEEecCCCccCHHHH
Q 022112 197 NSMTILDELLPISIEMAKRN--LTGIWNFTNPGVVSHNEI 234 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e~ 234 (302)
..+++.+|+|++++.+++.. .+.++++.+++.+++.|+
T Consensus 219 ~~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 219 YGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp HCCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECCC
T ss_pred ccCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccCc
Confidence 34789999999999998753 345899999887776654
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=139.00 Aligned_cols=192 Identities=15% Similarity=0.050 Sum_probs=134.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 83 (246)
T 2uvd_A 4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQV 83 (246)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 356889998888777643 79
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||...... .+....++...+++|+.++.++.+++. +.+ .++|++||...+.+.
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 148 (246)
T 2uvd_A 84 DILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN--------------- 148 (246)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC---------------
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC---------------
Confidence 99999999763111 122345778899999999777766654 344 369999997654321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.+.. ...++|+++..+.... ...+...+.... ....+.+.+|+|++
T Consensus 149 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~----p~~~~~~~~dvA~~ 221 (246)
T 2uvd_A 149 ---PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLI----PAAQFGEAQDIANA 221 (246)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTC----TTCSCBCHHHHHHH
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcC----CCCCCcCHHHHHHH
Confidence 1236899999998888765432 2678888876643211 112222222211 12357899999999
Q ss_pred HHHHHhcC----CCCeEEecCCC
Q 022112 209 SIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~ 227 (302)
++.++... .+..+++.+|.
T Consensus 222 ~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 222 VTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp HHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHcCchhcCCCCCEEEECcCc
Confidence 99988642 24488888764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=147.04 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=138.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 27 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 106 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRI 106 (277)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999877 567999999888777654 89
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH-----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD-----KGLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~-----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||.... +.......++...+++|+.++.++++++.. .+.++|++||...+.+.
T Consensus 107 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 171 (277)
T 4fc7_A 107 DILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ--------------- 171 (277)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC---------------
T ss_pred CEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC---------------
Confidence 999999996531 111234567888999999999999998743 24469999998665422
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCC----CCchhhHHHHhcccccccccCCcccHhhH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDL----SNPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~----~~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. .............. ....+...+|+
T Consensus 172 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----p~~r~~~p~dv 244 (277)
T 4fc7_A 172 ---ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS----PLQRLGNKTEI 244 (277)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTS----TTSSCBCHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccC----CCCCCcCHHHH
Confidence 13378999999999988765332 5566777665310 00111122221111 12346789999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|++++.++... .+.++++.+|..++
T Consensus 245 A~~v~fL~s~~~~~itG~~i~vdGG~~~~ 273 (277)
T 4fc7_A 245 AHSVLYLASPLASYVTGAVLVADGGAWLT 273 (277)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTHHHH
T ss_pred HHHHHHHcCCccCCcCCCEEEECCCcccC
Confidence 99999988752 34589998876554
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-17 Score=142.17 Aligned_cols=192 Identities=7% Similarity=-0.026 Sum_probs=137.6
Q ss_pred cEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+ |+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|
T Consensus 22 k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD 101 (285)
T 2p91_A 22 KRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGSLD 101 (285)
T ss_dssp CEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSCCC
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 579999999 99999999999999999876 346889998888777654 799
Q ss_pred EEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 65 ~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|||+||.... +.......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 102 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 168 (285)
T 2p91_A 102 IIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV------------- 168 (285)
T ss_dssp EEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC-------------
T ss_pred EEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC-------------
Confidence 99999997520 0112344577889999999999999999764 2479999997654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.+.. ...++|+++..+..... ..+...+....+ ...+.+++|
T Consensus 169 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p----~~~~~~~~d 239 (285)
T 2p91_A 169 -----PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNP----FGKPITIED 239 (285)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHST----TSSCCCHHH
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCC----CCCCcCHHH
Confidence 2336899999999998766432 16788998887643211 122222222111 234678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+|++++.++... .+..|++.++..
T Consensus 240 va~~~~~l~s~~~~~~tG~~~~vdgg~~ 267 (285)
T 2p91_A 240 VGDTAVFLCSDWARAITGEVVHVDNGYH 267 (285)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 999999988642 234788888743
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=138.79 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=130.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+|
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l 86 (249)
T 2ew8_A 7 DKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDIL 86 (249)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCEE
Confidence 468999999999999999999999998876 356888888887776532 79999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHH----HHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADV----CRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+||...... ......++...+++|+.++.+++++ +++.+ .++|++||...+.+.
T Consensus 87 v~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 148 (249)
T 2ew8_A 87 VNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI------------------ 148 (249)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC------------------
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC------------------
Confidence 99999763111 1224457788999999998888877 44444 369999998766421
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhH-H--HHhcccccccccCCcccHhhHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFI-T--KITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~-~--~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... .+. . ..... .......+.+.+|+|+++
T Consensus 149 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~--~~~~~~~~~~p~dva~~~ 224 (249)
T 2ew8_A 149 EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEA--SALSAMFDVLPN--MLQAIPRLQVPLDLTGAA 224 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------C--TTSSSCSCCCTHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchh--ccccchhhHHHH--hhCccCCCCCHHHHHHHH
Confidence 23378999999999988765321 667777776642210 010 0 11000 001123578999999999
Q ss_pred HHHHhcC----CCCeEEecCCC
Q 022112 210 IEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~ 227 (302)
+.++... .+..+++.++.
T Consensus 225 ~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 225 AFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp HHHTSGGGTTCCSCEEEESSSC
T ss_pred HHHcCcccCCCCCcEEEECCCc
Confidence 9988642 23478887764
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-18 Score=142.98 Aligned_cols=193 Identities=14% Similarity=0.080 Sum_probs=137.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 6 ~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~lv 85 (263)
T 2a4k_A 6 GKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVA 85 (263)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 468999999999999999999999999877 457999999888877653 789999
Q ss_pred EccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 68 ~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
|+||..... .......++...+++|+.++.++++++... +.++|++||...++ . +..
T Consensus 86 nnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-~------------------~~~ 146 (263)
T 2a4k_A 86 HFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-A------------------FGL 146 (263)
T ss_dssp EGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-H------------------HHH
T ss_pred ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-C------------------CCc
Confidence 999976311 112234566788999999999999999765 35799999987662 1 123
Q ss_pred CchhhhHHHHHHHHHhhc----C----ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 144 SFYSKTKAMVEELLKNFE----N----VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~----~----~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
..|+.+|...+.+.+.++ . ...++|+++..+.... ...+...+....+ ...+.+.+|+|++++.++.
T Consensus 147 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p----~~~~~~p~dvA~~v~~l~s 222 (263)
T 2a4k_A 147 AHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP----LGRAGRPEEVAQAALFLLS 222 (263)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST----TCSCBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCC----CCCCcCHHHHHHHHHHHhC
Confidence 689999998888776542 2 2778898887653211 1122222222111 2346789999999999886
Q ss_pred cC----CCCeEEecCCCcc
Q 022112 215 RN----LTGIWNFTNPGVV 229 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~~ 229 (302)
.. .+..+++.++...
T Consensus 223 ~~~~~~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 223 EESAYITGQALYVDGGRSI 241 (263)
T ss_dssp GGGTTCCSCEEEESTTTTT
T ss_pred ccccCCcCCEEEECCCccc
Confidence 53 2348888887554
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=139.52 Aligned_cols=172 Identities=14% Similarity=0.028 Sum_probs=118.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++||||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+||
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li 83 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV 83 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3468999999999999999999999999887 457899998888777643 799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||...... ......++...+++|+.++.++++.+ ++.+. ++|++||...+... +
T Consensus 84 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------------------~ 145 (234)
T 2ehd_A 84 NNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPF------------------K 145 (234)
T ss_dssp ECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCC------------------T
T ss_pred ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCC------------------C
Confidence 9999752111 12244577889999999997665554 44444 59999997665421 2
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+++.+.. ...+||+++..+.. ... . .. ..++..+|+|++++.++
T Consensus 146 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------~~~-~-~~-----~~~~~~~dvA~~~~~l~ 211 (234)
T 2ehd_A 146 GGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFA-------GNT-P-GQ-----AWKLKPEDVAQAVLFAL 211 (234)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------CCHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcc-------ccc-c-cc-----cCCCCHHHHHHHHHHHh
Confidence 337899999998887765432 15566666544311 100 0 00 11578999999999998
Q ss_pred hcC
Q 022112 214 KRN 216 (302)
Q Consensus 214 ~~~ 216 (302)
..+
T Consensus 212 ~~~ 214 (234)
T 2ehd_A 212 EMP 214 (234)
T ss_dssp HSC
T ss_pred CCC
Confidence 764
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=140.60 Aligned_cols=194 Identities=12% Similarity=0.010 Sum_probs=133.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 108 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLDI 108 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 358999999999999999999999999876 347899998888777643 7999
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-----CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCR----DKG-----LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-----~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|||+||..... ..+....++...+++|+.++.++++++. +.+ .++|++||...+...
T Consensus 109 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~------------- 175 (276)
T 2b4q_A 109 LVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM------------- 175 (276)
T ss_dssp EEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC-------------
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC-------------
Confidence 99999976311 1123345778899999999988877764 333 369999997765421
Q ss_pred CCCCCCCCC-chhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc-hhhHHHHhcccccccccCCcccHhhH
Q 022112 136 EDTPNFVGS-FYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP-RNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 136 ~~~~~~~~~-~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
+... .|+.+|...+.+.+.+... ..++|+++..+..... ..+...+..... . ....+.+.+|+
T Consensus 176 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~-~-p~~r~~~p~dv 248 (276)
T 2b4q_A 176 -----GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSAS-I-PMGRWGRPEEM 248 (276)
T ss_dssp -----CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHT-S-TTSSCCCHHHH
T ss_pred -----CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcC-C-CCCCcCCHHHH
Confidence 1224 8999999999988765322 5677777665421000 001111111000 0 12357899999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
|++++.++... .+.++++.++.
T Consensus 249 A~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 249 AALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHHhCccccCCCCCEEEeCCCc
Confidence 99999988653 23488887764
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-17 Score=140.43 Aligned_cols=197 Identities=13% Similarity=0.026 Sum_probs=132.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 4 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 83 (260)
T 1x1t_A 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGR 83 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999998876 236888888887777643 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 84 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 149 (260)
T 1x1t_A 84 IDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS-------------- 149 (260)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC--------------
Confidence 999999999763111 1224457788999999999998888753 34 469999997765421
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCc-hhhHH-------HHhccc-ccccccCCc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNP-RNFIT-------KITRYE-KVVNIPNSM 199 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~-~~~~~-------~~~~~~-~~~~~~~~~ 199 (302)
+....|+.+|...+.+.+.+.. ...++|+++..+..... ..+.. ...... ........+
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 225 (260)
T 1x1t_A 150 ----ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQF 225 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCCC
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCCCCC
Confidence 2337899999999988765432 16688888876532110 00000 000000 000012457
Q ss_pred ccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 200 TILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
.+.+|+|++++.++... .+..+++.++..
T Consensus 226 ~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~~ 258 (260)
T 1x1t_A 226 VTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCHHHHHHHHHHHhChhhcCCCCCEEEECCCcc
Confidence 89999999999988652 245888887643
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=140.49 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=135.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~ 73 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+|||+||..
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag~~ 85 (246)
T 2ag5_A 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGFV 85 (246)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCccC
Confidence 468999999999999999999999998876 357899999988776654 799999999976
Q ss_pred CCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 74 GRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
.... .+....++...+++|+.++.++++++.. .+ .++|++||...+... + +....|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------~--~~~~~Y~ 148 (246)
T 2ag5_A 86 HHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG---------------V--VNRCVYS 148 (246)
T ss_dssp CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC---------------C--TTBHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC---------------C--CCCccHH
Confidence 3111 1123456778899999999999988753 33 369999997654321 0 0236899
Q ss_pred hhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-------chhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 148 KTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-------PRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
.+|...+.+.+.+.. ...+||++++++.... ...+...+.... ....+.+.+|+|++++.+
T Consensus 149 ~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dvA~~v~~l 224 (246)
T 2ag5_A 149 TTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQ----KTGRFATAEEIAMLCVYL 224 (246)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTC----TTSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcC----CCCCCCCHHHHHHHHHHH
Confidence 999999998876532 2678888887642100 001111111110 123477899999999998
Q ss_pred HhcC----CCCeEEecCCC
Q 022112 213 AKRN----LTGIWNFTNPG 227 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~~ 227 (302)
+... .+..+++.++.
T Consensus 225 ~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 225 ASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp HSGGGTTCCSCEEEECTTG
T ss_pred hCccccCCCCCEEEECCCc
Confidence 8642 24588888764
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=140.66 Aligned_cols=194 Identities=7% Similarity=-0.039 Sum_probs=138.4
Q ss_pred ccEEEEEcCCcc--hHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGW--IGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~--iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++|||||+|+ ||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVG 86 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHHS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 468999999998 999999999999999876 568999999888877654
Q ss_pred CCCEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 ~~d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+|+... .+.......++...+++|+.++.++++++... +.++|++||...+..
T Consensus 87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------ 154 (266)
T 3oig_A 87 VIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV------------ 154 (266)
T ss_dssp CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC------------
T ss_pred CeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc------------
Confidence 7999999999762 11122344567789999999999999999875 336999998765432
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+..... ..+...+.... ....+...
T Consensus 155 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----~~~~~~~p 224 (266)
T 3oig_A 155 ------MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERA----PLRRTTTP 224 (266)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHS----TTSSCCCH
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcC----CCCCCCCH
Confidence 123478999999999987765332 4566666655321111 12222222221 12346789
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+|+|++++.++... .+.++++.+|...
T Consensus 225 ~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 225 EEVGDTAAFLFSDMSRGITGENLHVDSGFHI 255 (266)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHcCCchhcCcCCEEEECCCeEE
Confidence 99999999998752 3458888887543
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=137.92 Aligned_cols=193 Identities=13% Similarity=0.060 Sum_probs=132.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhh----c-CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAA----V-KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~----~-~~d~Vi~~a~~ 72 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++ +++.+++++ . ++|++||+|+.
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~Ag~ 80 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHAAAV 80 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHTCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhhCcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 468999999999999999999999999887 3568888 666655542 2 79999999997
Q ss_pred CCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 73 TGR-PNVDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
... +..+....++...+++|+.++.++++++. +.+. ++|++||...+.... .++...|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----------------~~~~~~Y 144 (239)
T 2ekp_A 81 NVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG----------------PVPIPAY 144 (239)
T ss_dssp CCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT----------------TSCCHHH
T ss_pred CCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC----------------CCCCccH
Confidence 531 11123456788899999999999988874 3343 699999987665220 1234789
Q ss_pred hhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 147 SKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
+.+|...+.+.+.+.. ...+||+++..+.... ...+...+.... ....+...+|+|++++.++..
T Consensus 145 ~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~dvA~~~~~l~s~ 220 (239)
T 2ekp_A 145 TTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARI----PMGRWARPEEIARVAAVLCGD 220 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTC----TTSSCBCHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcC----CCCCCcCHHHHHHHHHHHcCc
Confidence 9999999988766532 2678888876642100 011111221111 123477899999999998864
Q ss_pred C----CCCeEEecCCC
Q 022112 216 N----LTGIWNFTNPG 227 (302)
Q Consensus 216 ~----~~~~~~~~~~~ 227 (302)
. .+..+++.++.
T Consensus 221 ~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 221 EAEYLTGQAVAVDGGF 236 (239)
T ss_dssp GGTTCCSCEEEESTTT
T ss_pred hhcCCCCCEEEECCCc
Confidence 2 23478887763
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-17 Score=140.96 Aligned_cols=195 Identities=12% Similarity=-0.019 Sum_probs=141.1
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+| +||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 109 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGSL 109 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 35899999997 9999999999999999876 568999999988887754 89
Q ss_pred CEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||... .+..+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 110 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~------------- 176 (296)
T 3k31_A 110 DFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV------------- 176 (296)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-------------
T ss_pred CEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC-------------
Confidence 99999999762 11123345678899999999999999999764 3369999987654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchh---hHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRN---FITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~---~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+....... +...+.... ....+...+|
T Consensus 177 -----~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~ped 247 (296)
T 3k31_A 177 -----PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNS----PLRRNTTLDD 247 (296)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHS----TTSSCCCHHH
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcC----CCCCCCCHHH
Confidence 23478999999999988765322 567777776653322111 122222111 1234668899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|++++.++... .+.++++.+|..+.
T Consensus 248 vA~~v~fL~s~~a~~itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 248 VGGAALYLLSDLGRGTTGETVHVDCGYHVV 277 (296)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHcCCccCCccCCEEEECCCcccc
Confidence 999999998752 24589998886544
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=141.56 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=133.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 87 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGEI 87 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCSE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999876 568999999988877654 79
Q ss_pred CEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccc-cCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIF-EYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy-~~~~~~~~~~~~~~~e~~ 137 (302)
|++||+||... .+..+....++...+++|+.++.++++++... +.++|++||...+ ...
T Consensus 88 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------------- 152 (259)
T 3edm_A 88 HGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG--------------- 152 (259)
T ss_dssp EEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS---------------
T ss_pred CEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC---------------
Confidence 99999998552 11112344567889999999999999999875 3369999998765 211
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCc--hhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..+.|+++..+..... ..+...+.. ......+.+.+|+|++
T Consensus 153 ---~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~----~~p~~r~~~pedva~~ 225 (259)
T 3edm_A 153 ---PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVRERVAG----ATSLKREGSSEDVAGL 225 (259)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC--------------------------CCBCHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHHHHHHh----cCCCCCCcCHHHHHHH
Confidence 23368999999999988665322 3455555543311000 001111100 0113456789999999
Q ss_pred HHHHHhcC----CCCeEEecCCCccCH
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVVSH 231 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~s~ 231 (302)
++.++... .+..+++.++...+.
T Consensus 226 v~~L~s~~~~~itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 226 VAFLASDDAAYVTGACYDINGGVLFSE 252 (259)
T ss_dssp HHHHHSGGGTTCCSCEEEESBCSSBC-
T ss_pred HHHHcCccccCccCCEEEECCCcCCCC
Confidence 99988653 345899988755443
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=135.69 Aligned_cols=192 Identities=15% Similarity=0.068 Sum_probs=135.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+|||+
T Consensus 5 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn~ 84 (245)
T 1uls_A 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVHY 84 (245)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 468999999999999999999999999887 357999999888777643 69999999
Q ss_pred cccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
||...... ......++...+++|+.++.++++++.+. + .++|++||...++. +..
T Consensus 85 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~-------------------~~~ 145 (245)
T 1uls_A 85 AGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLGN-------------------LGQ 145 (245)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGCC-------------------TTC
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcCC-------------------CCc
Confidence 99753111 11234567789999999999998888653 3 35899988773331 123
Q ss_pred CchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 144 SFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
..|+.+|...+.+.+.+.. ...++|+++..+.... ...+...+....+ ...+.+.+|+|++++.++.
T Consensus 146 ~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p----~~~~~~~~dvA~~v~~l~s 221 (245)
T 1uls_A 146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP----LGRAGKPLEVAYAALFLLS 221 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT----TCSCBCHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCC----CCCCcCHHHHHHHHHHHhC
Confidence 6899999999888765432 2678888876543211 1122222221111 1346789999999999886
Q ss_pred cC----CCCeEEecCCCc
Q 022112 215 RN----LTGIWNFTNPGV 228 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~ 228 (302)
.. .+..+++.++..
T Consensus 222 ~~~~~~tG~~~~vdgG~~ 239 (245)
T 1uls_A 222 DESSFITGQVLFVDGGRT 239 (245)
T ss_dssp GGGTTCCSCEEEESTTTT
T ss_pred chhcCCcCCEEEECCCcc
Confidence 52 244788877643
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-17 Score=138.90 Aligned_cols=193 Identities=15% Similarity=0.066 Sum_probs=133.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. +
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 99 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 99 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3468999999999999999999999999876 357899999888777643 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCcc-ccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCI-FEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~v-y~~~~~~~~~~~~~~~e 135 (302)
+|+|||+||...... ......++...+++|+.++.++++++.. .+ .++|++||..+ +.
T Consensus 100 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~--------------- 164 (267)
T 1vl8_A 100 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV--------------- 164 (267)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC---------------
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhcc---------------
Confidence 999999999763111 1123456778899999999999888743 33 36999998652 21
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+++.+.. ...++|+++..+.... ...+...+.... ....+.+.+|
T Consensus 165 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~~~~~p~d 237 (267)
T 1vl8_A 165 ---TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRI----PLGRTGVPED 237 (267)
T ss_dssp ---CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTC----TTSSCBCGGG
T ss_pred ---CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhC----CCCCCcCHHH
Confidence 112347899999999998766532 2668888876542100 001111111111 1234778999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+|++++.++... .+..+++.+|.
T Consensus 238 vA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 238 LKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp GHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHcCccccCCcCCeEEECCCC
Confidence 999999988652 23478887764
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-18 Score=144.36 Aligned_cols=209 Identities=12% Similarity=0.057 Sum_probs=142.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 27 k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 106 (297)
T 1xhl_A 27 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGK 106 (297)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 57999999999999999999999998876 346899998888777643 7
Q ss_pred CCEEEEccccCCCCC---cchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN---VDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~---~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|+|||+||...... ......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 107 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~~~------------- 173 (297)
T 1xhl_A 107 IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQA------------- 173 (297)
T ss_dssp CCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSC-------------
T ss_pred CCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhccCC-------------
Confidence 999999999753111 12234577889999999999999888653 3479999997665421
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---chhh---HHHHhcccccccccCCccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PRNF---ITKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~~~---~~~~~~~~~~~~~~~~~i~ 201 (302)
.+....|+.+|...+.+.+.+.. ...++|+++..+.... .... ................+..
T Consensus 174 ----~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 249 (297)
T 1xhl_A 174 ----HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGK 249 (297)
T ss_dssp ----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTTSSCBC
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcCCCCCCcC
Confidence 02336899999999988766531 2678888876642100 0000 0001100000001235788
Q ss_pred HhhHHHHHHHHHhcC-----CCCeEEecCCCccCHHHHHHHHHh
Q 022112 202 LDELLPISIEMAKRN-----LTGIWNFTNPGVVSHNEILEMYRQ 240 (302)
Q Consensus 202 v~D~a~~~~~~~~~~-----~~~~~~~~~~~~~s~~e~~~~~~~ 240 (302)
.+|+|++++.++... .+..+++.++....+.+.+..+.+
T Consensus 250 pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 250 PEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS 293 (297)
T ss_dssp HHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred HHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence 999999999988642 245899998877766655444443
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.1e-18 Score=142.17 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=123.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lV 107 (272)
T 4dyv_A 28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDVLF 107 (272)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 357999999999999999999999999887 578999999988887754 899999
Q ss_pred EccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK-------GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 68 ~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|+||.... +..+....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 108 nnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~---------------- 171 (272)
T 4dyv_A 108 NNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR---------------- 171 (272)
T ss_dssp ECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC----------------
T ss_pred ECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC----------------
Confidence 99997531 1112345677899999999988888877543 2469999997654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc---cccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK---VVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.++.. ..++|+.+..+. ...+..... .......+..++|+|+
T Consensus 172 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-------~~~~~~~~~~~~~~~~~~~~~~pedvA~ 242 (272)
T 4dyv_A 172 --PYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPM-------AQKMKAGVPQADLSIKVEPVMDVAHVAS 242 (272)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-------------------------------CHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChh-------hhhhcccchhhhhcccccCCCCHHHHHH
Confidence 23478999999999998765432 445666655431 111111110 0012234778999999
Q ss_pred HHHHHHhcCC
Q 022112 208 ISIEMAKRNL 217 (302)
Q Consensus 208 ~~~~~~~~~~ 217 (302)
+++.++..+.
T Consensus 243 ~v~fL~s~~~ 252 (272)
T 4dyv_A 243 AVVYMASLPL 252 (272)
T ss_dssp HHHHHHHSCT
T ss_pred HHHHHhCCCC
Confidence 9999998753
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-17 Score=138.32 Aligned_cols=193 Identities=9% Similarity=0.034 Sum_probs=135.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 97 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHL 97 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999999876 568999999988887754 89
Q ss_pred CEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|++||+||....... +....++...+++|+.++.++++++... +.++|++||..... .+
T Consensus 98 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------------~~ 160 (270)
T 3is3_A 98 DIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------------FS 160 (270)
T ss_dssp CEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------------CC
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------------CC
Confidence 999999997631111 2245678889999999999999999875 34799998865211 11
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-------------chhhHHHHhcccccccccCC
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-------------PRNFITKITRYEKVVNIPNS 198 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 198 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+.... .......+... ...+.
T Consensus 161 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r 236 (270)
T 3is3_A 161 VPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHA----SPLHR 236 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHH----STTCS
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhc----CCCCC
Confidence 223478999999999988765432 556777665542100 00001111000 11334
Q ss_pred cccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 199 MTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+.+.+|+|++++.++... .+..+++.+|.
T Consensus 237 ~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 237 NGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 678999999999988643 24488888763
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=138.80 Aligned_cols=192 Identities=10% Similarity=0.042 Sum_probs=130.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee---------------cCCCChhhHHHHHhhc-CCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS---------------GRLENRASLEADIAAV-KPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~---------------~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~~~ 76 (302)
.++++|||||+|+||+++++.|+++|++|++.. +|+ .+++..+++.. ++|+|||+||.....
T Consensus 18 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~~iD~lv~~Ag~~~~~ 95 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDL--RKDLDLLFEKVKEVDILVLNAGGPKAG 95 (249)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCT--TTCHHHHHHHSCCCSEEEECCCCCCCB
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeH--HHHHHHHHHHhcCCCEEEECCCCCCCC
Confidence 457899999999999999999999999988732 566 34556555544 899999999975311
Q ss_pred C-cchhhhhHHHHHHHhHHHHHHHHHH----HHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 77 N-VDWCESHKVETIRTNVVGTLTLADV----CRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 77 ~-~~~~~~~~~~~~~~n~~~~~~ll~~----~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
. .+....++...+++|+.++.++.++ +++.+. ++|++||...+... +....|+.+|
T Consensus 96 ~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~~sK 157 (249)
T 1o5i_A 96 FFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI------------------ENLYTSNSAR 157 (249)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------TTBHHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC------------------CCCchHHHHH
Confidence 1 1123456788899999997766544 445554 59999998776522 2336899999
Q ss_pred HHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHH-HHhcccccccccCCcccHhhHHHHHHHHHhcC----
Q 022112 151 AMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFIT-KITRYEKVVNIPNSMTILDELLPISIEMAKRN---- 216 (302)
Q Consensus 151 ~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---- 216 (302)
...+.+.+.+.. ...++|+++.++.... ...+.. .+.... ....+.+.+|+|++++.++...
T Consensus 158 ~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~----p~~~~~~~~dvA~~i~~l~s~~~~~~ 233 (249)
T 1o5i_A 158 MALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQI----PMRRMAKPEEIASVVAFLCSEKASYL 233 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTS----TTSSCBCHHHHHHHHHHHHSGGGTTC
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHHHhcC----CCCCCcCHHHHHHHHHHHcCccccCC
Confidence 999988766432 1678888887652100 011111 221111 1245789999999999988652
Q ss_pred CCCeEEecCCCc
Q 022112 217 LTGIWNFTNPGV 228 (302)
Q Consensus 217 ~~~~~~~~~~~~ 228 (302)
.+..|++.++..
T Consensus 234 tG~~~~vdgG~~ 245 (249)
T 1o5i_A 234 TGQTIVVDGGLS 245 (249)
T ss_dssp CSCEEEESTTCC
T ss_pred CCCEEEECCCcc
Confidence 245888888743
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-17 Score=138.76 Aligned_cols=197 Identities=13% Similarity=0.021 Sum_probs=135.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 108 (283)
T 3v8b_A 29 PVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDI 108 (283)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 47999999999999999999999999877 578999999988887754 8999
Q ss_pred EEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+||+||... .+..+....++...+++|+.++.++++++ ++.+ .++|++||...+...
T Consensus 109 lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~---------------- 172 (283)
T 3v8b_A 109 VVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF---------------- 172 (283)
T ss_dssp EEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----------------
T ss_pred EEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC----------------
Confidence 999999752 11123345677889999999999999988 4444 469999997654311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh---ccc---ccccccCCcccHhh
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT---RYE---KVVNIPNSMTILDE 204 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~---~~~---~~~~~~~~~i~v~D 204 (302)
+.+....|+.+|...+.+.+.++.. ..++|+++..+............. ... ..+.....+...+|
T Consensus 173 ~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~ped 252 (283)
T 3v8b_A 173 TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPITDGQPGRSED 252 (283)
T ss_dssp CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGGGTTCCBCHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCccccCCCCCHHH
Confidence 1123478999999999988765322 557777776543211100000000 000 00001145678899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+|++++.++... .+.++++.+|.
T Consensus 253 vA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 253 VAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp HHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHHcCccccCCcCCEEEECcCc
Confidence 999999988642 24488887763
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=140.59 Aligned_cols=194 Identities=13% Similarity=0.065 Sum_probs=137.9
Q ss_pred ccEEEEEcCCcc--hHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGW--IGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~--iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+ ||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 110 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWGKL 110 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 357999999988 999999999999999876 568999999988877654 89
Q ss_pred CEEEEccccCC-----CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG-----RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~-----~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||... .+.......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 111 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------- 177 (293)
T 3grk_A 111 DFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM------------- 177 (293)
T ss_dssp SEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC-------------
T ss_pred CEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC-------------
Confidence 99999999762 11123345677889999999999999998764 3369999997665421
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+..... ..+...+.... ....+...+|
T Consensus 178 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~r~~~ped 248 (293)
T 3grk_A 178 -----PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNA----PLRRTVTIDE 248 (293)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHS----TTSSCCCHHH
T ss_pred -----CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcC----CCCCCCCHHH
Confidence 23478999999999988765422 5567777665422111 11222222111 1234678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+|++++.++... .+..+++.+|..+
T Consensus 249 vA~~v~~L~s~~~~~itG~~i~vdGG~~~ 277 (293)
T 3grk_A 249 VGDVGLYFLSDLSRSVTGEVHHADSGYHV 277 (293)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHcCccccCCcceEEEECCCccc
Confidence 999999988752 2458999888654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-17 Score=138.82 Aligned_cols=204 Identities=12% Similarity=-0.026 Sum_probs=138.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|+||
T Consensus 8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv 87 (270)
T 1yde_A 8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV 87 (270)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3468999999999999999999999999876 468999999988877654 799999
Q ss_pred EccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||.... +..+....++...+++|+.++.++++++.. .+.++|++||...+.+. +
T Consensus 88 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~ 149 (270)
T 1yde_A 88 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ------------------A 149 (270)
T ss_dssp ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC------------------T
T ss_pred ECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCC------------------C
Confidence 99997521 111123456788999999999999988853 35579999997543211 1
Q ss_pred CCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC----chhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN----PRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
....|+.+|...+.+.+.++. ...++|++++++.... .......+....... ....+...+|+|+++
T Consensus 150 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~p~dva~~v 228 (270)
T 1yde_A 150 QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ-PLGRMGQPAEVGAAA 228 (270)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS-TTSSCBCHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcC-CCCCCcCHHHHHHHH
Confidence 236899999999998876532 2678888887641100 000000111000000 123467899999999
Q ss_pred HHHHhcC---CCCeEEecCCCccCHHHHH
Q 022112 210 IEMAKRN---LTGIWNFTNPGVVSHNEIL 235 (302)
Q Consensus 210 ~~~~~~~---~~~~~~~~~~~~~s~~e~~ 235 (302)
+.++... .+..+++.+|..+...+..
T Consensus 229 ~~L~s~~~~itG~~i~vdGG~~~~~~~~~ 257 (270)
T 1yde_A 229 VFLASEANFCTGIELLVTGGAELGYGCKA 257 (270)
T ss_dssp HHHHHHCTTCCSCEEEESTTTTSCC----
T ss_pred HHHcccCCCcCCCEEEECCCeecccCcCc
Confidence 9888642 2348999988766654433
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=139.31 Aligned_cols=195 Identities=14% Similarity=0.070 Sum_probs=133.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. +
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999998876 346888988887777643 7
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----C--CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----G--LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|+|||+||...... .+....++...+++|+.++.++++++.+. + .++|++||...+.+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 148 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF------------- 148 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-------------
Confidence 999999999763111 12244577889999999999999888653 4 479999997654421
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh---cc--cc----cc--ccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT---RY--EK----VV--NIP 196 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~---~~--~~----~~--~~~ 196 (302)
+....|+.+|...+.+.+.+... ..++|+++..+.. ..+..... .. .. .. ...
T Consensus 149 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 220 (258)
T 3a28_C 149 -----PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMW---EQIDAELSKINGKPIGENFKEYSSSIAL 220 (258)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHH---HHHHHHHHHHHCCCTTHHHHHHHTTCTT
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhh---hhhhhhhccccCCchHHHHHHHHhcCCC
Confidence 23378999999999887665322 5567776644210 01110000 00 00 00 012
Q ss_pred CCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 197 NSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
..+.+.+|+|++++.++... .+..+++.+|...
T Consensus 221 ~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 221 GRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGMLY 257 (258)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSCC
T ss_pred CCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCEec
Confidence 34788999999999988653 2348888877543
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=139.14 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=133.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC--CcEEE---------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTY---------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
|++++|||||+|+||++++++|+++| +.|+. +.+|++|.+++.+++++. ++|
T Consensus 1 Mgk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id 80 (254)
T 3kzv_A 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKID 80 (254)
T ss_dssp -CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCcc
Confidence 35689999999999999999999985 55554 678999999988887754 899
Q ss_pred EEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVC----RDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+||... .+.......++...+++|+.++.++++++ ++.+.++|++||...+...
T Consensus 81 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~~~---------------- 144 (254)
T 3kzv_A 81 SLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNMYF---------------- 144 (254)
T ss_dssp EEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCCSS----------------
T ss_pred EEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhccCC----------------
Confidence 9999999752 11112345677889999999999999988 4556679999997654421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc------eEEeeecccCCCCCC----------chhhHHHHhcccccccccCCcccH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV------CTLRVRMPISSDLSN----------PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~------~~lR~~~v~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... .......+.... ....+.+.
T Consensus 145 --~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~p 218 (254)
T 3kzv_A 145 --SSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLK----ENNQLLDS 218 (254)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHH----TTC----C
T ss_pred --CCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHH----hcCCcCCc
Confidence 23478999999999988765422 556777766543211 011122221111 13456789
Q ss_pred hhHHHHHHHHHhcC----C-CCeEEecCCCc
Q 022112 203 DELLPISIEMAKRN----L-TGIWNFTNPGV 228 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~-~~~~~~~~~~~ 228 (302)
+|+|++++.++... . +..+++.+++.
T Consensus 219 ~dva~~v~~L~s~~~~~~itG~~i~vdg~~~ 249 (254)
T 3kzv_A 219 SVPATVYAKLALHGIPDGVNGQYLSYNDPAL 249 (254)
T ss_dssp HHHHHHHHHHHHHCCCGGGTTCEEETTCGGG
T ss_pred ccHHHHHHHHHhhcccCCCCccEEEecCccc
Confidence 99999999988654 2 34777776543
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=143.65 Aligned_cols=196 Identities=13% Similarity=0.140 Sum_probs=134.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc----CCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV----KPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~----~~d~Vi~~a~ 71 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|++||+||
T Consensus 9 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~nAg 88 (257)
T 3tl3_A 9 DAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVNCAG 88 (257)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECGG
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 458999999999999999999999999877 578999999988777643 8999999999
Q ss_pred cCCCCCc-----chhhhhHHHHHHHhHHHHHHHHHHHHHh-------------CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 72 VTGRPNV-----DWCESHKVETIRTNVVGTLTLADVCRDK-------------GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 72 ~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------------~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
....... .....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 157 (257)
T 3tl3_A 89 TGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ----------- 157 (257)
T ss_dssp GSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH-----------
T ss_pred CCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC-----------
Confidence 6510000 0234567889999999999999988753 2258999987654321
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhh
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ...+...+.... .....+.+.+|
T Consensus 158 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~---~~~~r~~~p~d 227 (257)
T 3tl3_A 158 -------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQV---PHPSRLGNPDE 227 (257)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHHHHHHHTS---SSSCSCBCHHH
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHHHHHHhcC---CCCCCccCHHH
Confidence 12368999999998887665322 556777765543211 112222221111 12255788999
Q ss_pred HHHHHHHHHhcC--CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN--LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~--~~~~~~~~~~~~~s 230 (302)
+|++++.+++.+ .+.++++.+|..++
T Consensus 228 va~~v~~l~s~~~itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 228 YGALAVHIIENPMLNGEVIRLDGAIRMA 255 (257)
T ss_dssp HHHHHHHHHHCTTCCSCEEEESTTC---
T ss_pred HHHHHHHHhcCCCCCCCEEEECCCccCC
Confidence 999999998763 34588988876554
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=139.72 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=137.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 6 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (280)
T 1xkq_A 6 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFG 85 (280)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999998876 346899998888777643
Q ss_pred CCCEEEEccccCCCCC-----cchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPN-----VDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|+|||+||...... .+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 155 (280)
T 1xkq_A 86 KIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA---------- 155 (280)
T ss_dssp CCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC----------
T ss_pred CCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC----------
Confidence 7999999999763111 12234567889999999999999988653 4579999997665421
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC---ch-------hhHHHHhccccccc
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN---PR-------NFITKITRYEKVVN 194 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~---~~-------~~~~~~~~~~~~~~ 194 (302)
.+....|+.+|...+.+.+.+.. ...++|+++..+.... .. .+...+... .
T Consensus 156 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 224 (280)
T 1xkq_A 156 -------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC----I 224 (280)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT----C
T ss_pred -------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC----C
Confidence 02336899999999998776531 2678888887652100 00 011111110 0
Q ss_pred ccCCcccHhhHHHHHHHHHhcC-----CCCeEEecCCCcc
Q 022112 195 IPNSMTILDELLPISIEMAKRN-----LTGIWNFTNPGVV 229 (302)
Q Consensus 195 ~~~~~i~v~D~a~~~~~~~~~~-----~~~~~~~~~~~~~ 229 (302)
....+.+.+|+|++++.++... .+..+++.++...
T Consensus 225 p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~~ 264 (280)
T 1xkq_A 225 PIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 264 (280)
T ss_dssp TTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred CCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCccc
Confidence 1235789999999999988542 2458888887543
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=149.63 Aligned_cols=206 Identities=11% Similarity=0.077 Sum_probs=144.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------------eecCCCChhhHHHHHhh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------------GSGRLENRASLEADIAA 60 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------------~~~dl~~~~~~~~~~~~ 60 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++
T Consensus 28 k~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 107 (322)
T 3qlj_A 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLIQT 107 (322)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 47999999999999999999999998875 35788898888877765
Q ss_pred c-----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCC
Q 022112 61 V-----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDS 123 (302)
Q Consensus 61 ~-----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~ 123 (302)
. ++|++||+||...... .+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 108 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~- 186 (322)
T 3qlj_A 108 AVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGS- 186 (322)
T ss_dssp HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHCB-
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHccCC-
Confidence 4 8999999999763111 12345577889999999999999987543 1379999997665422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccc
Q 022112 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNI 195 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
+....|+.+|...+.+.+.++.. ..++|+ +..+.. ..+..... .....
T Consensus 187 -----------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~---~~~~~~~~---~~~~~ 242 (322)
T 3qlj_A 187 -----------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMT---ETVFAEMM---ATQDQ 242 (322)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCS---CCSCCC----------
T ss_pred -----------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccc---hhhhhhhh---hcccc
Confidence 13368999999999988765432 344554 322111 00000000 00112
Q ss_pred cCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc-----------------CHHHHHHHHHhhcCCC
Q 022112 196 PNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV-----------------SHNEILEMYRQYIDPN 245 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~-----------------s~~e~~~~~~~~~g~~ 245 (302)
...+...+|+|.+++.++... .+..+++.+|... ++.|+++.+.+.+|.+
T Consensus 243 ~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~ 313 (322)
T 3qlj_A 243 DFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKA 313 (322)
T ss_dssp -CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhcc
Confidence 235678999999999988642 3458888887655 7799999999998854
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=140.57 Aligned_cols=193 Identities=8% Similarity=-0.058 Sum_probs=137.9
Q ss_pred cEEEEEcCCcc--hHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGW--IGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~--iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+ ||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|+
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~ 106 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGLDA 106 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSSCCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence 58999999977 999999999999999877 568999999988887654 7899
Q ss_pred EEEccccCCC-----CCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGR-----PNVD-WCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 66 Vi~~a~~~~~-----~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|||+||.... +..+ ....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 107 li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------- 173 (280)
T 3nrc_A 107 IVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAM------------- 173 (280)
T ss_dssp EEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCC-------------
T ss_pred EEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCC-------------
Confidence 9999997620 0001 344577789999999999999988753 4579999997655421
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.+... ..++|+.+..+..... ..+........ ....+...+|
T Consensus 174 -----~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~----p~~~~~~ped 244 (280)
T 3nrc_A 174 -----PSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVS----PLKKNVDIME 244 (280)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHS----TTCSCCCHHH
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcC----CCCCCCCHHH
Confidence 23478999999999988665322 5677777765422111 11222221111 1234678999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+|++++.++... .+.++++.+|..+
T Consensus 245 vA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 245 VGNTVAFLCSDMATGITGEVVHVDAGYHC 273 (280)
T ss_dssp HHHHHHHTTSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHhCcccCCcCCcEEEECCCccc
Confidence 999999988652 2458999887654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=138.39 Aligned_cols=192 Identities=6% Similarity=-0.001 Sum_probs=131.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhh----cCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAA----VKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~----~~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.+++++ .++
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~gi 86 (260)
T 2z1n_A 7 GKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGGA 86 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999998876 23689999888777763 249
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKGL-ILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+|||+||...... ......++...+++|+.++.++.+++. +.+. ++|++||...+...
T Consensus 87 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 151 (260)
T 2z1n_A 87 DILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW--------------- 151 (260)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC---------------
Confidence 99999999652111 122345778899999999977666654 4443 59999998766421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-----------chhh-HHHHhcccccccccC
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-----------PRNF-ITKITRYEKVVNIPN 197 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-----------~~~~-~~~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+.+.+.. ...++|++++.+.... .... ...+... ....
T Consensus 152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~ 224 (260)
T 2z1n_A 152 ---QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASR----IPMG 224 (260)
T ss_dssp ---TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC-----------------------C----CTTS
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhc----CCCC
Confidence 2336899999999988766432 2678999888764310 0000 1111110 0123
Q ss_pred CcccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 198 SMTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.+.+.+|+|++++.++... .+..+++.++.
T Consensus 225 r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 225 RVGKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp SCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred CccCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 4678999999999988652 23488887763
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=140.01 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=132.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~~ 75 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|+++++++++.. ++|+|||+||....
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~ 100 (253)
T 2nm0_A 21 SRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKD 100 (253)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEEECSCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 468999999999999999999999999877 467999999988777643 68999999997521
Q ss_pred CC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 76 PN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 76 ~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
.. .+....++...+++|+.++.++++++.+ .+ .++|++||...+.+ .+....|+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------------~~~~~~Y~as 162 (253)
T 2nm0_A 101 QLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLG------------------SAGQANYAAS 162 (253)
T ss_dssp TC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCC------------------HHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCC------------------CCCcHHHHHH
Confidence 11 1224457788999999999999887754 23 35999998654331 1123689999
Q ss_pred HHHHHHHHHhhcCc--------eEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----
Q 022112 150 KAMVEELLKNFENV--------CTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---- 216 (302)
Q Consensus 150 K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---- 216 (302)
|...+.+.+.+... ..++|+++..+.... ...+...+.... ....++..+|+|++++.++...
T Consensus 163 K~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~----p~~~~~~p~dvA~~i~~l~s~~~~~~ 238 (253)
T 2nm0_A 163 KAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQV----PLGRYARPEEIAATVRFLASDDASYI 238 (253)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CHHHHHTTC----TTCSCBCHHHHHHHHHHHHSGGGTTC
T ss_pred HHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhcC----CCCCCcCHHHHHHHHHHHhCccccCC
Confidence 99999887664321 567777665432110 011111111111 1234789999999999988653
Q ss_pred CCCeEEecCCCc
Q 022112 217 LTGIWNFTNPGV 228 (302)
Q Consensus 217 ~~~~~~~~~~~~ 228 (302)
.+..+.+.++..
T Consensus 239 tG~~i~vdGG~~ 250 (253)
T 2nm0_A 239 TGAVIPVDGGLG 250 (253)
T ss_dssp CSCEEEESTTTT
T ss_pred cCcEEEECCccc
Confidence 234788887654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=139.49 Aligned_cols=196 Identities=15% Similarity=0.081 Sum_probs=133.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.++++.. ++|+|
T Consensus 5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l 84 (253)
T 1hxh_A 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL 84 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3468999999999999999999999999876 457999999888777643 68999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHH----HHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVC----RDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
||+||..... .......++...+++|+.++..+.+++ ++.+.++|++||...+.+. +
T Consensus 85 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~ 146 (253)
T 1hxh_A 85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI------------------E 146 (253)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC------------------T
T ss_pred EECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcCCC------------------C
Confidence 9999976311 112244577889999998877666654 4445469999997765421 2
Q ss_pred CCCchhhhHHHHHHHHHhhc----------CceEEeeecccCCCCCC--chhhHHH-HhcccccccccCCcccHhhHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFE----------NVCTLRVRMPISSDLSN--PRNFITK-ITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~----------~~~~lR~~~v~g~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
....|+.+|...+.+.+.+. ....+||++++++.... +..+... +..... ......+.+.+|+|++
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~dvA~~ 225 (253)
T 1hxh_A 147 QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPK-LNRAGRAYMPERIAQL 225 (253)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTT-TBTTCCEECHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHHHhhhhc-cCccCCCCCHHHHHHH
Confidence 33689999999998876643 22678888887642100 0011111 111000 0012347789999999
Q ss_pred HHHHHhcC----CCCeEEecCCC
Q 022112 209 SIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~ 227 (302)
++.++... .+..+++.++.
T Consensus 226 ~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 226 VLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp HHHHHSGGGTTCCSCEEEESSSC
T ss_pred HHHHcCccccCCCCcEEEECCCc
Confidence 99988753 24478887764
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=142.38 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=124.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 112 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGV 112 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence 57999999999999999999999999876 357899999888777643 79
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHH----HHHHHHHHHHhC---CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVG----TLTLADVCRDKG---LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~----~~~ll~~~~~~~---~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|+|||+||...... ......++...+++|+.+ +..+++.+++.+ .++|++||...+...
T Consensus 113 D~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~------------- 179 (279)
T 1xg5_A 113 DICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------------- 179 (279)
T ss_dssp SEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------------
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-------------
Confidence 99999999753111 112445778899999999 677777777766 479999998765411
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhc------C----ceEEeeecccCCCCCCchhhHHHHhcccc----cccccCCccc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFE------N----VCTLRVRMPISSDLSNPRNFITKITRYEK----VVNIPNSMTI 201 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~------~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~----~~~~~~~~i~ 201 (302)
+.++...|+.+|...+.+++.+. . ...++|+++..+ +......... .......+++
T Consensus 180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~-------~~~~~~~~~~~~~~~~~~~~~~~~ 249 (279)
T 1xg5_A 180 ---PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQ-------FAFKLHDKDPEKAAATYEQMKCLK 249 (279)
T ss_dssp ---SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSS-------HHHHHTTTCHHHHHHHHC---CBC
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccch-------hhhhhcccChhHHhhhcccccCCC
Confidence 11233689999999988775532 1 155677776543 1111111100 0011234788
Q ss_pred HhhHHHHHHHHHhcC
Q 022112 202 LDELLPISIEMAKRN 216 (302)
Q Consensus 202 v~D~a~~~~~~~~~~ 216 (302)
.+|+|++++.++..+
T Consensus 250 ~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 250 PEDVAEAVIYVLSTP 264 (279)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999864
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=137.85 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=122.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc--CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV--KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~--~~d~Vi~~a 70 (302)
|+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.+++++. ..|+|||+|
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A 80 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA 80 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence 457999999999999999999999999887 568999999999998854 349999999
Q ss_pred ccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 71 GVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
|....+.. .....++...+++|+.++.++++++... +.++|++||...+... +....
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------------~~~~~ 142 (230)
T 3guy_A 81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK------------------AQEST 142 (230)
T ss_dssp CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC------------------TTCHH
T ss_pred CcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC------------------CCCch
Confidence 97631111 2244577889999999999999988653 3379999987665421 23478
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
|+.+|...+.+.+.+... ..++|+.+..+ +....... .....+.+.+|+|++++.++..+.
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~-------~~~~~~~~----~~~~~~~~~~dvA~~i~~l~~~~~ 211 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATE-------FWETSGKS----LDTSSFMSAEDAALMIHGALANIG 211 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC---------------------------CCCHHHHHHHHHHHCCEET
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccCh-------HHHhcCCC----CCcccCCCHHHHHHHHHHHHhCcC
Confidence 999999999988765432 33444444322 21111111 113457789999999999987644
Q ss_pred C
Q 022112 218 T 218 (302)
Q Consensus 218 ~ 218 (302)
.
T Consensus 212 ~ 212 (230)
T 3guy_A 212 N 212 (230)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=137.85 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=123.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv 82 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL 82 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 468999999999999999999999999887 568999999988877654 799999
Q ss_pred EccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 68 ~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+||.... +..+....++...+++|+.++.++++++... +.++|++||...+.+. +.
T Consensus 83 nnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------------~~ 144 (235)
T 3l6e_A 83 HCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------------AN 144 (235)
T ss_dssp EECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------------SS
T ss_pred ECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------------CC
Confidence 99997521 1112345678899999999999998888542 3378999987644311 23
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
...|+.+|...+.+.+.+... ..++|+.+..+. ...... .....+...+|+|++++.++.
T Consensus 145 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~-------~~~~~~-----~~~~~~~~pedvA~~v~~l~~ 212 (235)
T 3l6e_A 145 ESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEF-------WDNTDH-----VDPSGFMTPEDAAAYMLDALE 212 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------------------CBCHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcc-------hhccCC-----CCCcCCCCHHHHHHHHHHHHh
Confidence 368999999999988765422 445555553321 111100 012246789999999999998
Q ss_pred cCC
Q 022112 215 RNL 217 (302)
Q Consensus 215 ~~~ 217 (302)
++.
T Consensus 213 ~~~ 215 (235)
T 3l6e_A 213 ARS 215 (235)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-17 Score=141.15 Aligned_cols=185 Identities=16% Similarity=0.039 Sum_probs=123.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.+++.++++.. +
T Consensus 8 ~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (319)
T 3ioy_A 8 GRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGP 87 (319)
T ss_dssp TCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 358999999999999999999999999877 467999999988877654 7
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDSGHPLGSG 130 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~~~~~~~~ 130 (302)
+|+|||+||..... .......++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 88 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~-------- 159 (319)
T 3ioy_A 88 VSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA-------- 159 (319)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC--------
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC--------
Confidence 89999999975311 112244577889999999999999887643 3459999997765422
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHh----hcCc----eEEeeecccCCCCCCchhhHHHHhcccc----------c
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKN----FENV----CTLRVRMPISSDLSNPRNFITKITRYEK----------V 192 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~----~~~~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~----------~ 192 (302)
+....|+.+|...+.+.+. +... ..++|+++..+-... .......+.+.. .
T Consensus 160 ----------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 228 (319)
T 3ioy_A 160 ----------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYAS-DDIRPDALKGEVKPVDKTAVERL 228 (319)
T ss_dssp ----------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC------------------------------
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccc-cccCchhhcccccchhHHHHHHH
Confidence 2336899999966655544 3222 667777776542211 011111110000 0
Q ss_pred ccccCCcccHhhHHHHHHHHHhcCC
Q 022112 193 VNIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 193 ~~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
.......++.+|+|++++.+++++.
T Consensus 229 ~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 229 AGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 0011123789999999999999754
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-17 Score=137.20 Aligned_cols=197 Identities=12% Similarity=0.031 Sum_probs=137.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------------------------eecCCCChhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------------------------GSGRLENRAS 53 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------------------------~~~dl~~~~~ 53 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.++
T Consensus 11 ~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 90 (286)
T 3uve_A 11 GKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDA 90 (286)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHHH
Confidence 468999999999999999999999998875 3578999998
Q ss_pred HHHHHhhc-----CCCEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCcccc
Q 022112 54 LEADIAAV-----KPTHVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFE 120 (302)
Q Consensus 54 ~~~~~~~~-----~~d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~ 120 (302)
+.+++++. ++|++||+||...... ......++...+++|+.++.++++++... +.++|++||...+.
T Consensus 91 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (286)
T 3uve_A 91 LKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLK 170 (286)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhcc
Confidence 88777643 7999999999763211 12245677889999999999999987543 34699999976554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc---
Q 022112 121 YDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY--- 189 (302)
Q Consensus 121 ~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~--- 189 (302)
.. +....|+.+|...+.+.+.++.. ..++|+++..+..... .....+...
T Consensus 171 ~~------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~ 231 (286)
T 3uve_A 171 AY------------------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNE-GTFKMFRPDLEN 231 (286)
T ss_dssp CC------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSH-HHHHHHCTTSSS
T ss_pred CC------------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCccccc-chhhhccccccc
Confidence 21 23368999999999988765322 5567777765432111 111111000
Q ss_pred c----------ccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 190 E----------KVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 190 ~----------~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
. .....+..+.+.+|+|++++.++... .+.++++.+|..+
T Consensus 232 ~~~~~~~~~~~~~~~~p~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~l 285 (286)
T 3uve_A 232 PGPDDMAPICQMFHTLPIPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSCL 285 (286)
T ss_dssp CCHHHHHHHHHTTCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cchhhHHHHHHhhhccCCCcCCHHHHHHHHHHHcCccccCCcCCEEeECCcccc
Confidence 0 00012256789999999999988642 2458999887654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=141.49 Aligned_cols=195 Identities=15% Similarity=0.078 Sum_probs=134.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc----CCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV----KPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~----~~d~Vi~~ 69 (302)
+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.++++.. ++|++||+
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv~~ 110 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVA 110 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEEEc
Confidence 47999999999999999999999999877 678999999988877653 68999999
Q ss_pred -cccCCCCCc------chhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCCCCCCCCCC
Q 022112 70 -AGVTGRPNV------DWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 70 -a~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
|+....... .....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 111 aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 181 (281)
T 3ppi_A 111 HGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ--------- 181 (281)
T ss_dssp CCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC---------
T ss_pred cCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC---------
Confidence 443311111 2334567899999999999999988632 2369999997665421
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.+... ..++|+++..+... ....+...+.... .....+.+.
T Consensus 182 ---------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~---~~~~~~~~p 249 (281)
T 3ppi_A 182 ---------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEALAKFAANI---PFPKRLGTP 249 (281)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHHTC---CSSSSCBCH
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHHHHHHhcC---CCCCCCCCH
Confidence 23478999999998887665332 44555555332100 0111222222211 122567899
Q ss_pred hhHHHHHHHHHhcC--CCCeEEecCCCccC
Q 022112 203 DELLPISIEMAKRN--LTGIWNFTNPGVVS 230 (302)
Q Consensus 203 ~D~a~~~~~~~~~~--~~~~~~~~~~~~~s 230 (302)
+|+|++++.+++.. .+.++++.+|..++
T Consensus 250 edvA~~v~~l~s~~~~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 250 DEFADAAAFLLTNGYINGEVMRLDGAQRFT 279 (281)
T ss_dssp HHHHHHHHHHHHCSSCCSCEEEESTTCCCC
T ss_pred HHHHHHHHHHHcCCCcCCcEEEECCCcccC
Confidence 99999999999764 34588998876654
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-17 Score=137.78 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=132.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCC--CChhhHHHHHhhc----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRL--ENRASLEADIAAV---- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl--~~~~~~~~~~~~~---- 61 (302)
+++++|||||+|+||+++++.|+++|++|++ +.+|+ ++.+++.++++..
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNY 90 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence 3568999999999999999999999999887 45778 8888877776643
Q ss_pred -CCCEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 -~~d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+||... .+.......++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----------- 159 (252)
T 3f1l_A 91 PRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR----------- 159 (252)
T ss_dssp SCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC-----------
Confidence 7999999999742 1122234557788999999999999998843 33 469999997654321
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+.+.++.. . +|+..+.... ....+........ ....+...+|+|.+++
T Consensus 160 -------~~~~~Y~asK~a~~~l~~~la~e~~~~-irvn~v~PG~--v~t~~~~~~~~~~----~~~~~~~p~dva~~~~ 225 (252)
T 3f1l_A 160 -------ANWGAYAASKFATEGMMQVLADEYQQR-LRVNCINPGG--TRTAMRASAFPTE----DPQKLKTPADIMPLYL 225 (252)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEECCS--BSSHHHHHHCTTC----CGGGSBCTGGGHHHHH
T ss_pred -------CCCchhHHHHHHHHHHHHHHHHHhcCC-cEEEEEecCc--ccCchhhhhCCcc----chhccCCHHHHHHHHH
Confidence 23378999999999987665322 2 5554443221 1122333322211 1223567899999999
Q ss_pred HHHhcC----CCCeEEecCCCccCHH
Q 022112 211 EMAKRN----LTGIWNFTNPGVVSHN 232 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~~~~s~~ 232 (302)
.++... .+..+++.+|...++.
T Consensus 226 ~L~s~~~~~itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 226 WLMGDDSRRKTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp HHHSGGGTTCCSCEEESSCC------
T ss_pred HHcCccccCCCCCEEEeCCCcCCCCC
Confidence 988653 2458999988776654
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-17 Score=141.36 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=137.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------------eecCCCChhhHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENRASLEAD 57 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~~~ 57 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++
T Consensus 46 gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 125 (317)
T 3oec_A 46 GKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQAV 125 (317)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 358999999999999999999999998875 35789999988887
Q ss_pred Hhhc-----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCC
Q 022112 58 IAAV-----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGH 125 (302)
Q Consensus 58 ~~~~-----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~ 125 (302)
+++. ++|++||+||...... .+....++...+++|+.++.++++++.. . +.++|++||...+...
T Consensus 126 ~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~--- 202 (317)
T 3oec_A 126 VDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGA--- 202 (317)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCC---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCC---
Confidence 7654 8999999999763111 1234567788999999999999988854 2 2359999997655421
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc---c----
Q 022112 126 PLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY---E---- 190 (302)
Q Consensus 126 ~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~---~---- 190 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. ....+...+... .
T Consensus 203 ---------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~-~~~~~~~~~~~~~~~~~~~~ 266 (317)
T 3oec_A 203 ---------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMA-LNEKLLKMFLPHLENPTRED 266 (317)
T ss_dssp ---------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHH-HCHHHHHHHCTTCSSCCHHH
T ss_pred ---------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccc-cchhhhhhhhhhccccchhH
Confidence 23368999999999988765432 5567777655311 000111111110 0
Q ss_pred ------ccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 191 ------KVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 191 ------~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
.....+..+.+.+|+|++++.++... .+.++++.+|...
T Consensus 267 ~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~~ 315 (317)
T 3oec_A 267 AAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQLA 315 (317)
T ss_dssp HHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchhh
Confidence 00112367889999999999988642 2458999887543
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=135.74 Aligned_cols=174 Identities=17% Similarity=0.074 Sum_probs=125.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
|+++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV 81 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 568999999999999999999999999876 468999999988887654 89
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++||+||...... .+....++...+++|+.++.++++++.. .+.++|++||+..+..
T Consensus 82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~----------------- 144 (235)
T 3l77_A 82 DVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARL----------------- 144 (235)
T ss_dssp SEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSC-----------------
T ss_pred CEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhccc-----------------
Confidence 99999999763111 1124567888999999999999998854 3556777777654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhc--C----ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFE--N----VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~--~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
.+....|+.+|...+.+.+.+. . ...++|+++..+.... . ........++..+|+|++++.+
T Consensus 145 -~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~-------~----~~~~~~~~~~~p~dva~~v~~l 212 (235)
T 3l77_A 145 -IPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGS-------K----PGKPKEKGYLKPDEIAEAVRCL 212 (235)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTC-------C----SCCCGGGTCBCHHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccc-------c----CCcccccCCCCHHHHHHHHHHH
Confidence 1223689999999999987752 1 1556776664431100 0 0011122567899999999999
Q ss_pred HhcC
Q 022112 213 AKRN 216 (302)
Q Consensus 213 ~~~~ 216 (302)
++.+
T Consensus 213 ~~~~ 216 (235)
T 3l77_A 213 LKLP 216 (235)
T ss_dssp HTSC
T ss_pred HcCC
Confidence 9875
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-17 Score=138.63 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=137.0
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+ |+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 85 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGSL 85 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSCE
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999 99999999999999999887 346888988888777644 78
Q ss_pred CEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 64 d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
|++||+||.... +.......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------- 152 (275)
T 2pd4_A 86 DFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------------- 152 (275)
T ss_dssp EEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------------
T ss_pred CEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC-------------
Confidence 999999997621 1113345577889999999999999999875 4479999986554311
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHhh
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.+... ..++|+++..+..... ..+...+....+ ...+.+.+|
T Consensus 153 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p----~~~~~~p~d 223 (275)
T 2pd4_A 153 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAP----LRKNVSLEE 223 (275)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST----TSSCCCHHH
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCC----cCCCCCHHH
Confidence 23368999999999987664321 6788888876532110 112222221111 123568999
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+|++++.++... .+..+++.++..
T Consensus 224 va~~~~~l~s~~~~~~tG~~~~vdgg~~ 251 (275)
T 2pd4_A 224 VGNAGMYLLSSLSSGVSGEVHFVDAGYH 251 (275)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 999999988642 234788887643
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=138.64 Aligned_cols=193 Identities=15% Similarity=0.094 Sum_probs=133.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++|
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv 85 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDILV 85 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence 468999999999999999999999999877 568999999988877654 799999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHH----HHhC--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVC----RDKG--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+||...... .+....++...+++|+.++.++++++ ++.+ .++|++||...+.+.
T Consensus 86 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 147 (247)
T 3rwb_A 86 NNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT------------------ 147 (247)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC------------------
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC------------------
Confidence 9999763111 12244577889999999999998884 4444 369999997765422
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+... .+......+... ......+...+|+|+++..
T Consensus 148 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~---~~~~~r~~~pedva~~v~~ 224 (247)
T 3rwb_A 148 PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEM---LQAMKGKGQPEHIADVVSF 224 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHH---HSSSCSCBCHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhc---ccccCCCcCHHHHHHHHHH
Confidence 23478999999999887765432 44556555432100 000000111000 0112345689999999999
Q ss_pred HHhcC----CCCeEEecCCC
Q 022112 212 MAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~ 227 (302)
++... .+.++++.+|.
T Consensus 225 L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 225 LASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp HHSGGGTTCCSCEEEESTTS
T ss_pred HhCccccCCCCCEEEECCCc
Confidence 88653 24588888764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=138.23 Aligned_cols=190 Identities=12% Similarity=0.096 Sum_probs=131.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 28 k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD 107 (267)
T 3u5t_A 28 KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVD 107 (267)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 47999999999999999999999999876 468999999988877654 799
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
++||+||....... .....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 108 ~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------ 169 (267)
T 3u5t_A 108 VLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH------------------ 169 (267)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC------------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC------------------
Confidence 99999997631111 2234467788899999999999988764 3368999987665422
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC--chhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN--PRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+.+.++.. ..+.|+.+..+.... ...+...+.... ....+...+|+|++++
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~----p~~r~~~pedvA~~v~ 245 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLA----PLERLGTPQDIAGAVA 245 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHHHTSS----TTCSCBCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcC----CCCCCcCHHHHHHHHH
Confidence 23368999999999998765432 445666554431100 011112221111 1235678999999999
Q ss_pred HHHhcC----CCCeEEecCC
Q 022112 211 EMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~ 226 (302)
.++... .+..+++.+|
T Consensus 246 ~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 246 FLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp HHHSTTTTTCCSEEEEESSS
T ss_pred HHhCccccCccCCEEEeCCC
Confidence 988653 2347777765
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=139.21 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=125.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++. ++|+
T Consensus 32 k~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 111 (301)
T 3tjr_A 32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDV 111 (301)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCE
Confidence 47999999999999999999999999877 568999999988877654 8999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 112 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 175 (301)
T 3tjr_A 112 VFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN---------------- 175 (301)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC----------------
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC----------------
Confidence 999999763111 1234557788999999999999998744 23 469999987654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc---------cc-----cccccCCccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY---------EK-----VVNIPNSMTI 201 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~---------~~-----~~~~~~~~i~ 201 (302)
+....|+.+|...+.+.+.+... ..+|+..+..+... ..+....... .+ .......+++
T Consensus 176 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~--T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (301)
T 3tjr_A 176 --AGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVE--TKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVS 251 (301)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCC--SSHHHHHHHHC----------------------CCC
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccc--cccccccccccchhhccccChhhhccccccccCCCC
Confidence 23478999999999887765432 23444444332111 1122211100 00 0112346789
Q ss_pred HhhHHHHHHHHHhcCC
Q 022112 202 LDELLPISIEMAKRNL 217 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~ 217 (302)
++|+|++++.+++++.
T Consensus 252 pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 252 ADDVARLTADAILANR 267 (301)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998753
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-17 Score=139.50 Aligned_cols=195 Identities=11% Similarity=0.006 Sum_probs=134.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 108 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKL 108 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 368999999999999999999999999876 347888888887776543 79
Q ss_pred CEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|+|||+||...... .+....++...+++|+.++.++++++.+. +.++|++||...+...
T Consensus 109 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------------- 171 (283)
T 1g0o_A 109 DIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKA----------------- 171 (283)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSS-----------------
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCC-----------------
Confidence 99999999763111 11235677889999999999999999875 3479999997644311
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC------------chhhHHHHhcccccccccCCc
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN------------PRNFITKITRYEKVVNIPNSM 199 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 199 (302)
.+....|+.+|...+.+.+.++. ...++|+++..+.... .......+.... ......+
T Consensus 172 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~r~ 249 (283)
T 1g0o_A 172 VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ--WSPLRRV 249 (283)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH--SCTTCSC
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhc--CCCCCCC
Confidence 01236899999999998876532 1667888776531000 001111111100 0012346
Q ss_pred ccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 200 TILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.+.+|+|++++.++... .+.++++.+|.
T Consensus 250 ~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 250 GLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 78999999999998753 23478887764
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=137.83 Aligned_cols=184 Identities=8% Similarity=0.004 Sum_probs=122.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~----~~d~ 65 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 7 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~ 86 (252)
T 3h7a_A 7 NATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEV 86 (252)
T ss_dssp SCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceE
Confidence 468999999999999999999999999877 578999999988887754 7899
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 87 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------------- 149 (252)
T 3h7a_A 87 TIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG----------------- 149 (252)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC-----------------
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC-----------------
Confidence 999999763111 1234567788999999999998887743 33 469999987654321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccc---ccccccCCcccHhhHHHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYE---KVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+....|+.+|...+.+.+.++.. ..+|+.+.+.|+. ....+........ .....+..+...+|+|++++.++
T Consensus 150 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~-v~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~~~~l~ 227 (252)
T 3h7a_A 150 -SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSG-VDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLY 227 (252)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC----------------------------CCHHHHHHHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCc-cCChhhhccchhhhhhhhhcCCccCCCHHHHHHHHHHHH
Confidence 23478999999999988765432 3455522222221 1111111111100 00011122889999999999999
Q ss_pred hcC
Q 022112 214 KRN 216 (302)
Q Consensus 214 ~~~ 216 (302)
..+
T Consensus 228 s~~ 230 (252)
T 3h7a_A 228 QQP 230 (252)
T ss_dssp HCC
T ss_pred hCc
Confidence 864
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=137.66 Aligned_cols=192 Identities=13% Similarity=0.053 Sum_probs=135.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-------
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV------- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~------- 61 (302)
++++|||||+|+||++++++|+++|++|++ +.+|+++.++++..++..
T Consensus 7 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 86 (255)
T 3icc_A 7 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNR 86 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999999876 457899988877766542
Q ss_pred ----CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+||....... .....+....+++|+.++.++++++... +.++|++||...+.+.
T Consensus 87 ~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----------- 155 (255)
T 3icc_A 87 TGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL----------- 155 (255)
T ss_dssp HSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC-----------
T ss_pred ccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC-----------
Confidence 39999999997631111 1234566788999999999999999764 3469999997655421
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+....|+.+|...+.+.+.+... ..++|+++..+.... ...+....... .....+.+.
T Consensus 156 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 224 (255)
T 3icc_A 156 -------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTI----SAFNRLGEV 224 (255)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHT----STTSSCBCH
T ss_pred -------CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhcc----CCcCCCCCH
Confidence 23378999999999987665322 567777776543211 11111111111 123456789
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+|+|++++.++... .+.++++.+|.
T Consensus 225 ~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 225 EDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred HHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 99999999988642 34588888874
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-16 Score=135.97 Aligned_cols=197 Identities=10% Similarity=-0.012 Sum_probs=137.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------------eecCCCChhhHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENRASLEAD 57 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~~~~ 57 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++
T Consensus 28 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 107 (299)
T 3t7c_A 28 GKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAA 107 (299)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 358999999999999999999999998874 45789999988877
Q ss_pred Hhhc-----CCCEEEEccccCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh------CCeEEEEcCCccccCCCC
Q 022112 58 IAAV-----KPTHVFNAAGVTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK------GLILINYATGCIFEYDSG 124 (302)
Q Consensus 58 ~~~~-----~~d~Vi~~a~~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~vy~~~~~ 124 (302)
+++. ++|++||+||...... .+....++...+++|+.++.++++++... +.++|++||...+...
T Consensus 108 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~-- 185 (299)
T 3t7c_A 108 VDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGA-- 185 (299)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC--
Confidence 7643 7999999999763111 12245678899999999999999987543 2469999997655421
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcc---c---
Q 022112 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRY---E--- 190 (302)
Q Consensus 125 ~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~---~--- 190 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+..... .....+... .
T Consensus 186 ----------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~ 248 (299)
T 3t7c_A 186 ----------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNE-PTYRMFRPDLENPTVE 248 (299)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH-HHHHHHCTTSSSCCHH
T ss_pred ----------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCcccccc-chhhhhhhhhccchhh
Confidence 23478999999999887665322 5567777765432111 000011000 0
Q ss_pred -------ccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 191 -------KVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 191 -------~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
.....+..+...+|+|++++.++... .+.++++.+|..+
T Consensus 249 ~~~~~~~~~~~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~l 298 (299)
T 3t7c_A 249 DFQVASRQMHVLPIPYVEPADISNAILFLVSDDARYITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHHHSSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHhhhhcccCcCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCccc
Confidence 00011255788999999999998653 2458999887654
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.6e-18 Score=139.24 Aligned_cols=191 Identities=12% Similarity=-0.000 Sum_probs=131.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhh-------cCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAA-------VKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~-------~~~d~Vi~~a~ 71 (302)
+++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++ .++|+|||+||
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~Ag 85 (241)
T 1dhr_A 6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAG 85 (241)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEccc
Confidence 3468999999999999999999999999887 35788888888777664 27999999999
Q ss_pred cCCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 72 VTGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 72 ~~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
...... ......++...+++|+.++.++++++.+. +.++|++||...+... +....|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y 147 (241)
T 1dhr_A 86 GWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT------------------PGMIGY 147 (241)
T ss_dssp CCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------------TTBHHH
T ss_pred ccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC------------------CCchHH
Confidence 752111 22344577889999999999999999764 3469999997765421 233689
Q ss_pred hhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----C
Q 022112 147 SKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN----L 217 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~ 217 (302)
+.+|...+.+.+.+... ..+|+..+..+. ....+........ ....++..+|+|++++.++... .
T Consensus 148 ~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~--v~T~~~~~~~~~~----~~~~~~~~~~vA~~v~~l~~~~~~~~~ 221 (241)
T 1dhr_A 148 GMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVT--LDTPMNRKSMPEA----DFSSWTPLEFLVETFHDWITGNKRPNS 221 (241)
T ss_dssp HHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESC--EECHHHHHHSTTS----CGGGSEEHHHHHHHHHHHHTTTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCc--ccCccccccCcch----hhccCCCHHHHHHHHHHHhcCCCcCcc
Confidence 99999999998776432 124433332211 1112222221111 1123567899999999988653 2
Q ss_pred CCeEEecCCC
Q 022112 218 TGIWNFTNPG 227 (302)
Q Consensus 218 ~~~~~~~~~~ 227 (302)
++.+++.++.
T Consensus 222 G~~~~v~g~~ 231 (241)
T 1dhr_A 222 GSLIQVVTTD 231 (241)
T ss_dssp TCEEEEEEET
T ss_pred ceEEEEeCCC
Confidence 3467776543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=138.60 Aligned_cols=173 Identities=13% Similarity=0.055 Sum_probs=122.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+++|||||+|+||++++++|+++|++|++ +.+|+++.+++.++++.. ++|+
T Consensus 30 k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~ 109 (262)
T 3rkr_A 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDV 109 (262)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence 58999999999999999999999999877 568999999988877653 7999
Q ss_pred EEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 66 Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|||+||... .+.......++...+++|+.++.++++++.. . ..++|++||...+...
T Consensus 110 lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 173 (262)
T 3rkr_A 110 LVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPV---------------- 173 (262)
T ss_dssp EEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCC----------------
T ss_pred EEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCC----------------
Confidence 999999731 1112234557788999999999999998754 2 3469999997654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+++.+... ..++|+.+..+ +....... .....++..+|+|++++
T Consensus 174 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-------~~~~~~~~----~~~~~~~~p~dvA~~v~ 240 (262)
T 3rkr_A 174 --ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTE-------FGVGLSAK----KSALGAIEPDDIADVVA 240 (262)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------CCCHHHHHHHHH
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCC-------cccccccc----cccccCCCHHHHHHHHH
Confidence 23478999999999987665422 55666665432 11111110 11234678999999999
Q ss_pred HHHhcC
Q 022112 211 EMAKRN 216 (302)
Q Consensus 211 ~~~~~~ 216 (302)
.++...
T Consensus 241 ~l~s~~ 246 (262)
T 3rkr_A 241 LLATQA 246 (262)
T ss_dssp HHHTCC
T ss_pred HHhcCc
Confidence 998764
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=138.51 Aligned_cols=176 Identities=14% Similarity=0.016 Sum_probs=126.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD 110 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVS 110 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCS
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCCc
Confidence 468999999999999999999999999876 457999999888777643 799
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+||..... .......++...+++|+.++.++++++.. .+. ++|++||...+...
T Consensus 111 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------------- 174 (272)
T 1yb1_A 111 ILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------------- 174 (272)
T ss_dssp EEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH----------------
T ss_pred EEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC----------------
Confidence 999999976311 11233456778999999998887777643 343 59999997765421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC-----------ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN-----------VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~-----------~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+++.+.. ...+||+++..+.... . ......+++.+|+|+
T Consensus 175 --~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~-----------~--~~~~~~~~~~~dva~ 239 (272)
T 1yb1_A 175 --PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN-----------P--STSLGPTLEPEEVVN 239 (272)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC-----------T--HHHHCCCCCHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc-----------c--cccccCCCCHHHHHH
Confidence 1236899999999988765422 1567777766542110 0 001245788999999
Q ss_pred HHHHHHhcCCCCe
Q 022112 208 ISIEMAKRNLTGI 220 (302)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (302)
+++.++.++...+
T Consensus 240 ~i~~~~~~~~~~~ 252 (272)
T 1yb1_A 240 RLMHGILTEQKMI 252 (272)
T ss_dssp HHHHHHHTTCSEE
T ss_pred HHHHHHHcCCCEE
Confidence 9999998765543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=138.22 Aligned_cols=185 Identities=14% Similarity=0.060 Sum_probs=129.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhh-------cCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAA-------VKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~-------~~~d~Vi~~a~~ 72 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++ .++|+|||+||.
T Consensus 3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 82 (236)
T 1ooe_A 3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGG 82 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCcc
Confidence 468999999999999999999999999877 35788888887776653 279999999996
Q ss_pred CCCCC--cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 73 TGRPN--VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 73 ~~~~~--~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
..... ......++...+++|+.++.++++++.+. +.++|++||...+... +....|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~Y~ 144 (236)
T 1ooe_A 83 WAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT------------------PSMIGYG 144 (236)
T ss_dssp CCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------------TTBHHHH
T ss_pred cCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC------------------CCcHHHH
Confidence 52111 12345677889999999999999998764 2368999997665421 2346899
Q ss_pred hhHHHHHHHHHhhcCc----------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc--
Q 022112 148 KTKAMVEELLKNFENV----------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR-- 215 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~----------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~-- 215 (302)
.+|...+.+.+.+... ..++|+++..+ +........ ....++..+|+|++++.++..
T Consensus 145 ~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~-------~~~~~~~~~----~~~~~~~~~dvA~~i~~~l~s~~ 213 (236)
T 1ooe_A 145 MAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP-------MNRKWMPNA----DHSSWTPLSFISEHLLKWTTETS 213 (236)
T ss_dssp HHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH-------HHHHHSTTC----CGGGCBCHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCc-------chhhcCCCc----cccccCCHHHHHHHHHHHHcCCC
Confidence 9999999988765322 45666665442 222221111 122356789999999866632
Q ss_pred --C-CCCeEEecCCC
Q 022112 216 --N-LTGIWNFTNPG 227 (302)
Q Consensus 216 --~-~~~~~~~~~~~ 227 (302)
. .+..+++.++.
T Consensus 214 ~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 214 SRPSSGALLKITTEN 228 (236)
T ss_dssp GCCCTTCEEEEEEET
T ss_pred cccccccEEEEecCC
Confidence 1 24467776543
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=137.93 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=125.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 112 (281)
T 4dry_A 33 GRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARL 112 (281)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 458999999999999999999999999876 568999999988877654 89
Q ss_pred CEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-------CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK-------GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 64 d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-------~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
|++||+||.... +..+....++...+++|+.++.++.+++... +.++|++||...+..
T Consensus 113 D~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------------- 179 (281)
T 4dry_A 113 DLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP------------- 179 (281)
T ss_dssp SEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC-------------
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC-------------
Confidence 999999997521 1112345677889999999988888777542 246999999765431
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhccccc---ccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKV---VNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~ 203 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+ +...+...... ......+...+
T Consensus 180 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~-------~~~~~~~~~~~~~~~~~~~~~~~pe 247 (281)
T 4dry_A 180 -----RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATD-------MTARMSTGVLQANGEVAAEPTIPIE 247 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC--------------CEEECTTSCEEECCCBCHH
T ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcCh-------hhhhhcchhhhhhhcccccCCCCHH
Confidence 123478999999999988765422 44555555432 22222111110 01123467899
Q ss_pred hHHHHHHHHHhcCCC
Q 022112 204 ELLPISIEMAKRNLT 218 (302)
Q Consensus 204 D~a~~~~~~~~~~~~ 218 (302)
|+|++++.++..+..
T Consensus 248 dvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 248 HIAEAVVYMASLPLS 262 (281)
T ss_dssp HHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhCCCcc
Confidence 999999999987644
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-17 Score=135.75 Aligned_cols=184 Identities=16% Similarity=0.087 Sum_probs=123.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 83 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRID 83 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999877 468999999988877654 899
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+||...... .+....++...+++|+.++.++++++.. .+ .++|++||...+...
T Consensus 84 ~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~---------------- 147 (264)
T 3tfo_A 84 VLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV---------------- 147 (264)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC----------------
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC----------------
Confidence 9999999763111 1224457788999999999988887743 23 469999997655421
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc-eEEeeecccCCCCCCchhhHHHHhcccc--cc-cccCCcccHhhHHHHHHHHHh
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV-CTLRVRMPISSDLSNPRNFITKITRYEK--VV-NIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~-~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~v~D~a~~~~~~~~ 214 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..+.. ...+...+..... .. .....+...+|+|++++.+++
T Consensus 148 --~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~v~~l~s 223 (264)
T 3tfo_A 148 --PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVV--ESELAGTITHEETMAAMDTYRAIALQPADIARAVRQVIE 223 (264)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC-------------------------CCCHHHHHHHHHHHHH
T ss_pred --CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCC--cCcccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhc
Confidence 23368999999999988765322 2444444332211 0111111111100 00 112225689999999999998
Q ss_pred cCC
Q 022112 215 RNL 217 (302)
Q Consensus 215 ~~~ 217 (302)
.+.
T Consensus 224 ~~~ 226 (264)
T 3tfo_A 224 APQ 226 (264)
T ss_dssp SCT
T ss_pred CCc
Confidence 754
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=133.78 Aligned_cols=182 Identities=18% Similarity=0.134 Sum_probs=124.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~ 68 (302)
|++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|++||
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn 80 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN 80 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 47999999999999999999999999876 468999999999888754 7899999
Q ss_pred ccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 69 ~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
+||... .+.......++...+++|+.++.++++++.. . ..++|++||...+.+ .+
T Consensus 81 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------------------~~ 142 (248)
T 3asu_A 81 NAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWP------------------YA 142 (248)
T ss_dssp CCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------------CT
T ss_pred CCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccC------------------CC
Confidence 999651 1112234567788999999999998888753 3 347999999765431 12
Q ss_pred CCCchhhhHHHHHHHHHhhcC----c----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN----V----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~----~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+.+.++. . ..++|+++.|.+... ..+........... ....++..+|+|++++.++
T Consensus 143 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~-~~~~~~~~~~~~~~-~~~~~~~p~dvA~~v~~l~ 220 (248)
T 3asu_A 143 GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSN-VRFKGDDGKAEKTY-QNTVALTPEDVSEAVWWVS 220 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------CCBCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchh-hcccCchHHHHHHH-hccCCCCHHHHHHHHHHHh
Confidence 347899999999998766432 1 667888877422110 00000000000000 1123468999999999988
Q ss_pred hcC
Q 022112 214 KRN 216 (302)
Q Consensus 214 ~~~ 216 (302)
..+
T Consensus 221 s~~ 223 (248)
T 3asu_A 221 TLP 223 (248)
T ss_dssp HSC
T ss_pred cCC
Confidence 753
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-17 Score=137.54 Aligned_cols=185 Identities=10% Similarity=-0.006 Sum_probs=126.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++
T Consensus 28 ~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i 107 (286)
T 1xu9_A 28 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGL 107 (286)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 468999999999999999999999998876 357899998888777643 79
Q ss_pred CEEEEc-cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNA-AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~-a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|+|||+ |+....+.......+....+++|+.++.++++++.. .+.++|++||...+.+.
T Consensus 108 D~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~---------------- 171 (286)
T 1xu9_A 108 DMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAY---------------- 171 (286)
T ss_dssp SEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCC----------------
T ss_pred CEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCC----------------
Confidence 999999 565421112234556788999999999999888754 34579999997654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+....|+.+|...+.+++.+... ..+|+..+..+.. ...+......+. ....+++.+|+|+.++.++
T Consensus 172 --~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v--~t~~~~~~~~~~----~~~~~~~~~~vA~~i~~~~ 243 (286)
T 1xu9_A 172 --PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLI--DTETAMKAVSGI----VHMQAAPKEECALEIIKGG 243 (286)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCB--CCHHHHHHSCGG----GGGGCBCHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCcc--CChhHHHhcccc----ccCCCCCHHHHHHHHHHHH
Confidence 23478999999999887664321 2344433332111 111222211111 1234678999999999999
Q ss_pred hcCCCCeEE
Q 022112 214 KRNLTGIWN 222 (302)
Q Consensus 214 ~~~~~~~~~ 222 (302)
+.+..++|.
T Consensus 244 ~~~~~~~~~ 252 (286)
T 1xu9_A 244 ALRQEEVYY 252 (286)
T ss_dssp HTTCSEEEE
T ss_pred hcCCceEEe
Confidence 876555543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=134.65 Aligned_cols=192 Identities=15% Similarity=0.072 Sum_probs=133.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCC----hhhHHHHHhhc--
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLEN----RASLEADIAAV-- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~----~~~~~~~~~~~-- 61 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|+++ .+++.++++..
T Consensus 23 ~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~~ 102 (288)
T 2x9g_A 23 APAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFR 102 (288)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHHH
Confidence 468999999999999999999999998876 3478888 88777776643
Q ss_pred ---CCCEEEEccccCCCCC------cc-----hhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCC
Q 022112 62 ---KPTHVFNAAGVTGRPN------VD-----WCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATG 116 (302)
Q Consensus 62 ---~~d~Vi~~a~~~~~~~------~~-----~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~ 116 (302)
++|+|||+||...... .. ....++...+++|+.++.++++++... +.++|++||.
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~ 182 (288)
T 2x9g_A 103 AFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDA 182 (288)
T ss_dssp HHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEECCT
T ss_pred hcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEecc
Confidence 7999999999753111 12 344567788999999999999888643 2369999987
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhc
Q 022112 117 CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITR 188 (302)
Q Consensus 117 ~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~ 188 (302)
..+.. .+....|+.+|...+.+.+.+... ..++|++++.+. .........+..
T Consensus 183 ~~~~~------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~~~~~~~~~~~ 243 (288)
T 2x9g_A 183 MVDQP------------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AMGEEEKDKWRR 243 (288)
T ss_dssp TTTSC------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TSCHHHHHHHHH
T ss_pred cccCC------------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-ccChHHHHHHHh
Confidence 65542 123478999999888887654321 568888887764 111112222221
Q ss_pred ccccccccCCc-ccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 189 YEKVVNIPNSM-TILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 189 ~~~~~~~~~~~-i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
..+ ...+ ...+|+|++++.++... .+..+++.+|..
T Consensus 244 ~~p----~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 284 (288)
T 2x9g_A 244 KVP----LGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLS 284 (288)
T ss_dssp TCT----TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hCC----CCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcchh
Confidence 111 1234 68999999999998652 234788877644
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-17 Score=135.18 Aligned_cols=193 Identities=10% Similarity=0.009 Sum_probs=130.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC------------------ChhhHHHHHhhc-----CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE------------------NRASLEADIAAV-----KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~------------------~~~~~~~~~~~~-----~~d~Vi~~a 70 (302)
|+++|||||+|+||+++++.|+++|++|++...+.. |.+++.+++++. ++|+|||+|
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nA 80 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSND 80 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 457999999999999999999999999998544321 333444444322 799999999
Q ss_pred ccC-CC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 71 GVT-GR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 71 ~~~-~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
|.. .. +..+....++...+++|+.++.++++++.. . +.++|++||...+... +..
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~ 142 (254)
T 1zmt_A 81 IFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW------------------KEL 142 (254)
T ss_dssp CCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC------------------TTC
T ss_pred CcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC------------------CCc
Confidence 965 21 112234457788999999999999888743 2 3479999997655321 233
Q ss_pred CchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC--chhhH-------HHHhcccccccccCCcccHhhHH
Q 022112 144 SFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN--PRNFI-------TKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~--~~~~~-------~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
..|+.+|...+.+.+.+.. ...++|++++|+.... ...+. ..+.... ....+.+.+|+|
T Consensus 143 ~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~----p~~~~~~p~dvA 218 (254)
T 1zmt_A 143 STYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVT----ALQRLGTQKELG 218 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHS----SSSSCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccC----CCCCCcCHHHHH
Confidence 7899999999988766432 2779999997754211 11111 1111110 123467899999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++++.++... .+..+++.++..
T Consensus 219 ~~v~~l~s~~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 219 ELVAFLASGSCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp HHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred HHHHHHhCcccCCccCCEEEECCCch
Confidence 9999988753 245888887643
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=133.68 Aligned_cols=195 Identities=12% Similarity=0.016 Sum_probs=134.6
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc----
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
.+++|||||+ |+||.+++++|+++|++|++ +.+|++|.+++.+++++.
T Consensus 20 ~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 99 (267)
T 3gdg_A 20 GKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADF 99 (267)
T ss_dssp TCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHHc
Confidence 3589999999 89999999999999999877 468899999988877754
Q ss_pred -CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----Hh-CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DK-GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
++|+|||+||...... .+....++...+++|+.++.++++++. +. ..++|++||...+...
T Consensus 100 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 167 (267)
T 3gdg_A 100 GQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIAN------------ 167 (267)
T ss_dssp SCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccC------------
Confidence 8899999999763111 122456778899999999999999883 33 3469999987654321
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
..+....|+.+|...+.+++.+... ..+.|+++..+-.. .+......+.... ..+.+.+.+|+|
T Consensus 168 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~----~~~r~~~~~dva 239 (267)
T 3gdg_A 168 ----FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFVPKETQQLWHSMI----PMGRDGLAKELK 239 (267)
T ss_dssp ----SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGSCHHHHHHHHTTS----TTSSCEETHHHH
T ss_pred ----CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhCCHHHHHHHHhcC----CCCCCcCHHHHH
Confidence 0113368999999999988664322 33455554432110 0111222221111 234567899999
Q ss_pred HHHHHHHhcC----CCCeEEecCCCc
Q 022112 207 PISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++++.++... .+.++++.+|..
T Consensus 240 ~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 240 GAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp HHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred hHhheeecCccccccCCEEEECCcee
Confidence 9999988652 245888888754
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-17 Score=136.40 Aligned_cols=184 Identities=15% Similarity=-0.022 Sum_probs=127.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEE------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++||||||+|+||++++++|++ +|++|++ +.+|+++.+++..++++. +
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999 9998876 467899999888877654 7
Q ss_pred CCEEEEccccCCCCCcchh-hhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCC-CCC----CCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWC-ESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSG-HPL----GSGIGF 133 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~-~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~-~~~----~~~~~~ 133 (302)
+|+|||+||....+..... ..++...+++|+.++.++++++.+. +.++|++||...+..... .|. .+..++
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~ 162 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI 162 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccccc
Confidence 9999999997631111111 3567889999999999999999875 236999999876532100 000 000111
Q ss_pred CCCC-------------------CCCCCCCchhhhHHHHHHHHHhhcC------------ceEEeeecccCCCCCCchhh
Q 022112 134 KEED-------------------TPNFVGSFYSKTKAMVEELLKNFEN------------VCTLRVRMPISSDLSNPRNF 182 (302)
Q Consensus 134 ~e~~-------------------~~~~~~~~Y~~~K~~~E~~~~~~~~------------~~~lR~~~v~g~~~~~~~~~ 182 (302)
.|++ +..|. ..|+.+|...+.+++.+.. ...++|+++..+....
T Consensus 163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~---- 237 (276)
T 1wma_A 163 TEEELVGLMNKFVEDTKKGVHQKEGWPS-SAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP---- 237 (276)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTTTTTCCS-CHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT----
T ss_pred chhhhhhhhhhhhhhhcccccccCCCcc-chhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc----
Confidence 2211 11233 7899999999988765421 1456666665432100
Q ss_pred HHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 183 ITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
..+.+.+|+|++++.++..
T Consensus 238 --------------~~~~~~~~~a~~~~~l~~~ 256 (276)
T 1wma_A 238 --------------KATKSPEEGAETPVYLALL 256 (276)
T ss_dssp --------------TCSBCHHHHTHHHHHHHSC
T ss_pred --------------cccCChhHhhhhHhhhhcC
Confidence 2467899999999998864
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-16 Score=131.62 Aligned_cols=182 Identities=12% Similarity=0.041 Sum_probs=127.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++. ++|
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 86 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLD 86 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999998876 467999999888777643 799
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
++||+||..... ..+....++...+++|+.++.++++++.. .+.++|++||...+.+
T Consensus 87 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------------ 148 (247)
T 2jah_A 87 ILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRVN------------------ 148 (247)
T ss_dssp EEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTCC------------------
T ss_pred EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcCC------------------
Confidence 999999975211 11224457788999999999999988754 2457999999765431
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCC-chhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSN-PRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
.+....|+.+|...+.+.+.+.. ...++|+++..+.... ........... .+ ....+...+|+|++++
T Consensus 149 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~--~~-~~~~~~~pedvA~~v~ 225 (247)
T 2jah_A 149 VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQ--RI-SQIRKLQAQDIAEAVR 225 (247)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHHH--HT-TTSCCBCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHHh--cc-cccCCCCHHHHHHHHH
Confidence 12346899999999888765432 2678888876542110 00111111111 01 1112478999999999
Q ss_pred HHHhcC
Q 022112 211 EMAKRN 216 (302)
Q Consensus 211 ~~~~~~ 216 (302)
.++..+
T Consensus 226 ~l~s~~ 231 (247)
T 2jah_A 226 YAVTAP 231 (247)
T ss_dssp HHHHSC
T ss_pred HHhCCC
Confidence 998764
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=138.63 Aligned_cols=185 Identities=12% Similarity=0.009 Sum_probs=109.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------ecCCCChhh---HHHHHhhc-CCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------SGRLENRAS---LEADIAAV-KPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------~~dl~~~~~---~~~~~~~~-~~d~Vi~~a 70 (302)
++++|||||+|+||+++++.|++ |+.|+++ .+|+++.+. +.+.++.. ++|+|||+|
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~~A 83 (245)
T 3e9n_A 5 KKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVHAA 83 (245)
T ss_dssp -CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEECC
T ss_pred CCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEECC
Confidence 45899999999999999999987 8888773 334433322 11112222 789999999
Q ss_pred ccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHH----HhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 71 GVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCR----DKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 71 ~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
|....... .....++...+++|+.++.++++++. +.+.++|++||...+.+. +....
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------------~~~~~ 145 (245)
T 3e9n_A 84 AVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNGPH------------------PGNTI 145 (245)
T ss_dssp ----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC----------------------------CHH
T ss_pred CcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccccCC------------------CCchH
Confidence 97631111 12445677889999999888777764 345679999998765522 23478
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
|+.+|...+.+++.+... ..++|+.+..+. ...+............+++.+|+|++++.+++.+.
T Consensus 146 Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~-------~~~~~~~~~~~~~~~~~~~p~dvA~~i~~l~~~~~ 218 (245)
T 3e9n_A 146 YAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPM-------LQGLMDSQGTNFRPEIYIEPKEIANAIRFVIDAGE 218 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------CCGGGSCHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCch-------hhhhhhhhhcccccccCCCHHHHHHHHHHHHcCCC
Confidence 999999999988765332 556777665542 11111111001112347789999999999998764
Q ss_pred C-CeEEec
Q 022112 218 T-GIWNFT 224 (302)
Q Consensus 218 ~-~~~~~~ 224 (302)
. +++|+.
T Consensus 219 ~~~~~~i~ 226 (245)
T 3e9n_A 219 TTQITNVD 226 (245)
T ss_dssp TEEEEEEE
T ss_pred ccceeeeE
Confidence 4 467664
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=136.50 Aligned_cols=193 Identities=12% Similarity=0.060 Sum_probs=134.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCChh----------------
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENRA---------------- 52 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~~---------------- 52 (302)
+++|||||+|+||+++++.|+++|++|++. .+|+++.+
T Consensus 47 k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~ 126 (328)
T 2qhx_A 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 126 (328)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccccH
Confidence 579999999999999999999999988763 36888888
Q ss_pred -hHHHHHhhc-----CCCEEEEccccCCCCC-cchh--------------hhhHHHHHHHhHHHHHHHHHHHHHh----C
Q 022112 53 -SLEADIAAV-----KPTHVFNAAGVTGRPN-VDWC--------------ESHKVETIRTNVVGTLTLADVCRDK----G 107 (302)
Q Consensus 53 -~~~~~~~~~-----~~d~Vi~~a~~~~~~~-~~~~--------------~~~~~~~~~~n~~~~~~ll~~~~~~----~ 107 (302)
++.++++.. ++|+|||+||...... .... ..++...+++|+.++.++++++... +
T Consensus 127 ~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~ 206 (328)
T 2qhx_A 127 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 206 (328)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777644 7999999999753111 1122 4566788999999999999887642 2
Q ss_pred -------CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeeccc
Q 022112 108 -------LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPI 172 (302)
Q Consensus 108 -------~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~ 172 (302)
.++|++||...+.. .+....|+.+|...+.+.+.++.. ..++|+++.
T Consensus 207 ~~~~~~~g~IV~isS~~~~~~------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~ 268 (328)
T 2qhx_A 207 AKHRGTNYSIINMVDAMTNQP------------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV 268 (328)
T ss_dssp GGGSCSCEEEEEECCTTTTSC------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred CcCCCCCcEEEEECchhhccC------------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccc
Confidence 36999999765432 123478999999999987665322 668888877
Q ss_pred CCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 173 SSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 173 g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
.+. .....+...+....+ ...-+...+|+|++++.++... .+..+++.+|..+
T Consensus 269 T~~-~~~~~~~~~~~~~~p---~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~~ 325 (328)
T 2qhx_A 269 LVD-DMPPAVWEGHRSKVP---LYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSL 325 (328)
T ss_dssp CCC-CSCHHHHHHHHTTCT---TTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCc-cccHHHHHHHHhhCC---CCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCCccc
Confidence 653 121222222222111 1114678999999999988642 2348888887543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=132.74 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=133.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. +
T Consensus 8 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 87 (265)
T 3lf2_A 8 EAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGC 87 (265)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999998876 458999999888777654 7
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||..... ..+....++...+++|+.++.++++++... +.++|++||...+.+.
T Consensus 88 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 153 (265)
T 3lf2_A 88 ASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE-------------- 153 (265)
T ss_dssp CSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC--------------
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC--------------
Confidence 99999999976311 112345677889999999999999988542 2359999987654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-----------CchhhHHHHhcccccccccC
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-----------NPRNFITKITRYEKVVNIPN 197 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-----------~~~~~~~~~~~~~~~~~~~~ 197 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+... ....+...+..... ....
T Consensus 154 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~ 227 (265)
T 3lf2_A 154 ----PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ--IPLG 227 (265)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT--CTTC
T ss_pred ----CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC--CCcC
Confidence 23478999999999988765432 44555555432100 00001111100000 1123
Q ss_pred CcccHhhHHHHHHHHHhcC---C-CCeEEecCCCc
Q 022112 198 SMTILDELLPISIEMAKRN---L-TGIWNFTNPGV 228 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~~ 228 (302)
.+...+|+|++++.++... . +..+++.+|..
T Consensus 228 r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 228 RLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSCC
T ss_pred CCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCCc
Confidence 4678999999999988742 2 34788887643
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=132.30 Aligned_cols=194 Identities=12% Similarity=0.058 Sum_probs=134.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------------------ecCCCChhhHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------------------SGRLENRASLEA 56 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------------------~~dl~~~~~~~~ 56 (302)
++++|||||+|+||+++++.|+++|++|+++ .+|++|.+++.+
T Consensus 11 ~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 90 (277)
T 3tsc_A 11 GRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLRK 90 (277)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 4689999999999999999999999988753 468999988887
Q ss_pred HHhhc-----CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCC
Q 022112 57 DIAAV-----KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSG 124 (302)
Q Consensus 57 ~~~~~-----~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~ 124 (302)
++++. ++|++||+||....... +....++...+++|+.++.++++++.. . +.++|++||...+...
T Consensus 91 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 168 (277)
T 3tsc_A 91 VVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQ-- 168 (277)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCC--
Confidence 77642 79999999997632111 234567788999999999999988643 2 3469999997655421
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh----ccccc
Q 022112 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT----RYEKV 192 (302)
Q Consensus 125 ~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~----~~~~~ 192 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.. ...+..... .....
T Consensus 169 ----------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~--~~~~~~~~~~~~~~~~~~ 230 (277)
T 3tsc_A 169 ----------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMG--SGDMVTAVGQAMETNPQL 230 (277)
T ss_dssp ----------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGG--SHHHHHHHHHHHHTCGGG
T ss_pred ----------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcc--cchhhhhhhhcccccHHH
Confidence 23478999999999988765432 4566666654321 011111111 11111
Q ss_pred c-----cccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 193 V-----NIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 193 ~-----~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
. ..+.-+.+.+|+|++++.++... .+..+++.+|.
T Consensus 231 ~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 231 SHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp TTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 0 11223778999999999988653 24588888864
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-16 Score=132.91 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=128.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|++++.++++.. ++|
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id 86 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKID 86 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 468999999999999999999999999876 457999999887777643 799
Q ss_pred EEEEccccC-C-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVT-G-RPNVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~-~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+|||+||.. . .+.......++...+++|+.++.++++++.+. + .++|++||...+.+.
T Consensus 87 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 151 (262)
T 1zem_A 87 FLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP--------------- 151 (262)
T ss_dssp EEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC---------------
T ss_pred EEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC---------------
Confidence 999999964 1 11112244577889999999999999887653 3 369999997655421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC----------------chh-hHHHHhccccc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN----------------PRN-FITKITRYEKV 192 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~----------------~~~-~~~~~~~~~~~ 192 (302)
+....|+.+|...+.+.+.++.. ..++|+++..+.... ... +...+....
T Consensus 152 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (262)
T 1zem_A 152 ---PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV-- 226 (262)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTS--
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcC--
Confidence 12368999999988887664321 556776654321000 000 111111000
Q ss_pred ccccCCcccHhhHHHHHHHHHhcC---CCC-eEEecC
Q 022112 193 VNIPNSMTILDELLPISIEMAKRN---LTG-IWNFTN 225 (302)
Q Consensus 193 ~~~~~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~ 225 (302)
...-+...+|+|++++.++... ..| .+.+.+
T Consensus 227 --p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 261 (262)
T 1zem_A 227 --PMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 261 (262)
T ss_dssp --TTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred --CCCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence 1133668899999999988642 233 666654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=135.02 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=123.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 86 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYG 86 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999999877 347999999888777643
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
++|++||+||....+.......++...+++|+.++.++++++.. .+ .++|++||...+.+.
T Consensus 87 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-------------- 152 (250)
T 3nyw_A 87 AVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF-------------- 152 (250)
T ss_dssp CEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC---------------------
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCC--------------
Confidence 79999999997642223445567789999999999999988743 33 368999886543211
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
++...|+.+|...+.+.+.++.. ..+|+..+..+.. ...+....... .....++..+|+|++++.++
T Consensus 153 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v--~T~~~~~~~~~----~~~~~~~~p~dva~~v~~l~ 222 (250)
T 3nyw_A 153 ----ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWV--NTDMAKKAGTP----FKDEEMIQPDDLLNTIRCLL 222 (250)
T ss_dssp ----CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB--CSHHHHHTTCC----SCGGGSBCHHHHHHHHHHHH
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcc--cCchhhhcCCC----cccccCCCHHHHHHHHHHHH
Confidence 12378999999999988765432 2344443332211 11233222111 11234678999999999999
Q ss_pred hcC
Q 022112 214 KRN 216 (302)
Q Consensus 214 ~~~ 216 (302)
..+
T Consensus 223 s~~ 225 (250)
T 3nyw_A 223 NLS 225 (250)
T ss_dssp TSC
T ss_pred cCC
Confidence 864
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=133.88 Aligned_cols=189 Identities=14% Similarity=0.096 Sum_probs=132.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC---cEEE--------------------------eecCCCChhhHHHHHhhc----
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI---DFTY--------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~---~V~~--------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
+++|||||+|+||+++++.|+++|+ .|++ +.+|++|.+++.+++++.
T Consensus 34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 113 (287)
T 3rku_A 34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF 113 (287)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGG
T ss_pred CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 5899999999999999999999887 6554 578999999999988764
Q ss_pred -CCCEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHH----Hh-CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCR----DK-GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 -~~d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~-~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+||... .+..+....++...+++|+.++.++++++. +. +.++|++||...+..
T Consensus 114 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~------------ 181 (287)
T 3rku_A 114 KDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDA------------ 181 (287)
T ss_dssp CSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCC------------
Confidence 7999999999652 111123456788999999999999999884 33 347999999765432
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc--c--ccccCCccc
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK--V--VNIPNSMTI 201 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~--~~~~~~~i~ 201 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+ +......... . ......++.
T Consensus 182 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~-------~~~~~~~~~~~~~~~~~~~~~p~~ 248 (287)
T 3rku_A 182 ------YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETE-------FSLVRYRGNEEQAKNVYKDTTPLM 248 (287)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESS-------HHHHHTTTCHHHHHHHHTTSCCEE
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCc-------cccccccCcHHHHHHhhcccCCCC
Confidence 123478999999999988765322 45566665442 1111111100 0 001223458
Q ss_pred HhhHHHHHHHHHhcCC----CCeEEecCCCc
Q 022112 202 LDELLPISIEMAKRNL----TGIWNFTNPGV 228 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~----~~~~~~~~~~~ 228 (302)
.+|+|++++.++.... ++++++.+++.
T Consensus 249 pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 249 ADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 9999999999998643 34777777654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-17 Score=137.15 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=129.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~----~~d~ 65 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+
T Consensus 33 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~ 112 (275)
T 4imr_A 33 GRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVDI 112 (275)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCCE
Confidence 358999999999999999999999999886 567899988877776543 8999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+||...... ......++...+++|+.++.++++++.. .+ .++|++||...+..
T Consensus 113 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~------------------ 174 (275)
T 4imr_A 113 LVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRP------------------ 174 (275)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------------
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCC------------------
Confidence 999999753111 1224457788999999999999998743 33 46999999765441
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC----chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN----PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
.+....|+.+|...+.+.+.++.. ..++|+++..+.... .......+.... ....-+...+|+|+
T Consensus 175 ~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~---~p~~r~~~pedvA~ 251 (275)
T 4imr_A 175 KSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTL---NWMGRAGRPEEMVG 251 (275)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHH---STTCSCBCGGGGHH
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhc---CccCCCcCHHHHHH
Confidence 122356999999999988765432 345555553320000 000111111110 01234567899999
Q ss_pred HHHHHHhcC----CCCeEEecCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~ 226 (302)
+++.++... .+.++++.+|
T Consensus 252 ~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 252 AALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp HHHHHHSGGGTTCCSCEEEESSC
T ss_pred HHHHHcCcccCCCCCCEEEeCCC
Confidence 999988753 2447887765
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-16 Score=131.52 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=122.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++.. ++|+|
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l 101 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL 101 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 68999999999999999999999999876 457999999999888754 67999
Q ss_pred EEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-C-eEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-L-ILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 67 i~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
||+||... .+.......++...+++|+.++.++++++. +.+ . ++|++||...+..
T Consensus 102 vnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~----------------- 164 (272)
T 2nwq_A 102 INNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP----------------- 164 (272)
T ss_dssp EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC-----------------
T ss_pred EECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC-----------------
Confidence 99999752 111123346778899999999888777664 333 4 7999999765431
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
.+....|+.+|...+.+.+.+... ..++|+++..+.... .+........... ....++..+|+|++++
T Consensus 165 -~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~--~~~~~~~~~~~~~-~~~~~~~pedvA~~v~ 240 (272)
T 2nwq_A 165 -YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLV--RFGGDQARYDKTY-AGAHPIQPEDIAETIF 240 (272)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-----------------------CCCCBCHHHHHHHHH
T ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhc--ccccchHHHHHhh-ccCCCCCHHHHHHHHH
Confidence 123368999999999998775432 556777665432100 0000000000000 0123578999999999
Q ss_pred HHHhcC
Q 022112 211 EMAKRN 216 (302)
Q Consensus 211 ~~~~~~ 216 (302)
.++..+
T Consensus 241 ~l~s~~ 246 (272)
T 2nwq_A 241 WIMNQP 246 (272)
T ss_dssp HHHTSC
T ss_pred HHhCCC
Confidence 998754
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.1e-16 Score=130.26 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=132.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|+++.+++.+++++. ++|++|
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv 84 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLI 84 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 468999999999999999999999999887 568999999888777654 899999
Q ss_pred EccccCCCCCc------chhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNV------DWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 68 ~~a~~~~~~~~------~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+||....... +.....+...+++|+.++.++++++.. .+.++|++||...+...
T Consensus 85 nnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------------- 149 (281)
T 3zv4_A 85 PNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPN--------------- 149 (281)
T ss_dssp CCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSS---------------
T ss_pred ECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCC---------------
Confidence 99997521111 111234677889999999999988754 34579999987654321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc-------eEEeeecccCCCCCCc-h----------hhHHHHhcccccccccCCc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV-------CTLRVRMPISSDLSNP-R----------NFITKITRYEKVVNIPNSM 199 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~-------~~lR~~~v~g~~~~~~-~----------~~~~~~~~~~~~~~~~~~~ 199 (302)
+....|+.+|...+.+.+.++.. ..+.|+++..+-.... . .+...+.... ..+.+
T Consensus 150 ---~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~ 222 (281)
T 3zv4_A 150 ---GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVL----PIGRM 222 (281)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTC----TTSSC
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcC----CCCCC
Confidence 23368999999999988665322 4456666544321100 0 0111111111 12346
Q ss_pred ccHhhHHHHHHHHHh-cC----CCCeEEecCCCcc
Q 022112 200 TILDELLPISIEMAK-RN----LTGIWNFTNPGVV 229 (302)
Q Consensus 200 i~v~D~a~~~~~~~~-~~----~~~~~~~~~~~~~ 229 (302)
...+|+|.+++.++. .. .+..+++.+|..+
T Consensus 223 ~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 223 PALEEYTGAYVFFATRGDSLPATGALLNYDGGMGV 257 (281)
T ss_dssp CCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGGG
T ss_pred CCHHHHHHHHHHhhcccccccccCcEEEECCCCcc
Confidence 789999999999887 32 2348888887543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=135.12 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=129.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
.+++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 90 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEFG 90 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999998876 468999999988877644
Q ss_pred CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++|++||+||....... +....++...+++|+.++.++++++... +.++|++||...+....
T Consensus 91 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~-------------- 156 (262)
T 3ksu_A 91 KVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTG-------------- 156 (262)
T ss_dssp SEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHC--------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCC--------------
Confidence 79999999997631111 2244577889999999999999999874 33699999987655321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccc-----cccccCCcccHhh
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEK-----VVNIPNSMTILDE 204 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~v~D 204 (302)
....|+.+|...+.+.+.++.. ..+.|+.+.. .+......... .......+...+|
T Consensus 157 ----~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T-------~~~~~~~~~~~~~~~~~~~~~~r~~~ped 225 (262)
T 3ksu_A 157 ----FYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDT-------SFFYGQETKESTAFHKSQAMGNQLTKIED 225 (262)
T ss_dssp ----CCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCT-------HHHHTCC------------CCCCSCCGGG
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcC-------ccccccCchHHHHHHHhcCcccCCCCHHH
Confidence 2368999999999988765432 3344444422 12111100000 0011234678999
Q ss_pred HHHHHHHHHhcC---CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN---LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~---~~~~~~~~~~~~~s 230 (302)
+|++++.++... .+..+++.++....
T Consensus 226 vA~~v~~L~s~~~~itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 226 IAPIIKFLTTDGWWINGQTIFANGGYTTR 254 (262)
T ss_dssp THHHHHHHHTTTTTCCSCEEEESTTCCCC
T ss_pred HHHHHHHHcCCCCCccCCEEEECCCccCC
Confidence 999999988752 23488888775443
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-15 Score=125.18 Aligned_cols=194 Identities=10% Similarity=0.050 Sum_probs=131.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
|.++||||||++.||+.+++.|++.|.+|++ +.+|++|++++++++++. ++|++|
T Consensus 1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLV 80 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLV 80 (247)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 4568999999999999999999999999887 789999999887776543 899999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
|+||...... .+...+++...+++|+.++..+.+++.+ .+-++|++||...+.+ .|.
T Consensus 81 NNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~~------------------~~~ 142 (247)
T 3ged_A 81 NNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQS------------------EPD 142 (247)
T ss_dssp ECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTSC------------------CTT
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccccC------------------CCC
Confidence 9999763111 1224467889999999999888877754 3567999999765432 123
Q ss_pred CCchhhhHHHHHHHHHhhcCc--eEEeeecccCCCCC--CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC--
Q 022112 143 GSFYSKTKAMVEELLKNFENV--CTLRVRMPISSDLS--NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--~~lR~~~v~g~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
...|+.+|.....+.+.++.. ..+|+..|...... ....+.......-+ ..-+...+|+|.+++.+++..
T Consensus 143 ~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~~~~~~~~~~P----l~R~g~pediA~~v~fL~s~~~i 218 (247)
T 3ged_A 143 SEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQEFTQEDCAAIP----AGKVGTPKDISNMVLFLCQQDFI 218 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---CCHHHHHTST----TSSCBCHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHHHHHHHHhcCC----CCCCcCHHHHHHHHHHHHhCCCC
Confidence 368999999999887665322 13444333221110 11122222222111 122456899999999988753
Q ss_pred CCCeEEecCCCc
Q 022112 217 LTGIWNFTNPGV 228 (302)
Q Consensus 217 ~~~~~~~~~~~~ 228 (302)
.+.++.+.+|-.
T Consensus 219 TG~~i~VDGG~s 230 (247)
T 3ged_A 219 TGETIIVDGGMS 230 (247)
T ss_dssp CSCEEEESTTGG
T ss_pred CCCeEEECcCHH
Confidence 234788877643
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=130.24 Aligned_cols=182 Identities=10% Similarity=0.022 Sum_probs=128.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc-
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
++++|||||+|+||++++++|+++|++|++ +.+|++|.+++.+++++.
T Consensus 9 ~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 88 (285)
T 3sc4_A 9 GKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKTV 88 (285)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999998876 446889998888777654
Q ss_pred ----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
++|++||+||...... ......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 89 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 159 (285)
T 3sc4_A 89 EQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK--------- 159 (285)
T ss_dssp HHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC---------
Confidence 8999999999763111 12344577888999999999999998764 2469999986543311
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..... ....+.......... ...+...+|+|++
T Consensus 160 --------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~-v~t~~~~~~~~~~~~---~~r~~~pedvA~~ 227 (285)
T 3sc4_A 160 --------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTT-VATAAVQNLLGGDEA---MARSRKPEVYADA 227 (285)
T ss_dssp --------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSC-BCCHHHHHHHTSCCC---CTTCBCTHHHHHH
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCc-cccHHHHhhcccccc---ccCCCCHHHHHHH
Confidence 012378999999999988776432 3455544433211 122344444332221 2345678999999
Q ss_pred HHHHHhcC
Q 022112 209 SIEMAKRN 216 (302)
Q Consensus 209 ~~~~~~~~ 216 (302)
++.++...
T Consensus 228 ~~~l~s~~ 235 (285)
T 3sc4_A 228 AYVVLNKP 235 (285)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCCc
Confidence 99999864
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-17 Score=144.73 Aligned_cols=146 Identities=10% Similarity=-0.011 Sum_probs=103.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-------cEEEeecC-----------------------CCChhhHHHHHhhcC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGSGR-----------------------LENRASLEADIAAVK 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~~d-----------------------l~~~~~~~~~~~~~~ 62 (302)
+.|||+||||+||||++++..|+++|+ +|+++..+ +.+.+.+.++++ +
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~--~ 80 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--D 80 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC--C
Confidence 457999999999999999999999986 67774322 111123445555 8
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C--eEEEEcCCc-cccCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L--ILINYATGC-IFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|+|||+|+... . ...++.+.++.|+.++.++++++++.+ . +++++|+.. +.. ++.++..
T Consensus 81 ~D~Vih~Ag~~~---~--~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----------~~~~~~~ 144 (327)
T 1y7t_A 81 ADYALLVGAAPR---K--AGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----------LIAYKNA 144 (327)
T ss_dssp CSEEEECCCCCC---C--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----------HHHHHTC
T ss_pred CCEEEECCCcCC---C--CCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----------HHHHHHc
Confidence 999999999763 2 235678899999999999999999975 3 567766643 111 0111111
Q ss_pred -CCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCC
Q 022112 139 -PNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDL 176 (302)
Q Consensus 139 -~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~ 176 (302)
..++...|+.+|...|++...+. +...+|+.++||++.
T Consensus 145 ~~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 145 PGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp TTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred CCCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 12344789999999999875543 337899999999754
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=128.38 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=131.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------------------ecCCCChh---------------
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------------------SGRLENRA--------------- 52 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------------------~~dl~~~~--------------- 52 (302)
++++|||||+|+||+++++.|+++|++|++. .+|+++.+
T Consensus 9 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (291)
T 1e7w_A 9 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 88 (291)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccch
Confidence 3589999999999999999999999988763 36888888
Q ss_pred --hHHHHHhhc-----CCCEEEEccccCCCCC-cchh--------------hhhHHHHHHHhHHHHHHHHHHHHH----h
Q 022112 53 --SLEADIAAV-----KPTHVFNAAGVTGRPN-VDWC--------------ESHKVETIRTNVVGTLTLADVCRD----K 106 (302)
Q Consensus 53 --~~~~~~~~~-----~~d~Vi~~a~~~~~~~-~~~~--------------~~~~~~~~~~n~~~~~~ll~~~~~----~ 106 (302)
++.++++.. ++|++||+||...... .... ..++...+++|+.++.++++++.. .
T Consensus 89 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~ 168 (291)
T 1e7w_A 89 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 168 (291)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 877776644 8999999999753111 1122 456778999999999999988764 2
Q ss_pred C-------CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecc
Q 022112 107 G-------LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMP 171 (302)
Q Consensus 107 ~-------~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v 171 (302)
+ .++|++||...+.+ .+....|+.+|...+.+.+.+... ..++|+++
T Consensus 169 ~~~~~~~~g~Iv~isS~~~~~~------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 230 (291)
T 1e7w_A 169 PAKHRGTNYSIINMVDAMTNQP------------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230 (291)
T ss_dssp CGGGSCSCEEEEEECCTTTTSC------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred CCCCCCCCcEEEEEechhhcCC------------------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCc
Confidence 3 35999999765432 123478999999999987665322 45666665
Q ss_pred cCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 172 ISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 172 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
..+. ..+..+...+.... ....-+...+|+|++++.++... .+..+++.++..+
T Consensus 231 ~T~~-~~~~~~~~~~~~~~---p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~~ 288 (291)
T 1e7w_A 231 VLVD-DMPPAVWEGHRSKV---PLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSL 288 (291)
T ss_dssp CCGG-GSCHHHHHHHHTTC---TTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cCCc-cCCHHHHHHHHhhC---CCCCCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCccc
Confidence 4321 00011222221111 11113668999999999988642 2347888776543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-16 Score=128.81 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=123.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCC--CChhhHHHHHhhc----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRL--ENRASLEADIAAV---- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl--~~~~~~~~~~~~~---- 61 (302)
.++++|||||+|+||++++++|+++|++|++ +.+|+ ++.+++.++++..
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 92 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHEF 92 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHhC
Confidence 3568999999999999999999999999887 23445 8888877776643
Q ss_pred -CCCEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|+|||+||.... +.......++...+++|+.++.++++++. +.+ .++|++||...+.+
T Consensus 93 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~------------ 160 (247)
T 3i1j_A 93 GRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKG------------ 160 (247)
T ss_dssp SCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSC------------
T ss_pred CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCC------------
Confidence 89999999997521 11122456778899999999999999884 333 35888888665432
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..+.. ...+......... ...+...+|+|+++
T Consensus 161 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v--~t~~~~~~~~~~~----~~~~~~p~dva~~~ 228 (247)
T 3i1j_A 161 ------RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGAT--RTGMRAQAYPDEN----PLNNPAPEDIMPVY 228 (247)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCC--SSHHHHHHSTTSC----GGGSCCGGGGTHHH
T ss_pred ------CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcc--cCccchhcccccC----ccCCCCHHHHHHHH
Confidence 123478999999999988765322 4566655543221 2223333222111 22345789999999
Q ss_pred HHHHhc
Q 022112 210 IEMAKR 215 (302)
Q Consensus 210 ~~~~~~ 215 (302)
+.++..
T Consensus 229 ~~l~s~ 234 (247)
T 3i1j_A 229 LYLMGP 234 (247)
T ss_dssp HHHHSG
T ss_pred HHHhCc
Confidence 998864
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-15 Score=137.22 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=137.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEE---------------------------eecCCCChhhHHHHHhhc---
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTY---------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
..++||||||+|+||.+++++|+++|++ |++ +.+|++|.+++..+++..
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~~ 304 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 304 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999999986 544 568999999999988854
Q ss_pred -CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCcc-ccCCCCCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCI-FEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~v-y~~~~~~~~~~~~~~~e~~ 137 (302)
.+|+|||+||....... .....+....+.+|+.++.++.+++++.+.. ||++||... ++..
T Consensus 305 g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~--------------- 369 (486)
T 2fr1_A 305 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP--------------- 369 (486)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT---------------
T ss_pred CCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC---------------
Confidence 56999999997631111 2244567788899999999999999887654 899998653 4421
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc----CceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE----NVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~----~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
....|+.+|...+.+.+.+. ....++++.+.+.+... ...... .......+++.+|+++++..++
T Consensus 370 ----g~~~Yaaaka~l~~la~~~~~~gi~v~~i~pG~~~~~gm~~-~~~~~~------~~~~g~~~i~~e~~a~~l~~~l 438 (486)
T 2fr1_A 370 ----GLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMAE-GPVADR------FRRHGVIEMPPETACRALQNAL 438 (486)
T ss_dssp ----TCTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC-------------------CTTTTEECBCHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHhcCCeEEEEECCeeCCCcccc-hhHHHH------HHhcCCCCCCHHHHHHHHHHHH
Confidence 23789999999998875542 33778888876642110 000000 1112235689999999999999
Q ss_pred hcCCCCeEEecCCCccCHHHHHHHHHhh
Q 022112 214 KRNLTGIWNFTNPGVVSHNEILEMYRQY 241 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~s~~e~~~~~~~~ 241 (302)
+.+...+. +. .+.|..+...+...
T Consensus 439 ~~~~~~~~-v~---~~d~~~~~~~~~~~ 462 (486)
T 2fr1_A 439 DRAEVCPI-VI---DVRWDRFLLAYTAQ 462 (486)
T ss_dssp HTTCSSCE-EC---EECHHHHHHHHTSS
T ss_pred hCCCCeEE-EE---eCCHHHHhhhhccc
Confidence 87554332 22 25677776655443
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=126.12 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=123.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEe-e--cCC---------------CChhhHHHHHh----hc-CCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-S--GRL---------------ENRASLEADIA----AV-KPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~--~dl---------------~~~~~~~~~~~----~~-~~d~Vi~~a~ 71 (302)
+++|||||+|+||+++++.|+++|++|++. . .+. .|.+++.++++ .. ++|+|||+||
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag 81 (244)
T 1zmo_A 2 VIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSNDY 81 (244)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGGGSSCEEEEEECCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 589999999999999999999999999887 3 431 12233322222 22 6899999999
Q ss_pred cCCC----CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTGR----PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
.... +..+....++...+++|+.++.++++++.. .+ .++|++||...+... +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------------------~~ 143 (244)
T 1zmo_A 82 IPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL------------------AY 143 (244)
T ss_dssp CCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC------------------TT
T ss_pred cCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC------------------CC
Confidence 7631 111234457788999999999999888753 33 469999997665421 23
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchh-----hHHHHhcccccccccCCcccHhhHHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRN-----FITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
...|+.+|...+.+.+.+... ..++|+++..+....... ....+... . . ....+...+|+|+++
T Consensus 144 ~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~-~-p~~r~~~pe~vA~~v 220 (244)
T 1zmo_A 144 NPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDR-D-V-PLGRLGRPDEMGALI 220 (244)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHH-H-C-TTCSCBCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhc-C-C-CCCCCcCHHHHHHHH
Confidence 478999999999987665322 556777664431100011 11111110 0 0 112467899999999
Q ss_pred HHHHhcC----CCCeEEecCC
Q 022112 210 IEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~ 226 (302)
+.++... .+..+.+.++
T Consensus 221 ~~l~s~~~~~~tG~~i~vdgG 241 (244)
T 1zmo_A 221 TFLASRRAAPIVGQFFAFTGG 241 (244)
T ss_dssp HHHHTTTTGGGTTCEEEESTT
T ss_pred HHHcCccccCccCCEEEeCCC
Confidence 9988753 2346777665
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=118.88 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=134.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-CCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-KPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~ 74 (302)
++++|||||++.||+.+++.|++.|.+|++ +.+|++|+++++++++++ ++|++||+||...
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi~~ 90 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGISR 90 (242)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 568999999999999999999999999887 678999999999988876 7899999999763
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
+..+....+++..+++|+.++..+.+++.. .+-++|++||....-+ .+....|+.+|
T Consensus 91 -~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~------------------~~~~~~Y~asK 151 (242)
T 4b79_A 91 -DREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTFG------------------SADRPAYSASK 151 (242)
T ss_dssp -GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTSC------------------CSSCHHHHHHH
T ss_pred -CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccCC------------------CCCCHHHHHHH
Confidence 222334567889999999999888877643 3557999999654321 12346899999
Q ss_pred HHHHHHHHhhcCc---eEEeeecccCCCCC--------CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---
Q 022112 151 AMVEELLKNFENV---CTLRVRMPISSDLS--------NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--- 216 (302)
Q Consensus 151 ~~~E~~~~~~~~~---~~lR~~~v~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--- 216 (302)
.....+.+.++.. ..+|+..|-..... ........+....+ ..-+-..+|+|.+++.++...
T Consensus 152 aav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~P----lgR~g~peeiA~~v~fLaSd~a~~ 227 (242)
T 4b79_A 152 GAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTP----LARWGEAPEVASAAAFLCGPGASF 227 (242)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCT----TCSCBCHHHHHHHHHHHTSGGGTT
T ss_pred HHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCC----CCCCcCHHHHHHHHHHHhCchhcC
Confidence 9999988775432 34554443322110 11123333332211 122456899999999988642
Q ss_pred -CCCeEEecCCC
Q 022112 217 -LTGIWNFTNPG 227 (302)
Q Consensus 217 -~~~~~~~~~~~ 227 (302)
.+..+.+.+|-
T Consensus 228 iTG~~l~VDGG~ 239 (242)
T 4b79_A 228 VTGAVLAVDGGY 239 (242)
T ss_dssp CCSCEEEESTTG
T ss_pred ccCceEEECccH
Confidence 23477777653
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=132.30 Aligned_cols=199 Identities=15% Similarity=0.144 Sum_probs=140.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEE---------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTY---------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
..++||||||+|+||.+++++|.++|++ |++ +.+|++|.+++.++++...+|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld 337 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN 337 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence 4568999999999999999999999985 543 458999999999999866799
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEcCCc-cccCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK-GL-ILINYATGC-IFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|||+||....... ..........+.+|+.++.++.++++.. +. +||++||.. +++..
T Consensus 338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~------------------ 399 (511)
T 2z5l_A 338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNA------------------ 399 (511)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCT------------------
T ss_pred EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCC------------------
Confidence 99999997631111 1233466778899999999999998865 54 499999874 44421
Q ss_pred CCCCchhhhHHHHHHHHHhhcC----ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN----VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
....|+.+|...+.+++.+.. ..+++++.+-..+.... .....+. .....+++.+|+++++..++.++
T Consensus 400 -g~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~tgm~~~-~~~~~~~------~~g~~~l~~e~~a~~l~~al~~~ 471 (511)
T 2z5l_A 400 -GQGAYAAANAALDALAERRRAAGLPATSVAWGLWGGGGMAAG-AGEESLS------RRGLRAMDPDAAVDALLGAMGRN 471 (511)
T ss_dssp -TBHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCSTTCCCC-HHHHHHH------HHTBCCBCHHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccCCccccc-ccHHHHH------hcCCCCCCHHHHHHHHHHHHhCC
Confidence 236899999999998876533 37788877633322111 1111111 12235688999999999999876
Q ss_pred CCCeEEecCCCccCHHHHHHHHHhh
Q 022112 217 LTGIWNFTNPGVVSHNEILEMYRQY 241 (302)
Q Consensus 217 ~~~~~~~~~~~~~s~~e~~~~~~~~ 241 (302)
...++ +. .+.|..+...+...
T Consensus 472 ~~~v~-v~---~~d~~~~~~~~~~~ 492 (511)
T 2z5l_A 472 DVCVT-VV---DVDWERFAPATNAI 492 (511)
T ss_dssp CSEEE-EC---CBCHHHHHHHHHHH
T ss_pred CCEEE-EE---eCCHHHHHhhhccc
Confidence 54333 32 24576666655543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=126.72 Aligned_cols=181 Identities=10% Similarity=0.015 Sum_probs=121.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc-
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
++++|||||+|.||++++++|+++|++|++ +.+|++|.+++.+++++.
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 85 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATV 85 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999998876 457899998888777644
Q ss_pred ----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
++|++||+||...... ......++...+++|+.++.++++++... +.++|++||...+...
T Consensus 86 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~--------- 156 (274)
T 3e03_A 86 DTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPA--------- 156 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHH---------
T ss_pred HHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCC---------
Confidence 8999999999763111 12334567889999999999999988542 2469999987654320
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
..+....|+.+|...+.+.+.++.. ..+|+..+..+.. ....+. ......+ ...+...+|+|++
T Consensus 157 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~-v~T~~~-~~~~~~~----~~~~~~pedvA~~ 223 (274)
T 3e03_A 157 -------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTV-IATDAI-NMLPGVD----AAACRRPEIMADA 223 (274)
T ss_dssp -------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBC-BCC--------CCC----GGGSBCTHHHHHH
T ss_pred -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcc-cccchh-hhccccc----ccccCCHHHHHHH
Confidence 0112368999999999988765432 2334333322100 001111 1111111 1125678999999
Q ss_pred HHHHHhcC
Q 022112 209 SIEMAKRN 216 (302)
Q Consensus 209 ~~~~~~~~ 216 (302)
++.++...
T Consensus 224 v~~l~s~~ 231 (274)
T 3e03_A 224 AHAVLTRE 231 (274)
T ss_dssp HHHHHTSC
T ss_pred HHHHhCcc
Confidence 99998753
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=125.68 Aligned_cols=188 Identities=13% Similarity=0.039 Sum_probs=129.8
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc--------
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-------- 61 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-------- 61 (302)
++++||||| +|+||+++++.|+++|++|++ +.+|++|++++.+++++.
T Consensus 7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~~ 86 (269)
T 2h7i_A 7 GKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAGN 86 (269)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTTC
T ss_pred CCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 358999999 999999999999999999886 457899999888877654
Q ss_pred CCCEEEEccccCC------CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTG------RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 ~~d~Vi~~a~~~~------~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|++||+||... .+.......++...+++|+.++.++++++... +.++|++||...++
T Consensus 87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~------------ 154 (269)
T 2h7i_A 87 KLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA------------ 154 (269)
T ss_dssp CEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC------------
T ss_pred CceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc------------
Confidence 7999999999752 01112244567788999999999999999764 23689998865422
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHh----------------c
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKIT----------------R 188 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~----------------~ 188 (302)
.+....|+.+|...+.+.+.+... ..++|+++..+ +...+. .
T Consensus 155 -------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~-------~~~~~~~~~~~~~~~~~~~~~~~ 220 (269)
T 2h7i_A 155 -------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTL-------AMSAIVGGALGEEAGAQIQLLEE 220 (269)
T ss_dssp -------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCH-------HHHHHHTTTTCHHHHHHHHHHHH
T ss_pred -------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccch-------hhhccccccchhhHHHHHHHHHH
Confidence 123368999999999887665322 45566554321 111110 0
Q ss_pred c-cccccccCCcccHhhHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 189 Y-EKVVNIPNSMTILDELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 189 ~-~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
. .......+.+...+|+|++++.++... ..| .+++.+|.
T Consensus 221 ~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 221 GWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred hhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEEEecCCe
Confidence 0 000111113667899999999988752 234 77777764
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=130.30 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=129.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc-
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
++++|||||+|.||+++++.|+++|++|++ +.+|++|.+++.+++++.
T Consensus 45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~ 124 (346)
T 3kvo_A 45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAI 124 (346)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 357999999999999999999999998876 347899999888887754
Q ss_pred ----CCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
++|+|||+||..... .......++...+++|+.++.++++++... + .++|++||...+...
T Consensus 125 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~--------- 195 (346)
T 3kvo_A 125 KKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPV--------- 195 (346)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGG---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCC---------
Confidence 899999999976311 122344677889999999999999998543 2 469999997654421
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
..+....|+.+|...+.+.+.++.. ..+|+..+..... ....+...+....+ ...+...+|+|+++
T Consensus 196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~-i~T~~~~~~~~~~~----~~r~~~pedvA~~v 263 (346)
T 3kvo_A 196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTA-IHTAAMDMLGGPGI----ESQCRKVDIIADAA 263 (346)
T ss_dssp -------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBC-BCCHHHHHHCC--C----GGGCBCTHHHHHHH
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCc-cccHHHHhhccccc----cccCCCHHHHHHHH
Confidence 0123478999999999988765332 2345444432210 11223333221111 22355789999999
Q ss_pred HHHHhcC--CCCeEEecC
Q 022112 210 IEMAKRN--LTGIWNFTN 225 (302)
Q Consensus 210 ~~~~~~~--~~~~~~~~~ 225 (302)
+.++... ..|.+.+.+
T Consensus 264 ~~L~s~~~~itG~~ivdg 281 (346)
T 3kvo_A 264 YSIFQKPKSFTGNFVIDE 281 (346)
T ss_dssp HHHHTSCTTCCSCEEEHH
T ss_pred HHHHhcCCCCCceEEECC
Confidence 9999762 235443443
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-15 Score=132.02 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=131.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc------CCCE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV------KPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~------~~d~ 65 (302)
..+++|||||+|.||..+++.|+++|.+|++ +.+|++|.+++.+++++. .+|+
T Consensus 212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~ 291 (454)
T 3u0b_A 212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI 291 (454)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence 3468999999999999999999999999876 578999999888777643 4999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
|||+|+...... ......++...+++|+.++.++.+++... ..++|++||...+.+.
T Consensus 292 lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~----------------- 354 (454)
T 3u0b_A 292 LVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGN----------------- 354 (454)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCC-----------------
T ss_pred EEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCC-----------------
Confidence 999999763111 12344577889999999999999999864 2369999997654322
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC----c----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN----V----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~----~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
+....|+.+|...+.+.+.+.. . ..+.|+++..+............... ......+...+|+|+++..
T Consensus 355 -~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~---~~~l~r~g~pedvA~~v~f 430 (454)
T 3u0b_A 355 -RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLATREVGRR---LNSLFQGGQPVDVAELIAY 430 (454)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC----------CHHHHH---SBTTSSCBCHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhhHHHHHh---hccccCCCCHHHHHHHHHH
Confidence 2347899999987777665432 1 55677776543211100000000000 0112234578999999999
Q ss_pred HHhcC----CCCeEEecCCC
Q 022112 212 MAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 212 ~~~~~----~~~~~~~~~~~ 227 (302)
++... .+.++++.++.
T Consensus 431 L~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 431 FASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp HHCGGGTTCCSCEEEESSSB
T ss_pred HhCCccCCCCCcEEEECCcc
Confidence 88642 23478887754
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-15 Score=126.93 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=106.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhc--
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAV-- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~-- 61 (302)
.+++|||||+|+||++++++|+++|++|+. +.+|++|.+++.++++..
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 358999999999999999999999987544 347889999998888753
Q ss_pred -CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHH----HHhC-CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVC----RDKG-LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~----~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
++|+|||+||....... .....++...+++|+.++.++++++ ++.+ .++|++||...+...
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~------------ 149 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL------------ 149 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC------------
Confidence 59999999996521111 2244577889999999999999986 3334 369999997654311
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCC
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISS 174 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~ 174 (302)
+....|+.+|...+.+.+.+... ..++|+++..+
T Consensus 150 ------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~ 191 (327)
T 1jtv_A 150 ------PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (327)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ------CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccCh
Confidence 23368999999999988765321 66777777554
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-15 Score=121.43 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=132.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||++.||+.+++.|+++|.+|++ +.+|++|++++++++++. ++|
T Consensus 9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 88 (255)
T 4g81_D 9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVD 88 (255)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCc
Confidence 568999999999999999999999999887 678999999988777643 799
Q ss_pred EEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+||...... .+...+++...+++|+.++..+.+++.+ . +.++|++||...+...
T Consensus 89 iLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~--------------- 153 (255)
T 4g81_D 89 ILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR--------------- 153 (255)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC---------------
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC---------------
Confidence 9999999764221 2234568889999999999888877633 2 3469999997644321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccc-----cc-cCCcccHhhHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVV-----NI-PNSMTILDELLPI 208 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~-----~~-~~~~i~v~D~a~~ 208 (302)
+....|+.+|.....+.+.++.. ..+|+..|...... ..+........... .. ..-+...+|+|.+
T Consensus 154 ---~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~--T~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~ 228 (255)
T 4g81_D 154 ---PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYIL--TDMNTALIEDKQFDSWVKSSTPSQRWGRPEELIGT 228 (255)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--CGGGHHHHTCHHHHHHHHHHSTTCSCBCGGGGHHH
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCC--CchhhcccCCHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 23368999999999988776433 45666554332211 11222221111100 00 1224567999999
Q ss_pred HHHHHhcC----CCCeEEecCC
Q 022112 209 SIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~ 226 (302)
++.++... .+..+.+.+|
T Consensus 229 v~fL~S~~a~~iTG~~i~VDGG 250 (255)
T 4g81_D 229 AIFLSSKASDYINGQIIYVDGG 250 (255)
T ss_dssp HHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHhCchhCCCcCCEEEECCC
Confidence 99988642 2347777765
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-14 Score=118.29 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=133.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
.+.+|||||++.||+.+++.|+++|..|++ +.+|++|++++++++++. ++|+
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iDi 86 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLDG 86 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 468999999999999999999999998877 788999998887766543 8999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
+||+||....+..+...+++...+++|+.++..+.+++.. .+-++|++||...+.+. +
T Consensus 87 LVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~~~------------------~ 148 (258)
T 4gkb_A 87 LVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVTGQ------------------G 148 (258)
T ss_dssp EEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHHCC------------------S
T ss_pred EEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhccCC------------------C
Confidence 9999997643334445668889999999999888877643 35679999997654321 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc------------hhhHHHHhcccccccccCCcccHhhHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP------------RNFITKITRYEKVVNIPNSMTILDELL 206 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~i~v~D~a 206 (302)
....|+.+|.....+.+.++.. ..+|...+.......+ ......+.... ...+-+...+|+|
T Consensus 149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---plg~R~g~peeiA 225 (258)
T 4gkb_A 149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKV---PLGRRFTTPDEIA 225 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTC---TTTTSCBCHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcC---CCCCCCcCHHHHH
Confidence 3368999999999988775432 3444443332211000 11112221111 1112456789999
Q ss_pred HHHHHHHhcC----CCCeEEecCCC
Q 022112 207 PISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.+++.++... .+..+.+.+|.
T Consensus 226 ~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 226 DTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp HHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhCchhcCccCCeEEECCCc
Confidence 9999988642 23478887764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=118.77 Aligned_cols=195 Identities=12% Similarity=0.115 Sum_probs=132.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+.+.+|||||++.||+.+++.|+++|.+|++ +.+|++|++++++++++. ++
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 85 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI 85 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3568999999999999999999999999887 789999999988777543 89
Q ss_pred CEEEEccccCC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|++||+||... .+-.+...+++...+++|+.++..+.+++.+. +-++|++||...+-+
T Consensus 86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~--------------- 150 (254)
T 4fn4_A 86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRG--------------- 150 (254)
T ss_dssp CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCS---------------
T ss_pred CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCC---------------
Confidence 99999999652 11223345688899999999998888877542 346999999654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCC--------CCch-hhHHHHhcccccccccCCcccHhh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDL--------SNPR-NFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~--------~~~~-~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
.+....|+.+|.....+.+.++.. ..+|+..|..... ..+. .....+..... ...-+...+|
T Consensus 151 ---~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~---~~~R~g~ped 224 (254)
T 4fn4_A 151 ---GFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS---LSSRLAEPED 224 (254)
T ss_dssp ---SSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT---TCCCCBCHHH
T ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC---CCCCCcCHHH
Confidence 123368999999999888775433 3455544332211 0111 11222211111 1123456899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+|.+++.++... .+..+.+.+|-.
T Consensus 225 iA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 225 IANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 999999988642 234788777643
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-14 Score=123.59 Aligned_cols=194 Identities=14% Similarity=0.047 Sum_probs=122.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCCh-hhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENR-ASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~-~~~~~~~~~~----- 61 (302)
+++++|||||+|+||++++++|+++|++|++ +.+|+++. +++..+++..
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g 90 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFG 90 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence 3468999999999999999999999999887 56899997 7776665533
Q ss_pred CCCEEEEccccCCCC-------------------------------CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----
Q 022112 62 KPTHVFNAAGVTGRP-------------------------------NVDWCESHKVETIRTNVVGTLTLADVCRDK---- 106 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~-------------------------------~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---- 106 (302)
++|+|||+||....+ ............+++|+.++.++++++...
T Consensus 91 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~ 170 (311)
T 3o26_A 91 KLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLS 170 (311)
T ss_dssp SCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhccC
Confidence 899999999975210 001123456678999999999998887542
Q ss_pred -CCeEEEEcCCccccCCCCCC-----------CC---------------CCCCCCCCCCCCCCCCchhhhHHHHHHHHHh
Q 022112 107 -GLILINYATGCIFEYDSGHP-----------LG---------------SGIGFKEEDTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 107 -~~~~v~~SS~~vy~~~~~~~-----------~~---------------~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
+.++|++||...+....... .. .... .+.....+....|+.+|...+.+++.
T Consensus 171 ~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Y~~SK~a~~~~~~~ 249 (311)
T 3o26_A 171 DSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENL-IETNGWPSFGAAYTTSKACLNAYTRV 249 (311)
T ss_dssp SSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTC-TTTTTCCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccc-cccccCcccchhhHHHHHHHHHHHHH
Confidence 34799999976443210000 00 0000 01111112336799999999999877
Q ss_pred hcCc------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---CCCeEEecC
Q 022112 160 FENV------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---LTGIWNFTN 225 (302)
Q Consensus 160 ~~~~------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~~~~~~~ 225 (302)
++.. ..+.|+++..+ +. . .......++.++.++.++..+ .++.|...+
T Consensus 250 la~e~~~i~v~~v~PG~v~T~-------~~----~-------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~s 306 (311)
T 3o26_A 250 LANKIPKFQVNCVCPGLVKTE-------MN----Y-------GIGNYTAEEGAEHVVRIALFPDDGPSGFFYDCS 306 (311)
T ss_dssp HHHHCTTSEEEEECCCSBCSG-------GG----T-------TCCSBCHHHHHHHHHHHHTCCSSCCCSCEETC-
T ss_pred HHhhcCCceEEEecCCceecC-------Cc----C-------CCCCCCHHHHHHHHHHHHhCCCCCCCceEeccc
Confidence 5432 33344443221 10 0 012246788999888877643 345555554
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=125.29 Aligned_cols=193 Identities=12% Similarity=-0.038 Sum_probs=128.3
Q ss_pred ccEEEEEcCC--cchHHHHHHHHHhCCCcEEEeec--------------------------------------------C
Q 022112 14 PLKFLIYGRT--GWIGGLLGKLCQAQSIDFTYGSG--------------------------------------------R 47 (302)
Q Consensus 14 ~~~ilItGat--G~iG~~l~~~L~~~g~~V~~~~~--------------------------------------------d 47 (302)
++++|||||+ |+||+++++.|+++|++|++... |
T Consensus 8 ~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 87 (297)
T 1d7o_A 8 GKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPED 87 (297)
T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGGG
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccchhh
Confidence 4589999999 99999999999999999887520 1
Q ss_pred CCC------------hhhHHHHHhhc-----CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-
Q 022112 48 LEN------------RASLEADIAAV-----KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK- 106 (302)
Q Consensus 48 l~~------------~~~~~~~~~~~-----~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~- 106 (302)
+.+ .+++.+++++. ++|++||+||... .+.......++...+++|+.++.++++++...
T Consensus 88 v~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m 167 (297)
T 1d7o_A 88 VPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIM 167 (297)
T ss_dssp SCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 23444444322 7899999998531 11122345677889999999999999999764
Q ss_pred --CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHhhcC---------ceEEeeecccCC
Q 022112 107 --GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG-SFYSKTKAMVEELLKNFEN---------VCTLRVRMPISS 174 (302)
Q Consensus 107 --~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~-~~Y~~~K~~~E~~~~~~~~---------~~~lR~~~v~g~ 174 (302)
+.++|++||...+... +.. ..|+.+|...+.+.+.++. ...++|+++..+
T Consensus 168 ~~~g~iv~isS~~~~~~~------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~ 229 (297)
T 1d7o_A 168 NPGGASISLTYIASERII------------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229 (297)
T ss_dssp EEEEEEEEEECGGGTSCC------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCC
T ss_pred ccCceEEEEeccccccCC------------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccc
Confidence 3468999987654311 122 4899999999988765421 156788887765
Q ss_pred CCCCc---hhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 175 DLSNP---RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 175 ~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
..... ..+...+....+ ...+...+|+|++++.++... .+..+++.++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~p----~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~~ 286 (297)
T 1d7o_A 230 AAKAIGFIDTMIEYSYNNAP----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLN 286 (297)
T ss_dssp CSSCCSHHHHHHHHHHHHSS----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred hhhhccccHHHHHHhhccCC----CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCce
Confidence 43211 122222222111 134568999999999988642 234888888743
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=125.10 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=125.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------------ecCCCChhhHHHHHhh---
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------------SGRLENRASLEADIAA--- 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------------~~dl~~~~~~~~~~~~--- 60 (302)
++++|||||+|+||+++++.|+++|++|++. .+|+.+.+++.++++.
T Consensus 9 gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~~ 88 (319)
T 1gz6_A 9 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTALD 88 (319)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999873 3577777766555442
Q ss_pred -c-CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCc-cccCCCCCCCCCCC
Q 022112 61 -V-KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGC-IFEYDSGHPLGSGI 131 (302)
Q Consensus 61 -~-~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~-vy~~~~~~~~~~~~ 131 (302)
. ++|+|||+||....+. ......++...+++|+.++.++++++. +.+ .++|++||.. .++.
T Consensus 89 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~---------- 158 (319)
T 1gz6_A 89 TFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN---------- 158 (319)
T ss_dssp HTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC----------
Confidence 2 7999999999763111 122445778899999999998888873 334 4699999864 3441
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHh
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+.+.+... ..++|+.+ . +. . ..+.. .....++..+
T Consensus 159 ---------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t-~~-~-~~~~~---------~~~~~~~~p~ 216 (319)
T 1gz6_A 159 ---------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-S-RM-T-ETVMP---------EDLVEALKPE 216 (319)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-S-TT-T-GGGSC---------HHHHHHSCGG
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-c-cc-c-cccCC---------hhhhccCCHH
Confidence 12378999999999887665322 55666654 1 11 0 00000 0011245789
Q ss_pred hHHHHHHHHHhcC---CCCeEEecCCC
Q 022112 204 ELLPISIEMAKRN---LTGIWNFTNPG 227 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~~~~~~~~~~ 227 (302)
|+|.+++.++..+ .+..|++.++.
T Consensus 217 dvA~~~~~l~s~~~~~tG~~~~v~GG~ 243 (319)
T 1gz6_A 217 YVAPLVLWLCHESCEENGGLFEVGAGW 243 (319)
T ss_dssp GTHHHHHHHTSTTCCCCSCEEEEETTE
T ss_pred HHHHHHHHHhCchhhcCCCEEEECCCe
Confidence 9999999988653 23477787763
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=121.47 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=125.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh---CCCcEEE--------------------------eecCCCChhhHHHHHhhc---
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA---QSIDFTY--------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~---~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
++++|||||+|+||+++++.|++ +|++|++ +.+|++|++++.++++..
T Consensus 6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (259)
T 1oaa_A 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVREL 85 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHS
T ss_pred CcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8998876 347999999888777543
Q ss_pred ----CCC--EEEEccccCCC---CCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh------C-CeEEEEcCCccccCCCC
Q 022112 62 ----KPT--HVFNAAGVTGR---PNVD-WCESHKVETIRTNVVGTLTLADVCRDK------G-LILINYATGCIFEYDSG 124 (302)
Q Consensus 62 ----~~d--~Vi~~a~~~~~---~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~------~-~~~v~~SS~~vy~~~~~ 124 (302)
++| ++||+||.... +..+ ....++...+++|+.++.++++++... + .++|++||...+.+.
T Consensus 86 ~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 163 (259)
T 1oaa_A 86 PRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY-- 163 (259)
T ss_dssp CCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC--
T ss_pred cccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCC--
Confidence 468 99999997521 0111 244678889999999999999998653 1 359999997765421
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc-eEEeeecccCCCCCCchhhHHHHhc---ccc----cc--c
Q 022112 125 HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV-CTLRVRMPISSDLSNPRNFITKITR---YEK----VV--N 194 (302)
Q Consensus 125 ~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~-~~lR~~~v~g~~~~~~~~~~~~~~~---~~~----~~--~ 194 (302)
+....|+.+|...+.+.+.+... ..+|+..+..+.. ...+...+.. ... .. .
T Consensus 164 ----------------~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~ 225 (259)
T 1oaa_A 164 ----------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPL--DNDMQQLARETSKDPELRSKLQKLK 225 (259)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSB--SSHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred ----------------CCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCc--CcchHHHHhhccCChhHHHHHHHhh
Confidence 23478999999999988765322 1166655543221 1223222211 000 00 0
Q ss_pred ccCCcccHhhHHHHHHHHHhc
Q 022112 195 IPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 195 ~~~~~i~v~D~a~~~~~~~~~ 215 (302)
....+...+|+|++++.++..
T Consensus 226 p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 226 SDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HTTCSBCHHHHHHHHHHHHHH
T ss_pred hcCCcCCHHHHHHHHHHHHhh
Confidence 124577899999999998874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-14 Score=118.03 Aligned_cols=192 Identities=16% Similarity=0.077 Sum_probs=132.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+.+|||||++.||+.+++.|++.|.+|++ +.+|++|++++++++++. ++|++|
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV 108 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVLF 108 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 357999999999999999999999999887 789999999988776643 799999
Q ss_pred EccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 68 ~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
++||... .+..+...+++...+++|+.++..+.+++... +-++|++||...+.+ .|..
T Consensus 109 NNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~------------------~~~~ 170 (273)
T 4fgs_A 109 VNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTG------------------TPAF 170 (273)
T ss_dssp ECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSC------------------CTTC
T ss_pred ECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccC------------------CCCc
Confidence 9999763 12223355688999999999999999988654 235889988654331 1233
Q ss_pred CchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc-------------hhhHHHHhcccccccccCCcccHhhHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP-------------RNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
..|+.+|.....+.+.++.. ..+|+..|.......+ ..+...+....+ ..-+...+|+|.
T Consensus 171 ~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~P----lgR~g~peeiA~ 246 (273)
T 4fgs_A 171 SVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVP----MGRVGRAEEVAA 246 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHST----TSSCBCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCC----CCCCcCHHHHHH
Confidence 68999999999988775432 4556554433211000 011111111111 122456899999
Q ss_pred HHHHHHhcC----CCCeEEecCCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+++.++... .+..+.+.+|.
T Consensus 247 ~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 247 AALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHhCchhcCccCCeEeECcCh
Confidence 999988642 23477776653
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-14 Score=116.01 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=130.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~ 74 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++..+++.. ++|++||+||...
T Consensus 11 GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~~~ 90 (261)
T 4h15_A 11 GKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHMLGGSS 90 (261)
T ss_dssp TCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECCCCCC
T ss_pred CCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCc
Confidence 468999999999999999999999999987 788999999887766543 7999999998642
Q ss_pred C---CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 022112 75 R---PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFY 146 (302)
Q Consensus 75 ~---~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y 146 (302)
. +..+...+++...+++|+.++..+.+++.. .+ .++|++||...+-+. + .....|
T Consensus 91 ~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~----------------~-~~~~~Y 153 (261)
T 4h15_A 91 AAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL----------------P-ESTTAY 153 (261)
T ss_dssp CCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----------------T-TTCHHH
T ss_pred cCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC----------------C-CccHHH
Confidence 1 111234567888999999999888877643 33 468999886543211 1 123679
Q ss_pred hhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch--hhHHHHhccc--c------cc-----cc-cCCcccHhhHHH
Q 022112 147 SKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR--NFITKITRYE--K------VV-----NI-PNSMTILDELLP 207 (302)
Q Consensus 147 ~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~--~~~~~~~~~~--~------~~-----~~-~~~~i~v~D~a~ 207 (302)
+.+|...+.+.+.++.. ..+|+..+.......+. .+........ . .. .. ..-+...+|+|.
T Consensus 154 ~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~ 233 (261)
T 4h15_A 154 AAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVAN 233 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHH
Confidence 99999999988776433 45666665443211111 1111111100 0 00 00 122557899999
Q ss_pred HHHHHHhcC----CCCeEEecCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~ 226 (302)
+++.++... .+..+.+.+|
T Consensus 234 ~v~fLaS~~a~~itG~~i~VDGG 256 (261)
T 4h15_A 234 LIAFLASDRAASITGAEYTIDGG 256 (261)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHhCchhcCccCcEEEECCc
Confidence 999988642 2347777765
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=121.89 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=118.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh------cCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA------VKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~------~~~ 63 (302)
++++|||||+|+||+++++.|+++|++|++ +.+|++|.+++.++++. .++
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~i 84 (260)
T 2qq5_A 5 GQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRL 84 (260)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 468999999999999999999999999876 56799999888776653 268
Q ss_pred CEEEEcccc--C------CCCCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCC
Q 022112 64 THVFNAAGV--T------GRPNVDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSG 130 (302)
Q Consensus 64 d~Vi~~a~~--~------~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~ 130 (302)
|++||+||. . ..+.......++...+++|+.++.++.+++. +.+ .++|++||...+...
T Consensus 85 d~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 156 (260)
T 2qq5_A 85 DVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYM-------- 156 (260)
T ss_dssp CEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSCC--------
T ss_pred eEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCCC--------
Confidence 999999942 1 1111122345677888999998877766654 333 469999997654311
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC--------ceEEeeecccCCCCCCchhhHHH-Hhccccccc---c-cC
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN--------VCTLRVRMPISSDLSNPRNFITK-ITRYEKVVN---I-PN 197 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~--------~~~lR~~~v~g~~~~~~~~~~~~-~~~~~~~~~---~-~~ 197 (302)
+...|+.+|...+.+.+.++. ...++|+++..+... ..... -........ . ..
T Consensus 157 -----------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~---~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T 2qq5_A 157 -----------FNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLK---EHMAKEEVLQDPVLKQFKSAFS 222 (260)
T ss_dssp -----------SSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------C
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHH---HhhccccccchhHHHHHHhhhc
Confidence 226899999999998876532 166777777554211 10000 000000000 0 11
Q ss_pred CcccHhhHHHHHHHHHhcC
Q 022112 198 SMTILDELLPISIEMAKRN 216 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~ 216 (302)
-+...+|+|++++.++...
T Consensus 223 ~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 223 SAETTELSGKCVVALATDP 241 (260)
T ss_dssp HHHHHHHHHHHHHHHHTCT
T ss_pred cCCCHHHHHHHHHHHhcCc
Confidence 1346899999999988753
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=116.41 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=132.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.+++|||||++.||+.+++.|++.|.+|++ +.+|++|++++++.++..++|++||+||
T Consensus 9 GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNAG 88 (247)
T 4hp8_A 9 GRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNAG 88 (247)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECCC
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECCC
Confidence 568999999999999999999999999887 6788888888887777778999999999
Q ss_pred cCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 72 ~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
.... +..+....+++..+++|+.++..+.+++.+ .+ -++|.+||...+.+ .+...
T Consensus 89 i~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g------------------~~~~~ 150 (247)
T 4hp8_A 89 IIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQG------------------GIRVP 150 (247)
T ss_dssp CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------------CSSCH
T ss_pred CCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCC------------------CCCCh
Confidence 7642 122234568899999999999988887543 22 46999999654321 12336
Q ss_pred chhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc----cc-cc-cCCcccHhhHHHHHHHHHhc
Q 022112 145 FYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK----VV-NI-PNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~----~~-~~-~~~~i~v~D~a~~~~~~~~~ 215 (302)
.|+.+|.....+.+.++.. ..+|...|-..... ..+...+..... .. .. ..-+-..+|+|.+++.++..
T Consensus 151 ~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~--T~~~~~~~~~~~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd 228 (247)
T 4hp8_A 151 SYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIE--TNNTEALRADAARNKAILERIPAGRWGHSEDIAGAAVFLSSA 228 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC--SGGGHHHHTSHHHHHHHHTTCTTSSCBCTHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCC--CcchhhcccCHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCc
Confidence 8999999999988775433 45666554432211 112222211100 00 00 12245679999999998864
Q ss_pred C----CCCeEEecCC
Q 022112 216 N----LTGIWNFTNP 226 (302)
Q Consensus 216 ~----~~~~~~~~~~ 226 (302)
. .+..+.+.+|
T Consensus 229 ~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 229 AADYVHGAILNVDGG 243 (247)
T ss_dssp GGTTCCSCEEEESTT
T ss_pred hhcCCcCCeEEECcc
Confidence 2 2347777765
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=124.83 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=127.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEE---------------------------eecCCCChhhHHHHHhhc----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTY---------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~---------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
++++|||||+|.||.+++++|+++|. +|++ +.+|++|.+++..++++.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999998 4433 678999999999988753
Q ss_pred CCCEEEEccccC-C-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCcc-ccCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVT-G-RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCI-FEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 62 ~~d~Vi~~a~~~-~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~v-y~~~~~~~~~~~~~~~e~~ 137 (302)
.+|+|||+||.. . .+.......+....+++|+.++.++.+.++.... +||++||... +|.
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~---------------- 382 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGS---------------- 382 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTC----------------
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCC----------------
Confidence 589999999975 2 1112234456788999999999999999988765 4899988753 332
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcC----ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFEN----VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+....|+.+|...+.+.+.+.. ...+.++.+.+............+.+. ....+..++.++++..++
T Consensus 383 ---~g~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w~~~gm~~~~~~~~~l~~~------g~~~l~pe~~~~~l~~~l 453 (496)
T 3mje_A 383 ---GGQPGYAAANAYLDALAEHRRSLGLTASSVAWGTWGEVGMATDPEVHDRLVRQ------GVLAMEPEHALGALDQML 453 (496)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEESSSCC------CHHHHHT------TEEEECHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHhcCCeEEEEECCcccCCccccChHHHHHHHhc------CCCCCCHHHHHHHHHHHH
Confidence 2347899999999998866532 267777766554321111111122111 112346789999999988
Q ss_pred hcCCC
Q 022112 214 KRNLT 218 (302)
Q Consensus 214 ~~~~~ 218 (302)
..+..
T Consensus 454 ~~~~~ 458 (496)
T 3mje_A 454 ENDDT 458 (496)
T ss_dssp HHTCS
T ss_pred cCCCc
Confidence 86543
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.4e-13 Score=110.40 Aligned_cols=191 Identities=8% Similarity=-0.028 Sum_probs=127.1
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
.+++|||||+| -||..+++.|+++|.+|++ +.+|+++++++.+.+++.
T Consensus 6 gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (256)
T 4fs3_A 6 NKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVG 85 (256)
T ss_dssp TCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46899999886 8999999999999999887 678999999887776543
Q ss_pred CCCEEEEccccCCCCC-----cchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPN-----VDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+|+...... .+....++...+++|+.++..+.+.+... +-++|++||....-
T Consensus 86 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~------------- 152 (256)
T 4fs3_A 86 NIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF------------- 152 (256)
T ss_dssp CCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS-------------
T ss_pred CCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc-------------
Confidence 7999999999652100 11122345567788999888888877654 33699999865322
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCC--------CchhhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLS--------NPRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..|...... ....+...+....+ ..-+...
T Consensus 153 -----~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~P----l~R~g~p 223 (256)
T 4fs3_A 153 -----AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAP----LKRNVDQ 223 (256)
T ss_dssp -----CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHST----TSSCCCH
T ss_pred -----CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCC----CCCCcCH
Confidence 1123478999999999988775433 34555444332111 11223333322211 1224568
Q ss_pred hhHHHHHHHHHhcC----CCCeEEecCC
Q 022112 203 DELLPISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 203 ~D~a~~~~~~~~~~----~~~~~~~~~~ 226 (302)
+|+|.+++.++... .+.++.+.+|
T Consensus 224 eevA~~v~fL~Sd~a~~iTG~~i~VDGG 251 (256)
T 4fs3_A 224 VEVGKTAAYLLSDLSSGVTGENIHVDSG 251 (256)
T ss_dssp HHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHHHHHhCchhcCccCCEEEECcC
Confidence 99999999988642 2347777766
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=118.75 Aligned_cols=200 Identities=9% Similarity=-0.013 Sum_probs=136.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEE--------------------------------------eecCCCChhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTY--------------------------------------GSGRLENRAS 53 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~--------------------------------------~~~dl~~~~~ 53 (302)
..+++|||||+|.||.+++++|+++|.. |++ +.+|++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 4568999999999999999999999977 222 4578899999
Q ss_pred HHHHHhhc----CCCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-----C-eEEEEcCCccccCC
Q 022112 54 LEADIAAV----KPTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDKG-----L-ILINYATGCIFEYD 122 (302)
Q Consensus 54 ~~~~~~~~----~~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-----~-~~v~~SS~~vy~~~ 122 (302)
+..+++.. .+|+|||+||..... .......+....+++|+.++.++.+++.... . +||++||...+-+.
T Consensus 330 v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g~ 409 (525)
T 3qp9_A 330 AARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWGG 409 (525)
T ss_dssp HHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTCC
T ss_pred HHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCCC
Confidence 99888754 579999999976311 1123445678899999999999999998764 3 58999987643211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCCchhhHHHHhcccccccccCC
Q 022112 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNS 198 (302)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (302)
+....|+.+|...+.+.+.+... ..+.++.+ ..+..........+.+ ....
T Consensus 410 ------------------~g~~~YaaaKa~l~~lA~~~~~~gi~v~sI~pG~~-~tgm~~~~~~~~~~~~------~g~~ 464 (525)
T 3qp9_A 410 ------------------AGQGAYAAGTAFLDALAGQHRADGPTVTSVAWSPW-EGSRVTEGATGERLRR------LGLR 464 (525)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHTSCCSSCCEEEEEEECCB-TTSGGGSSHHHHHHHH------TTBC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcc-ccccccchhhHHHHHh------cCCC
Confidence 23478999999999988766443 45566555 2211001111111111 1224
Q ss_pred cccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhh
Q 022112 199 MTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQY 241 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~ 241 (302)
.+..++.++++..++..+...+... .+.|..+...+...
T Consensus 465 ~l~pee~a~~l~~~l~~~~~~v~v~----~~dw~~~~~~~~~~ 503 (525)
T 3qp9_A 465 PLAPATALTALDTALGHGDTAVTIA----DVDWSSFAPGFTTA 503 (525)
T ss_dssp CBCHHHHHHHHHHHHHHTCSEEEEC----CBCHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEE----eCCHHHHHhhcccc
Confidence 5678999999999998765443322 34566666555443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-13 Score=113.32 Aligned_cols=194 Identities=10% Similarity=-0.031 Sum_probs=120.6
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEEeec------------------------------------CC-------
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTYGSG------------------------------------RL------- 48 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~~------------------------------------dl------- 48 (302)
++++||||| +|+||+++++.|+++|++|++... |+
T Consensus 9 gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (315)
T 2o2s_A 9 GQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPED 88 (315)
T ss_dssp TCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSSTTS
T ss_pred CCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccccch
Confidence 358999999 899999999999999999887531 10
Q ss_pred -----C--------ChhhHHHHHhhc-----CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-
Q 022112 49 -----E--------NRASLEADIAAV-----KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK- 106 (302)
Q Consensus 49 -----~--------~~~~~~~~~~~~-----~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~- 106 (302)
+ |.+++..++++. ++|++||+||... .+..+....++...+++|+.++.++++++...
T Consensus 89 ~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m 168 (315)
T 2o2s_A 89 VPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPIM 168 (315)
T ss_dssp SCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTTE
T ss_pred hhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 0 123444444432 7999999999541 11122344577889999999999999999754
Q ss_pred --CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCCc
Q 022112 107 --GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG-SFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSNP 179 (302)
Q Consensus 107 --~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~~ 179 (302)
+.++|++||...+... +.. ..|+.+|...+.+.+.++.. ..+|+..+..+.. .
T Consensus 169 ~~~g~Iv~isS~~~~~~~------------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v--~ 228 (315)
T 2o2s_A 169 NEGGSAVTLSYLAAERVV------------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPL--K 228 (315)
T ss_dssp EEEEEEEEEEEGGGTSCC------------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCC--C
T ss_pred hcCCEEEEEecccccccC------------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccc--c
Confidence 3468999987654311 122 47999999999887654321 2344333322211 0
Q ss_pred hhhHHHHh------------cccccccccCCcccHhhHHHHHHHHHhcC---C-CCeEEecCCC
Q 022112 180 RNFITKIT------------RYEKVVNIPNSMTILDELLPISIEMAKRN---L-TGIWNFTNPG 227 (302)
Q Consensus 180 ~~~~~~~~------------~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~ 227 (302)
..+...+. ..........-+...+|+|++++.++... . +..+.+.++.
T Consensus 229 T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 292 (315)
T 2o2s_A 229 SRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGL 292 (315)
T ss_dssp CHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred chhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCe
Confidence 11111111 00000001123567899999999988642 2 3477777764
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=112.17 Aligned_cols=197 Identities=11% Similarity=-0.014 Sum_probs=108.4
Q ss_pred ccEEEEEcC--CcchHHHHHHHHHhCCCcEEEeec---------------------------------------------
Q 022112 14 PLKFLIYGR--TGWIGGLLGKLCQAQSIDFTYGSG--------------------------------------------- 46 (302)
Q Consensus 14 ~~~ilItGa--tG~iG~~l~~~L~~~g~~V~~~~~--------------------------------------------- 46 (302)
++++||||| +|+||+++++.|+++|++|++...
T Consensus 9 ~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (319)
T 2ptg_A 9 GKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVFDK 88 (319)
T ss_dssp TCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CCSE
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccccc
Confidence 357999999 899999999999999999887531
Q ss_pred ----C--CCC------------------hhhHHHHHhhc-----CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHH
Q 022112 47 ----R--LEN------------------RASLEADIAAV-----KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVV 94 (302)
Q Consensus 47 ----d--l~~------------------~~~~~~~~~~~-----~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~ 94 (302)
| +++ .+++..++++. ++|++||+||... .+.......++...+++|+.
T Consensus 89 ~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~ 168 (319)
T 2ptg_A 89 IYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSSY 168 (319)
T ss_dssp EEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHTH
T ss_pred cccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHhhH
Confidence 1 011 12444444322 7899999998541 11122345577889999999
Q ss_pred HHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC-CchhhhHHHHHHHHHhhcCc-------
Q 022112 95 GTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG-SFYSKTKAMVEELLKNFENV------- 163 (302)
Q Consensus 95 ~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~-~~Y~~~K~~~E~~~~~~~~~------- 163 (302)
++.++++++... +.++|++||...+... +.. ..|+.+|...+.+.+.++..
T Consensus 169 g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------------~~~~~~Y~asKaal~~l~~~la~el~~~~gI 230 (319)
T 2ptg_A 169 SFVSLLQHFLPLMKEGGSALALSYIASEKVI------------------PGYGGGMSSAKAALESDCRTLAFEAGRARAV 230 (319)
T ss_dssp HHHHHHHHHGGGEEEEEEEEEEEECC------------------------------------THHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCceEEEEecccccccc------------------CccchhhHHHHHHHHHHHHHHHHHhccccCe
Confidence 999999999764 3468999987643311 122 47999999888877654221
Q ss_pred --eEEeeecccCCCCCCch-----hhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---C-CCeEEecCCCc
Q 022112 164 --CTLRVRMPISSDLSNPR-----NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---L-TGIWNFTNPGV 228 (302)
Q Consensus 164 --~~lR~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~~~ 228 (302)
..++|+++..+...... .+...+...........-+...+|+|++++.++... . +..+.+.++..
T Consensus 231 rvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~~ 306 (319)
T 2ptg_A 231 RVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNGLH 306 (319)
T ss_dssp EEEEEEECCCC-------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTCT
T ss_pred eEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCCce
Confidence 44555554332110000 000000000000000123567899999999988642 2 34788877643
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=124.14 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=122.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe------------------------------ecCCCChhhHHHHHhhc-
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG------------------------------SGRLENRASLEADIAAV- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~------------------------------~~dl~~~~~~~~~~~~~- 61 (302)
.++++|||||+|.||+++++.|+++|++|++. .+|+++.+++.++++..
T Consensus 18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~ 97 (613)
T 3oml_A 18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI 97 (613)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999873 35677777776666543
Q ss_pred ----CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCC
Q 022112 62 ----KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGI 131 (302)
Q Consensus 62 ----~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~ 131 (302)
++|++||+||...... ......++...+++|+.++.++++++. +.+ .++|++||...+-+.
T Consensus 98 ~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~--------- 168 (613)
T 3oml_A 98 KAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGN--------- 168 (613)
T ss_dssp -------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCC---------
T ss_pred HHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC---------
Confidence 6899999999763111 123456788999999999999999883 333 469999987543311
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 132 GFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 132 ~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
+....|+.+|...+.+.+.++.. ..+|+..+.... ...+..... .......+..+|+|.+
T Consensus 169 ---------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~-------~t~~~~~~~-~~~~~~~~~pedvA~~ 231 (613)
T 3oml_A 169 ---------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTA-------ASRMTEGIL-PDILFNELKPKLIAPV 231 (613)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------CCCC-CHHHHTTCCGGGTHHH
T ss_pred ---------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCC-------CChhhhhcc-chhhhhcCCHHHHHHH
Confidence 13378999999999988776433 345554443211 111111110 0111234578999999
Q ss_pred HHHHHhcC---CCCeEEecCC
Q 022112 209 SIEMAKRN---LTGIWNFTNP 226 (302)
Q Consensus 209 ~~~~~~~~---~~~~~~~~~~ 226 (302)
++.++... .+.++++.+|
T Consensus 232 v~~L~s~~~~~tG~~i~vdGG 252 (613)
T 3oml_A 232 VAYLCHESCEDNGSYIESAAG 252 (613)
T ss_dssp HHHTTSTTCCCCSCEEEEETT
T ss_pred HHHhcCCCcCCCceEEEECCC
Confidence 99887653 2346666554
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-12 Score=108.45 Aligned_cols=129 Identities=9% Similarity=-0.011 Sum_probs=93.5
Q ss_pred ccEEEEEcCCc--chHHHHHHHHHhCCCcEEE------------------------------------eecCCCCh--h-
Q 022112 14 PLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY------------------------------------GSGRLENR--A- 52 (302)
Q Consensus 14 ~~~ilItGatG--~iG~~l~~~L~~~g~~V~~------------------------------------~~~dl~~~--~- 52 (302)
.+++|||||++ .||.+++++|+++|++|++ +.+|+++. +
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~ 81 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND 81 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence 35899999875 9999999999999999982 33445544 4
Q ss_pred -----------------hHHHHHhhc-----CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-
Q 022112 53 -----------------SLEADIAAV-----KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK- 106 (302)
Q Consensus 53 -----------------~~~~~~~~~-----~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~- 106 (302)
++.++++.. ++|++||+||... .+.......++...+++|+.++..+.+++...
T Consensus 82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m 161 (329)
T 3lt0_A 82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM 161 (329)
T ss_dssp CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 666555432 7899999999631 11122345577889999999999999998764
Q ss_pred --CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC-chhhhHHHHHHHHHhh
Q 022112 107 --GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS-FYSKTKAMVEELLKNF 160 (302)
Q Consensus 107 --~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~-~Y~~~K~~~E~~~~~~ 160 (302)
+.++|++||...+.. .+... .|+.+|...+.+.+.+
T Consensus 162 ~~~g~Iv~isS~~~~~~------------------~~~~~~~Y~asKaal~~~~~~l 200 (329)
T 3lt0_A 162 KPQSSIISLTYHASQKV------------------VPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp EEEEEEEEEECGGGTSC------------------CTTCTTTHHHHHHHHHHHHHHH
T ss_pred hhCCeEEEEeCccccCC------------------CCcchHHHHHHHHHHHHHHHHH
Confidence 236899998654331 12223 8999999999887654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=117.21 Aligned_cols=200 Identities=11% Similarity=0.035 Sum_probs=126.7
Q ss_pred ccEEEEEcCCcc-hHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhh---
Q 022112 14 PLKFLIYGRTGW-IGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAA--- 60 (302)
Q Consensus 14 ~~~ilItGatG~-iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~--- 60 (302)
++++|||||+|. ||.++++.|+++|++|++ +.+|++|.+++..+++.
T Consensus 652 gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i~~ 731 (1878)
T 2uv9_A 652 GKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYIYD 731 (1878)
T ss_dssp TCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357999999999 999999999999998776 34688998888877753
Q ss_pred ----c--CCCEEEEccccCCCC-C-cchh--hhhHHHHHHHhHHHHHHHHHHHHHh------C-CeEEEEcCCccccCCC
Q 022112 61 ----V--KPTHVFNAAGVTGRP-N-VDWC--ESHKVETIRTNVVGTLTLADVCRDK------G-LILINYATGCIFEYDS 123 (302)
Q Consensus 61 ----~--~~d~Vi~~a~~~~~~-~-~~~~--~~~~~~~~~~n~~~~~~ll~~~~~~------~-~~~v~~SS~~vy~~~~ 123 (302)
+ ++|+|||+||..... . .... ..++...+++|+.++.++++.++.. + .++|++||...+-+
T Consensus 732 ~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g-- 809 (1878)
T 2uv9_A 732 TKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG-- 809 (1878)
T ss_dssp SSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS--
T ss_pred hhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC--
Confidence 2 589999999976311 1 1112 3567889999999999888774322 1 25888988643220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-----cCc---eEEeeecccCCCCCCchhhHHHHhcccccccc
Q 022112 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-----ENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNI 195 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-----~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
....|+.+|...+.+++.+ ... ..+.|+++.|.+...........+.. .
T Consensus 810 ------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~~~~~~~~~~~-----~ 866 (1878)
T 2uv9_A 810 ------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSANNLVAEGVEK-----L 866 (1878)
T ss_dssp ------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSHHHHTHHHHHT-----T
T ss_pred ------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcccccchhhHHHHHh-----c
Confidence 1268999999999876432 222 34555555422211111111111111 1
Q ss_pred cCCcccHhhHHHHHHHHHhcCC-----CCeEEe--cCCCc--cCHHHHHHHH
Q 022112 196 PNSMTILDELLPISIEMAKRNL-----TGIWNF--TNPGV--VSHNEILEMY 238 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~~~-----~~~~~~--~~~~~--~s~~e~~~~~ 238 (302)
..-+...+|+|.+++.++.... +..+.+ .+|.. ..+.++...+
T Consensus 867 plr~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 867 GVRTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp TCCCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCccccCCHHHHHHHH
Confidence 1123478999999998875432 345555 24422 4455555443
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-10 Score=117.00 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=126.6
Q ss_pred ccEEEEEcCCcc-hHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhh---
Q 022112 14 PLKFLIYGRTGW-IGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAA--- 60 (302)
Q Consensus 14 ~~~ilItGatG~-iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~--- 60 (302)
++++|||||+|. ||.++++.|+++|++|++ +.+|++|.+++..+++.
T Consensus 675 gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i~~ 754 (1887)
T 2uv8_A 675 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYD 754 (1887)
T ss_dssp TCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 357999999999 999999999999998876 34688998888777652
Q ss_pred ------c--CCCEEEEccccCCCC-Ccc-hh--hhhHHHHHHHhHHHHHHHHHHHHHhC-------CeEEEEcCCccccC
Q 022112 61 ------V--KPTHVFNAAGVTGRP-NVD-WC--ESHKVETIRTNVVGTLTLADVCRDKG-------LILINYATGCIFEY 121 (302)
Q Consensus 61 ------~--~~d~Vi~~a~~~~~~-~~~-~~--~~~~~~~~~~n~~~~~~ll~~~~~~~-------~~~v~~SS~~vy~~ 121 (302)
+ ++|++||+||..... ... .. .......+++|+.++..++++++... .++|++||...+.+
T Consensus 755 ~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~~g 834 (1887)
T 2uv8_A 755 TEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFG 834 (1887)
T ss_dssp CTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTCSS
T ss_pred hccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhccC
Confidence 2 489999999976311 111 12 45678899999999999999884331 25888988643221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH-HHhhcC----c---eEEeeecccCCCCCCchhhHHHHhcccccc
Q 022112 122 DSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL-LKNFEN----V---CTLRVRMPISSDLSNPRNFITKITRYEKVV 193 (302)
Q Consensus 122 ~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~-~~~~~~----~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~ 193 (302)
....|+.+|...+.+ .+.+.. . ..+.|+++.+.+..............
T Consensus 835 --------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~~~~~---- 890 (1887)
T 2uv8_A 835 --------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEK---- 890 (1887)
T ss_dssp --------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHHHHHT----
T ss_pred --------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHHHHHh----
Confidence 126899999999987 443322 2 34566666532211101111111111
Q ss_pred cccCCcccHhhHHHHHHHHHhcC-----CCCeEEe--cCCC--ccCHHHHHHH
Q 022112 194 NIPNSMTILDELLPISIEMAKRN-----LTGIWNF--TNPG--VVSHNEILEM 237 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~-----~~~~~~~--~~~~--~~s~~e~~~~ 237 (302)
...-+...+|+|.+++.++... .+..+.+ .+|. ...+.++...
T Consensus 891 -~plr~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~~~~~~l~el~~~ 942 (1887)
T 2uv8_A 891 -MGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKEFTAK 942 (1887)
T ss_dssp -TSCCCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCSTTTSSSHHHHHHH
T ss_pred -cCCCCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCeeccccHHHHHHH
Confidence 1112347899999999888643 2345555 2442 2345555443
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=117.37 Aligned_cols=181 Identities=12% Similarity=0.009 Sum_probs=114.9
Q ss_pred ccEEEEEcCCcc-hHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhh---
Q 022112 14 PLKFLIYGRTGW-IGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAA--- 60 (302)
Q Consensus 14 ~~~ilItGatG~-iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~--- 60 (302)
++++|||||+|. ||.++++.|+++|++|++ +.+|++|.+++..+++.
T Consensus 476 GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I~e 555 (1688)
T 2pff_A 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYD 555 (1688)
T ss_dssp SCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHHHS
T ss_pred CCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 357999999998 999999999999988876 34578888887777653
Q ss_pred ------c--CCCEEEEccccCCCC-C-cchh--hhhHHHHHHHhHHHHHHHHHHHHHh------C-CeEEEEcCCccccC
Q 022112 61 ------V--KPTHVFNAAGVTGRP-N-VDWC--ESHKVETIRTNVVGTLTLADVCRDK------G-LILINYATGCIFEY 121 (302)
Q Consensus 61 ------~--~~d~Vi~~a~~~~~~-~-~~~~--~~~~~~~~~~n~~~~~~ll~~~~~~------~-~~~v~~SS~~vy~~ 121 (302)
. ++|+|||+||..... . .... ..+....+++|+.++..++++++.. + .++|++||...+.+
T Consensus 556 ~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~~G 635 (1688)
T 2pff_A 556 TEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGTFG 635 (1688)
T ss_dssp CTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTTSS
T ss_pred hccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhccC
Confidence 2 489999999976311 1 1112 4567889999999999999988432 1 25888888543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH-HHhhcCc---eEEeeecccCCCCCCchhhHHHH-hccccccccc
Q 022112 122 DSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL-LKNFENV---CTLRVRMPISSDLSNPRNFITKI-TRYEKVVNIP 196 (302)
Q Consensus 122 ~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~-~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~-~~~~~~~~~~ 196 (302)
....|+.+|...+.+ .+..... . +|+..+..+..... .+.... ..........
T Consensus 636 --------------------g~saYaASKAAL~aLttrsLAeEla~~-IRVNaVaPG~V~TT-~M~~~~e~~~~~l~~ip 693 (1688)
T 2pff_A 636 --------------------GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGT-GLMSANNIIAEGIEKMG 693 (1688)
T ss_dssp --------------------CBTTHHHHHHHHTHHHHHTTTSSCTTT-EECCCCCCCCCCCC-SSSCTTTTCSTTTSSSS
T ss_pred --------------------CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEECcCcCC-cccCCchHHHHHHHhCC
Confidence 126899999999998 3433322 2 55444332211100 010000 0000000111
Q ss_pred CCcccHhhHHHHHHHHHhcC
Q 022112 197 NSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 197 ~~~i~v~D~a~~~~~~~~~~ 216 (302)
.-+...+|+|.+++.++...
T Consensus 694 lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 694 VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp CCCCCCCTTHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 12347899999999988654
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=107.99 Aligned_cols=187 Identities=15% Similarity=0.146 Sum_probs=117.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe----------------------ecCC-CChhh-HHHHHhhc-CCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----------------------SGRL-ENRAS-LEADIAAV-KPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~----------------------~~dl-~~~~~-~~~~~~~~-~~d~Vi~ 68 (302)
++.+|||||++.||+.+++.|+++|++|++. .+|+ .+.+. ++.+.+.+ ++|++||
T Consensus 322 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiLVn 401 (604)
T 2et6_A 322 DKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILVN 401 (604)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3579999999999999999999999998873 2233 22222 22222222 7999999
Q ss_pred ccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 69 AAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 69 ~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
+||.... +..+....++...+++|+.++.++.+++.. . +.++|++||...+-+ .+.
T Consensus 402 NAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~------------------~~~ 463 (604)
T 2et6_A 402 NAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYG------------------NFG 463 (604)
T ss_dssp CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSC------------------CTT
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC------------------CCC
Confidence 9997531 111234567889999999999988887743 2 246999998653321 123
Q ss_pred CCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---
Q 022112 143 GSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN--- 216 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~--- 216 (302)
...|+.+|.....+.+.++.. ..+|+..+... . ...+....... ........+|+|.+++.++...
T Consensus 464 ~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG-~--~T~m~~~~~~~-----~~~~~~~pe~vA~~v~~L~s~~~~i 535 (604)
T 2et6_A 464 QANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH-A--ETAMTLSIMRE-----QDKNLYHADQVAPLLVYLGTDDVPV 535 (604)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-C--CCCC--------------CCSSCGGGTHHHHHHTTSTTCCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCC-C--CCccccccCch-----hhccCCCHHHHHHHHHHHhCCccCC
Confidence 368999999999887765432 45565554432 1 11121111110 0123457899999999877542
Q ss_pred CCCeEEecCC
Q 022112 217 LTGIWNFTNP 226 (302)
Q Consensus 217 ~~~~~~~~~~ 226 (302)
.+.++.+.++
T Consensus 536 tG~~~~vdGG 545 (604)
T 2et6_A 536 TGETFEIGGG 545 (604)
T ss_dssp CSCEEEEETT
T ss_pred CCcEEEECCC
Confidence 2346776665
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-10 Score=103.72 Aligned_cols=204 Identities=9% Similarity=0.093 Sum_probs=130.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee------------------------------cCCCChhhHHHHH----h
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS------------------------------GRLENRASLEADI----A 59 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~------------------------------~dl~~~~~~~~~~----~ 59 (302)
++.+|||||++.||+.+++.|+++|++|++.. .|+.|.+++++++ +
T Consensus 8 gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~~ 87 (604)
T 2et6_A 8 DKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAVK 87 (604)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999988632 2344443333322 2
Q ss_pred hc-CCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCC
Q 022112 60 AV-KPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 60 ~~-~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
.+ ++|++||+||.... +..+....++...+++|+.++..+.+++.. .+ .++|++||...+-+.
T Consensus 88 ~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~---------- 157 (604)
T 2et6_A 88 NFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGN---------- 157 (604)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCC----------
Confidence 22 79999999997521 112234567889999999999888887743 23 469999886543211
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|.....+.+.++.. ..+|...+... . ...+...... .........+|+|.++
T Consensus 158 --------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~--~T~m~~~~~~-----~~~~~~~~pe~vA~~v 221 (604)
T 2et6_A 158 --------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-A--RSRMTESIMP-----PPMLEKLGPEKVAPLV 221 (604)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-C--CCHHHHTTSC-----HHHHTTCSHHHHHHHH
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-C--cCccccccCC-----hhhhccCCHHHHHHHH
Confidence 12368999999999988776433 45676665542 1 1222211110 0011234789999999
Q ss_pred HHHHhcC---CCCeEEecCC------------------CccCHHHHHHHHHhhcC
Q 022112 210 IEMAKRN---LTGIWNFTNP------------------GVVSHNEILEMYRQYID 243 (302)
Q Consensus 210 ~~~~~~~---~~~~~~~~~~------------------~~~s~~e~~~~~~~~~g 243 (302)
+.++... .+.++.+.++ ...+..++...+.+...
T Consensus 222 ~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 276 (604)
T 2et6_A 222 LYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEILD 276 (604)
T ss_dssp HHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHTC
T ss_pred HHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhhc
Confidence 9988653 2235555443 23566778777766543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=81.69 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=65.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
++|+|+|+|+ |++|+.+++.|.+.| ++|++ +.+|+.+.+.+.+.+. ++|+|||+++..
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~ 80 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF 80 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence 5679999999 999999999999999 88877 4667888888888887 899999998633
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
....++++|.+.+++++.+|+
T Consensus 81 ---------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 81 ---------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp ---------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred ---------------------hhHHHHHHHHHhCCCEEEecC
Confidence 124688899999988776665
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-10 Score=105.60 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=122.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHH-hCCCc-EEE---------------------------eecCCCChhhHHHHHhhc--
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQ-AQSID-FTY---------------------------GSGRLENRASLEADIAAV-- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~-~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~-- 61 (302)
+.+++|||||+|.||..+++.|. ++|.+ |++ +.+|++|.+++.+++++.
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 45689999999999999999999 78875 443 678999999999888754
Q ss_pred --CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 62 --KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 62 --~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
.+|+|||+|+...... ......++...+++|+.|+.++.+++.. ..+||++||.+.+-+.
T Consensus 609 ~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l~iV~~SS~ag~~g~---------------- 671 (795)
T 3slk_A 609 EHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DVALVLFSSVSGVLGS---------------- 671 (795)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TSEEEEEEETHHHHTC----------------
T ss_pred hCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CCEEEEEccHHhcCCC----------------
Confidence 6899999999763111 1223457788999999999999998843 3479999997643311
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc----eEEeeecccCCCCCCchhhHHHHhcc--cccccccCCcccHhhHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV----CTLRVRMPISSDLSNPRNFITKITRY--EKVVNIPNSMTILDELLPISIEM 212 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v~g~~~~~~~~~~~~~~~~--~~~~~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+.+.+... ..+-|+.+-.. .+...+... ..........+..++..+++..+
T Consensus 672 --~g~~~YaAaka~~~alA~~~~~~Gi~v~sI~pG~v~t~------g~~~~~~~~~~~~~~~~g~~~l~~~e~~~~~~~~ 743 (795)
T 3slk_A 672 --GGQGNYAAANSFLDALAQQRQSRGLPTRSLAWGPWAEH------GMASTLREAEQDRLARSGLLPISTEEGLSQFDAA 743 (795)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSCC------CHHHHHHHHHHHHHHHTTBCCCCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHcCCeEEEEECCeECcc------hhhccccHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 23478999999888887665432 44555544321 111111000 00111223446678888888888
Q ss_pred HhcCC
Q 022112 213 AKRNL 217 (302)
Q Consensus 213 ~~~~~ 217 (302)
+..+.
T Consensus 744 l~~~~ 748 (795)
T 3slk_A 744 CGGAH 748 (795)
T ss_dssp HTSSC
T ss_pred HhCCC
Confidence 87643
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-09 Score=90.39 Aligned_cols=145 Identities=12% Similarity=0.000 Sum_probs=98.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEE------------------------------------eecCCCChhhHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY------------------------------------GSGRLENRASLE 55 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~------------------------------------~~~dl~~~~~~~ 55 (302)
..+++|||||++.||.++++.|++ .|.+|++ +.+|+++.+++.
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v~ 125 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQ 125 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 356899999999999999999999 9988765 335777777766
Q ss_pred HHHhhc-----CCCEEEEccccCC--------------CCC---------------------cchhhhhHHHHHHHhHHH
Q 022112 56 ADIAAV-----KPTHVFNAAGVTG--------------RPN---------------------VDWCESHKVETIRTNVVG 95 (302)
Q Consensus 56 ~~~~~~-----~~d~Vi~~a~~~~--------------~~~---------------------~~~~~~~~~~~~~~n~~~ 95 (302)
++++.. ++|++||.||... .|- ......++...+++|..+
T Consensus 126 ~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~~ 205 (405)
T 3zu3_A 126 LTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGGE 205 (405)
T ss_dssp HHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhchh
Confidence 665532 7899999998630 010 112345677788888776
Q ss_pred HH-HHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---e-E
Q 022112 96 TL-TLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---C-T 165 (302)
Q Consensus 96 ~~-~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~-~ 165 (302)
.. .+++++... +.++|.+||....-.. +......|+.+|...+.+.+.++.. . .
T Consensus 206 ~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~----------------p~~~~~aY~AaKaal~~ltrsLA~Ela~~~G 269 (405)
T 3zu3_A 206 DWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH----------------DIYWNGSIGAAKKDLDQKVLAIRESLAAHGG 269 (405)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT----------------TTTTTSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC----------------CCccchHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 65 555655432 3468999986532211 1111268999999999988776433 4 6
Q ss_pred EeeecccC
Q 022112 166 LRVRMPIS 173 (302)
Q Consensus 166 lR~~~v~g 173 (302)
+|...+..
T Consensus 270 IRVNaVaP 277 (405)
T 3zu3_A 270 GDARVSVL 277 (405)
T ss_dssp CEEEEEEC
T ss_pred eEEEEEEe
Confidence 77666544
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=93.62 Aligned_cols=97 Identities=19% Similarity=0.125 Sum_probs=72.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCC--------CC------------hhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRL--------EN------------RASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl--------~~------------~~~~~~~~~~~~~d~Vi~~a 70 (302)
++|||+||||+||+|..++..|+++| ++|+++..|- .+ ..++.+++. ++|+|||+|
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~a 84 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVPA 84 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 56799999999999999999999998 7887754321 10 224455666 899999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
+... ........+...|+.+++++++++++.+.+ +|+++|.
T Consensus 85 g~~~-----~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 85 GVPR-----KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCC-----CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CcCC-----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 9662 112234567889999999999999998755 7777765
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.3e-09 Score=90.63 Aligned_cols=95 Identities=7% Similarity=-0.032 Sum_probs=70.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-------cEEEeecC--------------CCCh-----------hhHHHHHhhc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-------DFTYGSGR--------------LENR-----------ASLEADIAAV 61 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-------~V~~~~~d--------------l~~~-----------~~~~~~~~~~ 61 (302)
.|||+||||+||+|++++..|+.+|+ +|+++..+ +.+. .++.+++.
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~-- 82 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK-- 82 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT--
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC--
Confidence 47999999999999999999999885 67775443 1110 22344555
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-C--eEEEEcC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-L--ILINYAT 115 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~--~~v~~SS 115 (302)
++|+|||+|+... ....+..+++..|+.+++++++++++.+ . ++|++|.
T Consensus 83 ~aD~Vi~~ag~~~-----~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 83 DADVALLVGARPR-----GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp TCSEEEECCCCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCCEEEEeCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 8999999999762 2233566788999999999999999984 4 4666664
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=89.40 Aligned_cols=133 Identities=13% Similarity=0.001 Sum_probs=88.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEE------------------------------------eecCCCChhhHH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY------------------------------------GSGRLENRASLE 55 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~------------------------------------~~~dl~~~~~~~ 55 (302)
..+++|||||++.||.++++.|++ .|.+|++ +.+|+++.+++.
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 356899999999999999999999 9988765 345778877766
Q ss_pred HHHh----hc--CCCEEEEccccC------------C-CCCc----------------------chhhhhHHHHHHHhHH
Q 022112 56 ADIA----AV--KPTHVFNAAGVT------------G-RPNV----------------------DWCESHKVETIRTNVV 94 (302)
Q Consensus 56 ~~~~----~~--~~d~Vi~~a~~~------------~-~~~~----------------------~~~~~~~~~~~~~n~~ 94 (302)
++++ .+ ++|++||.||.. + .... .....++...+.+|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 5553 22 689999999862 0 0001 1233456667777766
Q ss_pred HHH-HHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc
Q 022112 95 GTL-TLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE 161 (302)
Q Consensus 95 ~~~-~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~ 161 (302)
+.. .+++++... +.++|.+||....-.. +......|+.+|...+.+.+.++
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~----------------p~~~~~aY~ASKaAl~~lTrsLA 276 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTEITW----------------PIYWHGALGKAKVDLDRTAQRLN 276 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH----------------HHHTSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC----------------CCccchHHHHHHHHHHHHHHHHH
Confidence 554 556665432 3468999886432210 00012589999999999887654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.8e-09 Score=88.38 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=68.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeec--CCCChh----hH--------------------HHHHhhcCCCEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSG--RLENRA----SL--------------------EADIAAVKPTHV 66 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~--dl~~~~----~~--------------------~~~~~~~~~d~V 66 (302)
|||+||||+||+|++++..|+.+|+ ++..+.. +-...+ ++ .++++ ++|+|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~--gaD~V 78 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIID--ESDVV 78 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGT--TCSEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhC--CCCEE
Confidence 6999999999999999999999885 3444332 210000 01 22233 78999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGC 117 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~ 117 (302)
||+|+... ....+....+..|+.+++++++++++.+ + +|+++|.-
T Consensus 79 i~~Ag~~~-----~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNP 124 (313)
T 1hye_A 79 IITSGVPR-----KEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNP 124 (313)
T ss_dssp EECCSCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSS
T ss_pred EECCCCCC-----CCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCc
Confidence 99999662 2233556789999999999999999988 6 77777763
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.1e-08 Score=84.87 Aligned_cols=143 Identities=12% Similarity=-0.052 Sum_probs=95.2
Q ss_pred cccEEEEEcCCcchHHH--HHHHHHhCCCcEEE------------------------------------eecCCCChhhH
Q 022112 13 KPLKFLIYGRTGWIGGL--LGKLCQAQSIDFTY------------------------------------GSGRLENRASL 54 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~--l~~~L~~~g~~V~~------------------------------------~~~dl~~~~~~ 54 (302)
..+++|||||++.||.. +++.|.+.|.+|++ +.+|+++.+++
T Consensus 59 ~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~v 138 (418)
T 4eue_A 59 GPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNETK 138 (418)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHHH
Confidence 45689999999999999 99999998988843 56789998887
Q ss_pred HHHHhhc-----CCCEEEEccccCC------------CCCc-----------------------chhhhhHHHHHHHhHH
Q 022112 55 EADIAAV-----KPTHVFNAAGVTG------------RPNV-----------------------DWCESHKVETIRTNVV 94 (302)
Q Consensus 55 ~~~~~~~-----~~d~Vi~~a~~~~------------~~~~-----------------------~~~~~~~~~~~~~n~~ 94 (302)
.++++.. ++|++||+||... ...+ .....+....+.+|..
T Consensus 139 ~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~~ 218 (418)
T 4eue_A 139 DKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMGG 218 (418)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhhH
Confidence 7766543 6899999998630 0000 1133455566666665
Q ss_pred HHH-HHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC--CchhhhHHHHHHHHHhhcCc---
Q 022112 95 GTL-TLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG--SFYSKTKAMVEELLKNFENV--- 163 (302)
Q Consensus 95 ~~~-~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~--~~Y~~~K~~~E~~~~~~~~~--- 163 (302)
+.. .+++++... +.++|.+||....-. .|.. ..|+.+|...+.+.+.++..
T Consensus 219 ~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~------------------~p~~~~~aY~ASKaAL~~ltrsLA~ELa~ 280 (418)
T 4eue_A 219 EDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT------------------YKIYREGTIGIAKKDLEDKAKLINEKLNR 280 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG------------------TTTTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC------------------CCccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 544 555555443 336888888643211 1222 78999999999988765432
Q ss_pred -eEEeeecccC
Q 022112 164 -CTLRVRMPIS 173 (302)
Q Consensus 164 -~~lR~~~v~g 173 (302)
..+|...+..
T Consensus 281 ~~GIrVN~V~P 291 (418)
T 4eue_A 281 VIGGRAFVSVN 291 (418)
T ss_dssp HHSCEEEEEEC
T ss_pred ccCeEEEEEEC
Confidence 2466655544
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-08 Score=84.94 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=68.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC--CCh------hhHHHH----------------HhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL--ENR------ASLEAD----------------IAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl--~~~------~~~~~~----------------~~~~~~d~Vi~~a 70 (302)
|||+||||+|++|+.++..|+..|+...+.-.|+ ... .++.+. ++ ++|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~--~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTA--GSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhC--CCCEEEEcC
Confidence 6999999999999999999998886332333344 211 112222 22 799999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGC 117 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~ 117 (302)
+... .........+..|+.+++++++++++.+.+ +|+++|.-
T Consensus 79 g~~~-----~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNP 121 (303)
T 1o6z_A 79 GIPR-----QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP 121 (303)
T ss_dssp CCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence 9662 122345567899999999999999998755 77777653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-08 Score=102.91 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=91.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEE---------------------------eecCCCChhhHHHHHhhc---
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTY---------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
..+++|||||+|.||..+++.|+++|.+ |++ +.+|++|.+++.+++++.
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999999987 443 467899998887776542
Q ss_pred -CCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
.+|+|||+|+.... +..+....++...+++|+.|+.++.+++... .-+||++||....-+.
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~-------------- 2028 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN-------------- 2028 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC--------------
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC--------------
Confidence 68999999996521 0111234466778899999999998887654 2369999986543211
Q ss_pred CCCCCCCCchhhhHHHHHHHHHh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKN 159 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~ 159 (302)
+....|+.+|...+.+.+.
T Consensus 2029 ----~g~~~Y~aaKaal~~l~~~ 2047 (2512)
T 2vz8_A 2029 ----AGQANYGFANSAMERICEK 2047 (2512)
T ss_dssp ----TTCHHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHH
Confidence 2336899999999999873
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-06 Score=89.52 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred cccEEEEEcCCcc-hHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhc-
Q 022112 13 KPLKFLIYGRTGW-IGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAV- 61 (302)
Q Consensus 13 ~~~~ilItGatG~-iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~- 61 (302)
.++.+|||||++. ||..+++.|++.|.+|++ +.+|+++.+++..+++..
T Consensus 2135 ~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i~ 2214 (3089)
T 3zen_D 2135 XDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWVG 2214 (3089)
T ss_dssp CCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 3568999999999 999999999999999876 457899998887775422
Q ss_pred --------CCCEEEEccccC----C--CCCcchhhh----hHHHHHHHhHHHHHHHHHHHHHh----CC--e--EEEEcC
Q 022112 62 --------KPTHVFNAAGVT----G--RPNVDWCES----HKVETIRTNVVGTLTLADVCRDK----GL--I--LINYAT 115 (302)
Q Consensus 62 --------~~d~Vi~~a~~~----~--~~~~~~~~~----~~~~~~~~n~~~~~~ll~~~~~~----~~--~--~v~~SS 115 (302)
++|++||+||.. . .+....... ..+..+++|+.++..+++.+... +. + ++..+|
T Consensus 2215 ~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~s 2294 (3089)
T 3zen_D 2215 TEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPGS 2294 (3089)
T ss_dssp SCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred hhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEECC
Confidence 589999999961 0 000011111 23445788888888887776542 21 1 222222
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhc-C-----c---eEEeeecccCCCCCCchhhHHHH
Q 022112 116 GCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-N-----V---CTLRVRMPISSDLSNPRNFITKI 186 (302)
Q Consensus 116 ~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~-~-----~---~~lR~~~v~g~~~~~~~~~~~~~ 186 (302)
...+. .+....|+.+|...+.+.+.++ + . ..+.|+++-+.............
T Consensus 2295 -s~~g~------------------~g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~~~ 2355 (3089)
T 3zen_D 2295 -PNRGM------------------FGGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIVSA 2355 (3089)
T ss_dssp -SSTTS------------------CSSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTHHH
T ss_pred -ccccc------------------CCCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHHHH
Confidence 11110 0112589999999998876652 2 1 23344444432211111111111
Q ss_pred hcccccccccCCcccHhhHHHHHHHHHhcCC-----CC--eEEecCCC---ccCHHHHHHHHH
Q 022112 187 TRYEKVVNIPNSMTILDELLPISIEMAKRNL-----TG--IWNFTNPG---VVSHNEILEMYR 239 (302)
Q Consensus 187 ~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-----~~--~~~~~~~~---~~s~~e~~~~~~ 239 (302)
... ........+|+|.+++.++.... .. ...+.++- ...+.++...+.
T Consensus 2356 ~~~-----~~~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~ 2413 (3089)
T 3zen_D 2356 VEE-----AGVTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKAR 2413 (3089)
T ss_dssp HGG-----GSCBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHH
T ss_pred HHh-----cCCCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHH
Confidence 111 11112268999999999775321 11 24444543 367888877654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.7e-07 Score=77.43 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=62.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
..|||+|+|| |++|+.+++.|.+. ++|++ +..|..|.+++.+.++ ++|+||+++++.
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~p~~-- 88 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE-FDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGALPGF-- 88 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT-SEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECCCGG--
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC-CCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEecCCc--
Confidence 4579999998 99999999998754 67766 5678999999999999 889999998743
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
. ...++++|.+.++.+|=+|
T Consensus 89 ------~-------------~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 89 ------L-------------GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp ------G-------------HHHHHHHHHHHTCEEEECC
T ss_pred ------c-------------cchHHHHHHhcCcceEeee
Confidence 0 1248899999998877654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.8e-07 Score=80.10 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=63.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+++|+|+| +|++|+++++.|++.|++|++ +.+|+.+.+++.++++ ++|+|||+++..
T Consensus 3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~~ 79 (450)
T 1ff9_A 3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 79 (450)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC--
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCccc
Confidence 46899998 899999999999999998877 2347777778888887 899999999864
Q ss_pred CCCCcchhhhhHHHHHHH--h-------HHHHHHHHHHHHHhCCeE
Q 022112 74 GRPNVDWCESHKVETIRT--N-------VVGTLTLADVCRDKGLIL 110 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~--n-------~~~~~~ll~~~~~~~~~~ 110 (302)
. . . .-....++. | ...+.+++++|++.++++
T Consensus 80 ~---~--~-~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 80 F---H--A-TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp C---H--H-HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred c---c--h-HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 1 1 1 111122221 2 235678999999998863
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=64.99 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=43.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHH-HhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEAD-IAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~~ 72 (302)
+++|+|+|+ |.+|+.+++.|.+.|++|++ +.+|.++.+.+.++ +. ++|+||++++.
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~~d~vi~~~~~ 80 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIR--NFEYVIVAIGA 80 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGG--GCSEEEECCCS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCC--CCCEEEECCCC
Confidence 457999997 99999999999999999887 34556665555443 44 78999998773
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.1e-06 Score=77.68 Aligned_cols=78 Identities=26% Similarity=0.310 Sum_probs=61.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC---cEEE-------------------------eecCCCChhhHHHHHhhcCCCE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI---DFTY-------------------------GSGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~---~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~ 65 (302)
||||+|+|| |++|+.+++.|+++|. +|++ +..|+++.+++.+++++.++|+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 569999998 9999999999999983 5655 2567888899999998667999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
|||+++.. . ...++++|.+.+++++-+
T Consensus 80 Vin~ag~~----~-----------------~~~v~~a~l~~g~~vvD~ 106 (405)
T 4ina_A 80 VLNIALPY----Q-----------------DLTIMEACLRTGVPYLDT 106 (405)
T ss_dssp EEECSCGG----G-----------------HHHHHHHHHHHTCCEEES
T ss_pred EEECCCcc----c-----------------ChHHHHHHHHhCCCEEEe
Confidence 99998854 0 024778888888776654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=73.62 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=49.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+.+++|||||+|.+|+++++.|++.|.+|++. .+|+++.+++.+.++ .+|+|||+
T Consensus 118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~DvlVn~ 195 (287)
T 1lu9_A 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK--GAHFVFTA 195 (287)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT--TCSEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHH--hCCEEEEC
Confidence 34689999999999999999999999998772 246777777877777 68999999
Q ss_pred cccC
Q 022112 70 AGVT 73 (302)
Q Consensus 70 a~~~ 73 (302)
++..
T Consensus 196 ag~g 199 (287)
T 1lu9_A 196 GAIG 199 (287)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 9854
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.6e-06 Score=61.48 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=40.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee-------------------cCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS-------------------GRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~-------------------~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
..|+|+|+|+ |++|+.+++.|.+.|++|+++. +|..+.+.+.+. +. ++|+||++..
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~~d~vi~~~~ 78 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIE--DADMYIAVTG 78 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTT--TCSEEEECCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcc--cCCEEEEeeC
Confidence 4579999986 9999999999999999988833 334444433322 23 7899998854
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-06 Score=72.57 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=68.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecC--------CCC------------hhhHHHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGR--------LEN------------RASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~d--------l~~------------~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+||+|++|..++..|+..| ++|+++..| +.+ ..++.+++. ++|+||++|+.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~--~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK--GCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT--TCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC--CCCEEEECCCc
Confidence 699999999999999999999988 677775333 111 124566677 89999999997
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
.. ....+..+....|+..++.+++.+++... ++|++|
T Consensus 79 ~~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s 117 (314)
T 1mld_A 79 PR-----KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (314)
T ss_dssp CC-----CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CC-----CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 63 11223345678999999999999988753 455543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-07 Score=76.07 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=66.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--c-----EEEeecC------------CCC-----------hhhHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--D-----FTYGSGR------------LEN-----------RASLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~-----V~~~~~d------------l~~-----------~~~~~~~~~~~~~ 63 (302)
.|||+||||+|+||++++..|+..|. + ++.+..+ +.+ .....+.+. ++
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~--da 80 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK--DL 80 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT--TC
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhC--CC
Confidence 47999999999999999999998764 4 4443221 100 011223344 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC---eEEEEc
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL---ILINYA 114 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~---~~v~~S 114 (302)
|+||++||... ....+..+.++.|+..++++++++++.+. +++.+|
T Consensus 81 DvVvitAg~pr-----kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvs 129 (333)
T 5mdh_A 81 DVAILVGSMPR-----RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (333)
T ss_dssp SEEEECCSCCC-----CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CEEEEeCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 99999998652 23345667889999999999999999864 344444
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-06 Score=61.86 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=44.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|++|+|+|+ |++|+.+++.|.++|++|++ +.+|.++++.+.++ .-.++|.||.+.+
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC
Confidence 568999996 99999999999999999988 55677777766654 1127899997755
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.2e-06 Score=67.47 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=45.4
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEeecCCC---------------ChhhHHHHH-hh
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGSGRLE---------------NRASLEADI-AA 60 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~~dl~---------------~~~~~~~~~-~~ 60 (302)
.+|+|||||| ||.+|..+++.|+++|++|+++.+... ..+++.+.+ ..
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~ 81 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER 81 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence 4679999999 999999999999999999999665422 112222222 11
Q ss_pred c-CCCEEEEccccC
Q 022112 61 V-KPTHVFNAAGVT 73 (302)
Q Consensus 61 ~-~~d~Vi~~a~~~ 73 (302)
. ++|++||+||..
T Consensus 82 ~~~~Dili~aAAvs 95 (232)
T 2gk4_A 82 VQDYQVLIHSMAVS 95 (232)
T ss_dssp GGGCSEEEECSBCC
T ss_pred cCCCCEEEEcCccc
Confidence 1 799999999976
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.4e-05 Score=69.27 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=47.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-------------------ecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-------------------SGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-------------------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
++++|+|+|+ |++|+.+++.|++. |++|++. ..|+.+.+++.++++ ++|+||++++.
T Consensus 22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp~ 98 (467)
T 2axq_A 22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIPY 98 (467)
T ss_dssp -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSCG
T ss_pred CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCch
Confidence 4568999997 99999999999998 6777762 346667777888887 89999999885
Q ss_pred C
Q 022112 73 T 73 (302)
Q Consensus 73 ~ 73 (302)
.
T Consensus 99 ~ 99 (467)
T 2axq_A 99 T 99 (467)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=64.79 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=46.1
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEeec-------------CCCChhhHHHHH-hhc-
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGSG-------------RLENRASLEADI-AAV- 61 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~~-------------dl~~~~~~~~~~-~~~- 61 (302)
.++++||||| ||.+|..+++.|+++|++|+++.+ |+.+.+++.+.+ +..
T Consensus 7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~~~ 86 (226)
T 1u7z_A 7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQ 86 (226)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGG
T ss_pred CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHhcC
Confidence 4579999999 799999999999999999988543 333444433332 222
Q ss_pred CCCEEEEccccC
Q 022112 62 KPTHVFNAAGVT 73 (302)
Q Consensus 62 ~~d~Vi~~a~~~ 73 (302)
++|++||+||..
T Consensus 87 ~~Dili~~Aav~ 98 (226)
T 1u7z_A 87 QQNIFIGCAAVA 98 (226)
T ss_dssp GCSEEEECCBCC
T ss_pred CCCEEEECCccc
Confidence 799999999975
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.4e-05 Score=67.72 Aligned_cols=60 Identities=12% Similarity=-0.026 Sum_probs=49.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHH-hCCCcEEE------------------------------------eecCCCChhhHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQ-AQSIDFTY------------------------------------GSGRLENRASLEA 56 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~-~~g~~V~~------------------------------------~~~dl~~~~~~~~ 56 (302)
.+++|||||+..+|.+.+..|+ ..|..+++ +.+|+++.+.+++
T Consensus 50 pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i~~ 129 (401)
T 4ggo_A 50 PKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIKAQ 129 (401)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHHHH
Confidence 4689999999999999988887 45666554 6789999988887
Q ss_pred HHhhc-----CCCEEEEccccC
Q 022112 57 DIAAV-----KPTHVFNAAGVT 73 (302)
Q Consensus 57 ~~~~~-----~~d~Vi~~a~~~ 73 (302)
.++.. ++|++||.+|..
T Consensus 130 vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 130 VIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHhcCCCCEEEEecccc
Confidence 77644 899999999965
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-05 Score=67.30 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=62.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCC----------CC----------hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRL----------EN----------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl----------~~----------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+|||.|+|++|++|+.++..|+..| .+|+.+..|- .+ ..+..+.+. ++|+||.+||
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~--dADvVvitaG 85 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALT--DAKYIVSSGG 85 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHT--TEEEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhC--CCCEEEEccC
Confidence 5799999999999999999999988 4777743321 10 122344555 8899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL 108 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~ 108 (302)
.. .....+..+.+..|+...+.+.+.+.+.+.
T Consensus 86 ~p-----~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p 117 (343)
T 3fi9_A 86 AP-----RKEGMTREDLLKGNAEIAAQLGKDIKSYCP 117 (343)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65 233345677889999999999999998753
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.6e-05 Score=61.97 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=54.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-ecCC------------------CChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-SGRL------------------ENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~~dl------------------~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
||||.|+|++|.+|+.+++.+.+. ++++++. ..+- .-.+++.+++. ++|+||++..+.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~--~~DVVIDfT~p~ 84 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCA--EADYLIDFTLPE 84 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHH--HCSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhc--CCCEEEEcCCHH
Confidence 579999999999999999999875 5666662 2211 01245667777 799999985421
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
.+...++.|.+.++++|.-+
T Consensus 85 ---------------------a~~~~~~~al~~G~~vVigT 104 (272)
T 4f3y_A 85 ---------------------GTLVHLDAALRHDVKLVIGT 104 (272)
T ss_dssp ---------------------HHHHHHHHHHHHTCEEEECC
T ss_pred ---------------------HHHHHHHHHHHcCCCEEEEC
Confidence 22346778888888866533
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00024 Score=57.97 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=54.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNV 93 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~ 93 (302)
|||.|+|++|.+|+.+++.+.+. ++++++....-.+ +...+. .++|+||.+..+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d---l~~~~~-~~~DvvIDfT~p~-------------------- 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP---LSLLTD-GNTEVVIDFTHPD-------------------- 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC---THHHHH-TTCCEEEECSCTT--------------------
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC---HHHHhc-cCCcEEEEccChH--------------------
Confidence 68999999999999999999865 8988875432233 333333 2799999997644
Q ss_pred HHHHHHHHHHHHhCCeEEEEcC
Q 022112 94 VGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 94 ~~~~~ll~~~~~~~~~~v~~SS 115 (302)
.+...++.|.+.++++|.-++
T Consensus 57 -a~~~~~~~a~~~g~~~VigTT 77 (245)
T 1p9l_A 57 -VVMGNLEFLIDNGIHAVVGTT 77 (245)
T ss_dssp -THHHHHHHHHHTTCEEEECCC
T ss_pred -HHHHHHHHHHHcCCCEEEcCC
Confidence 123477788888887766544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00011 Score=55.48 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=40.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec----------------------CCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG----------------------RLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~----------------------dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
++|+|+|+ |.+|+.+++.|.+.|++|+++.. |.++++.+.++ +. ++|.||-+.+
T Consensus 4 ~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID--RCRAILALSD 80 (153)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT--TCSEEEECSS
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChh--hCCEEEEecC
Confidence 47999995 99999999999999999988544 44444545444 44 7788886644
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0003 Score=53.24 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..++|+|+|+ |.+|..+++.|.+.|++|+++.
T Consensus 18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid 49 (155)
T 2g1u_A 18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVD 49 (155)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEE
Confidence 4579999995 9999999999999999998843
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00016 Score=53.78 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
..+.++|+|+| .|.+|..+++.|.+.|++|++ +.+|.++++.+.++ +. ++|.||-+..
T Consensus 4 ~~~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 80 (140)
T 3fwz_A 4 VDICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLE--CAKWLILTIP 80 (140)
T ss_dssp CCCCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGG--GCSEEEECCS
T ss_pred ccCCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcc--cCCEEEEECC
Confidence 34556899999 599999999999999999988 45667776665543 33 7888886654
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.65 E-value=4.8e-05 Score=65.67 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=54.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-----C-cEEEeec--C-----------------CCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-----I-DFTYGSG--R-----------------LENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-----~-~V~~~~~--d-----------------l~~~~~~~~~~~~~~~d~Vi 67 (302)
+||||+|.||||++|+.|++.|++++ + +++.+.. + +...+.-.+.+. ++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~--~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLG--GHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHT--TCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhc--CCCEEE
Confidence 35799999999999999999999987 3 5555321 1 100000012344 799999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCcc
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCI 118 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~v 118 (302)
.+.+... ...++..+ +.|+++|-+|+..-
T Consensus 86 ~alg~~~---------------------s~~~~~~~-~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 86 LALPHGH---------------------SAVLAQQL-SPETLIIDCGADFR 114 (352)
T ss_dssp ECCTTSC---------------------CHHHHHHS-CTTSEEEECSSTTT
T ss_pred ECCCCcc---------------------hHHHHHHH-hCCCEEEEECCCcc
Confidence 9887541 12466677 77888888888743
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.1e-05 Score=64.48 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=39.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEEe-ecCCC-----C--------------hhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTYG-SGRLE-----N--------------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~-~~dl~-----~--------------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|||.|+|++|.+|+.+++.+.+ .+++++++ ..+-. + .+++.+.+. ++|+||+++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcCC
Confidence 357999999999999999998875 56777642 22110 0 122444555 7899999875
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=6e-05 Score=64.85 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=52.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc---EEEeec-------------C--CCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID---FTYGSG-------------R--LENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~~-------------d--l~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|+|||+|.||+|++|+.+++.|.+++|. ++.+.. + +.+.+ . ..+. ++|+||.+.+..
T Consensus 5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~-~-~~~~--~~DvV~~a~g~~- 79 (340)
T 2hjs_A 5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVD-S-FDFS--SVGLAFFAAAAE- 79 (340)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGG-G-CCGG--GCSEEEECSCHH-
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCC-H-HHhc--CCCEEEEcCCcH-
Confidence 4579999999999999999999976643 343211 1 11111 1 1133 789999887632
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
....++..+.+.|+++|.+|+..
T Consensus 80 --------------------~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 80 --------------------VSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp --------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred --------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence 12346677777898988887753
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00046 Score=58.58 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=61.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhh----HH------------------HHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRAS----LE------------------ADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~----~~------------------~~~~~~~~d~Vi~~ 69 (302)
|+|||.|+|| |.+|..++..|+..|+ +|+.+..|-...+. +. +.+. ++|+||.+
T Consensus 1 M~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~--~aD~Vi~a 77 (309)
T 1ur5_A 1 MRKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTA--NSDVIVVT 77 (309)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGT--TCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHC--CCCEEEEc
Confidence 4579999998 9999999999999997 76654433211111 11 1122 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
++... ............|....+.+.+.+.+.... +|++.|.
T Consensus 78 ~g~p~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 78 SGAPR-----KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp CCC-------------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 98652 112223455678888888999998887543 5544554
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0001 Score=59.24 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=42.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
|||+|+|+ |.+|+.+++.|.++|++|++ +.+|.++.+.+.++ +. ++|.||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVS--KNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCC--TTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcc--cCCEEEEecC
Confidence 68999995 99999999999999999988 45566666666554 34 7888886544
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00032 Score=60.24 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=64.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-----cEEEeecCCCCh----h---------------------hHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-----DFTYGSGRLENR----A---------------------SLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-----~V~~~~~dl~~~----~---------------------~~~~~~~~~~~d 64 (302)
.||.|+||+|.||..|+-.|..... .+.+.-.|+... + ...+.+. ++|
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~--~ad 102 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFD--GVA 102 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTT--TCS
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhC--CCC
Confidence 3999999999999999998876542 122333333210 0 1123344 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC---CeEEEEc
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG---LILINYA 114 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~---~~~v~~S 114 (302)
+||-+||.. .....+..+.+..|....+.+.+.+.+.. ++++.+|
T Consensus 103 vVvi~aG~p-----rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvs 150 (345)
T 4h7p_A 103 IAIMCGAFP-----RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVG 150 (345)
T ss_dssp EEEECCCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEECCCCC-----CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeC
Confidence 999999965 34455778889999999999999998753 3444444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0007 Score=57.75 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=64.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh----HHH-----------------HHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS----LEA-----------------DIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~----~~~-----------------~~~~~~~d~Vi~~a 70 (302)
+|||.|+|+ |++|+.++..|+..|+ +++++..+-...+. +.+ .+. ++|+||.+|
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~--~aDvVvi~a 81 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCK--DADIVCICA 81 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGT--TCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhC--CCCEEEEec
Confidence 579999995 9999999999999986 67764433111111 111 222 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
+... ....+..+.+..|+...+.+.+.+.+.... ++.+|
T Consensus 82 g~p~-----kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt 122 (326)
T 3pqe_A 82 GANQ-----KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122 (326)
T ss_dssp SCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccCC-----CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 8652 233456677889999999999999887543 44444
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=61.45 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=53.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCC----------------C--hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLE----------------N--RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~----------------~--~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+||||.|.||+|++|+.+++.|.+++. +++.+...-. + ..++.+ +. ++|+||.+.+..
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~--~vDvV~~a~g~~ 79 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LE--PADILVLALPHG 79 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CC--CCSEEEECCCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hc--CCCEEEEcCCcH
Confidence 357999999999999999999998764 6665322100 0 011111 33 799999988754
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
....++..+.+.|+++|-+|+.
T Consensus 80 ---------------------~s~~~a~~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 80 ---------------------VFAREFDRYSALAPVLVDLSAD 101 (345)
T ss_dssp ---------------------HHHHTHHHHHTTCSEEEECSST
T ss_pred ---------------------HHHHHHHHHHHCCCEEEEcCcc
Confidence 1233556667778888888875
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=7e-05 Score=59.88 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=41.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh------------------hhHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR------------------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~------------------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||+|+||+|++|+.+++.|.+.|++|+++..+.... .++.+.++ ++|+||++..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vi~~~~ 73 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAE--ACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHH--HCSEEEECSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHh--cCCEEEEeCC
Confidence 6899999999999999999999999998865542211 12333444 6899998865
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0004 Score=60.07 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=51.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcE---EEeec-------------CCCChhhH-HHHHhhcCCCEEEEccccCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDF---TYGSG-------------RLENRASL-EADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V---~~~~~-------------dl~~~~~~-~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
|+|||.|.||||++|..|++.|.++++.. ..+.. |+.- +.+ .+.+. ++|+||.+.+..
T Consensus 1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~-~~~~~~~~~--~~Dvvf~a~~~~-- 75 (366)
T 3pwk_A 1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITI-EETTETAFE--GVDIALFSAGSS-- 75 (366)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEE-EECCTTTTT--TCSEEEECSCHH--
T ss_pred CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceE-eeCCHHHhc--CCCEEEECCChH--
Confidence 46799999999999999999999886632 22111 1100 000 01233 789999887632
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
....++..+.+.|+++|-+|+..
T Consensus 76 -------------------~s~~~a~~~~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 76 -------------------TSAKYAPYAVKAGVVVVDNTSYF 98 (366)
T ss_dssp -------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -------------------hHHHHHHHHHHCCCEEEEcCCcc
Confidence 12235556667788888888864
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00053 Score=57.19 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=54.8
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-ecCC-------------------CChhhHHHHHhhcCCCEEEE
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-SGRL-------------------ENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~~dl-------------------~~~~~~~~~~~~~~~d~Vi~ 68 (302)
..++++||.|.|++|.+|+.+++.+.+. +.++++. ..+- .-.+++++++. ++|+||.
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvID 94 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILD 94 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEE
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEE
Confidence 3445679999999999999999998864 5676663 2110 01135667776 8999998
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
+..+. .+...++.|.+.++++|.-+|
T Consensus 95 FT~p~---------------------a~~~~~~~~l~~Gv~vViGTT 120 (288)
T 3ijp_A 95 FSQPQ---------------------ASVLYANYAAQKSLIHIIGTT 120 (288)
T ss_dssp CSCHH---------------------HHHHHHHHHHHHTCEEEECCC
T ss_pred cCCHH---------------------HHHHHHHHHHHcCCCEEEECC
Confidence 85421 223466788888988775444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00055 Score=53.24 Aligned_cols=55 Identities=22% Similarity=0.033 Sum_probs=41.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEE------------------eecCCCChhhHHHH--HhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY------------------GSGRLENRASLEAD--IAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~------------------~~~dl~~~~~~~~~--~~~~~~d~Vi~~a~ 71 (302)
.++|+|+| .|.+|..+++.|.+. |++|++ +.+|.++.+.+.++ +. ++|.||.+.+
T Consensus 39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~--~ad~vi~~~~ 114 (183)
T 3c85_A 39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTG--HVKLVLLAMP 114 (183)
T ss_dssp TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCC--CCCEEEECCS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCC--CCCEEEEeCC
Confidence 56899998 699999999999999 999988 34455555555443 33 6888887644
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0023 Score=54.50 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=64.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChh----hHH------------------HHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRA----SLE------------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~----~~~------------------~~~~~~~~d~Vi~~a 70 (302)
+|||.|+| +|.+|..++..|+..|. +|+++..|-...+ ++. +.+. ++|+||.++
T Consensus 5 ~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~--~aDvVIi~a 81 (321)
T 3p7m_A 5 RKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLE--NSDVVIVTA 81 (321)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGT--TCSEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHC--CCCEEEEcC
Confidence 57999999 59999999999999988 7766444422111 111 1222 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
+... ....+..+.+..|+...+.+.+.+.+... .++.+|
T Consensus 82 g~p~-----k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 82 GVPR-----KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp SCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CcCC-----CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 8652 22335566788899999999999988753 345543
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00054 Score=58.41 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=53.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hH----------------HHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SL----------------EADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~----------------~~~~~~~~~d~Vi~~a 70 (302)
.+|||.|+|+ |.+|+.++..|+..|. +++++..+-...+ ++ .+.+. ++|+||.+|
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~--~aDiVvi~a 84 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAK--DADLVVITA 84 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhc--CCCEEEECC
Confidence 3579999996 9999999999999887 6666433211001 01 11222 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~S 114 (302)
+.. .....+..+.+..|+...+.+.+.+.+..-. ++.+|
T Consensus 85 g~~-----~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 85 GAP-----QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp CCC---------------------CHHHHHHHHHTTTCCSEEEECS
T ss_pred CCC-----CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 965 2233456677888999999999999887533 44443
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00023 Score=61.69 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC---------------------CCChhhHHHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR---------------------LENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d---------------------l~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
+||.|.||+|++|+.+++.|.+++. +++++... +.-.+ .+.+. ++|+||.+.+.
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~--~~~~~--~vDvVf~atp~ 92 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK--DADFS--TVDAVFCCLPH 92 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG--GCCGG--GCSEEEECCCT
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc--hhHhc--CCCEEEEcCCc
Confidence 5899999999999999999998764 66653221 11111 11222 68999998875
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
.. +...+..+ +.|+++|-.|+.
T Consensus 93 ~~---------------------s~~~a~~~-~aG~~VId~sa~ 114 (359)
T 1xyg_A 93 GT---------------------TQEIIKEL-PTALKIVDLSAD 114 (359)
T ss_dssp TT---------------------HHHHHHTS-CTTCEEEECSST
T ss_pred hh---------------------HHHHHHHH-hCCCEEEECCcc
Confidence 41 12355566 678888887774
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00024 Score=56.02 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=28.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..++|||+||+|.+|..+++.+...|.+|++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~ 68 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYT 68 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEE
Confidence 4568999999999999999999999999887
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0028 Score=53.68 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=64.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-C--CcEEEeecCC---------CCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-S--IDFTYGSGRL---------ENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g--~~V~~~~~dl---------~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||.|+||+|++|..++..|..+ + .+++.+..+- .+. ....+.+. ++|+||-+|+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~--~aDivii~ag 78 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALE--GADVVLISAG 78 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHT--TCSEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhC--CCCEEEEeCC
Confidence 69999999999999999998875 5 3455432221 000 01123444 7899999998
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
.. .....+..+.+..|....+.+.+.+.+... .++.+|
T Consensus 79 ~~-----rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt 118 (312)
T 3hhp_A 79 VA-----RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (312)
T ss_dssp CS-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred CC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 65 234456778889999999999999988753 345544
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0021 Score=54.66 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=62.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh----H----------------HHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS----L----------------EADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~----~----------------~~~~~~~~~d~Vi~~a~ 71 (302)
+|||.|+|+ |++|..++-.|+..|. +|+++..|-...+. + .+.+. ++|+||.+++
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~--~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK--DCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT--TCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC--CCCEEEEcCC
Confidence 479999997 9999999999999987 77775443211110 0 11233 8899999998
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
... .......+....|+...+.+++.+.+..-. +|...|.
T Consensus 84 ~p~-----k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (318)
T 1y6j_A 84 ANR-----KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 124 (318)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred CCC-----CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 652 222344567788999999999999886433 4444454
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=57.41 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~ 45 (302)
|+|||.|.||+|++|+.+++.|.+++ .+|+++.
T Consensus 7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~ 40 (354)
T 1ys4_A 7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALA 40 (354)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 45799999999999999999998875 4666654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0024 Score=54.37 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=62.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChh----hHHH------------------HHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRA----SLEA------------------DIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~----~~~~------------------~~~~~~~d~Vi~~a 70 (302)
+|||.|+|| |.+|..++..|+..|+ +|+.+..|-...+ ++.+ .+. ++|+||.++
T Consensus 7 ~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~--~aDiVIiaa 83 (324)
T 3gvi_A 7 RNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIE--GADVVIVTA 83 (324)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGT--TCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHC--CCCEEEEcc
Confidence 569999997 9999999999999998 7777544432111 1111 122 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
+... ....+..+.+..|+...+.+.+.+.+... .++.+|
T Consensus 84 g~p~-----k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 84 GVPR-----KPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp SCCC-----C-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CcCC-----CCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 8652 22234456777899999999999988753 345544
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00095 Score=56.33 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=44.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++++|.|+||.|.+|+.++..|.+.|++|+++..+ ...+..+.+. ++|+||-+..
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~--~~~~~~~~~~--~aDvVilavp 74 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE--DWAVAESILA--NADVVIVSVP 74 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT--CGGGHHHHHT--TCSEEEECSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECC--cccCHHHHhc--CCCEEEEeCC
Confidence 55699999999999999999999999999887544 3345666677 8999997754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0013 Score=56.41 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=63.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh-----------------------hhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR-----------------------ASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~-----------------------~~~~~~~~~~~~d~Vi~~ 69 (302)
+|||.|+|| |.+|..++..|...|+ +|+.+..|-... .++.+.+. ++|+||-+
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~--~aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCVIVT 85 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC--CCCEEEEc
Confidence 479999997 9999999999999998 877744432111 12333444 88999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
++...-++...+..........|....+.+.+.+.+..-. +++..|
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 9765211110000023445677788888888888887433 443344
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=54.18 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=61.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHHH------------------HhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEAD------------------IAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~~------------------~~~~~~d~Vi~~a 70 (302)
|||.|+|+ |.+|..++..|+..|. +++.+..+-...+ ++.+. +. ++|+||-+|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~--~aDvVii~a 77 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTE--DSDVCIITA 77 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGT--TCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhC--CCCEEEECC
Confidence 79999996 9999999999999886 7776544432111 12221 11 789999998
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
+.. .....+..+.+..|+...+.+.+.+.+.+- .++.+|
T Consensus 78 g~~-----~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 118 (314)
T 3nep_X 78 GLP-----RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA 118 (314)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred CCC-----CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence 865 223345667888999999999999988753 344444
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00036 Score=59.90 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=52.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC---CcEEEeec--CC-------------CChhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS---IDFTYGSG--RL-------------ENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g---~~V~~~~~--dl-------------~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
+||||.|.||+|++|+.+++.|.+++ .+++.+.. +. .+.+. ..+. ++|+||.+.+..
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~--~~~~--~vDvVf~a~g~~- 76 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE--FDWS--QVHIALFSAGGE- 76 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG--CCGG--GCSEEEECSCHH-
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh--HHhc--CCCEEEECCCch-
Confidence 46899999999999999999999884 34555331 11 00010 1222 789999886632
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
.....+..+.+.|+++|-+|+..
T Consensus 77 --------------------~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 77 --------------------LSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp --------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred --------------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence 12345566677788888888753
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0011 Score=57.55 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=49.0
Q ss_pred ccEEEEEcCCcchHHHHHH-HHHhCCCc---EEEeecC-------------CC--ChhhHHHHHhhcCCCEEEEccccCC
Q 022112 14 PLKFLIYGRTGWIGGLLGK-LCQAQSID---FTYGSGR-------------LE--NRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~-~L~~~g~~---V~~~~~d-------------l~--~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
||||.|.||+|++|+.|++ .|.+++++ ++.+..+ +. +..+... +. ++|+||.+.+..
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~--~~DvVf~a~g~~- 76 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LK--ALDIIVTCQGGD- 76 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HH--TCSEEEECSCHH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hc--CCCEEEECCCch-
Confidence 5799999999999999999 55556543 2332222 11 1111222 34 899999887632
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccc
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy 119 (302)
....++..+.+.|++.++++-++.|
T Consensus 77 --------------------~s~~~a~~~~~~G~k~vVID~ss~~ 101 (367)
T 1t4b_A 77 --------------------YTNEIYPKLRESGWQGYWIDAASSL 101 (367)
T ss_dssp --------------------HHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred --------------------hHHHHHHHHHHCCCCEEEEcCChhh
Confidence 1234556666778764555433333
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0029 Score=53.03 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=64.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCCh--h----hHHH------------------HHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENR--A----SLEA------------------DIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~--~----~~~~------------------~~~~~~~d~Vi~ 68 (302)
|||.|+|| |.||+.++-.|+.++. ++..+ |+.+. + ++.+ .++ +.|+||-
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~--Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~--~aDvVvi 75 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALV--DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK--GSEIIVV 75 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEE--CSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGT--TCSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEE--eCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhC--CCCEEEE
Confidence 79999995 9999999999988774 45553 22210 0 1111 122 7899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
.||.. .....+..+.+..|....+.+.+.+.+.+.. ++.+-|.
T Consensus 76 tAG~p-----rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 76 TAGLA-----RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCCC-----CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred ecCCC-----CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99965 3444577888999999999999999987644 4444443
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0023 Score=53.76 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=64.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHH------------------HHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLE------------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~------------------~~~~~~~~d~Vi~~a 70 (302)
|||.|+|+ |.+|..++..|...|+ +|+.+..+-...+ ++. +.++ ++|+||.++
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~--~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK--GSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGT--TCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhC--CCCEEEECC
Confidence 79999998 9999999999999987 7777444321111 011 1222 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
+... ....+..+.+..|....+.+.+.+.+.+- .++++|
T Consensus 78 g~~~-----kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs 118 (294)
T 1oju_A 78 GLAR-----KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (294)
T ss_dssp CCCC-----CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred CCCC-----CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 8652 22345567788999999999999988753 355544
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0018 Score=55.33 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=52.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCC---C----------------Ch--h---hHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRL---E----------------NR--A---SLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl---~----------------~~--~---~~~~~~~~~~~d~Vi~ 68 (302)
||||.|+||||++|+.|++.|.++. +++..+...- . +. . +..+++. ++|+||.
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEEEE
Confidence 5799999999999999999999854 5666532221 0 00 0 1111113 7899997
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
+.+.. ....++..+.+.|+++|-+|+..
T Consensus 82 a~p~~---------------------~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAHE---------------------VSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCHH---------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCChH---------------------HHHHHHHHHHHCCCEEEEcCCcc
Confidence 76532 11235556667788999998863
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0038 Score=52.92 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=65.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC-CC-hh----hHHHHH--h--------------hcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL-EN-RA----SLEADI--A--------------AVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl-~~-~~----~~~~~~--~--------------~~~~d~Vi~~a 70 (302)
++||.|+|+ |.+|..++..|+..|+ +|+.+..+- .+ .+ ++.+.. . -.++|+||-++
T Consensus 8 ~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 8 RKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 358999996 9999999999999999 887765541 00 00 111110 0 01789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
+... ....+..+.+..|+...+.+.+.+.+.+- .++.+|
T Consensus 87 g~p~-----kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs 127 (315)
T 3tl2_A 87 GIAR-----KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT 127 (315)
T ss_dssp SCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence 8652 23345677888999999999999988753 345544
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0069 Score=52.41 Aligned_cols=95 Identities=7% Similarity=-0.056 Sum_probs=66.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--c---EEEeecCCCCh----h----h-----------------HHHHHhhcC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--D---FTYGSGRLENR----A----S-----------------LEADIAAVK 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~---V~~~~~dl~~~----~----~-----------------~~~~~~~~~ 62 (302)
..+||.|+||+|+||.+++-.|+..+. + +..+..|+... + + ..+.+. +
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~--d 108 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE--D 108 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--T
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhC--C
Confidence 346999999999999999999988763 2 55543333210 0 0 122333 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEc
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYA 114 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~S 114 (302)
+|+||-+||.. .....+..+.+..|....+.+.+.+.+. ++.++.+|
T Consensus 109 aDvVVitag~p-----rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvs 158 (375)
T 7mdh_A 109 VDWALLIGAKP-----RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158 (375)
T ss_dssp CSEEEECCCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred CCEEEEcCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 89999998865 2344567888999999999999999875 33455554
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0016 Score=56.26 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=52.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCCChhhHH-------------------------HHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLENRASLE-------------------------ADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~~~~~~~-------------------------~~~~~~~~d~V 66 (302)
+++||.|+||||++|..|++.|.++. .++..+...-..-..+. +.+. ++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~--~vDvv 83 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD--DVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT--TCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc--CCCEE
Confidence 45699999999999999999888765 34444321111000011 1122 78999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
|.+.+... + ..++..+.+.|+++|-+|+..
T Consensus 84 f~a~p~~~------s---------------~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 84 FSPLPQGA------A---------------GPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EECCCTTT------H---------------HHHHHHHHHTTCEEEECSSTT
T ss_pred EECCChHH------H---------------HHHHHHHHHCCCEEEEcCCCc
Confidence 99877541 1 124555567788999988864
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0016 Score=56.26 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=52.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCCCChhhHH-------------------------HHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRLENRASLE-------------------------ADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl~~~~~~~-------------------------~~~~~~~~d~V 66 (302)
+++||.|+||||++|..|++.|.++. .++..+...-..-..+. +.+. ++|+|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~~--~vDvv 83 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLMD--DVDII 83 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGCT--TCCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHhc--CCCEE
Confidence 45699999999999999999888765 34444321111000011 1122 78999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
|.+.+... + ..++..+.+.|+++|-+|+..
T Consensus 84 f~a~p~~~------s---------------~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 84 FSPLPQGA------A---------------GPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EECCCTTT------H---------------HHHHHHHHHTTCEEEECSSTT
T ss_pred EECCChHH------H---------------HHHHHHHHHCCCEEEEcCCCc
Confidence 99877541 1 124555567788999988864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0024 Score=56.34 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=46.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
..|+|+|+| .|.+|+.+++.|.+.|++|++ +.+|.++++.+..+ +. ++|.||-+..
T Consensus 3 ~~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~--~A~~viv~~~ 77 (413)
T 3l9w_A 3 HGMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAA--KAEVLINAID 77 (413)
T ss_dssp -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTT--TCSEEEECCS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCC--ccCEEEECCC
Confidence 456899999 599999999999999999988 67788888877665 45 7899886644
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=52.81 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=41.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------eecCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------GSGRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
.++|+|+|+ |.+|+.+++.|.+.|+ |++ +.+|.++++.+.++ +. ++|.||.+.+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~ 80 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVR--GARAVIVDLE 80 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCT--TCSEEEECCS
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcc--hhcEEEEcCC
Confidence 468999996 9999999999999998 877 34566666666554 45 7888886644
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.004 Score=53.16 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=61.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh----HH----------------HHHhhcCCCEEEEc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS----LE----------------ADIAAVKPTHVFNA 69 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~----~~----------------~~~~~~~~d~Vi~~ 69 (302)
+++|||.|+|| |.+|..++-.|+..+. +++.+..|-...+. +. +.+. ++|+||.+
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~--~aDvVii~ 83 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAK--DADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGG--GCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhC--CCCEEEEc
Confidence 45579999998 9999999999998876 55553332100111 11 1122 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEE
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINY 113 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~ 113 (302)
++... ............|+...+.+.+.+.+... .++.+
T Consensus 84 ag~~~-----k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 124 (326)
T 2zqz_A 84 AGAPQ-----KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA 124 (326)
T ss_dssp CCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 98652 22234556778899999999999888753 35554
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0026 Score=54.25 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=64.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh----HHH-----------------HHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS----LEA-----------------DIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~----~~~-----------------~~~~~~~d~Vi~~ 69 (302)
..|||.|+|+ |.+|..++..|+.+|. +++.+..+-...+. +.+ .+. ++|+||.+
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~--~aDiVvi~ 94 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTA--NSKLVIIT 94 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGT--TEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhC--CCCEEEEc
Confidence 4679999996 9999999999999986 66664332110011 111 122 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
||.. .....+..+.+..|+...+.+.+.+.+..- .++.+|
T Consensus 95 aG~~-----~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 95 AGAR-----QQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp CSCC-----CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCCC-----CCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9865 223345667888999999999999988743 344444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00068 Score=56.84 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=31.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||+|.|+|+||.+|+.+++.|.+.|++|+++..+
T Consensus 10 mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 56799999988999999999999999999876544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00086 Score=60.18 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=44.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHH-HhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEAD-IAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~ 69 (302)
..|||+|.| .|-+|++|++.|.++||+|++ +.||.++++.++++ ++ ++|.+|-+
T Consensus 2 ~~M~iiI~G-~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~--~ad~~ia~ 75 (461)
T 4g65_A 2 NAMKIIILG-AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQ--DADMLVAV 75 (461)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTT--TCSEEEEC
T ss_pred CcCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCC--cCCEEEEE
Confidence 468999999 599999999999999999988 67778888777665 33 78888744
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=57.60 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=44.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC------------------CCChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR------------------LENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d------------------l~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++|+|+|+ |.+|..+++.|...|++|+++..+ ..+.+++.+.+. ++|+||++++..
T Consensus 166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~--~~DvVi~~~g~~ 240 (369)
T 2eez_A 166 PASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ--HADLLIGAVLVP 240 (369)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH--HCSEEEECCC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh--CCCEEEECCCCC
Confidence 469999998 999999999999999998884332 234556666666 789999998854
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0033 Score=54.20 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~ 45 (302)
+++||.|.||+|++|+.+++.|.++. .+++++.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 45799999999999999999998865 3566554
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00098 Score=57.10 Aligned_cols=32 Identities=13% Similarity=0.280 Sum_probs=28.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
...++||+||+|.||..+++.+...|.+|+++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~ 176 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGA 176 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEE
Confidence 35689999999999999999999999998873
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0038 Score=53.09 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=58.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh----HH----------------HHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS----LE----------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~----~~----------------~~~~~~~~d~Vi~~a 70 (302)
+.|||.|+|| |.+|..++-.|+..+. +++++..|-...+. +. +.+. ++|+||.++
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~--~aDvVii~a 80 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK--DADLVVITA 80 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhC--CCCEEEECC
Confidence 3479999998 9999999999998876 55553332110111 11 1122 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEE
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINY 113 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~ 113 (302)
+... .......+....|+...+.+.+.+++.+. .++.+
T Consensus 81 g~~~-----~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 120 (318)
T 1ez4_A 81 GAPQ-----KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA 120 (318)
T ss_dssp CC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 8652 22233446678889999999999988753 35554
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0019 Score=51.49 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=53.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTN 92 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n 92 (302)
..||++|+|++|-+|+.+++...+.|+++++.. |..+.++ +. ++|+||++..+.
T Consensus 11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~i-d~~~~~~----l~--~~DVvIDFT~P~------------------- 64 (228)
T 1vm6_A 11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKV-DVNGVEE----LD--SPDVVIDFSSPE------------------- 64 (228)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-ETTEEEE----CS--CCSEEEECSCGG-------------------
T ss_pred ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEE-cCCCccc----cc--CCCEEEECCCHH-------------------
Confidence 358999999999999999988777899887742 2111111 12 789999886643
Q ss_pred HHHHHHHHHHHHHhCCeEEEEcC
Q 022112 93 VVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 93 ~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
.+...++.|.+.++++|.-+|
T Consensus 65 --a~~~~~~~~~~~g~~~ViGTT 85 (228)
T 1vm6_A 65 --ALPKTVDLCKKYRAGLVLGTT 85 (228)
T ss_dssp --GHHHHHHHHHHHTCEEEECCC
T ss_pred --HHHHHHHHHHHcCCCEEEeCC
Confidence 123477888888988777555
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00083 Score=54.72 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC--------hhhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN--------RASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~--------~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
||||.|+|+ |.+|+.+++.+.++++++++. .|... .+++.+.+ ++|+||+++.+
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~-~d~~~~~~~gv~v~~dl~~l~---~~DVvIDft~p 64 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGV-IENTPKATTPYQQYQHIADVK---GADVAIDFSNP 64 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEE-ECSSCC--CCSCBCSCTTTCT---TCSEEEECSCH
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEE-EecCccccCCCceeCCHHHHh---CCCEEEEeCCh
Confidence 689999998 999999999999988765552 22211 11222222 78999998764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=57.28 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
+++||.|.||||++|..|++.|.++. .++..
T Consensus 18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~ 49 (381)
T 3hsk_A 18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHA 49 (381)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEE
T ss_pred CccEEEEECCCChHHHHHHHHHHcCCCceEEE
Confidence 34589999999999999999998876 34543
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.015 Score=51.57 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=32.6
Q ss_pred CCCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 9 DAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 9 ~~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
...+.|.+|-|+| .||+|..++..|.+.||+|+++..|
T Consensus 16 p~~~~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did 53 (444)
T 3vtf_A 16 PRGSHMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVN 53 (444)
T ss_dssp CTTCCCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCCCCCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4445667999998 8999999999999999999996655
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00099 Score=53.34 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=41.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh----------hHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|+|.|+| +|.+|+.+++.|.+.|++|++...+....+ ++.+.++ ++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~--~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVS--SPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTT--SCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHh--CCCEEEECCC
Confidence 467999999 899999999999999999988655421111 2344555 7899998765
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0075 Score=51.25 Aligned_cols=96 Identities=18% Similarity=0.127 Sum_probs=63.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHH-----------------HHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEA-----------------DIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~-----------------~~~~~~~d~Vi~~ 69 (302)
++|||.|+|| |.+|..++..|+.+|. ++.++..|-...+ ++.+ .+. ++|+||-+
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~--~aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCH--DADLVVIC 81 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGT--TCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhC--CCCEEEEC
Confidence 3469999998 9999999999998884 6666443311011 1111 122 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
++... ....+.......|+...+.+.+.+.+.... +|+..|.
T Consensus 82 ag~~~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 124 (317)
T 3d0o_A 82 AGAAQ-----KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124 (317)
T ss_dssp CCCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCCC-----CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 98652 122344567788899889999988887433 4444444
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0015 Score=56.25 Aligned_cols=33 Identities=18% Similarity=0.075 Sum_probs=29.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
...+|||+||+|.+|..+++.+...|.+|+++.
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~ 201 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGID 201 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEc
Confidence 346899999999999999999999999988743
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.006 Score=51.82 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=59.0
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh--hH--HHHH--------------hh-cCCCEEEEcc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA--SL--EADI--------------AA-VKPTHVFNAA 70 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~--~~--~~~~--------------~~-~~~d~Vi~~a 70 (302)
.++|||.|+|+ |.+|..++..|...|+ +|+++..+-...+ .+ .+.+ +. .++|+||-++
T Consensus 5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v 83 (319)
T 1lld_A 5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA 83 (319)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence 34689999997 9999999999999998 8888655421111 11 1100 00 1679999888
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
+... ....+.......|......+++.+++.+
T Consensus 84 ~~~~-----~~g~~r~~~~~~n~~~~~~~~~~i~~~~ 115 (319)
T 1lld_A 84 GPRQ-----KPGQSRLELVGATVNILKAIMPNLVKVA 115 (319)
T ss_dssp CCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7542 1223445667788888888888887754
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0072 Score=52.41 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.3
Q ss_pred cccEEEEEcCCcchHHHHHH-HHHhCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGK-LCQAQSI 39 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~-~L~~~g~ 39 (302)
..|||-|.||||++|+.|++ .|.++.+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~ 30 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDF 30 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCC
Confidence 35799999999999999999 7777763
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=55.35 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=41.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-----------------CCCChhh---HHHHHhhcCCCEEEEcccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-----------------RLENRAS---LEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-----------------dl~~~~~---~~~~~~~~~~d~Vi~~a~~ 72 (302)
...+|||+||+|.+|..+++.+...|.+|+++.. |..+.+. +.+.....++|+||++++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~ 224 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK 224 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence 3458999999999999999999999999887332 2333222 2222222368889988873
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0033 Score=55.66 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=43.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
+++||+|+| +|.+|+.+++.+.+.|++|++ +..|..|.+.+.++++ ++|+|+.
T Consensus 34 ~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~--~~D~V~~ 102 (419)
T 4e4t_A 34 PGAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAG--LCEAVST 102 (419)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHH--HCSEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHh--cCCEEEE
Confidence 345899998 689999999999999999988 3455677888888886 8999883
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0022 Score=53.27 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=43.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhh--------------cCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA--------------VKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~--------------~~~d~Vi~~a~~~ 73 (302)
.++++|+|+ |.+|+.++..|.+.|.+|++..++....+.+.+.+.. .++|+||++++..
T Consensus 119 ~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 119 GLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 191 (271)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCC
Confidence 468999997 6799999999999999888865553322333322211 2689999999865
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.019 Score=48.50 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=62.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC--CCcEEEeecCCCChhhHHH----------------------HHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYGSGRLENRASLEA----------------------DIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~~dl~~~~~~~~----------------------~~~~~~~d~Vi~~a 70 (302)
|||.|+|+ |.+|..++..|... |++|+++..|-...+.+.. .+. ++|+||-++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~--~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTA--NSDIVIITA 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT--TCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHC--CCCEEEEeC
Confidence 68999997 99999999999985 7899886665322222110 022 689999988
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEE
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINY 113 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~ 113 (302)
+... ............|+.....+.+.+++... .++.+
T Consensus 78 ~~p~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~ 117 (310)
T 1guz_A 78 GLPR-----KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117 (310)
T ss_dssp SCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred CCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 7541 12223456777888888888888887743 34444
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0017 Score=55.50 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=42.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-----------------CCCChhhHHHHH---hhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-----------------RLENRASLEADI---AAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-----------------dl~~~~~~~~~~---~~~~~d~Vi~~a~ 71 (302)
...+|||+||+|.+|..+++.+...|.+|+++.. |..+.+..+.+. ...++|+||++++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g 218 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG 218 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc
Confidence 3468999999999999999999999999887332 233322222222 2236899999988
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0098 Score=48.64 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=28.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL 48 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl 48 (302)
.++|+|+| .|-+|+.+++.|...|. +++++..|.
T Consensus 31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 35899999 57899999999999996 777766664
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0046 Score=52.64 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=63.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHHHHh---------------hcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEADIA---------------AVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~~~~---------------~~~~d~Vi~~a~ 71 (302)
..|||.|+|+ |.+|..++..|+..|. +|+.+..+-...+ ++.+... -.++|+||-+||
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeCC
Confidence 4579999998 9999999999999986 7776443211011 1111110 017899999998
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
... ....+..+.+..|+...+.+.+.+.+.+- .++.+|
T Consensus 99 ~p~-----kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 99 ARQ-----QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp CCC-----CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCC-----CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 652 22334556777888888889998888743 344444
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0081 Score=50.72 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=53.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhhH--------------------HHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRASL--------------------EADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~~--------------------~~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+|| |.+|..++..|+..|+ +|+++..|-...+.. .+.+. ++|+||-+++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~--~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELA--DAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGT--TCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhC--CCCEEEEcCCC
Confidence 68999997 9999999999999998 888854441100100 01222 78999999875
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
.. .......+....|+...+.+++.+.+..
T Consensus 78 ~~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~ 107 (304)
T 2v6b_A 78 NQ-----KPGESRLDLLEKNADIFRELVPQITRAA 107 (304)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHC
T ss_pred CC-----CCCCcHHHHHHhHHHHHHHHHHHHHHhC
Confidence 42 1122334566788888888888888764
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0028 Score=54.22 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFT 42 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~ 42 (302)
|||.|.||+|++|+.+++.|.+++|++.
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~ 28 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLS 28 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcE
Confidence 6899999999999999999997776643
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.008 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=22.2
Q ss_pred cEEEEEcCCcchHHHHHH-HHHhCCC
Q 022112 15 LKFLIYGRTGWIGGLLGK-LCQAQSI 39 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~-~L~~~g~ 39 (302)
|||-|.||||++|+.|++ .|.++.+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~ 26 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDF 26 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 689999999999999999 7777763
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.01 Score=50.44 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=58.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhhHHH--------------------HHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRASLEA--------------------DIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~~~~--------------------~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+|+ |.+|..++..|+..|+ +|+++..+-...+.+.. .+. ++|+||-+++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~--~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLK--GSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGT--TCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhC--CCCEEEEccCC
Confidence 68999997 9999999999999998 88886554211111111 112 68999998886
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
.. .......+....|......+++.+.+..
T Consensus 78 ~~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~ 107 (319)
T 1a5z_A 78 PQ-----KPGETRLQLLGRNARVMKEIARNVSKYA 107 (319)
T ss_dssp CC-----CSSCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-----CCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 52 1112344566778888888888887763
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0058 Score=53.41 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=46.4
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEee----------------cCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS----------------GRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~----------------~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
+++|||||+|+ |.+|..+++.+.+.|++|+++. .|..|.+.+.+++++.++|.|+...
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~ 82 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEI 82 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECC
Confidence 35679999985 7899999999999999988743 3445677788888777999998643
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.015 Score=49.44 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=56.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChh----hHH------------------HHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRA----SLE------------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~----~~~------------------~~~~~~~~d~Vi~~a 70 (302)
+|||.|+|| |.+|..++..|+..|+ +|+++..|-...+ .+. +.+. ++|+||-++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~--~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLA--GADVVIVTA 80 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhC--CCCEEEEeC
Confidence 579999997 9999999999999998 7666444421111 111 1122 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
+...-++....+.........|+...+.+.+.+.+..
T Consensus 81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~ 117 (322)
T 1t2d_A 81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC 117 (322)
T ss_dssp SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7552111000000023446667777777888777764
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0051 Score=54.94 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=29.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|+|||.|+| +|++|..++..|.+.|++|+++..|
T Consensus 1 M~mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~ 34 (450)
T 3gg2_A 1 MSLDIAVVG-IGYVGLVSATCFAELGANVRCIDTD 34 (450)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECC
Confidence 347999998 6999999999999999999986554
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0035 Score=54.11 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..+|||+||+|.+|..+++.+...|.+|+++.
T Consensus 171 g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~ 202 (351)
T 1yb5_A 171 GESVLVHGASGGVGLAACQIARAYGLKILGTA 202 (351)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 45899999999999999999999999988743
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0024 Score=54.78 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=50.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc---EEEeec-------------CCC--ChhhHHHHHhhcCCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID---FTYGSG-------------RLE--NRASLEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~~-------------dl~--~~~~~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
.|||.|.||||++|..|++.|.++.+. +..+.. |+. +.+ .+.+. ++|+||.+.+..
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~--~~~~~--~~Dvvf~a~~~~-- 74 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAE--TADPS--GLDIALFSAGSA-- 74 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETT--TSCCT--TCSEEEECSCHH--
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCC--HHHhc--cCCEEEECCChH--
Confidence 368999999999999999999988544 333211 110 000 01223 789999887733
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
....++..+.+.|+++|-+|+..
T Consensus 75 -------------------~s~~~a~~~~~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 75 -------------------MSKVQAPRFAAAGVTVIDNSSAW 97 (344)
T ss_dssp -------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -------------------HHHHHHHHHHhCCCEEEECCCcc
Confidence 12235556667788888888754
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.011 Score=49.37 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=56.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCC-----C---ChhhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRL-----E---NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl-----~---~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
+.+||+|.|+||-.|+.+++.|.+.|+++++ +.... . -..++.++.++..+|+++-+....
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~---------- 75 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAP---------- 75 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHH----------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHH----------
Confidence 4569999999999999999999999998553 32221 0 123466666666899998764421
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.+..+++.|.+.+++ +|.+++
T Consensus 76 -----------~~~~~~~ea~~~Gi~~vVi~t~ 97 (288)
T 1oi7_A 76 -----------AAADAALEAAHAGIPLIVLITE 97 (288)
T ss_dssp -----------HHHHHHHHHHHTTCSEEEECCS
T ss_pred -----------HHHHHHHHHHHCCCCEEEEECC
Confidence 233577788888988 555554
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0081 Score=53.36 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=46.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee----------------cCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS----------------GRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~----------------~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|||||+|+ |.+|..+++.+.+.|++|+++. .|..|.+.+.+++++.++|.|+....
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e 91 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIE 91 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcc
Confidence 4679999986 7899999999999999988743 34557777888887779999987544
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.018 Score=49.07 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=56.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhh----HHH------------------HHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRAS----LEA------------------DIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~----~~~------------------~~~~~~~d~Vi~~ 69 (302)
++|||.|+|| |.+|..++..|+..|+ +|+.+..|-...+. +.+ .+. ++|+||-+
T Consensus 13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~--~aD~VI~a 89 (328)
T 2hjr_A 13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQ--NSDVVIIT 89 (328)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT--TCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHC--CCCEEEEc
Confidence 4579999997 9999999999999998 87765554221111 111 112 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
++....+ .....+....|+...+.+.+.+.+..
T Consensus 90 vg~p~k~-----g~tr~dl~~~n~~i~~~i~~~i~~~~ 122 (328)
T 2hjr_A 90 AGVPRKP-----NMTRSDLLTVNAKIVGSVAENVGKYC 122 (328)
T ss_dssp CSCCCCT-----TCCSGGGHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCC-----CCchhhHHhhhHHHHHHHHHHHHHHC
Confidence 8755211 11112345667777777888777754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0042 Score=53.69 Aligned_cols=32 Identities=13% Similarity=-0.120 Sum_probs=28.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
...+|||+||+|-+|..+++.+...|.+|+++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~ 193 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVT 193 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEE
Confidence 34589999999999999999999999998873
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0028 Score=54.51 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
...+|||+||+|.+|..+++.+...|.+|+++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~ 187 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSA 187 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 346899999999999999999999999888743
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0053 Score=51.42 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=40.9
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
++||||.|+| .|.+|+.+++.|.+.|++|+++. +....+ +..+.+. ++|+||-+..
T Consensus 1 ~~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp 67 (295)
T 1yb4_A 1 SNAMKLGFIG-LGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTE--FADIIFIMVP 67 (295)
T ss_dssp ---CEEEECC-CSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHH--TCSEEEECCS
T ss_pred CCCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHh--cCCEEEEECC
Confidence 3568999998 79999999999999999998765 533222 2445555 7899997754
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0044 Score=49.71 Aligned_cols=56 Identities=23% Similarity=0.210 Sum_probs=40.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCCCChhhHHH------------HHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRLENRASLEA------------DIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl~~~~~~~~------------~~~~~~~d~Vi~~a~ 71 (302)
+||||.|+| +|.+|..+++.|.+.|++|++ ...+....+.+.+ .+. ++|+||-+..
T Consensus 22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~aDvVilavp 90 (220)
T 4huj_A 22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDAL--QADVVILAVP 90 (220)
T ss_dssp GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHT--TSSEEEEESC
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHh--cCCEEEEeCC
Confidence 357999999 899999999999999999988 5544332222221 222 6788887643
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.02 Score=48.38 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=61.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhh----H----------------HHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRAS----L----------------EADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~----~----------------~~~~~~~~~d~Vi~~a~~ 72 (302)
|||.|+|| |.+|..++-.|+..+ .+++.+..|-...+. + .+.+. ++|+||.+++.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~--~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLE--GARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT--TEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhC--CCCEEEECCCC
Confidence 68999997 999999999999887 566664433110111 1 11122 78999999986
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEE
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINY 113 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~ 113 (302)
.. ............|+...+.+.+.+++.+. .++.+
T Consensus 78 ~~-----~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~ 115 (310)
T 2xxj_A 78 AQ-----RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVA 115 (310)
T ss_dssp CC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred CC-----CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEe
Confidence 52 22234456778899999999999888743 35554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=48.60 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=41.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC--------------hhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN--------------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~--------------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++|+|+|+ |.+|+.+++.|.+.|++|++...+... .+++.+.+. ++|+||.+.+..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~Divi~at~~~ 91 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIK--NNDVIITATSSK 91 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHH--TCSEEEECSCCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhc--CCCEEEEeCCCC
Confidence 469999994 999999999999999987765444221 123344455 789999987754
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.015 Score=49.21 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=55.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhhHHH---------------------HHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRASLEA---------------------DIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~~~~---------------------~~~~~~~d~Vi~~a 70 (302)
||||.|+| +|.+|..++..|.+.| ++|+++..+-...+.+.. .+. ++|+||-++
T Consensus 1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~--~aDvViiav 77 (309)
T 1hyh_A 1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALA--DADVVISTL 77 (309)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGT--TCSEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhC--CCCEEEEec
Confidence 47999999 7999999999999999 788885554211111111 112 678999887
Q ss_pred ccCCCCCcch----hhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 71 GVTGRPNVDW----CESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
.... . ...........|+.....+++.+.+..
T Consensus 78 ~~~~-----~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~ 113 (309)
T 1hyh_A 78 GNIK-----LQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113 (309)
T ss_dssp SCGG-----GTC-------CTTHHHHHHHHHHHHHHHHHTT
T ss_pred CCcc-----cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7541 1 111223455677777778888887654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.007 Score=51.99 Aligned_cols=59 Identities=7% Similarity=0.006 Sum_probs=41.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-----------------CCCChhh---HHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-----------------RLENRAS---LEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-----------------dl~~~~~---~~~~~~~~~~d~Vi~~a~ 71 (302)
...+|||+||+|.+|..+++.+...|.+|+++.. |..+.+. +.+.....++|+||++++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g 244 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG 244 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC
Confidence 3568999999999999999999999999887322 3333221 222222226899999888
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.005 Score=51.15 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=44.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh-----------h---cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA-----------A---VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~-----------~---~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|++.|.+|++..++....+.+.+.+. + .++|+||++++..
T Consensus 118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~ 191 (272)
T 1p77_A 118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 191 (272)
T ss_dssp TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCC
Confidence 3568999997 779999999999999999887766444344433321 1 1689999998865
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.026 Score=47.88 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=59.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhhH----H------------------HHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRASL----E------------------ADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~~----~------------------~~~~~~~~d~Vi~~ 69 (302)
++|||.|+|+ |.+|..++..|+..|+ +|+++..+-...+.. . +.+. ++|+||-+
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~--~aDiVi~a 79 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADIS--GSDVVIIT 79 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT--TCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhC--CCCEEEEe
Confidence 3579999997 9999999999999998 887765553212211 0 1111 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEcC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG--LILINYAT 115 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~v~~SS 115 (302)
++...-+ .....+....|....+.+++.+.+.. ..++.+|.
T Consensus 80 vg~p~~~-----g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 80 ASIPGRP-----KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCSSCC-----SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCCCC-----CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 8765311 11122334556666667777776653 23555553
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=49.24 Aligned_cols=82 Identities=17% Similarity=0.026 Sum_probs=55.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCC-----C---ChhhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRL-----E---NRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl-----~---~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
+.+||.|.|+||.+|+.+++.|.+.|+++++ +.... . -..++.++.++..+|+++-+....
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~---------- 75 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAP---------- 75 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGG----------
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHH----------
Confidence 4569999999999999999999998988553 22211 0 123466666655899999875532
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCeE-EEEcC
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLIL-INYAT 115 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~~-v~~SS 115 (302)
.+..+++.|.+.+++. |.+++
T Consensus 76 -----------~~~~~~~ea~~~Gi~~iVi~t~ 97 (288)
T 2nu8_A 76 -----------FCKDSILEAIDAGIKLIITITE 97 (288)
T ss_dssp -----------GHHHHHHHHHHTTCSEEEECCC
T ss_pred -----------HHHHHHHHHHHCCCCEEEEECC
Confidence 1224667777788884 54444
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0053 Score=52.02 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=43.5
Q ss_pred CCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 11 GSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 11 ~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
...||||.|+| .|.+|..+++.|.+.|++|++...+-...+ +..+++. ++|+||-+..
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~--~aDvvi~~vp 86 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIK--KCKYTIAMLS 86 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCS
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHH--hCCEEEEEcC
Confidence 34578999998 799999999999999999998765533222 2344555 6798887654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0063 Score=52.59 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=27.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEe
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYG 44 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~ 44 (302)
.+|||+||+|.||..+++.+...|. +|+++
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~ 192 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGI 192 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 6899999999999999999999999 88873
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0067 Score=50.77 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=42.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh-----------------h--cCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA-----------------A--VKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~-----------------~--~~~d~Vi~~a~~~ 73 (302)
.++++|+|++ .+|+.++..|++.| +|++...+....+.+.+.+. + .++|+||++++..
T Consensus 128 ~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~ 204 (287)
T 1nvt_A 128 DKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 204 (287)
T ss_dssp SCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred CCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC
Confidence 4689999975 89999999999999 88886655333233322221 1 1689999999866
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.009 Score=49.05 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=40.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh------------hhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR------------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~------------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+||||.|+| +|.+|+.+++.|.+.|++|.+...+.... .+..+.+. ++|+||-+..
T Consensus 2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~Vi~~v~ 69 (259)
T 2ahr_A 2 NAMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGIK 69 (259)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECSC
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHh--cCCEEEEEeC
Confidence 568999999 79999999999999999887754442111 12334444 7899998755
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.016 Score=50.54 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=43.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
++++|+|+| .|.+|+.+++.+.+.|++|++ +..|..|.+.+.++++ ++|+|..
T Consensus 11 ~~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~--~~dvi~~ 79 (377)
T 3orq_A 11 FGATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQ--KCDVITY 79 (377)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHH--HCSEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHH--hCCccee
Confidence 456899999 688999999999999999988 3445667788888887 6888754
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.019 Score=48.55 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=29.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
..+++||+|+ |.+|+.++..|.+.|. +|++..++
T Consensus 153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECC
Confidence 3568999996 8899999999999998 78887666
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.013 Score=51.04 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=42.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe----------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG----------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~----------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|+||+|+|+ |.+|+.+++.|.+.|++|+++ ..|..|.+.+.++++ ++|.|+-.
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~d~v~~~ 69 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVK--GSDVTTYD 69 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHH--TCSEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHh--cCCEEEec
Confidence 468999995 899999999999999998873 234556677777775 89998854
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.022 Score=48.32 Aligned_cols=87 Identities=14% Similarity=0.229 Sum_probs=57.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHH-----------------HHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEA-----------------DIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~-----------------~~~~~~~d~Vi~~ 69 (302)
++|||.|+|+ |.+|..++..|+..|. +|+++..|-...+ .+.+ .+. ++|+||-+
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~--~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR--DADLVVIC 81 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT--TCSEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhC--CCCEEEEc
Confidence 3569999998 9999999999988774 6766544311011 1111 122 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
++....+ . ......+..|......+.+.+.+..
T Consensus 82 ~~~~~~~---g--~~r~dl~~~n~~i~~~i~~~i~~~~ 114 (316)
T 1ldn_A 82 AGANQKP---G--ETRLDLVDKNIAIFRSIVESVMASG 114 (316)
T ss_dssp CSCCCCT---T--TCSGGGHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC---C--CCHHHHHHcChHHHHHHHHHHHHHC
Confidence 9876311 1 1223456677888888888888764
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.063 Score=39.33 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=57.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCC-------------ChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLE-------------NRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~-------------~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
.++++|.| +|..|..+++.|.+. |++++++.-|-. ..+++.+.+++.++|.||-+....
T Consensus 4 ~~~vlIiG-aG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~------ 76 (141)
T 3nkl_A 4 KKKVLIYG-AGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA------ 76 (141)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS------
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC------
Confidence 45899999 588999999999875 788888543311 145677777777899888654322
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCC
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLILINYATG 116 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~ 116 (302)
.. .....+++.|.+.++++..+-+.
T Consensus 77 ----~~--------~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 ----SQ--------VQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp ----CH--------HHHHHHHHHHHTTTCEEEECCCH
T ss_pred ----CH--------HHHHHHHHHHHHcCCeEEECCCH
Confidence 00 11235888999999987666553
|
| >4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.012 Score=51.65 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=44.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-----------------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-----------------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-----------------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
.+++||||+|+ |.++..+++.+.+.|++++++ ..|..|.+.+.++++..++|.|+-.
T Consensus 5 ~~~~~ilI~g~-g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 78 (403)
T 4dim_A 5 YDNKRLLILGA-GRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATC 78 (403)
T ss_dssp -CCCEEEEECC-CGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECC
T ss_pred cCCCEEEEECC-cHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeC
Confidence 34569999995 557999999999999998884 2345567778888888889998853
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.019 Score=50.99 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=28.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+| +|++|..++..|.+.|++|+++..|
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~ 32 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6899998 7999999999999999999985443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0068 Score=50.89 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|+|+|.|+| .|.+|..++..|.+.|++|+++..+-... .++.+.+. ++|+||-+..
T Consensus 4 M~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~v~ 70 (299)
T 1vpd_A 4 MTMKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAE--QCDVIITMLP 70 (299)
T ss_dssp --CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHH--HCSEEEECCS
T ss_pred ccceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECC
Confidence 457999999 79999999999999999998754442111 12334455 6899987755
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.039 Score=44.54 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=40.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCCC---ChhhHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRLE---NRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl~---~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||.|+|. |.+|+.+++.|.+.|++++. ...+-. ..+++.+.+. .++|+||.+..
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~-~~~DvVv~~~~ 59 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQ-REMDVAVEAAS 59 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTT-SCCSEEEECSC
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhc-CCCCEEEECCC
Confidence 68999995 99999999999988998854 333310 0224666663 38999998865
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.021 Score=48.76 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=28.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEeecCCCChhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGSGRLENRAS 53 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~~dl~~~~~ 53 (302)
|+||.|.|. |.+|+.+++.|.++ +.+++++...+.+.+.
T Consensus 3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~ 42 (335)
T 1u8f_O 3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNY 42 (335)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHH
T ss_pred ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 459999996 99999999998875 4677765532344443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=48.02 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=46.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|+++.+|+.++..|+..|..|++....- ..+.+.++ +.|+||...+..
T Consensus 159 ~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---~~L~~~~~--~ADIVI~Avg~p 214 (285)
T 3p2o_A 159 EGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---KDLSLYTR--QADLIIVAAGCV 214 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---SCHHHHHT--TCSEEEECSSCT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---hhHHHHhh--cCCEEEECCCCC
Confidence 456999999999999999999999999998866443 34667777 899999988854
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0093 Score=50.38 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=42.2
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.++|||.|+| .|.+|..+++.|++.|++|++...+.... .+..++++ ++|+||-+..
T Consensus 7 ~~~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp 74 (306)
T 3l6d_A 7 SFEFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALS--ASPATIFVLL 74 (306)
T ss_dssp CCSCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHH--HSSEEEECCS
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEeC
Confidence 3567999998 89999999999999999999865542211 23344555 6899887754
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.026 Score=41.87 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=50.1
Q ss_pred cEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 15 LKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 15 ~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
.+|.|+|++ |.+|..+++.|++.|++|+.+...... ..++.++.. .+|.++-+...
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~--~vDlvvi~vp~------------- 87 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPD--KIEVVDLFVKP------------- 87 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSS--CCSEEEECSCH-------------
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCC--CCCEEEEEeCH-------------
Confidence 479999998 899999999999999987665433110 112333333 68887765321
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
..+..+++.|.+.+++.+.+.
T Consensus 88 --------~~~~~vv~~~~~~gi~~i~~~ 108 (144)
T 2d59_A 88 --------KLTMEYVEQAIKKGAKVVWFQ 108 (144)
T ss_dssp --------HHHHHHHHHHHHHTCSEEEEC
T ss_pred --------HHHHHHHHHHHHcCCCEEEEC
Confidence 122346777777888855554
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.062 Score=45.08 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=28.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|.+||-++| .|.+|..+++.|++.||+|++...+
T Consensus 4 Ms~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~ 37 (297)
T 4gbj_A 4 MSEKIAFLG-LGNLGTPIAEILLEAGYELVVWNRT 37 (297)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHHTTCEEEEC---
T ss_pred CCCcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445899998 8999999999999999999985443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.026 Score=41.55 Aligned_cols=56 Identities=9% Similarity=-0.000 Sum_probs=39.1
Q ss_pred ccEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.++|.|+|+| |.+|..+++.|++.|++|+.+...... ..++.++.+ .+|.++-+..
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~--~vDlvii~vp 78 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPK--DVDVIVFVVP 78 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCT--TCCEEEECSC
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCC--CCCEEEEEeC
Confidence 4589999987 899999999999999987765443211 123333334 6888886633
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.059 Score=45.14 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=55.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCC--------CChhhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRL--------ENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl--------~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
...+++|.|++|-.|+.+++.|.+.|++++. +.... .-..++.++.++..+|+++-+....
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~---------- 81 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAP---------- 81 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHH----------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHH----------
Confidence 3457999999999999999999999998443 22211 0123466666655799998764421
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.+..+++.|.+.+++ +|.+++
T Consensus 82 -----------~~~~~v~ea~~~Gi~~vVi~t~ 103 (294)
T 2yv1_A 82 -----------FAKDAVFEAIDAGIELIVVITE 103 (294)
T ss_dssp -----------HHHHHHHHHHHTTCSEEEECCS
T ss_pred -----------HHHHHHHHHHHCCCCEEEEECC
Confidence 223577788888998 555554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.053 Score=45.62 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=61.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCC---ChhhHH-------------HHHhhcCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLE---NRASLE-------------ADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~---~~~~~~-------------~~~~~~~~d~Vi~~a~~~ 73 (302)
..++||.|+|| |.+|..++..|+.+|+ +|+.+..|-. ...++. +.+. ++|+||-+++..
T Consensus 12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~l~--~aD~Vi~aag~~ 88 (303)
T 2i6t_A 12 KTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDLSASA--HSKVVIFTVNSL 88 (303)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCGGGGT--TCSEEEECCCC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCHHHHC--CCCEEEEcCCCC
Confidence 34579999995 9999999999999998 7777544421 011111 1122 789999999864
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYA 114 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 114 (302)
. ......+....|+...+.+++.+.+... .++++|
T Consensus 89 ~------pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 89 G------SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred C------CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 1 1234456778888888889988887643 344544
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.01 Score=50.77 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=29.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
...+|||+||+|-+|...++.+...|.+|+++..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~ 181 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS 181 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3458999999999999999999999999888433
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.079 Score=44.51 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=29.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.|+||-++| .|.+|..+++.|++.||+|++...+
T Consensus 2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~ 35 (300)
T 3obb_A 2 HMKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLV 35 (300)
T ss_dssp -CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CcCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCC
Confidence 367999998 8999999999999999999985443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0092 Score=49.87 Aligned_cols=55 Identities=16% Similarity=0.076 Sum_probs=41.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
||||.|+| .|.+|..+++.|.+.|++|+++..+....+ +..++++ ++|+||-+..
T Consensus 1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~advvi~~v~ 66 (287)
T 3pdu_A 1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCA--ACDITIAMLA 66 (287)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHH--HCSEEEECCS
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHH--cCCEEEEEcC
Confidence 56899998 899999999999999999998766533222 2344455 6798887754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=50.00 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=41.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|||.|+| .|.+|..+++.|.+.|++|+++..+.... .++.++++ ++|+||-+..
T Consensus 30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~--~aDvVi~~vp 96 (320)
T 4dll_A 30 YARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAAR--DADIVVSMLE 96 (320)
T ss_dssp CCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHT--TCSEEEECCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHh--cCCEEEEECC
Confidence 467999998 79999999999999999998865542211 23344555 7899887654
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.014 Score=48.98 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=40.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhH-----------HHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASL-----------EADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~-----------~~~~~~~~~d~Vi~~a~ 71 (302)
+|||.|+| .|.+|..+++.|.+.|++|+++..+-...+.+ .+++ .+|+||-+..
T Consensus 15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~---~aDvvi~~vp 79 (296)
T 3qha_A 15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVA---AADLIHITVL 79 (296)
T ss_dssp CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHT---TSSEEEECCS
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHH---hCCEEEEECC
Confidence 46899998 79999999999999999999976665433322 2232 2799887654
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=50.40 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=29.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
...+|||+||+|-+|...++.+...|.+|+++..
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~ 192 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN 192 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 3458999999999999999999999999988444
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.017 Score=50.26 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
...+|||+||+|-+|...++.+...|.+|++.
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~ 214 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAV 214 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence 34589999999999999999999999988774
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.01 Score=50.55 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=29.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
...+|||+||+|-+|...++.+...|.+|+++.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~ 172 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTV 172 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 346899999999999999999999999988743
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.013 Score=50.62 Aligned_cols=33 Identities=24% Similarity=0.158 Sum_probs=29.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
...+|||+||+|-+|..+++.+...|.+|+++.
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~ 199 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATA 199 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe
Confidence 345899999999999999999999999988844
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.016 Score=48.80 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=28.8
Q ss_pred cE-EEEE-cCC-----------------cchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LK-FLIY-GRT-----------------GWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~-ilIt-Gat-----------------G~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++ |||| |+| |-.|..++++++++|++|+.+.+.
T Consensus 37 k~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 37 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp CCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 45 9999 667 999999999999999999997664
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.013 Score=46.59 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=38.8
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..+|+|.|+| .|.+|+.++..|.+.|++|+++..+-. .+. ++|+||-+..
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~-------~~~--~aD~vi~av~ 66 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQ-------ATT--LGEIVIMAVP 66 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCC-------CSS--CCSEEEECSC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHH-------Hhc--cCCEEEEcCC
Confidence 3567999999 899999999999999999988765432 334 7899997754
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=47.44 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=46.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|+++.+|+.++..|+..|..|++....- ..+.+.++ +.|+||.+.+..
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---~~L~~~~~--~ADIVI~Avg~p 204 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---KDIGSMTR--SSKIVVVAVGRP 204 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---SCHHHHHH--HSSEEEECSSCT
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---ccHHHhhc--cCCEEEECCCCC
Confidence 356999999999999999999999999998876543 34667777 789999988754
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.052 Score=46.43 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~ 43 (302)
|+||.|.|+ |++|+.+++.|.++ +.++++
T Consensus 1 mikVgIiGa-G~iG~~l~r~L~~~~~~elva 30 (337)
T 1cf2_P 1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIG 30 (337)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSSSEEEEE
T ss_pred CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEE
Confidence 469999999 99999999999884 456655
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0059 Score=51.92 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=31.8
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecCC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGRL 48 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~dl 48 (302)
+|+|+|.|+| .|.+|..+++.|++.| ++|+++..+.
T Consensus 22 ~M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 22 SMMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp TSCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred ccCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 3668999999 8999999999999999 9999877664
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.032 Score=45.90 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=28.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~d 47 (302)
.+|+|.|+| +|.+|+.+++.|.+.|++ |.++..+
T Consensus 9 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~~v~~~~~~ 43 (266)
T 3d1l_A 9 EDTPIVLIG-AGNLATNLAKALYRKGFRIVQVYSRT 43 (266)
T ss_dssp GGCCEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 357999999 599999999999999998 6665443
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0064 Score=51.34 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+||||.|+| .|.+|+.++..|.+.|++|+++..+
T Consensus 2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIAG-AGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCCCcEEEEECC
Confidence 568999999 5999999999999999999886554
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.015 Score=48.61 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=41.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||.|+| .|.+|..+++.|.+.|++|++...+-...+ ++.+++. ++|+||-+..
T Consensus 2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~--~aDvvi~~vp 66 (287)
T 3pef_A 2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVE--SCPVTFAMLA 66 (287)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH--HCSEEEECCS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHh--cCCEEEEEcC
Confidence 6999998 799999999999999999998765533222 3345555 6899987644
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.005 Score=53.41 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCccc-EEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 2 GFPANGSDAGSKPL-KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 2 ~~~~~~~~~~~~~~-~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+++++.+...|+| ||.|+| .|.+|..++..|.+.|++|+++..+
T Consensus 2 ~~~~~~~~~~~m~M~kI~iIG-~G~mG~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 2 STKQHSAKDELLYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp -------CCCCCCEEEEEEEC-CSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccchhhhhhHhhccCeEEEEC-CCHHHHHHHHHHHhCCCEEEEEECC
Confidence 34444444444545 999999 5999999999999999999886544
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.016 Score=48.68 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=42.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCC-----------------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLEN-----------------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~-----------------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|.+.|. +|++..++... .+++.+.+. ++|+||++.+..
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~--~aDivIn~t~~~ 215 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLA--EYDIIINTTSVG 215 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGG--GCSEEEECSCTT
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhc--cCCEEEECCCCC
Confidence 3568999996 7799999999999997 88885544221 123333444 789999998865
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.014 Score=50.48 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC-----------ChhhHHHHHhh-cCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE-----------NRASLEADIAA-VKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~-----------~~~~~~~~~~~-~~~d~Vi~~a~ 71 (302)
+|+|.|+| .|.+|..+++.|++.|++|+++..+-. ...++.++++. ..+|+||-+..
T Consensus 22 ~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp 90 (358)
T 4e21_A 22 SMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVP 90 (358)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred CCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence 47999998 899999999999999999998655421 11234444542 14599987754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.05 Score=45.24 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=28.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++||.|+| +|.+|+.++..|++.|++|+++..+
T Consensus 4 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 4 ITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46899998 5999999999999999999885544
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.025 Score=50.36 Aligned_cols=76 Identities=22% Similarity=0.350 Sum_probs=50.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-C---cEEEeecC------------------C--CChhh-HHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-I---DFTYGSGR------------------L--ENRAS-LEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~---~V~~~~~d------------------l--~~~~~-~~~~~~~~~~d~Vi~ 68 (302)
.+||+|+| .|-||+.+++.|++++ + +|++...+ + .|.++ +..+++ +.|+||+
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~--~~DvVIN 89 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLE--ENDFLID 89 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCC--TTCEEEE
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhc--CCCEEEE
Confidence 46899999 7999999999999864 4 46652221 1 22222 334555 3499999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
++-... ...++++|.+.|+.++=+
T Consensus 90 ~s~~~~---------------------~l~Im~acleaGv~YlDT 113 (480)
T 2ph5_A 90 VSIGIS---------------------SLALIILCNQKGALYINA 113 (480)
T ss_dssp CCSSSC---------------------HHHHHHHHHHHTCEEEES
T ss_pred CCcccc---------------------CHHHHHHHHHcCCCEEEC
Confidence 765431 134899999998765443
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.077 Score=44.77 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=61.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhh----HHH------------------HHhhcCCCEEEEcccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRAS----LEA------------------DIAAVKPTHVFNAAGV 72 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~----~~~------------------~~~~~~~d~Vi~~a~~ 72 (302)
||.|+|| |.+|..++..|+..|. +|+.+..|-...+. +.+ .+. ++|+||-+++.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~--~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMR--GSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT--TCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhC--CCCEEEEeCCC
Confidence 5899997 9999999999988887 67775444211111 111 122 78999999886
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEc
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG--LILINYA 114 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~--~~~v~~S 114 (302)
.. ............|+...+.+++.+.+.. ..++++|
T Consensus 78 ~~-----k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (308)
T 2d4a_B 78 GR-----KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116 (308)
T ss_dssp CC-----CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC-----CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 62 2223445677888888899999988764 3455553
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.025 Score=48.89 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=43.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC------------------CChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL------------------ENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl------------------~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
++|+|+|+ |-+|+.+++.|...|.+|+++..+. .+.+++.+.+. ++|+||++++..
T Consensus 168 ~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~DvVI~~~~~~ 241 (361)
T 1pjc_A 168 GKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA--EADLLIGAVLVP 241 (361)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHH--TCSEEEECCCCT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHc--CCCEEEECCCcC
Confidence 68999998 9999999999999999888854331 12334445555 799999998754
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.038 Score=45.72 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|++|.+|+.++..|+..|..|++....- ..+.+.++ +.|+||...+..
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---~~L~~~~~--~ADIVI~Avg~p 215 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---RDLADHVS--RADLVVVAAGKP 215 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---SCHHHHHH--TCSEEEECCCCT
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---cCHHHHhc--cCCEEEECCCCC
Confidence 456999999999999999999999999998865432 34667777 899999988754
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.025 Score=46.77 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=46.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|+++.+|+.++..|+..|..|++....- ..+.+.++ +.|+||.+.+..
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---~~L~~~~~--~ADIVI~Avg~p 215 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---TDLKSHTT--KADILIVAVGKP 215 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---SSHHHHHT--TCSEEEECCCCT
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---hhHHHhcc--cCCEEEECCCCC
Confidence 456899999999999999999999999998865432 34667777 899999988754
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.029 Score=46.73 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=45.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHH--HHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLE--ADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~--~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++++|+|++|.+|+.++..|+..|..|++....- ..+. +.++ +.|+||.+.+..
T Consensus 164 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T---~~l~l~~~~~--~ADIVI~Avg~p 221 (300)
T 4a26_A 164 AGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT---STEDMIDYLR--TADIVIAAMGQP 221 (300)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS---CHHHHHHHHH--TCSEEEECSCCT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC---CCchhhhhhc--cCCEEEECCCCC
Confidence 456999999999999999999999999988865422 2344 7777 899999988855
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=95.65 E-value=0.049 Score=46.53 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=24.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~ 44 (302)
++||.|.|+ |.||+.+++.|.++ +.+++++
T Consensus 3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI 33 (337)
T 3e5r_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAV 33 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEE
T ss_pred ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEE
Confidence 359999999 99999999999886 4566554
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.022 Score=49.27 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=28.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..+|||+||+|.+|..+++.+...|.+|+++.
T Consensus 164 g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~ 195 (362)
T 2c0c_A 164 GKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTC 195 (362)
T ss_dssp TCEEEETTTTBTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEE
Confidence 45899999999999999999999999988743
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.019 Score=42.69 Aligned_cols=56 Identities=14% Similarity=-0.042 Sum_probs=39.2
Q ss_pred ccEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCC--CC------hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRL--EN------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl--~~------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.++|.|+|++ |-+|..+++.|++.|++|+.+.... .. ..++.++.+ .+|+++-+..
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~--~~Dlvii~vp 79 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPE--KVDMVDVFRN 79 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSS--CCSEEECCSC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCC--CCCEEEEEeC
Confidence 3479999998 8899999999999999977755443 11 122333333 6888886643
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.018 Score=49.49 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=28.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~ 44 (302)
...++||+||+|-+|..+++.+... |.+|+++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~ 202 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGV 202 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEE
Confidence 3458999999989999999999998 9998873
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0078 Score=50.75 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=29.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
++|||.|+| .|.+|..+++.|.+.|++|+++..+
T Consensus 6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECC
Confidence 467999998 7999999999999999999986554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.018 Score=47.87 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=44.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhhHHHHHhh-------------cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRASLEADIAA-------------VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~~~~~~~~-------------~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|.+.|. +|++..++....+.+.+.+.. .++|+||++....
T Consensus 125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~g 198 (281)
T 3o8q_A 125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSAS 198 (281)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCC
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCC
Confidence 3568999996 7799999999999996 888877765444444444332 2678999987654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.016 Score=48.71 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=40.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-----------hhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-----------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-----------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++|||.|+| .|.+|..+++.|.+.|++|+++..+-.. ..+..+.+. ++|+||-+..
T Consensus 3 ~~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~D~vi~~vp 69 (301)
T 3cky_A 3 KSIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAA--ASDIIFTSLP 69 (301)
T ss_dssp -CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHH--HCSEEEECCS
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHh--CCCEEEEECC
Confidence 357999998 7999999999999999999875443111 112334455 6898887754
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.014 Score=47.62 Aligned_cols=55 Identities=9% Similarity=-0.030 Sum_probs=40.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC----cEEEeecCCCChh------------hHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI----DFTYGSGRLENRA------------SLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~----~V~~~~~dl~~~~------------~~~~~~~~~~~d~Vi~~a 70 (302)
|+|||.|+| +|.+|+.+++.|.+.|+ +|++...+-...+ +..+.++ ++|+||-+.
T Consensus 1 M~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVilav 71 (247)
T 3gt0_A 1 MDKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAK--NADILILSI 71 (247)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHH--HCSEEEECS
T ss_pred CCCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHH--hCCEEEEEe
Confidence 457999998 89999999999999998 8988655422111 1223344 689998876
|
| >3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.021 Score=50.93 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-------------------------CCCChhhHHHHHhhcCCCEE
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-------------------------RLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-------------------------dl~~~~~~~~~~~~~~~d~V 66 (302)
+|++||||+| .|.+|..+++.+.+.|++++++.. +..|.+.+.+++++.++|.|
T Consensus 4 m~~~kiLI~g-~g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i 82 (446)
T 3ouz_A 4 MEIKSILIAN-RGEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAI 82 (446)
T ss_dssp TCCCEEEECC-CHHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEE
T ss_pred cccceEEEEC-CCHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEE
Confidence 3456899998 688999999999999999887321 33455677777777789988
Q ss_pred EEc
Q 022112 67 FNA 69 (302)
Q Consensus 67 i~~ 69 (302)
+-.
T Consensus 83 ~p~ 85 (446)
T 3ouz_A 83 FPG 85 (446)
T ss_dssp ECC
T ss_pred EEC
Confidence 743
|
| >2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ... | Back alignment and structure |
|---|
Probab=95.51 E-value=0.019 Score=51.27 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=44.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-------------------------CCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-------------------------RLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-------------------------dl~~~~~~~~~~~~~~~d~Vi 67 (302)
||+||||+|+ |.+|..+++.+.+.|++|+++.. +..|.+.+.+++++.++|.|+
T Consensus 1 m~k~ilI~g~-g~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~ 79 (449)
T 2w70_A 1 MLDKIVIANR-GEIALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIH 79 (449)
T ss_dssp CCSEEEECCC-HHHHHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEeCC-cHHHHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEE
Confidence 4669999995 89999999999999999887322 345566777777777899987
Q ss_pred Ec
Q 022112 68 NA 69 (302)
Q Consensus 68 ~~ 69 (302)
-.
T Consensus 80 ~~ 81 (449)
T 2w70_A 80 PG 81 (449)
T ss_dssp CC
T ss_pred EC
Confidence 54
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.043 Score=46.03 Aligned_cols=81 Identities=12% Similarity=0.033 Sum_probs=54.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-eecCC-----C---ChhhHHHHHhhcC-CCEEEEccccCCCCCcchhhh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-GSGRL-----E---NRASLEADIAAVK-PTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~~~dl-----~---~~~~~~~~~~~~~-~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
..+++|.|++|-.|+.+++.|.+.|++++. +.... . -..++.++.++.. +|+++-+....
T Consensus 13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~---------- 82 (297)
T 2yv2_A 13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAP---------- 82 (297)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGG----------
T ss_pred CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHH----------
Confidence 447999999999999999999999998432 22211 0 1234666665444 89998775432
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.+..+++.|.+.+++ +|.+++
T Consensus 83 -----------~~~~~v~ea~~~Gi~~vVi~t~ 104 (297)
T 2yv2_A 83 -----------FAPDAVYEAVDAGIRLVVVITE 104 (297)
T ss_dssp -----------GHHHHHHHHHHTTCSEEEECCC
T ss_pred -----------HHHHHHHHHHHCCCCEEEEECC
Confidence 123477788888998 555554
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.049 Score=47.55 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=42.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee----------------cCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS----------------GRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~----------------~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
.+++|+|+| +|.+|..+++.+.+.|++|+++. .+..|.+.+.++++ ++|+|..
T Consensus 13 ~~k~IlIlG-~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~--~~dvI~~ 81 (389)
T 3q2o_A 13 PGKTIGIIG-GGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAE--ISDVVTY 81 (389)
T ss_dssp TTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHH--TCSEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHH--hCCEeee
Confidence 456899998 68899999999999999998843 34556777888887 7888743
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.025 Score=49.23 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=44.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC------------------CChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL------------------ENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl------------------~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|+|+|+ |-+|..+++.+...|.+|+++..+. .+.+++.+.+. ++|+||.+++..
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~--~aDvVi~~~~~p 242 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK--RADLVIGAVLVP 242 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH--HCSEEEECCCCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc--CCCEEEECCCcC
Confidence 3468999997 9999999999999999988854331 12344556666 789999988754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.033 Score=47.50 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=29.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
...+|||+||+|-+|..+++.+...|.+|+++..
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~ 182 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG 182 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3468999999999999999999999999888543
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.11 Score=42.33 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.+|+|.|+ |-+|+.+++.|...|. +++++..|
T Consensus 29 ~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 29 SQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCSEEEEECCC
T ss_pred CcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999996 5599999999999996 55565444
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.016 Score=49.63 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=29.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
...+|||+||+|-+|..+++.+...|.+|+++..+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~ 178 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRN 178 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34589999999999999999999999999885443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.027 Score=47.74 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=27.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.||.|+| +|.+|+.|+..++..|++|+++..
T Consensus 7 ~~VaViG-aG~MG~giA~~~a~~G~~V~l~D~ 37 (319)
T 3ado_A 7 GDVLIVG-SGLVGRSWAMLFASGGFRVKLYDI 37 (319)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCCCeEEEEEC
Confidence 3899999 599999999999999999998543
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.013 Score=49.60 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=41.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC--CCh-----------hhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL--ENR-----------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl--~~~-----------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+|||.|+| .|.+|..+++.|.+.|+ +|++...+. ... .+..++++ ++|+||-+....
T Consensus 23 ~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~--~aDvVi~~vp~~ 94 (312)
T 3qsg_A 23 NAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAG--ECDVIFSLVTAQ 94 (312)
T ss_dssp --CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHH--HCSEEEECSCTT
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHh--cCCEEEEecCch
Confidence 357999998 79999999999999999 898876642 111 12344455 689999776543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=95.38 E-value=0.019 Score=48.33 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=29.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
..+|||+||+|.+|..+++.+...|.+|+++..
T Consensus 126 g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~ 158 (302)
T 1iz0_A 126 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS 158 (302)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 458999999999999999999999999888544
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.039 Score=45.97 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=46.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++++|+|++.-+|+.++..|+..|..|++.... ..++.+.++ +.|+||-+.+..
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~---t~~L~~~~~--~ADIVI~Avg~p 219 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK---TAHLDEEVN--KGDILVVATGQP 219 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---CSSHHHHHT--TCSEEEECCCCT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC---cccHHHHhc--cCCEEEECCCCc
Confidence 45699999999999999999999999999886543 345677788 899999988865
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.027 Score=46.67 Aligned_cols=60 Identities=12% Similarity=0.086 Sum_probs=43.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhhHHHHHh-------------hcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRASLEADIA-------------AVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~~~~~~~-------------~~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|.+.|. +|++..++....+.+.+.+. ..++|+||++....
T Consensus 119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~g 192 (272)
T 3pwz_A 119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSAS 192 (272)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGG
T ss_pred cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCC
Confidence 3568999996 7899999999999995 88887666444344433322 13789999986543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.056 Score=45.74 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=46.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC---------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN---------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~---------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..|+|.|+| .|-||+.+++.|...|++|++...+... ..++.+++. ++|+|+.+...+
T Consensus 138 ~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~~Plt 204 (315)
T 3pp8_A 138 EEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLN--QTRVLINLLPNT 204 (315)
T ss_dssp TTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHH--TCSEEEECCCCC
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHh--hCCEEEEecCCc
Confidence 357999998 7999999999999999999997554331 246788888 899998776644
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.054 Score=45.74 Aligned_cols=59 Identities=12% Similarity=0.025 Sum_probs=47.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC---------------C-------CChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR---------------L-------ENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d---------------l-------~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
..++++|+|++.-+|+.+++.|+..|..|++...+ . ++.+++.+.+. +.|+||-+.
T Consensus 176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~--~ADIVIsAt 253 (320)
T 1edz_A 176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSL--DSDVVITGV 253 (320)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHH--HCSEEEECC
T ss_pred CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhc--cCCEEEECC
Confidence 45699999988889999999999999988875333 1 23367888888 889999888
Q ss_pred ccC
Q 022112 71 GVT 73 (302)
Q Consensus 71 ~~~ 73 (302)
+..
T Consensus 254 g~p 256 (320)
T 1edz_A 254 PSE 256 (320)
T ss_dssp CCT
T ss_pred CCC
Confidence 754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.029 Score=47.20 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+++|.|+|+ |.+|..|+..|++.|++|+++..+
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999995 999999999999999999886554
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.015 Score=47.39 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=29.7
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
..+|||.|+| +|.+|..+++.|.+.|++|++...+
T Consensus 17 ~~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~ 51 (245)
T 3dtt_A 17 FQGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRD 51 (245)
T ss_dssp --CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467999997 8999999999999999999886554
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.036 Score=46.90 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=40.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
+|+|.|+| .|.+|+.+++.|.+.|++|+++..+-...+ +..+.+. ++|+||-+..
T Consensus 30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~DvVi~av~ 95 (316)
T 2uyy_A 30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVS--TCDITFACVS 95 (316)
T ss_dssp SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHH--HCSEEEECCS
T ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHh--cCCEEEEeCC
Confidence 47899999 699999999999999999988655432221 2334444 6788887654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.028 Score=41.49 Aligned_cols=78 Identities=10% Similarity=-0.108 Sum_probs=50.0
Q ss_pred ccEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecC--CCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhh
Q 022112 14 PLKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGR--LEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCE 82 (302)
Q Consensus 14 ~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~d--l~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~ 82 (302)
..+|.|+|+| |-+|..+++.|.+.|++|+.+... -.. ..++.++-+ .+|.++-+....
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~--~vDlavi~vp~~--------- 81 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPS--------- 81 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHH---------
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCC--CCCEEEEEeCHH---------
Confidence 3489999998 889999999999999987765444 111 122333333 688877653311
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEc
Q 022112 83 SHKVETIRTNVVGTLTLADVCRDKGLILINYA 114 (302)
Q Consensus 83 ~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~S 114 (302)
.+..+++.|.+.+++.+.+.
T Consensus 82 ------------~~~~v~~~~~~~gi~~i~~~ 101 (140)
T 1iuk_A 82 ------------ALMDHLPEVLALRPGLVWLQ 101 (140)
T ss_dssp ------------HHTTTHHHHHHHCCSCEEEC
T ss_pred ------------HHHHHHHHHHHcCCCEEEEc
Confidence 12235667777788744443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.028 Score=46.68 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=42.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCC------------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLEN------------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~------------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++++|+|+ |.+|+.++..|.+.|. +|+++.++... .+++.+.+. ++|+||++....
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~--~aDiVInaTp~G 186 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLD--EFDIIINTTPAG 186 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGG--GCSEEEECCC--
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhc--CCCEEEECccCC
Confidence 3568999996 8899999999999998 88886555322 233444455 789999986643
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.022 Score=49.12 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=29.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+|||.|+| +|.+|..++..|.+.|++|+++..|
T Consensus 29 ~mkI~VIG-aG~mG~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILG-AGSWGTALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred CCeEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57999999 6999999999999999999986554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 302 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-14 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 5e-14 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-12 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-11 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 5e-08 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-07 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 7e-07 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 9e-06 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-05 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 2e-05 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 0.003 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 69.4 bits (169), Expect = 5e-14
Identities = 43/298 (14%), Positives = 88/298 (29%), Gaps = 44/298 (14%)
Query: 30 LGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89
L + ++ +F + + + A + +P V + A + VD + I
Sbjct: 43 LSDISESNRYNFEHAD--ICDSAEITRIFEQYQPDAVMHLAAESH---VDRSITGPAAFI 97
Query: 90 RTNVVGTLTLADVCRDKG----------LILINYATGCIFEYDSGHPL---GSGIGFKEE 136
TN+VGT L +V R + +T ++ + E
Sbjct: 98 ETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157
Query: 137 DTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNPRNFITKITR--- 188
T S YS +KA + L++ + P I +
Sbjct: 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY-HFPEKLIPLVILNAL 216
Query: 189 YEKVVNIPNSMT-------ILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQY 241
K + I + D + + + + +N + +++
Sbjct: 217 EGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDL 276
Query: 242 IDPNFTWKNFTLEEQAKVIVAPRSNNE----LDASKLKTEF---PELLSIKESLIKYV 292
+ T + VA R ++ +DA K+ E P + + + K V
Sbjct: 277 --LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPL-ETFESGIRKTV 331
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 69.4 bits (169), Expect = 5e-14
Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 31/252 (12%)
Query: 30 LGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89
+ + + F G L + ++L + V+P V+N ++ V T
Sbjct: 46 IYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSH---VAVSFESPEYTA 102
Query: 90 RTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145
+ +GTL L + R GL +T ++ P +E TP + S
Sbjct: 103 DVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQ-------KETTPFYPRSP 155
Query: 146 YSKTKAMVEELLKNFE-----NVCTLRV------RMPISSDLSNPRNFITKITRYEKVVN 194
Y+ K + N+ C + R + I I + +
Sbjct: 156 YAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCL 215
Query: 195 IPN------SMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW 248
+ + + M ++ + S + +EM + +
Sbjct: 216 YLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF 275
Query: 249 KNFTLEEQAKVI 260
+ +EE+ V+
Sbjct: 276 EGTGVEEKGIVV 287
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.1 bits (158), Expect = 1e-12
Identities = 46/316 (14%), Positives = 108/316 (34%), Gaps = 56/316 (17%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT----YGSGRLENRASLEA------------DIA 59
+ LI G G++G L + T + +GR N +
Sbjct: 3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 62
Query: 60 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119
++ +++ A + ++T++TN +GTL + + + G L+ +T ++
Sbjct: 63 YIEVDQIYHLASPAS---PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVY 119
Query: 120 EYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISS 174
HP + P + Y + K + E + + V R+
Sbjct: 120 GDPEVHPQSE--DYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGP 177
Query: 175 --DLSNPR---NFITKITRYEKVVNIPN-----SMTILDELLPISIEMAKRNLTGIWNFT 224
+++ R NFI + + E + + + + +L+ + + N++ N
Sbjct: 178 RMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLG 237
Query: 225 NPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNE-----LDASKLKTEF- 278
NP + E ++ + + +++ + ++ D K K
Sbjct: 238 NPEEHTILEFAQLIKNLVGSG-----------SEIQFLSEAQDDPQKRKPDIKKAKLMLG 286
Query: 279 --PELLSIKESLIKYV 292
P + ++E L K +
Sbjct: 287 WEPV-VPLEEGLNKAI 301
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 61.4 bits (148), Expect = 2e-11
Identities = 32/272 (11%), Positives = 85/272 (31%), Gaps = 13/272 (4%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQS----IDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71
+ I G G +G + + + + + T L + ++ A+ + V+ AA
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA 63
Query: 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSG 130
G + ++ + I N++ + + L+ + CI+ + P+
Sbjct: 64 KVG--GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAES 121
Query: 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPR-NFITKITRY 189
+ T Y+ K +L +++ R + ++L P NF +
Sbjct: 122 --ELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHV 179
Query: 190 EKVVNIPNSMTILDELLPISIE---MAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNF 246
+ + + + R + + + E++ + P
Sbjct: 180 IPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPML 239
Query: 247 TWKNFTLEEQAKVIVAPRSNNELDASKLKTEF 278
+ N + ++ ++ K + F
Sbjct: 240 SHINVGTGVDCTIRELAQTIAKVVGYKGRVVF 271
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 51.0 bits (121), Expect = 5e-08
Identities = 45/322 (13%), Positives = 99/322 (30%), Gaps = 60/322 (18%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQ-----------SIDFTYGSGRLENRASLEAD------- 57
+ L+ G G+IG + A +D +G N A ++AD
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 58 ----------IAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107
+ + A + +VD + TNV GT TL D G
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAES---HVDRSIAGASVFTETNVQGTQTLLQCAVDAG 118
Query: 108 LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-----N 162
+ + + + + + + E S Y+ +KA + + + + +
Sbjct: 119 VGRVVHVS-----TNQVYGSIDSGSWTESSPLEPN-SPYAASKAGSDLVARAYHRTYGLD 172
Query: 163 VCTLRVRMPISSDLSNPR---NFITKITRYEKVVNIPN-----SMTILDELLPISIEMAK 214
V R + F+T + + + D+ +
Sbjct: 173 VRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLA 232
Query: 215 RNLTG-IWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASK 273
G I++ +++ E+ + + +++ + + + LD K
Sbjct: 233 GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDL-----RYSLDGGK 287
Query: 274 LKTEF---PELLSIKESLIKYV 292
++ E P+ +S + L + V
Sbjct: 288 IERELGYRPQ-VSFADGLARTV 308
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 52/315 (16%), Positives = 86/315 (27%), Gaps = 39/315 (12%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQ-------SIDFTYGSGRLENRASL--------EADIAA 60
++ G G+IG +D +G N ++ DIA
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63
Query: 61 VK-----PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILIN--- 112
+ + D + I TN +GT TL + R + +
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 113 ---YATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-----ENVC 164
Y + E GH G G F E N S YS TKA + ++K +
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTAETNYNPS-SPYSSTKAASDLIVKAWVRSFGVKAT 182
Query: 165 TLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFT 224
+ +IT + + I + I
Sbjct: 183 ISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG 242
Query: 225 NPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNE----LDASKLKTEF-- 278
G + + A V R+ ++ +DASKL+ E
Sbjct: 243 RMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGW 302
Query: 279 -PELLSIKESLIKYV 292
P+ E L + +
Sbjct: 303 TPQFTDFSEGLEETI 317
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 7e-07
Identities = 40/173 (23%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 20 YGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79
TG I L + G L + L I VKPT ++N + V
Sbjct: 37 SFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSH---VK 93
Query: 80 WCESHKVETIRTNVVGTLTLADVCRDKGLI----LINYATGCIFEYDSGHPLGSGIGFKE 135
T + VGTL L D + GLI +T ++ P +
Sbjct: 94 ISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQ-------K 146
Query: 136 EDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITR 188
E TP + S Y K ++ NF L I + +PR +TR
Sbjct: 147 ETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTR 199
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.0 bits (102), Expect = 9e-06
Identities = 45/285 (15%), Positives = 88/285 (30%), Gaps = 19/285 (6%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT---YGSGRLENRASLEADIAAVKPTHVFNAAGV 72
K LI G G +G + K + ++++ + N ++ KP V N
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVIN---C 59
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
VD CE + N ++ + + G
Sbjct: 60 AAHTAVDKCEEQYDLAYKINA-------IGPKNLAAAAYSVGAEIVQISTDYVFDGEAKE 112
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKV 192
E S Y KTK E +K + + D +N + + +
Sbjct: 113 PITEFDEVNPQSAYGKTKLEGENFVKALNPKYYIVRTAWLYGDGNNFVKTMINLGKTHDE 172
Query: 193 VNIPN----SMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW 248
+ + + + T +L + +++ G ++ T G+ S + + +
Sbjct: 173 LKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDVKV 232
Query: 249 KNFTLEEQAKVIVAPRSNNELDASKLKTEF-PELLSIKESLIKYV 292
T EE + P+ + L L+ KESL +Y+
Sbjct: 233 TPCTTEEFPRPAKRPK-YSVLRNYMLELTTGDITREWKESLKEYI 276
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.8 bits (102), Expect = 1e-05
Identities = 54/334 (16%), Positives = 86/334 (25%), Gaps = 67/334 (20%)
Query: 12 SKPLKFLIYGRTGWIGG-----LLGKLCQAQSID--FTYGSGRLENRASLE--------- 55
++P +LI G G+IG LL + +D T L+ SL
Sbjct: 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 73
Query: 56 --------ADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107
D V +V + + + TN+ G L + RD
Sbjct: 74 FIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK 133
Query: 108 -LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE----- 161
A+ + G P EDT S Y+ TK + E F
Sbjct: 134 VQSFTYAASSSTYGDHPGLPK-------VEDTIGKPLSPYAVTKYVNELYADVFSRCYGF 186
Query: 162 NVCTLR---VRMPISSDLSNPRNFITKITR---YEKVVNIPNSMTILDELLPIS------ 209
+ LR V I K T V I + I
Sbjct: 187 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 246
Query: 210 ---IEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSN 266
++N G S N++ R + N + + +
Sbjct: 247 LLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHR------EPVYRDFRE 300
Query: 267 NE-----LDASKLKTEF---PELLSIKESLIKYV 292
+ D SK P+ + + +
Sbjct: 301 GDVRHSLADISKAAKLLGYAPK-YDVSAGVALAM 333
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 47/317 (14%), Positives = 94/317 (29%), Gaps = 44/317 (13%)
Query: 12 SKPLKFLIYGRTGWIGG-----LLGKLCQAQSIDFTYGSGRLENRASLEADIA------- 59
S+ LK I G G+I L + + D+ E+ E +
Sbjct: 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMEN 72
Query: 60 --AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY-ATG 116
V + + +S+ + N + + + + R G+ Y ++
Sbjct: 73 CLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSA 132
Query: 117 CIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLR---V 168
CI+ + + + P + K EEL K++ R +
Sbjct: 133 CIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNI 192
Query: 169 RMPISSDLSNPRNFITKITRYEKVVNIPN----------SMTILDELLPISIEMAKRNLT 218
P + R + S T +DE + + + K +
Sbjct: 193 YGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFR 252
Query: 219 GIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEF 278
N + +VS NE+ EM + + + E + + D + +K +
Sbjct: 253 EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNS-------DNNLIKEKL 305
Query: 279 ---PELLSIKESLIKYV 292
P + +KE L
Sbjct: 306 GWAPN-MRLKEGLRITY 321
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.5 bits (83), Expect = 0.003
Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 49/318 (15%)
Query: 16 KFLIYGRTGWIGG-----LLGKLCQAQSIDFTYGSGRLENRASL---------EADIA-- 59
L+ G TG G LL K + + S L + D+A
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61
Query: 60 -----AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYA 114
AV + + V + V T + +G L + R Y
Sbjct: 62 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 121
Query: 115 TGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISS 174
S ++E+TP + S Y K + N+ L I
Sbjct: 122 AST-----SEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILF 176
Query: 175 DLSNPRNFITKITRY------------EKVVNIPN-----SMTILDELLPISIEMAKRNL 217
+ +P I +TR ++ + + N + + M +++
Sbjct: 177 NHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 236
Query: 218 TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTE 277
+ + ++ ++ +++ ++ + + +K +
Sbjct: 237 ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLL--GNPAKAQRV 294
Query: 278 F---PELLSIKESLIKYV 292
P S+ E + V
Sbjct: 295 LGWKPR-TSLDELIRMMV 311
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 36.6 bits (83), Expect = 0.003
Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 40/288 (13%)
Query: 40 DFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTL 99
+F + G + N+ + I P F+ AG + + + NV GTL L
Sbjct: 50 NFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG---QVAMTTSIDNPCMDFEINVGGTLNL 106
Query: 100 ADVCR--DKGLILINYATGCIF---------EYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148
+ R + +I +T ++ E ++ + +E T S Y
Sbjct: 107 LEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGC 166
Query: 149 TKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208
+K ++ + ++ + L + S + R F T + P
Sbjct: 167 SKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPF 226
Query: 209 SIEMAKRNLTGIWNFTNPGVVSHNEILE-----MYRQYIDPNFTWKNFTLEEQAKVI--- 260
+I + + L + + +L E K++
Sbjct: 227 TI-SGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDY 285
Query: 261 --------VAPRSNNE-----LDASKLKTEF---PELLSIKESLIKYV 292
P ++ D K+ P+ +S K+ + K
Sbjct: 286 CNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPK-VSAKDGVQKMY 332
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 302 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.92 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.92 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.91 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.91 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.9 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.83 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.71 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.71 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.7 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.69 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.69 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.69 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.69 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.68 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.68 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.67 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.67 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.67 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.66 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.66 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.65 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.65 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.65 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.64 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.64 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.64 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.64 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.64 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.63 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.63 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.63 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.63 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.62 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.62 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.62 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.62 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.61 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.6 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.6 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.6 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.58 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.57 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.57 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.57 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.57 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.57 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.56 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.56 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.56 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.56 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.56 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.54 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.52 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.5 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.49 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.49 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.48 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.45 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.45 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.42 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.42 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.41 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.39 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.32 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.29 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.25 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.24 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.21 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.2 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.15 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.04 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.86 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.23 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.13 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 98.13 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.12 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.12 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 98.01 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.0 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.95 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.9 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.88 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.79 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.79 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.74 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.69 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.68 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.67 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.66 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.66 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.65 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.64 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.64 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.59 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.58 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.57 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.55 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.49 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 97.49 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.47 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.44 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.43 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.4 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.26 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.22 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.16 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.15 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.07 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.04 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.99 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.98 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.96 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.95 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.91 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.8 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.8 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.8 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.71 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 96.64 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 96.55 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.42 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.42 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 96.38 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.34 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.33 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 96.3 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.27 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.26 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.26 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.21 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 96.16 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.11 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.06 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.05 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.86 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.71 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.71 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.71 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.7 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.7 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.68 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.63 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 95.62 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.6 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 95.51 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.48 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.45 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.39 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.36 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.31 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.3 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.28 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.26 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 95.15 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.14 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.12 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.11 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.11 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.95 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 94.95 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.93 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.91 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.91 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 94.87 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 94.79 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.74 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.72 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.67 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 94.65 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.63 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.49 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.45 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.39 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 94.38 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.37 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 94.32 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.22 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.18 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.15 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 94.12 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.12 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.07 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.03 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.97 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.96 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.93 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.91 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.87 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.85 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 93.85 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.53 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.52 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.51 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.5 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.44 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 93.39 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.36 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.3 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.15 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.13 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.11 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 93.04 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.0 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 92.97 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.8 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.64 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 92.6 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.58 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.54 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 92.53 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.41 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.36 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 92.31 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 92.23 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 92.18 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.15 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 91.9 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 91.81 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.65 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 91.62 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 91.37 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 91.3 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 91.18 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 91.18 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 90.86 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.84 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.68 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 90.59 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 90.52 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.49 | |
| d2vapa1 | 209 | Cell-division protein FtsZ {Archaeon Methanococcus | 90.48 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 90.36 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.34 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 90.3 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.24 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 90.04 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.0 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.92 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.78 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 89.14 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 88.95 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 88.79 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 88.67 | |
| d1pn3a_ | 391 | TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi | 88.62 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.62 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 88.61 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 88.59 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 88.4 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 88.24 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.24 | |
| d1iu8a_ | 206 | Pyrrolidone carboxyl peptidase (pyroglutamate amin | 88.21 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.95 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 87.71 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.58 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.5 | |
| d1mvoa_ | 121 | PhoP receiver domain {Bacillus subtilis [TaxId: 14 | 87.24 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 87.06 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.02 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 86.33 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 86.32 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 85.66 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 85.61 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 85.52 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 85.26 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 85.03 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 85.01 | |
| d2b4aa1 | 118 | Hypothetical protein BH3024 {Bacillus halodurans [ | 84.86 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.8 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 84.79 | |
| d1iofa_ | 208 | Pyrrolidone carboxyl peptidase (pyroglutamate amin | 84.68 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.26 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 84.23 | |
| d1a2za_ | 220 | Pyrrolidone carboxyl peptidase (pyroglutamate amin | 84.11 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 84.1 | |
| d1iira_ | 401 | UDP-glucosyltransferase GtfB {Amycolatopsis orient | 83.94 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 83.87 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 83.78 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 83.67 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 83.32 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.95 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 82.73 | |
| d2a9va1 | 196 | GMP synthase subunit A, GuaAA {Archaeon Thermoplas | 82.64 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 82.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 82.51 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 82.46 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 82.45 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 82.13 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 81.92 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 81.01 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 80.97 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 80.83 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 80.73 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.71 | |
| d2j9ga2 | 114 | Biotin carboxylase (BC), N-terminal domain {Escher | 80.58 | |
| d1ofua1 | 198 | Cell-division protein FtsZ {Pseudomonas aeruginosa | 80.33 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 80.02 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-44 Score=308.57 Aligned_cols=272 Identities=16% Similarity=0.202 Sum_probs=213.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC------------------CCChhhHHHHHhhcCCCEEEEccccCCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR------------------LENRASLEADIAAVKPTHVFNAAGVTGRP 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d------------------l~~~~~~~~~~~~~~~d~Vi~~a~~~~~~ 76 (302)
+||||||||||||++|+++|+++|++|+++... +.+.+.++.++. ++|+|||+|+..
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~VihlAa~~--- 76 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPA--- 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCC--CCSEEEECCSCC---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHc--CCCEEEECcccC---
Confidence 689999999999999999999999999985321 111222222232 799999999987
Q ss_pred CcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHH
Q 022112 77 NVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEEL 156 (302)
Q Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~ 156 (302)
+...+..++...+++|+.++.+++++|++.++|+|++||++||+.....|.. +..+.|.++..|. ++|+.+|.++|.+
T Consensus 77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~-e~~~~~~~~~~p~-~~Y~~sK~~~E~~ 154 (312)
T d2b69a1 77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQS-EDYWGHVNPIGPR-ACYDEGKRVAETM 154 (312)
T ss_dssp SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBC-TTCCCBCCSSSTT-HHHHHHHHHHHHH
T ss_pred CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCC-ccccCCCCCCCCc-cHHHHHHHHHHHH
Confidence 3555667889999999999999999999999999999999999987655543 2334455555544 8999999999999
Q ss_pred HHhhcC-----ceEEeeecccCCCCCCc-----hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcCCCCeE
Q 022112 157 LKNFEN-----VCTLRVRMPISSDLSNP-----RNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRNLTGIW 221 (302)
Q Consensus 157 ~~~~~~-----~~~lR~~~v~g~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~~~~~~ 221 (302)
++.+.+ .+++|++.+|||+.... +.++.+++.+.++. ...++|+|++|+|++++.++++...++|
T Consensus 155 ~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~~~~~ 234 (312)
T d2b69a1 155 CYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPV 234 (312)
T ss_dssp HHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSCCSCE
T ss_pred HHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhccCCce
Confidence 977643 38999999999865332 34667777777643 2467999999999999999998888999
Q ss_pred EecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhh
Q 022112 222 NFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 222 ~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~ 299 (302)
|+++++.+++.|+++.+++.+|.+.++..... .........+|++|+++.|| +..+|+++| +++++|++++
T Consensus 235 n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I-~~~i~w~~~~ 307 (312)
T d2b69a1 235 NLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE------AQDDPQKRKPDIKKAKLMLGWEPVVPLEEGL-NKAIHYFRKE 307 (312)
T ss_dssp EESCCCEEEHHHHHHHHHHHHTCCCCEEEECC------CTTCCCCCCBCCHHHHHHHCCCCCSCHHHHH-HHHHHHHHHH
T ss_pred EecCCcccchhhHHHHHHHHhCCCCceEECCC------CCCCCCeeeECHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHH
Confidence 99999999999999999999998765322111 11111245789999999999 556999999 9999998776
Q ss_pred c
Q 022112 300 T 300 (302)
Q Consensus 300 ~ 300 (302)
.
T Consensus 308 ~ 308 (312)
T d2b69a1 308 L 308 (312)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-43 Score=307.07 Aligned_cols=270 Identities=17% Similarity=0.151 Sum_probs=212.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhcCCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~~~d~ 65 (302)
+++||||||||||++|+++|+++|++|++ +.+|++|.+++.+++...++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 57999999999999999999999999876 4678999999999999889999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|||+|+.. ++..+..++..++++|+.|+.+|+++|++.++ +||++||++|||... ..|++|++++.|
T Consensus 82 v~h~aa~~---~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~------~~~~~E~~~~~P 152 (357)
T d1db3a_ 82 VYNLGAMS---HVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ------EIPQKETTPFYP 152 (357)
T ss_dssp EEECCCCC---TTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC------SSSBCTTSCCCC
T ss_pred EEEeeccc---ccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCC------CCCcCCCCCCCC
Confidence 99999987 45667789999999999999999999998764 499999999998654 567889988876
Q ss_pred CCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc--h-h---hHHHHhccccc------ccccCCcccHhh
Q 022112 142 VGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP--R-N---FITKITRYEKV------VNIPNSMTILDE 204 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~--~-~---~~~~~~~~~~~------~~~~~~~i~v~D 204 (302)
. ++|+.+|..+|++++.+.+ .+++||+++|||..... . . ++..+..+... ..+.++|+|++|
T Consensus 153 ~-~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D 231 (357)
T d1db3a_ 153 R-SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKD 231 (357)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHH
T ss_pred C-ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeech
Confidence 5 8999999999999877643 39999999999854221 1 1 23333344331 125678999999
Q ss_pred HHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccccccccc------------------ceee---ecC
Q 022112 205 LLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQ------------------AKVI---VAP 263 (302)
Q Consensus 205 ~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~------------------~~~~---~~~ 263 (302)
+|++++.++++..+++||+++++.+|+.|+++.+.+.+|....+........ .... ...
T Consensus 232 ~~~a~~~~~~~~~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (357)
T d1db3a_ 232 YVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYF 311 (357)
T ss_dssp HHHHHHHTTSSSSCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGC
T ss_pred HHHHHHHHHhCCCCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccccC
Confidence 9999999999888899999999999999999999999985432211000000 0000 000
Q ss_pred C----CCCccCchhHHHhCC--CcchHHHHHHHHHhhc
Q 022112 264 R----SNNELDASKLKTEFP--ELLSIKESLIKYVFEP 295 (302)
Q Consensus 264 ~----~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~ 295 (302)
| ....+|++|+++.|| +..+|+|+| ++++++
T Consensus 312 r~~~~~~~~~d~skakk~LGw~P~~sl~egI-~~~I~~ 348 (357)
T d1db3a_ 312 RPAEVETLLGDPTKAHEKLGWKPEITLREMV-SEMVAN 348 (357)
T ss_dssp CCCC-CCCCBCCHHHHHHHCCCCCSCHHHHH-HHHHHH
T ss_pred CCccccccccCHHHHHHHHCCCcCCCHHHHH-HHHHHH
Confidence 1 234679999999999 445999999 777543
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=5.8e-43 Score=301.66 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=218.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
|||||||||||||++|++.|+++|++|.+ +.+|+.+......... .+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhcccc--ccc
Confidence 79999999999999999999999986532 5677777777776666 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
.|+|+|+.. .......++...+++|+.++.+++++|++.+++ +|++||+++|+... ..+++|+++..|.
T Consensus 79 ~vi~~a~~~---~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~------~~~~~E~~~~~p~- 148 (322)
T d1r6da_ 79 AIVHFAAES---HVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSID------SGSWTESSPLEPN- 148 (322)
T ss_dssp EEEECCSCC---CHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCS------SSCBCTTSCCCCC-
T ss_pred eEEeecccc---cccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCC------CCCCCCCCCCCCC-
Confidence 999999977 466677788899999999999999999999875 99999999999776 6678899888766
Q ss_pred CchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC---chhhHHHHhcccccc-----cccCCcccHhhHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN---PRNFITKITRYEKVV-----NIPNSMTILDELLPISI 210 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~ 210 (302)
+.|+.+|..+|.+++.+. +.+++||+.+||+.... .+.|+.++..+.++. .+.++|+|++|+|+++.
T Consensus 149 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~ 228 (322)
T d1r6da_ 149 SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIA 228 (322)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHH
Confidence 899999999999987764 34899999999986532 234566677776532 35678999999999999
Q ss_pred HHHhcCC-CCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHH
Q 022112 211 EMAKRNL-TGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKES 287 (302)
Q Consensus 211 ~~~~~~~-~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~ 287 (302)
.+++++. +++||+++++.+++.|+++.+.+.+|.+......... .........+|++|+++.|| +..+++|+
T Consensus 229 ~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~lg~~p~~~~eeg 303 (322)
T d1r6da_ 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVAD-----RKGHDLRYSLDGGKIERELGYRPQVSFADG 303 (322)
T ss_dssp HHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECC-----CTTCCCBCCBCCHHHHHHHCCCCCSCHHHH
T ss_pred HHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCC-----CCCCCceeeeCHHHHHHHHCCCCCCCHHHH
Confidence 9999864 4699999999999999999999999988653221111 11111235689999999999 45699999
Q ss_pred HHHHHhhchhhhc
Q 022112 288 LIKYVFEPNKKTT 300 (302)
Q Consensus 288 i~~~~~~~~~~~~ 300 (302)
| +++++|+++|.
T Consensus 304 I-~~~i~w~~~n~ 315 (322)
T d1r6da_ 304 L-ARTVRWYRENR 315 (322)
T ss_dssp H-HHHHHHHHHCH
T ss_pred H-HHHHHHHHHhH
Confidence 9 99999998864
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.2e-42 Score=302.38 Aligned_cols=280 Identities=15% Similarity=0.117 Sum_probs=216.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|||||||||||||++|+++|+++|++|++ +.+|++|.+.+.++++..++|+||||
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 79999999999999999999999998654 45899999999999998899999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----------eEEEEcCCccccCCCCCCCCC---CC-CCCC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----------ILINYATGCIFEYDSGHPLGS---GI-GFKE 135 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----------~~v~~SS~~vy~~~~~~~~~~---~~-~~~e 135 (302)
||.. ++..+..+|..++++|+.++.+++++|++.++ ++|++||+.|||.....+..+ .. ...|
T Consensus 81 Aa~~---~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 81 AAES---HVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp CSCC---CHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred cccc---chhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 9987 46677788999999999999999999987642 699999999999765433211 12 2344
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCC---chhhHHHHhcccccc-----cccCCcccH
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSN---PRNFITKITRYEKVV-----NIPNSMTIL 202 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~-----~~~~~~i~v 202 (302)
.++..|. +.||.+|.++|.+++.+. +.+++|++.+|||.... .+.++.+++.+.++. .+.++|+|+
T Consensus 158 ~~~~~p~-s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v 236 (361)
T d1kewa_ 158 TTAYAPS-SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236 (361)
T ss_dssp TSCCCCC-SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEETTSCCEEEEEEH
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEH
Confidence 4555444 899999999999997753 33899999999986532 245677777777632 256789999
Q ss_pred hhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCcccc-cccccc-ceeeecCCCCCccCchhHHHhCC
Q 022112 203 DELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN-FTLEEQ-AKVIVAPRSNNELDASKLKTEFP 279 (302)
Q Consensus 203 ~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~-~~~~~~-~~~~~~~~~~~~~d~~k~~~~lg 279 (302)
+|+|+++..++++. .+++||+++++.+++.|+++.+.+.++....... ...... ....+.......+|++|++++||
T Consensus 237 ~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (361)
T d1kewa_ 237 EDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELG 316 (361)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHHC
Confidence 99999999999875 4569999999999999999999988764432110 000000 00111111345789999999999
Q ss_pred --CcchHHHHHHHHHhhchhhh
Q 022112 280 --ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 280 --~~~~~~e~i~~~~~~~~~~~ 299 (302)
+..+++|+| +++++|.+++
T Consensus 317 w~P~~~l~e~i-~~ti~w~~~n 337 (361)
T d1kewa_ 317 WKPLETFESGI-RKTVEWYLAN 337 (361)
T ss_dssp CCCSCCHHHHH-HHHHHHHHHC
T ss_pred CCCCCCHHHHH-HHHHHHHHHh
Confidence 457999999 9999987665
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-42 Score=296.74 Aligned_cols=270 Identities=18% Similarity=0.191 Sum_probs=213.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|||||||||||||++|++.|+++|++|++ +.+|++|.+.+.++++..++|+|||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 79999999999999999999999999987 57899999999999998899999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
||.. .+..+..++...+++|+.++.++|++|++.+++ +|++||.++|+... ..+..|+++...+.++|+.
T Consensus 81 Aa~~---~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~------~~~~~e~~~~~~p~~~Y~~ 151 (338)
T d1udca_ 81 AGLK---AVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQP------KIPYVESFPTGTPQSPYGK 151 (338)
T ss_dssp CSCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCC------SSSBCTTSCCCCCSSHHHH
T ss_pred CCcc---chhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccc------ccccccccccCCCcchHHH
Confidence 9977 466677789999999999999999999999986 99999999998765 4445566655445589999
Q ss_pred hHHHHHHHHHhhcC------ceEEeeecccCCCCCC---------chhhHHHH----hccccc------------ccccC
Q 022112 149 TKAMVEELLKNFEN------VCTLRVRMPISSDLSN---------PRNFITKI----TRYEKV------------VNIPN 197 (302)
Q Consensus 149 ~K~~~E~~~~~~~~------~~~lR~~~v~g~~~~~---------~~~~~~~~----~~~~~~------------~~~~~ 197 (302)
+|..+|.++.++.. .+++|++++||+.... ...++..+ ...... ..+.+
T Consensus 152 sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~r 231 (338)
T d1udca_ 152 SKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVR 231 (338)
T ss_dssp HHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEE
T ss_pred HHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCcee
Confidence 99999998865321 2789999999975321 12233333 222221 12357
Q ss_pred CcccHhhHHHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchh
Q 022112 198 SMTILDELLPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASK 273 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 273 (302)
||+|++|++.++..+... ...++||+++++.+|+.|+++.+.+.+|.+......+ ..........+|++|
T Consensus 232 d~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~------~~~~~~~~~~~d~~k 305 (338)
T d1udca_ 232 DYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP------RREGDLPAYWADASK 305 (338)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEEC------CCTTCCSBCCBCCHH
T ss_pred eEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECC------CCCCCCCEeeECHHH
Confidence 899999999988876654 2335899999999999999999999999876532111 111122345789999
Q ss_pred HHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 274 LKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 274 ~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
+++.|| +..+++|+| +++++|.++++
T Consensus 306 ~~~~lgwkp~~~l~egi-~~ti~w~~~~~ 333 (338)
T d1udca_ 306 ADRELNWRVTRTLDEMA-QDTWHWQSRHP 333 (338)
T ss_dssp HHHHHCCCCCCCHHHHH-HHHHHHHHHCT
T ss_pred HHHHHCCCcCCCHHHHH-HHHHHHHHhch
Confidence 999999 456999999 99999998876
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=5.8e-41 Score=283.30 Aligned_cols=271 Identities=20% Similarity=0.187 Sum_probs=230.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe---ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG---SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIR 90 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~---~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~ 90 (302)
.|||||||||||||++|+++|.++||+|+++ ..|+.|.+++.++++..++|+|||+|+.. ....+...+.....
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~~---~~~~~~~~~~~~~~ 77 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT---AVDKCEEQYDLAYK 77 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCCC---CHHHHHHCHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeecccc---ccccccccchhhcc
Confidence 3899999999999999999999999999995 45789999999999988999999999987 56777788899999
Q ss_pred HhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-cCceEEeee
Q 022112 91 TNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLRVR 169 (302)
Q Consensus 91 ~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~~~~~lR~~ 169 (302)
.|+.....+++.++.....+++.||+.+|+... ..++.|.+++.+. ..|+.+|...|.+++.+ .+..++|++
T Consensus 78 ~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~------~~~~~e~~~~~~~-~~~~~~k~~~e~~~~~~~~~~~i~R~~ 150 (281)
T d1vl0a_ 78 INAIGPKNLAAAAYSVGAEIVQISTDYVFDGEA------KEPITEFDEVNPQ-SAYGKTKLEGENFVKALNPKYYIVRTA 150 (281)
T ss_dssp HHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCC------SSCBCTTSCCCCC-SHHHHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred cccccccccccccccccccccccccceeeeccc------cccccccccccch-hhhhhhhhHHHHHHHHhCCCcccccee
Confidence 999999999999999988899999999998776 5677888888766 89999999999999775 566999999
Q ss_pred cccCCCCCCchhhHHHHhccccc---ccccCCcccHhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCC
Q 022112 170 MPISSDLSNPRNFITKITRYEKV---VNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNF 246 (302)
Q Consensus 170 ~v~g~~~~~~~~~~~~~~~~~~~---~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~ 246 (302)
++||++......++..+..+... .+..++++|++|+++++..++++...|+||+++++.+|+.|+++.+++.+|.+.
T Consensus 151 ~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~g~~~~~~~~~~s~~e~~~~i~~~~g~~~ 230 (281)
T d1vl0a_ 151 WLYGDGNNFVKTMINLGKTHDELKVVHDQVGTPTSTVDLARVVLKVIDEKNYGTFHCTCKGICSWYDFAVEIFRLTGIDV 230 (281)
T ss_dssp SEESSSSCHHHHHHHHHHHCSEEEEESSCEECCEEHHHHHHHHHHHHHHTCCEEEECCCBSCEEHHHHHHHHHHHHCCCC
T ss_pred EEeCCCcccccchhhhhccCCceeecCCceeccchhhhhhhhhhhhhhhcccCceeEeCCCccchHHHHHHHHHHhCCCc
Confidence 99998654445566666666542 246789999999999999999998889999999999999999999999999987
Q ss_pred ccccccccccceeeecCCC-CCccCchhHHHhCC-CcchHHHHHHHHHhhchh
Q 022112 247 TWKNFTLEEQAKVIVAPRS-NNELDASKLKTEFP-ELLSIKESLIKYVFEPNK 297 (302)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~ 297 (302)
++..++.... ...+.|+ ++++|++|+++.|| .+++|+|+| +++++++|
T Consensus 231 ~i~~i~~~~~--~~~a~rp~~~~ld~~k~~~~~g~~~~~~~~~l-~~~l~~l~ 280 (281)
T d1vl0a_ 231 KVTPCTTEEF--PRPAKRPKYSVLRNYMLELTTGDITREWKESL-KEYIDLLQ 280 (281)
T ss_dssp EEEEECSTTS--CCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHH-HHHHHHHT
T ss_pred eEEeccHHHc--CCcCCCccccccCHHHHHHHhCCCCCCHHHHH-HHHHHHhc
Confidence 7654433222 2234453 55799999999999 777999999 99999886
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.9e-41 Score=294.20 Aligned_cols=278 Identities=16% Similarity=0.139 Sum_probs=215.4
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+.+++|||||||||||||++|+++|+++||+|++ ..+|+.+.+.+...++ ++|+|||+|+
T Consensus 11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~ 88 (363)
T d2c5aa1 11 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAA 88 (363)
T ss_dssp CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeeccc
Confidence 4668899999999999999999999999999987 4577888888888887 8999999998
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCC-CCCCCCCCCCCCCchhhh
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGI-GFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~-~~~e~~~~~~~~~~Y~~~ 149 (302)
... ........+......|+.++.+++++|++.+++ +|++||..+|+.....+..++. ...|..+..|. ++|+.+
T Consensus 89 ~~~--~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~-~~Yg~s 165 (363)
T d2c5aa1 89 DMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQ-DAFGLE 165 (363)
T ss_dssp CCC--CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCS-SHHHHH
T ss_pred ccc--cccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCC-CHHHHH
Confidence 763 233345678889999999999999999999986 9999999999977654432222 23333444444 899999
Q ss_pred HHHHHHHHHhhc-----CceEEeeecccCCCCCCc---hhh-----HHHHhcccccc-----cccCCcccHhhHHHHHHH
Q 022112 150 KAMVEELLKNFE-----NVCTLRVRMPISSDLSNP---RNF-----ITKITRYEKVV-----NIPNSMTILDELLPISIE 211 (302)
Q Consensus 150 K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~---~~~-----~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~ 211 (302)
|.++|++++.+. +.+++|++.+||++.... ..+ ........... .+.++|+|++|++++++.
T Consensus 166 K~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~ 245 (363)
T d2c5aa1 166 KLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 245 (363)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHHHHHHH
Confidence 999999987754 339999999999864221 111 11222222211 257799999999999999
Q ss_pred HHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHH
Q 022112 212 MAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLI 289 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~ 289 (302)
+++...+++||+++++.+|+.|+++.+.+.+|.+.++...+. +.......+|++|+++.|| +..+|+|+|
T Consensus 246 ~~~~~~~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~-------~~~~~~~~~d~ska~~~LGw~p~~sleegi- 317 (363)
T d2c5aa1 246 LTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPG-------PEGVRGRNSDNNLIKEKLGWAPNMRLKEGL- 317 (363)
T ss_dssp HHHSSCCSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECC-------CCCCSBCEECCHHHHHHHSCCCCCCHHHHH-
T ss_pred HHhCCCCCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCC-------CCCccccccCHHHHHHHhCCCCCCCHHHHH-
Confidence 999888899999999999999999999999998866432211 1111234689999999999 446999999
Q ss_pred HHHhhchhhhc
Q 022112 290 KYVFEPNKKTT 300 (302)
Q Consensus 290 ~~~~~~~~~~~ 300 (302)
+++++|++++.
T Consensus 318 ~~ti~w~~~~~ 328 (363)
T d2c5aa1 318 RITYFWIKEQI 328 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88999887653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=7.4e-40 Score=284.83 Aligned_cols=276 Identities=17% Similarity=0.148 Sum_probs=217.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
.||||||||||||||++|+++|+++|++|.+ +.+|+.|.+.+..++. .++.|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~--~~~~v~ 78 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAA--KADAIV 78 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHT--TCSEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHh--hhhhhh
Confidence 3789999999999999999999999988654 4588999999999988 899999
Q ss_pred EccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCC------CCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG------HPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~------~~~~~~~~~~e~~~~~~ 141 (302)
|+|+.. ....+..++...+++|+.++.+++++|+..+.++|++||+.+||.... .+......+.|+++..|
T Consensus 79 ~~a~~~---~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p 155 (346)
T d1oc2a_ 79 HYAAES---HNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNP 155 (346)
T ss_dssp ECCSCC---CHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCC
T ss_pred hhhhcc---cccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCC
Confidence 999987 466677889999999999999999999999999999999999985321 11112455677777766
Q ss_pred CCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCch---hhHHHHhcccccc-----cccCCcccHhhHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNPR---NFITKITRYEKVV-----NIPNSMTILDELLPI 208 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~~---~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~ 208 (302)
. +.||.+|.++|.+++.+.+ .+++||+.+|||...... .++..+..+.... .+.++|+|++|+|++
T Consensus 156 ~-s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a 234 (346)
T d1oc2a_ 156 S-SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTG 234 (346)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHH
Confidence 6 8999999999999877643 399999999998653332 3455555665432 256789999999999
Q ss_pred HHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCCCc---chH
Q 022112 209 SIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPEL---LSI 284 (302)
Q Consensus 209 ~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~---~~~ 284 (302)
++.+++++ .++.||+++++..++.++++.+.+.++.+.....+... .........+|++|++++|||. +++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~k~~~~LGw~P~~t~l 309 (346)
T d1oc2a_ 235 VWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTD-----RAGHDLRYAIDASKLRDELGWTPQFTDF 309 (346)
T ss_dssp HHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECC-----CTTCCCBCCBCCHHHHHHHCCCCSCCCH
T ss_pred HHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCC-----CCCCCceeeeCHHHHHHHHCCCCcCCCH
Confidence 99988875 45699999999999999999999999977543322111 0111123468999999999932 379
Q ss_pred HHHHHHHHhhchhhhc
Q 022112 285 KESLIKYVFEPNKKTT 300 (302)
Q Consensus 285 ~e~i~~~~~~~~~~~~ 300 (302)
+|+| +++++|+++|.
T Consensus 310 ~e~i-~~ti~w~~~n~ 324 (346)
T d1oc2a_ 310 SEGL-EETIQWYTDNQ 324 (346)
T ss_dssp HHHH-HHHHHHHHHTH
T ss_pred HHHH-HHHHHHHHHHH
Confidence 9999 99999887753
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-39 Score=282.61 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=211.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------------eecCCCChhhHHHHHhhc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------------GSGRLENRASLEADIAAV 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------------~~~dl~~~~~~~~~~~~~ 61 (302)
|.+||||||||||||++|+++|+++|++|++ +.+|++|.+.+.+.+...
T Consensus 1 M~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~ 80 (346)
T d1ek6a_ 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence 4468999999999999999999999999976 457999999999999988
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
++++|+|+||.. ++..+..+|...++.|+.++.+++++|++.+++ ++++||+.+|+.... ....++....
T Consensus 81 ~~~~i~h~Aa~~---~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~------~~~~~~~~~~ 151 (346)
T d1ek6a_ 81 SFMAVIHFAGLK---AVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQY------LPLDEAHPTG 151 (346)
T ss_dssp CEEEEEECCSCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSS------SSBCTTSCCC
T ss_pred cccccccccccc---CcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeecccc------cccccccccc
Confidence 999999999987 467777889999999999999999999999986 899999999987652 2222333333
Q ss_pred CCCCchhhhHHHHHHHHHhhcC------ceEEeeecccCCCCCC---------chhhHHHHh----ccccc---------
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN------VCTLRVRMPISSDLSN---------PRNFITKIT----RYEKV--------- 192 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~------~~~lR~~~v~g~~~~~---------~~~~~~~~~----~~~~~--------- 192 (302)
.+.++|+.+|..+|+.+.++.+ .+++|++.+||+.... ...++..+. .....
T Consensus 152 ~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~ 231 (346)
T d1ek6a_ 152 GCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYD 231 (346)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSS
T ss_pred ccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCccc
Confidence 3448999999999998866422 2889999999975321 122333322 11111
Q ss_pred ---ccccCCcccHhhHHHHHHHHHhc----CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCC
Q 022112 193 ---VNIPNSMTILDELLPISIEMAKR----NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRS 265 (302)
Q Consensus 193 ---~~~~~~~i~v~D~a~~~~~~~~~----~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 265 (302)
..+.+||+|++|+|.++..++.. ...++||+++++.+++.|+++.+.+.+|.+.+....+.. .....
T Consensus 232 ~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~~------~~e~~ 305 (346)
T d1ek6a_ 232 TEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARR------EGDVA 305 (346)
T ss_dssp SSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECCC------TTCCS
T ss_pred CCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCCC------CCCCC
Confidence 12357899999999999887654 233589999999999999999999999987654221111 11112
Q ss_pred CCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhcC
Q 022112 266 NNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 266 ~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~~ 301 (302)
...+|++|+++.|| +..+++|+| +++++|+++|+.
T Consensus 306 ~~~~d~~k~~~~lgw~p~~slee~I-~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 306 ACYANPSLAQEELGWTAALGLDRMC-EDLWRWQKQNPS 342 (346)
T ss_dssp EECBCCHHHHHTTCCCCCCCHHHHH-HHHHHHHHHCTT
T ss_pred EeeECHHHHHHHHCCCcCCCHHHHH-HHHHHHHHhCHh
Confidence 34689999999999 346999999 999999999873
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-39 Score=282.13 Aligned_cols=282 Identities=13% Similarity=0.099 Sum_probs=213.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
|||||||||||||++|+++|+++|+ +|++ +.+|+++.+++.+.+.+ ++|+|||+|+..
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~-~~d~Vih~a~~~- 78 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK-KCDVVLPLVAIA- 78 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH-HCSEEEECBCCC-
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh-CCCccccccccc-
Confidence 7999999999999999999999995 6776 57888887766654333 799999999987
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVE 154 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E 154 (302)
.......++...+.+|+.++.+++++|.+.+.++++.||+.+|+........+..+...+.+...|...|+.+|..+|
T Consensus 79 --~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E 156 (342)
T d2blla1 79 --TPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLD 156 (342)
T ss_dssp --CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHH
T ss_pred --cccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcccchh
Confidence 466677788899999999999999999999999999999999997764333211122222233334478999999999
Q ss_pred HHHHhhc-----CceEEeeecccCCCCCCc-----------hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHH
Q 022112 155 ELLKNFE-----NVCTLRVRMPISSDLSNP-----------RNFITKITRYEKVV-----NIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 155 ~~~~~~~-----~~~~lR~~~v~g~~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~ 213 (302)
++++.+. +.+++|++.+||+..... ..|+.+++.+.++. .+.++|+|++|+|+++..++
T Consensus 157 ~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~ 236 (342)
T d2blla1 157 RVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRII 236 (342)
T ss_dssp HHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHH
T ss_pred hhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeeh
Confidence 9997764 348999999999753211 24667777777643 35778999999999999999
Q ss_pred hcC----CCCeEEecCCC-ccCHHHHHHHHHhhcCCCCcccccccccccee-----eec----CCCCCccCchhHHHhCC
Q 022112 214 KRN----LTGIWNFTNPG-VVSHNEILEMYRQYIDPNFTWKNFTLEEQAKV-----IVA----PRSNNELDASKLKTEFP 279 (302)
Q Consensus 214 ~~~----~~~~~~~~~~~-~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~----~~~~~~~d~~k~~~~lg 279 (302)
+++ .+++||+++++ .+|+.|+++.+.+.+|....+..++....... ... ......+|++|++++||
T Consensus 237 ~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg 316 (342)
T d2blla1 237 ENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLD 316 (342)
T ss_dssp HCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHC
T ss_pred hhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccCHHHHHHHHC
Confidence 863 24599998765 58999999999999987755443322111110 000 11234679999999999
Q ss_pred C--cchHHHHHHHHHhhchhhhcC
Q 022112 280 E--LLSIKESLIKYVFEPNKKTTG 301 (302)
Q Consensus 280 ~--~~~~~e~i~~~~~~~~~~~~~ 301 (302)
| ..+++|+| +++++|++++..
T Consensus 317 w~P~~sleegl-~~ti~~y~~~~~ 339 (342)
T d2blla1 317 WEPKIDMQETI-DETLDFFLRTVD 339 (342)
T ss_dssp CCCCCCHHHHH-HHHHHHHHHHSC
T ss_pred CCcCCCHHHHH-HHHHHHHHhCcC
Confidence 3 45999999 999999988765
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=2.8e-39 Score=280.60 Aligned_cols=273 Identities=15% Similarity=0.121 Sum_probs=217.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhcCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAVKP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~~~ 63 (302)
++++|||||||||||++|+++|+++||+|++ +.+|+.|...+..... .+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~--~~ 92 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV 92 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc--cc
Confidence 3468999999999999999999999999987 3567777777776666 89
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
+.|+|+++.. ....+..++...+++|+.|+.+++++|++.++ ++|++||+.+||... ..|+.|+++..|.
T Consensus 93 ~~v~~~~a~~---~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~------~~~~~E~~~~~p~ 163 (341)
T d1sb8a_ 93 DYVLHQAALG---SVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHP------GLPKVEDTIGKPL 163 (341)
T ss_dssp SEEEECCSCC---CHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC------CSSBCTTCCCCCC
T ss_pred cccccccccc---cccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCC------CCCccCCCCCCCC
Confidence 9999999977 46677889999999999999999999999998 599999999999765 6678898888766
Q ss_pred CCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCc-------hhhHHHHhcccccc-----cccCCcccHhhH
Q 022112 143 GSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP-------RNFITKITRYEKVV-----NIPNSMTILDEL 205 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~-----~~~~~~i~v~D~ 205 (302)
+.|+.+|.++|++++.+. +.+++||+.+||+..... ..++..++.+.++. .+.++|+|++|+
T Consensus 164 -~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~ 242 (341)
T d1sb8a_ 164 -SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT 242 (341)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred -CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEecc
Confidence 999999999999987654 459999999999864322 23556677776643 246799999999
Q ss_pred HHHHHHHHhcC---CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--C
Q 022112 206 LPISIEMAKRN---LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--E 280 (302)
Q Consensus 206 a~~~~~~~~~~---~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~ 280 (302)
|.++..++... .+++||+++++.+|+.|+++.+.+.++.+........ ..............+|++|+++.|| +
T Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~k~~~~LGw~p 321 (341)
T d1sb8a_ 243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREP-VYRDFREGDVRHSLADISKAAKLLGYAP 321 (341)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCC-EEECCCTTCCSBCCBCCHHHHHHTCCCC
T ss_pred chhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccc-cccCCCCCCcCeeeeCHHHHHHHHCCCc
Confidence 99999988753 3569999999999999999999999885532111110 0000111111245689999999999 4
Q ss_pred cchHHHHHHHHHhhchhhh
Q 022112 281 LLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 281 ~~~~~e~i~~~~~~~~~~~ 299 (302)
..+++++| +++++|.++.
T Consensus 322 ~~sl~~gi-~~ti~wy~~~ 339 (341)
T d1sb8a_ 322 KYDVSAGV-ALAMPWYIMF 339 (341)
T ss_dssp CCCHHHHH-HHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHh
Confidence 56999999 9999988764
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-39 Score=281.61 Aligned_cols=272 Identities=19% Similarity=0.211 Sum_probs=212.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
.|||||||||||++|+++|+++|++|++ +.+|+.|.+.+..++...++|+|||+|
T Consensus 3 ~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~VihlA 82 (347)
T d1z45a2 3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFA 82 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEcc
Confidence 5999999999999999999999999987 568999999999999988999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
+.. .+.....++..+..+|+.++.+++++|++.+++ +|++||++|||.....+. ..++.|+.+..|. +.|+.+
T Consensus 83 a~~---~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~--~~~~~e~~~~~p~-~~Y~~s 156 (347)
T d1z45a2 83 GLK---AVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPN--MIPIPEECPLGPT-NPYGHT 156 (347)
T ss_dssp SCC---CHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTT--CCSBCTTSCCCCC-SHHHHH
T ss_pred ccc---cccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCC--CCccccccCCCCC-ChhHhH
Confidence 987 466677788999999999999999999999975 999999999997664443 5678888777765 899999
Q ss_pred HHHHHHHHHhhcC-------ceEEeeecccCCCCCC---------chhhHHHHhc----c-cccc-----------cccC
Q 022112 150 KAMVEELLKNFEN-------VCTLRVRMPISSDLSN---------PRNFITKITR----Y-EKVV-----------NIPN 197 (302)
Q Consensus 150 K~~~E~~~~~~~~-------~~~lR~~~v~g~~~~~---------~~~~~~~~~~----~-~~~~-----------~~~~ 197 (302)
|.++|++++.+.+ .+++|++.+||+.... +..++..+.. . .++. ...+
T Consensus 157 K~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~ 236 (347)
T d1z45a2 157 KYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIR 236 (347)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEE
T ss_pred HHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceee
Confidence 9999999876531 2799999999864321 1123333222 1 2211 1245
Q ss_pred CcccHhhHHHHHHHHHhc--------CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCcc
Q 022112 198 SMTILDELLPISIEMAKR--------NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNEL 269 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~--------~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (302)
|++++.|.+.+++.+++. ...++||+++++++|+.|+++.+.+.+|.+.++..... .........+
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~ 310 (347)
T d1z45a2 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR------RAGDVLNLTA 310 (347)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC---------------CCCCCB
T ss_pred eeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC------CCCCCCEeeE
Confidence 677888888888887764 12368999999999999999999999998866422111 1111224568
Q ss_pred CchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 270 DASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 270 d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
|++|++++|| +..+|+|+| +++++|+++|+
T Consensus 311 d~sk~~~~lGw~p~~~lee~i-~~ti~w~~~np 342 (347)
T d1z45a2 311 KPDRAKRELKWQTELQVEDSC-KDLWKWTTENP 342 (347)
T ss_dssp CCHHHHHHTCCCCCCCHHHHH-HHHHHHHHHCT
T ss_pred CHHHHHHHHCCCCCCCHHHHH-HHHHHHHHhCh
Confidence 9999999999 456999999 99999999875
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.5e-39 Score=275.52 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=213.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
++|||||||||||++|+++|+++||+|++ +.+|++|.+.+.+.+....+++++|+|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a 80 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA 80 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence 48999999999999999999999999987 467899999999999988999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI--LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
+.. .......++..+++.|+.++.+++++|++.+++ +++.||..+|+... ..+++|+++..|. ++|+.
T Consensus 81 ~~~---~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~------~~~~~E~~~~~p~-~~Y~~ 150 (321)
T d1rpna_ 81 AQS---FVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ------AERQDENTPFYPR-SPYGV 150 (321)
T ss_dssp SCC---CHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS------SSSBCTTSCCCCC-SHHHH
T ss_pred ccc---cccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCccc------CCCCCCCCCcccc-ChhHH
Confidence 877 466677788999999999999999999998864 67777777887665 5566788777765 99999
Q ss_pred hHHHHHHHHHhhc-----CceEEeeecccCCCCCCc------hhhHHHHhcccc-cc-----cccCCcccHhhHHHHHHH
Q 022112 149 TKAMVEELLKNFE-----NVCTLRVRMPISSDLSNP------RNFITKITRYEK-VV-----NIPNSMTILDELLPISIE 211 (302)
Q Consensus 149 ~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~------~~~~~~~~~~~~-~~-----~~~~~~i~v~D~a~~~~~ 211 (302)
+|.++|.++..+. ..+++||+.+|||..... ..++.++..+.. .. .+.++|+|++|+|+++..
T Consensus 151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~ 230 (321)
T d1rpna_ 151 AKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWL 230 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHH
Confidence 9999999987654 338999999999854221 122333333332 21 256789999999999999
Q ss_pred HHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccc-cccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHH
Q 022112 212 MAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWK-NFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESL 288 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i 288 (302)
+++++..+.||+++++..|+.++++.+.+.+|.+.+.. .... ....+........|++|++++|| +..+|+|+|
T Consensus 231 ~~~~~~~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i 307 (321)
T d1rpna_ 231 MLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDP---AFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELI 307 (321)
T ss_dssp HHHSSSCCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECG---GGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHH
T ss_pred HHhcCCcCCceecccccceehhhhHHHHHHhCCCccceeecCC---CCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHH
Confidence 99998889999999999999999999999999875421 1110 00111111245679999999999 446899999
Q ss_pred HHHHhhchhh
Q 022112 289 IKYVFEPNKK 298 (302)
Q Consensus 289 ~~~~~~~~~~ 298 (302)
++++++..+
T Consensus 308 -~~tv~~~l~ 316 (321)
T d1rpna_ 308 -RMMVEADLR 316 (321)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 888887544
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-38 Score=274.60 Aligned_cols=270 Identities=19% Similarity=0.149 Sum_probs=211.6
Q ss_pred cEE-EEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhcCC
Q 022112 15 LKF-LIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAVKP 63 (302)
Q Consensus 15 ~~i-lItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~~~ 63 (302)
+|| ||||||||||++|+++|+++||+|++ +.+|++|.+.+..++.+.++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 478 99999999999999999999999986 45689999999999998999
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC----eEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL----ILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~----~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
++|+|+++.. .+.....++..++++|+.++.+++++|++.++ ++|++||++|||... ..+++|++++
T Consensus 81 ~~v~~~~a~~---~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~------~~~~~E~~~~ 151 (347)
T d1t2aa_ 81 TEIYNLGAQS---HVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ------EIPQKETTPF 151 (347)
T ss_dssp SEEEECCSCC---CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS------SSSBCTTSCC
T ss_pred ceeeeeeecc---ccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCC------CCCCCCCCCC
Confidence 9999999977 46677788889999999999999999999764 699999999999754 5678899888
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc---hhhHHH----Hhcccccc-----cccCCcccH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP---RNFITK----ITRYEKVV-----NIPNSMTIL 202 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~---~~~~~~----~~~~~~~~-----~~~~~~i~v 202 (302)
.|. ++||.+|.++|++++.+.+ .+++|++.+||+..... ..+... .....+.. .+.++|+|+
T Consensus 152 ~P~-~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v 230 (347)
T d1t2aa_ 152 YPR-SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHA 230 (347)
T ss_dssp CCC-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEEH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeEe
Confidence 765 8999999999999877533 28999999999854221 122222 22222221 256799999
Q ss_pred hhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCcccccccccccee-----------eecCC----CCC
Q 022112 203 DELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKV-----------IVAPR----SNN 267 (302)
Q Consensus 203 ~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~----~~~ 267 (302)
+|+|+++..++++...+.|+++.....++.+....+...++..+............. ....| ...
T Consensus 231 ~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~ 310 (347)
T d1t2aa_ 231 KDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFL 310 (347)
T ss_dssp HHHHHHHHHHHHSSSCCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBC
T ss_pred cHHHHHHHHHhhcCCCccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEe
Confidence 999999999999887889999999999999999999999987754321111110000 00111 133
Q ss_pred ccCchhHHHhCC--CcchHHHHHHHHHhhc
Q 022112 268 ELDASKLKTEFP--ELLSIKESLIKYVFEP 295 (302)
Q Consensus 268 ~~d~~k~~~~lg--~~~~~~e~i~~~~~~~ 295 (302)
.+|++|++++|| +..+|+|+| ++++++
T Consensus 311 ~~d~skak~~Lgw~P~~sl~e~i-~~~I~~ 339 (347)
T d1t2aa_ 311 QGDCTKAKQKLNWKPRVAFDELV-REMVHA 339 (347)
T ss_dssp CBCCHHHHHHHCCCCCSCHHHHH-HHHHHH
T ss_pred eECHHHHHHHHCCCcCCCHHHHH-HHHHHH
Confidence 579999999999 446999999 777654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.5e-38 Score=268.03 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=214.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVET 88 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~ 88 (302)
|||||||||||||++|++.|.++|+.|.+ ..+|++|.+.+.+.+++.++|+||||||.. .+..+..++...
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~---~~~~~~~~~~~~ 77 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHT---AVDKAESEPELA 77 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCCC---CHHHHTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEecccc---cccccccCcccc
Confidence 79999999999999999999999987766 568999999999999988999999999987 577788899999
Q ss_pred HHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh-cCceEEe
Q 022112 89 IRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF-ENVCTLR 167 (302)
Q Consensus 89 ~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~-~~~~~lR 167 (302)
+..|+.++.+++++|++.+++++++||+.+|+... ..|+.|++++.|. +.|+.+|..+|..+..+ ....++|
T Consensus 78 ~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~------~~~~~E~~~~~p~-~~y~~~k~~~e~~~~~~~~~~~~~~ 150 (298)
T d1n2sa_ 78 QLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTG------DIPWQETDATSPL-NVYGKTKLAGEKALQDNCPKHLIFR 150 (298)
T ss_dssp HHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCT------TCCBCTTSCCCCS-SHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred ccccccccccchhhhhccccccccccccccccCCC------CCCCccccccCCC-chHhhhhhhhhhhHHhhhccccccc
Confidence 99999999999999999999999999999988765 6678898888766 89999999999998665 4557777
Q ss_pred eecccCCCCCCchhhHHH-Hhcccccc---cccCCcccHhhHHHHHHHHHhc-----CCCCeEEecCCCccCHHHHHHHH
Q 022112 168 VRMPISSDLSNPRNFITK-ITRYEKVV---NIPNSMTILDELLPISIEMAKR-----NLTGIWNFTNPGVVSHNEILEMY 238 (302)
Q Consensus 168 ~~~v~g~~~~~~~~~~~~-~~~~~~~~---~~~~~~i~v~D~a~~~~~~~~~-----~~~~~~~~~~~~~~s~~e~~~~~ 238 (302)
++..+++.......++.. +.....+. ....+++|+.|+++++..++.. ...++||+++++.+++.|+++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i 230 (298)
T d1n2sa_ 151 TSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAGGTTTWHDYAALV 230 (298)
T ss_dssp ECSEECSSSCCHHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCCBSCEEHHHHHHHH
T ss_pred ccceeeccCCccchhhhhhhcccceeecccceeecccccchHHHHHHHHHhhhhccccccccccccCCCceecHHHHHHH
Confidence 777766533233333333 33333321 3567899999999999887753 34689999999999999999999
Q ss_pred HhhcCCC---Cccccc-cccccceeeecCCC-CCccCchhHHHhCC-CcchHHHHHHHHHhhchhhh
Q 022112 239 RQYIDPN---FTWKNF-TLEEQAKVIVAPRS-NNELDASKLKTEFP-ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 239 ~~~~g~~---~~~~~~-~~~~~~~~~~~~~~-~~~~d~~k~~~~lg-~~~~~~e~i~~~~~~~~~~~ 299 (302)
.+..+.. ...... +.........+.|+ +..+|++|+++.|| .+++|+++| +++++.+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~~~~~gl-~~~i~~~~~~ 296 (298)
T d1n2sa_ 231 FDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILPQWELGV-KRMLTEMFTT 296 (298)
T ss_dssp HHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCCBHHHHH-HHHHHHHHSC
T ss_pred HhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCCcHHHHH-HHHHHHHHhh
Confidence 8866432 111111 01111112234443 55799999999999 777999999 8888887654
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-38 Score=268.43 Aligned_cols=270 Identities=12% Similarity=0.104 Sum_probs=207.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE----eecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----GSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETI 89 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~----~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~ 89 (302)
++||||||||||||++|+++|+++|+.|++ -..|+.+.+.+.+++...++|.|+|+|+..+ .......++...+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~~~~--~~~~~~~~~~~~~ 79 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVG--GIVANNTYPADFI 79 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCCCC--CHHHHHHCHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcchhcc--ccccchhhHHHHH
Confidence 458999999999999999999999999887 3577889999999999889999999998763 3334456777889
Q ss_pred HHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCC----CCCCCCCchhhhHHHHHHHHHhhcC--
Q 022112 90 RTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEED----TPNFVGSFYSKTKAMVEELLKNFEN-- 162 (302)
Q Consensus 90 ~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~----~~~~~~~~Y~~~K~~~E~~~~~~~~-- 162 (302)
++|+.++.+++++|++.+++ +||+||++|||.....| ++|+. .+.++.++|+.+|.++|++++.+.+
T Consensus 80 ~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~------~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~ 153 (315)
T d1e6ua_ 80 YQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQP------MAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY 153 (315)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSS------BCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCC------ccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999985 99999999999776443 44443 3344446799999999999987653
Q ss_pred ---ceEEeeecccCCCCCCc---hhh---------HHHHhcccccc-----cccCCcccHhhHHHHHHHHHhc-------
Q 022112 163 ---VCTLRVRMPISSDLSNP---RNF---------ITKITRYEKVV-----NIPNSMTILDELLPISIEMAKR------- 215 (302)
Q Consensus 163 ---~~~lR~~~v~g~~~~~~---~~~---------~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~------- 215 (302)
.+++||+++|||..... ..+ ......+..+. ...++|+|++|++.++..+++.
T Consensus 154 gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~ 233 (315)
T d1e6ua_ 154 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLE 233 (315)
T ss_dssp CCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccc
Confidence 28999999999864321 111 12222222221 2357899999999999998854
Q ss_pred ---CCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHH
Q 022112 216 ---NLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIK 290 (302)
Q Consensus 216 ---~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~ 290 (302)
...+.++++.+...++.++++.+.+.+|.+..+..... .+.......+|++|+++ || +..+++|+| +
T Consensus 234 ~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~------~~~~~~~~~~d~sk~k~-Lg~~p~~~l~e~i-~ 305 (315)
T d1e6ua_ 234 NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS------KPDGTPRKLLDVTRLHQ-LGWYHEISLEAGL-A 305 (315)
T ss_dssp TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT------SCCCCSBCCBCCHHHHH-TTCCCCCCHHHHH-H
T ss_pred cccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC------CCCCCceeccCHHHHHH-cCCCCCCCHHHHH-H
Confidence 23468999999999999999999999998865321111 11111234689999975 89 456999999 9
Q ss_pred HHhhchhhh
Q 022112 291 YVFEPNKKT 299 (302)
Q Consensus 291 ~~~~~~~~~ 299 (302)
++++|+++|
T Consensus 306 ~ti~w~~~N 314 (315)
T d1e6ua_ 306 STYQWFLEN 314 (315)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998876
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=1.8e-37 Score=273.28 Aligned_cols=277 Identities=12% Similarity=0.126 Sum_probs=210.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh-CCCcEEE-----------------------------------------eecCCCCh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY-----------------------------------------GSGRLENR 51 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~-~g~~V~~-----------------------------------------~~~dl~~~ 51 (302)
.|||||||||||||++|+++|++ .||+|++ +.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 47999999999999999999986 6898875 36899999
Q ss_pred hhHHHHHhhc-CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCC-
Q 022112 52 ASLEADIAAV-KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLG- 128 (302)
Q Consensus 52 ~~~~~~~~~~-~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~- 128 (302)
+.+.++++.. .+|+|||+|+.. .......++...++.|+.++.++++++++.+++ ++++||+.+|+.....+..
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~---~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 158 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFL---AVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVST 158 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----
T ss_pred HHhhhhhhccceeehhhcccccc---cccccccccccccccccccccccchhhhccCCcccccccccccccccccccccc
Confidence 9999999866 569999999987 355667788899999999999999999999876 8888888888876543332
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc--------hh----hHHHHhcc--
Q 022112 129 SGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP--------RN----FITKITRY-- 189 (302)
Q Consensus 129 ~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~--------~~----~~~~~~~~-- 189 (302)
+..++.|+++..|. ++|+.+|..+|++++.+.+ .+++|++.+||+..... .. ++.+++..
T Consensus 159 ~~~~~~e~~~~~p~-~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~ 237 (383)
T d1gy8a_ 159 NAEPIDINAKKSPE-SPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIA 237 (383)
T ss_dssp CCCCBCTTSCCBCS-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHS
T ss_pred cccccccccCCCCC-CHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcc
Confidence 24567777777766 9999999999999987643 38899999999864321 11 22222221
Q ss_pred --cc------------c-----------ccccCCcccHhhHHHHHHHHHhc----------CCCCeEEecCCCccCHHHH
Q 022112 190 --EK------------V-----------VNIPNSMTILDELLPISIEMAKR----------NLTGIWNFTNPGVVSHNEI 234 (302)
Q Consensus 190 --~~------------~-----------~~~~~~~i~v~D~a~~~~~~~~~----------~~~~~~~~~~~~~~s~~e~ 234 (302)
.. + ..+.+||+|++|+|++++.+++. ...++||+++++++|+.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~~s~~el 317 (383)
T d1gy8a_ 238 PDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREV 317 (383)
T ss_dssp CC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCCEEHHHH
T ss_pred ccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCceeHHHH
Confidence 10 0 01246899999999999998864 1235899999999999999
Q ss_pred HHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 235 LEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
++.+.+.+|.+.+...... ......+..+|++|+++.|| +..+++|+|+++...|.++++
T Consensus 318 ~~~i~~~~~~~~~~~~~~~------~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 318 IEVARKTTGHPIPVRECGR------REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHHCCCCCEEEECC------CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCCCCceEECCC------CCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 9999999998865432211 11111245679999999999 346999999555567777764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.3e-36 Score=260.78 Aligned_cols=269 Identities=16% Similarity=0.108 Sum_probs=206.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhcCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAVKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~~~d 64 (302)
+++||||||||||++|+++|+++||+|++ ..+|+++.+.+...++..++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 58999999999999999999999999987 347888999999999888999
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC------CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG------LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~------~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|||+|+.. .......+|......|+.++.++++++++.. .++++.||+.+|+.. ..+++|+++
T Consensus 82 ~Vih~Aa~~---~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-------~~~~~E~~~ 151 (339)
T d1n7ha_ 82 EVYNLAAQS---HVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-------PPPQSETTP 151 (339)
T ss_dssp EEEECCSCC---CHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-------CSSBCTTSC
T ss_pred hhhhccccc---cccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-------CCCCCCCCC
Confidence 999999987 4566678999999999999999999998642 246666777777654 456788888
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc--hh-hH---HHHhcccc--c----ccccCCccc
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP--RN-FI---TKITRYEK--V----VNIPNSMTI 201 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~--~~-~~---~~~~~~~~--~----~~~~~~~i~ 201 (302)
..|. +.|+.+|..+|.++..+.+ .+++||+.+|||..... .. +. .....+.. + ..+.++|+|
T Consensus 152 ~~p~-~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~ 230 (339)
T d1n7ha_ 152 FHPR-SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGF 230 (339)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEE
T ss_pred CCCc-chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCcccccee
Confidence 7765 9999999999999866543 39999999999854221 11 11 12222222 1 125678999
Q ss_pred HhhHHHHHHHHHhcCCCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhCC--
Q 022112 202 LDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP-- 279 (302)
Q Consensus 202 v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg-- 279 (302)
++|+|+++..+++++..+.+++..+...++.++++.+.+.+|........... ....+.......+|++|+++.||
T Consensus 231 v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~d~~Kak~~LGw~ 308 (339)
T d1n7ha_ 231 AGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQ--RYFRPAEVDNLQGDASKAKEVLGWK 308 (339)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECG--GGSCSSCCCBCCBCCHHHHHHHCCC
T ss_pred eehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeecc--CCCCCCCCCeeeECHHHHHHHHCCC
Confidence 99999999999999888888888889999999999999999987542111000 00111111234679999999999
Q ss_pred CcchHHHHHHHHHhhchh
Q 022112 280 ELLSIKESLIKYVFEPNK 297 (302)
Q Consensus 280 ~~~~~~e~i~~~~~~~~~ 297 (302)
+..+|+|+| +++++|..
T Consensus 309 P~~~le~gi-~~ti~~~~ 325 (339)
T d1n7ha_ 309 PQVGFEKLV-KMMVDEDL 325 (339)
T ss_dssp CCSCHHHHH-HHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHH
Confidence 346999999 88887653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.5e-36 Score=265.84 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=196.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------------------eecCCCChh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------------------GSGRLENRA 52 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------------------~~~dl~~~~ 52 (302)
+|||||||||||||++|+++|+++||+|++ +.+|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 489999999999999999999999999975 358999999
Q ss_pred hHHHHHhhcCCCEEEEccccCCCCCcchhh---hhHHHHHHHhHHHHHHHHHHHHHhCCe--EEEEcCCccccCCCCCCC
Q 022112 53 SLEADIAAVKPTHVFNAAGVTGRPNVDWCE---SHKVETIRTNVVGTLTLADVCRDKGLI--LINYATGCIFEYDSGHPL 127 (302)
Q Consensus 53 ~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~---~~~~~~~~~n~~~~~~ll~~~~~~~~~--~v~~SS~~vy~~~~~~~~ 127 (302)
.+..+++..++|+|||+||... ...+. ..+..++.+|+.++.+++++|++.+++ +++.||..+|+.......
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~---~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~ 157 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRS---APYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE 157 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCC---HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred HHHHHHHhhcchheeccccccc---cccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence 9999999889999999999762 33332 346678899999999999999998764 666666677775431110
Q ss_pred CCCCCCCC-------CCCCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc----------------
Q 022112 128 GSGIGFKE-------EDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP---------------- 179 (302)
Q Consensus 128 ~~~~~~~e-------~~~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~---------------- 179 (302)
.......+ ..+..| .+.|+.+|..+|.+++.+.+ .+++|++.+||+.....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~p-~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~ 236 (393)
T d1i24a_ 158 EGYITITHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 236 (393)
T ss_dssp SSEEEEEETTEEEEEECCCCC-CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTT
T ss_pred ccccccccccccccccccccc-ccHHHHHhhhhcccccccccccceeeeecccccccCCCcccccccccccccccccccc
Confidence 00000111 113333 48899999999999876543 38999999999864211
Q ss_pred ----hhhHHHHhcccccc-----cccCCcccHhhHHHHHHHHHhcC-CCCeEEe--cCCCccCHHHHHHHHHhhcC---C
Q 022112 180 ----RNFITKITRYEKVV-----NIPNSMTILDELLPISIEMAKRN-LTGIWNF--TNPGVVSHNEILEMYRQYID---P 244 (302)
Q Consensus 180 ----~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~--~~~~~~s~~e~~~~~~~~~g---~ 244 (302)
..|+.++..+.++. .+.+||+|++|+++++..++++. ..+.|++ .+++.+|+.|+++.+.+..+ .
T Consensus 237 ~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~ 316 (393)
T d1i24a_ 237 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGL 316 (393)
T ss_dssp CCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTC
T ss_pred ccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCC
Confidence 23555566665532 25689999999999999999874 4455544 44578999999999988754 3
Q ss_pred CCccccccccccceeee-cCCCCCccCchhHHHhCC--CcchHHHHHHHHHhhchhhhc
Q 022112 245 NFTWKNFTLEEQAKVIV-APRSNNELDASKLKTEFP--ELLSIKESLIKYVFEPNKKTT 300 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~~~~~~~ 300 (302)
++..... ..+.. ....+...|++|+++ || +..+++++| ++++++.+++.
T Consensus 317 ~~~~~~~-----~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i-~~~~~~~~~~k 368 (393)
T d1i24a_ 317 DVKKMTV-----PNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLL-DSLLNFAVQFK 368 (393)
T ss_dssp CCCEEEE-----CCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHH-HHHHHHHHHTG
T ss_pred Ccceeec-----cCCCCCCCccEecCCHHHHHH-cCCccccCHHHHH-HHHHHHHHHHH
Confidence 3322111 01111 111244689999976 89 556889999 99988876643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.6e-34 Score=249.60 Aligned_cols=272 Identities=16% Similarity=0.238 Sum_probs=201.0
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
||||||||||||++|+++|+++|++|++ +.+|+++.+.+.++++..++|+|||+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 8999999999999999999999999987 3589999999999999889999999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCcc-ccCCCCCCCC----------CCCCCCCCCCC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCI-FEYDSGHPLG----------SGIGFKEEDTP 139 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~v-y~~~~~~~~~----------~~~~~~e~~~~ 139 (302)
.. .......++....++|+.|+.+|+++|++.+++ +|++||+.+ |+.....+.. ......+..+.
T Consensus 82 ~~---~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 82 QV---AMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CC---CHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred cc---cccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 87 455666788999999999999999999999875 666666554 4433221110 01122233334
Q ss_pred CCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCc------hhhHHHHhc-----ccccc-----cccCC
Q 022112 140 NFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNP------RNFITKITR-----YEKVV-----NIPNS 198 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~------~~~~~~~~~-----~~~~~-----~~~~~ 198 (302)
.|. +.|+.+|...|.++..+.. ..++|+..+|++..... ..++..++. +.++. .+.++
T Consensus 159 ~~~-~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~ 237 (338)
T d1orra_ 159 DFH-SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRD 237 (338)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEE
T ss_pred ccc-cccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCceeEe
Confidence 433 7899999999998755432 27788888887654322 234444443 22221 24678
Q ss_pred cccHhhHHHHHHHHHhcC---CCCeEEecC--CCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchh
Q 022112 199 MTILDELLPISIEMAKRN---LTGIWNFTN--PGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASK 273 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~---~~~~~~~~~--~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 273 (302)
|+|++|++++++.++++. .+++||+.. +..+++.|+++.+.+.+|.+.++...... +.......+|++|
T Consensus 238 ~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~d~~k 311 (338)
T d1orra_ 238 VLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPVR------ESDQRVFVADIKK 311 (338)
T ss_dssp CEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECCC------SSCCSEECBCCHH
T ss_pred eecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCCCceeEeCCCC------CCCcCeeeECHHH
Confidence 999999999999998753 457899854 46789999999999999987654322111 1111234579999
Q ss_pred HHHhCC--CcchHHHHHHHHHhhchhh
Q 022112 274 LKTEFP--ELLSIKESLIKYVFEPNKK 298 (302)
Q Consensus 274 ~~~~lg--~~~~~~e~i~~~~~~~~~~ 298 (302)
+++.|| +..+++|+| +++++|.|.
T Consensus 312 ~~~~Lg~~p~~sl~e~i-~~ti~W~k~ 337 (338)
T d1orra_ 312 ITNAIDWSPKVSAKDGV-QKMYDWTSS 337 (338)
T ss_dssp HHHHHCCCCCSCHHHHH-HHHHHHHHH
T ss_pred HHHHHCCCcCCCHHHHH-HHHHHHHHc
Confidence 999999 346999999 999999874
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=1.5e-33 Score=245.54 Aligned_cols=271 Identities=20% Similarity=0.243 Sum_probs=200.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
.|||||||||||||++|+++|+++|++|++ +.+|++|.+.+.+++....+|+|+|+|
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~a 87 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMA 87 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhhh
Confidence 479999999999999999999999999998 457899999999999988999999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCc-cccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGC-IFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~-vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
+.. ....+..++...+.+|+.++.++++++++.+.+ +++.||++ +|..... ..+..|+.+..|. ++|+.
T Consensus 88 a~~---~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~~~~~p~-~~y~~ 158 (356)
T d1rkxa_ 88 AQP---LVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-----IWGYRENEAMGGY-DPYSN 158 (356)
T ss_dssp SCC---CHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-----SSCBCTTSCBCCS-SHHHH
T ss_pred ccc---cccccccCCccccccccccchhhhhhhhcccccccccccccccccccccc-----ccccccccccCCC-Ccccc
Confidence 987 455667889999999999999999999998654 44444444 4433321 3345555555544 89999
Q ss_pred hHHHHHHHHHhhc--------------CceEEeeecccCCCCCCchhhH----HHHhcccccc----cccCCcccHhhHH
Q 022112 149 TKAMVEELLKNFE--------------NVCTLRVRMPISSDLSNPRNFI----TKITRYEKVV----NIPNSMTILDELL 206 (302)
Q Consensus 149 ~K~~~E~~~~~~~--------------~~~~lR~~~v~g~~~~~~~~~~----~~~~~~~~~~----~~~~~~i~v~D~a 206 (302)
+|...|..+..+. ...++||+.+||+.......++ ..+..+.... .+.++++|++|++
T Consensus 159 ~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~ 238 (356)
T d1rkxa_ 159 SKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPL 238 (356)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHH
T ss_pred ccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceEEeecccccccccccccc
Confidence 9999998875432 1278999999998754444343 3444443322 2467899999999
Q ss_pred HHHHHHHhcC--C----CCeE--EecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCchhHHHhC
Q 022112 207 PISIEMAKRN--L----TGIW--NFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEF 278 (302)
Q Consensus 207 ~~~~~~~~~~--~----~~~~--~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l 278 (302)
.++..++.+. . .... +...+..+++.++++.+.+.++....+.... ...+.......+|++|++++|
T Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~skak~~L 313 (356)
T d1rkxa_ 239 SGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDG-----NAHPHEAHYLKLDCSKAKMQL 313 (356)
T ss_dssp HHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC------------CCCCCCBCCHHHHHHH
T ss_pred chhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcC-----CCCCCCcCeeeEcHHHHHHHH
Confidence 9999888762 1 2233 3334567899999999999999876532111 111122234578999999999
Q ss_pred C--CcchHHHHHHHHHhhchhhh
Q 022112 279 P--ELLSIKESLIKYVFEPNKKT 299 (302)
Q Consensus 279 g--~~~~~~e~i~~~~~~~~~~~ 299 (302)
| +..+++++| +++++|++..
T Consensus 314 Gw~P~~~l~egi-~~ti~wyk~~ 335 (356)
T d1rkxa_ 314 GWHPRWNLNTTL-EYIVGWHKNW 335 (356)
T ss_dssp CCCCCCCHHHHH-HHHHHHHHHH
T ss_pred CCCcCCCHHHHH-HHHHHHHHHH
Confidence 9 446899999 8888877653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=9.7e-33 Score=239.21 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=187.3
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCE
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTH 65 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~ 65 (302)
+.+++|||||||||||++|+++|+++|++|++ +.+|+.|.+++..++. ++|+
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~~ 86 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAG 86 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSE
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cchh
Confidence 34579999999999999999999999999987 4468888888888887 8999
Q ss_pred EEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-CCe-EEEEcCCccccCCCCCCC---CCCC---------
Q 022112 66 VFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-GLI-LINYATGCIFEYDSGHPL---GSGI--------- 131 (302)
Q Consensus 66 Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~-~v~~SS~~vy~~~~~~~~---~~~~--------- 131 (302)
|+|+|+... ...++...+..|+.++.+++++|++. +++ +|++||+.++........ .++.
T Consensus 87 v~~~a~~~~------~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (342)
T d1y1pa1 87 VAHIASVVS------FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp EEECCCCCS------CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred hhhhccccc------ccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccc
Confidence 999999762 23456677889999999999999986 455 888888765432221110 0011
Q ss_pred --CCCCCCCCCCCCCchhhhHHHHHHHHHhhcC-------ceEEeeecccCCCCCC------chhhHHHHhcccccc---
Q 022112 132 --GFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-------VCTLRVRMPISSDLSN------PRNFITKITRYEKVV--- 193 (302)
Q Consensus 132 --~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~-------~~~lR~~~v~g~~~~~------~~~~~~~~~~~~~~~--- 193 (302)
...|+.+..|. +.|+.+|..+|++++.|.+ ...+||+.+||+.... ...++..++.+....
T Consensus 161 ~~~~~e~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 239 (342)
T d1y1pa1 161 AKTLPESDPQKSL-WVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239 (342)
T ss_dssp HHHSCTTSTTHHH-HHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHH
T ss_pred cccccccCCCCCc-CcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccC
Confidence 12333333333 6899999999998866532 1668899999975321 124666777766422
Q ss_pred -cccCCcccHhhHHHHHHHHHhcC-CCCeEEecCCCccCHHHHHHHHHhhcCCCCccccccccccceeeecCCCCCccCc
Q 022112 194 -NIPNSMTILDELLPISIEMAKRN-LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDA 271 (302)
Q Consensus 194 -~~~~~~i~v~D~a~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 271 (302)
...++|+|++|+|++++.+++++ ..+.|++++++.+++.|+++.+.+.++.......++. . .......+...+
T Consensus 240 ~~~~~~~v~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~--~--~~~~~~~~~~~s- 314 (342)
T d1y1pa1 240 LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD--Q--GQDLSKFDTAPS- 314 (342)
T ss_dssp TCCSEEEEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC--C--CCCCCEECCHHH-
T ss_pred CccceeeeeHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCc--c--CcccccccchHH-
Confidence 34668999999999999999875 4578889999999999999999998742211111110 0 000000011223
Q ss_pred hhHHHhCC--CcchHHHHHHHHHhhch
Q 022112 272 SKLKTEFP--ELLSIKESLIKYVFEPN 296 (302)
Q Consensus 272 ~k~~~~lg--~~~~~~e~i~~~~~~~~ 296 (302)
.+..+.+| .+.+++|+| +++++..
T Consensus 315 ~~~~k~lg~~~~~~lee~i-~d~I~s~ 340 (342)
T d1y1pa1 315 LEILKSLGRPGWRSIEESI-KDLVGSE 340 (342)
T ss_dssp HHHHHHTTCCSCCCHHHHH-HHHHCCS
T ss_pred HHHHHHcCCCCCcCHHHHH-HHHHHhC
Confidence 34445588 567999999 8887653
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-32 Score=229.80 Aligned_cols=263 Identities=11% Similarity=0.143 Sum_probs=181.9
Q ss_pred EEEEcCCcchHHHHHHHHHhCCC-cEEEee----------------cCCCChhhHHHHHh----hcCCCEEEEccccCCC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSI-DFTYGS----------------GRLENRASLEADIA----AVKPTHVFNAAGVTGR 75 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~-~V~~~~----------------~dl~~~~~~~~~~~----~~~~d~Vi~~a~~~~~ 75 (302)
|||||||||||++|+++|+++|+ +|+++. .|..+.+.+..... -..+++|+|+|+...
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~~- 80 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSS- 80 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCC-
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhccccc-
Confidence 89999999999999999999996 677642 11112222222221 126789999998652
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEE 155 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~ 155 (302)
....+.......|+.++.+++++++..++++++.||+.+|.... .....++.+.. +.+.|+.+|..+|.
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~------~~~~~~~~~~~-~~~~Y~~~K~~~e~ 149 (307)
T d1eq2a_ 81 ----TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRT------SDFIESREYEK-PLNVYGYSKFLFDE 149 (307)
T ss_dssp ----TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCC------SCBCSSGGGCC-CSSHHHHHHHHHHH
T ss_pred ----cccccccccccccccccccccccccccccccccccccccccccc------ccccccccccc-cccccccccchhhh
Confidence 23446677888999999999999999999999999998887654 22334444443 44899999999999
Q ss_pred HHHhhcCc-----eEEeeecccCCCCCCc-------hhhHHHHhcccccc------cccCCcccHhhHHHHHHHHHhcCC
Q 022112 156 LLKNFENV-----CTLRVRMPISSDLSNP-------RNFITKITRYEKVV------NIPNSMTILDELLPISIEMAKRNL 217 (302)
Q Consensus 156 ~~~~~~~~-----~~lR~~~v~g~~~~~~-------~~~~~~~~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~~~ 217 (302)
+++.+.+. .++|++.+||+..... ..+...+..+.... ...++|+|++|++.++..+++++.
T Consensus 150 ~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~ 229 (307)
T d1eq2a_ 150 YVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 229 (307)
T ss_dssp HHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC
T ss_pred hccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc
Confidence 99776433 8899999999864322 12445555554422 246799999999999999999888
Q ss_pred CCeEEecCCCccCHHHHHHHHHhhcCCC-CccccccccccceeeecCCCCCccCchhHHHhCC--CcchHHHHHHHHHhh
Q 022112 218 TGIWNFTNPGVVSHNEILEMYRQYIDPN-FTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP--ELLSIKESLIKYVFE 294 (302)
Q Consensus 218 ~~~~~~~~~~~~s~~e~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg--~~~~~~e~i~~~~~~ 294 (302)
.+.||+++++..|++|+++.+.+..+.. +...+++. . ...........|++|+++.+| +..+++|+| +++++
T Consensus 230 ~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi-~~~i~ 304 (307)
T d1eq2a_ 230 SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPD--K--LKGRYQAFTQADLTNLRAAGYDKPFKTVAEGV-TEYMA 304 (307)
T ss_dssp CEEEEESCSCCBCHHHHHHHC-------------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHH-HHHHH
T ss_pred ccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCc--c--CCCCCceeeecCHHHHHHHHCCCCCCCHHHHH-HHHHH
Confidence 8999999999999999999998876532 22211111 0 001111234579999999998 467999999 99888
Q ss_pred ch
Q 022112 295 PN 296 (302)
Q Consensus 295 ~~ 296 (302)
|+
T Consensus 305 w~ 306 (307)
T d1eq2a_ 305 WL 306 (307)
T ss_dssp HT
T ss_pred hC
Confidence 75
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.4e-25 Score=181.81 Aligned_cols=185 Identities=13% Similarity=0.072 Sum_probs=139.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC--cEEE------------------eecCCCChhhHHHHHhhcCCCEEEEcccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
++++|||||||||||++|+++|+++|. +|++ ..+|+.+.+++.+++. ++|+|||+++.
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~--~~d~vi~~~~~ 90 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGT 90 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccc--ccccccccccc
Confidence 346899999999999999999999994 6776 3456667777777777 89999999986
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHH
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~ 151 (302)
. ....++..+.++|+.++.+++++|++.+++ ||++||..+++.. . +.|+.+|.
T Consensus 91 ~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~~-------------------~-~~Y~~~K~ 144 (232)
T d2bkaa1 91 T------RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSS-------------------N-FLYLQVKG 144 (232)
T ss_dssp C------HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC-------------------S-SHHHHHHH
T ss_pred c------ccccchhhhhhhcccccceeeecccccCccccccCCccccccCc-------------------c-chhHHHHH
Confidence 5 244566778899999999999999999987 8999987765421 2 68999999
Q ss_pred HHHHHHHhhc--CceEEeeecccCCCCCCch--hhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC-CCeEEecC
Q 022112 152 MVEELLKNFE--NVCTLRVRMPISSDLSNPR--NFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL-TGIWNFTN 225 (302)
Q Consensus 152 ~~E~~~~~~~--~~~~lR~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~-~~~~~~~~ 225 (302)
.+|+.+.... +.+|+||+.+||+...... .++..++............+|++|+|++++.++.++. .+.+.+.+
T Consensus 145 ~~E~~l~~~~~~~~~IlRP~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~~~~~i~~~ 223 (232)
T d2bkaa1 145 EVEAKVEELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQMELLEN 223 (232)
T ss_dssp HHHHHHHTTCCSEEEEEECCEEECTTGGGSHHHHHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCCSSEEEEEH
T ss_pred HhhhccccccccceEEecCceeecCCCcCcHHHHHHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCccCCeEEEcH
Confidence 9999997753 3589999999997432211 1233333332222234457999999999998887654 45666553
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.92 E-value=2.9e-25 Score=188.81 Aligned_cols=211 Identities=14% Similarity=0.106 Sum_probs=152.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
+++||||||||||||++|+++|+++||+|++ +.+|+.|.+.+...+. +++.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~--~~~~~ 79 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVV 79 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc--Ccchh
Confidence 3568999999999999999999999999987 4578889999988888 88999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
+++++... . ..|..++.+++++|++.+ .+++++||.++++... ..+..+. ..
T Consensus 80 ~~~~~~~~---~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~------------~~~~~~~-~~ 132 (312)
T d1qyda_ 80 ISALAGGV---L-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIM------------EHALQPG-SI 132 (312)
T ss_dssp EECCCCSS---S-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSC------------CCCCSST-TH
T ss_pred hhhhhhcc---c-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCc------------ccccchh-hh
Confidence 99988652 1 234455667888888875 4588888765544322 2222233 67
Q ss_pred hhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHH-Hhcccccc-----cccCCcccHhhHHHHHHHHHhcC--
Q 022112 146 YSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITK-ITRYEKVV-----NIPNSMTILDELLPISIEMAKRN-- 216 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~-~~~~~~~~-----~~~~~~i~v~D~a~~~~~~~~~~-- 216 (302)
|...|..++...... ....++|++.+||+.......+... ...+.... +..++|+|++|+|++++.+++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~ 212 (312)
T d1qyda_ 133 TFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 212 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG
T ss_pred hhHHHHHHHHhhcccccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccc
Confidence 888888888887553 5679999999998533221111111 11222211 34678999999999999999764
Q ss_pred CCC-eEEecCCCccCHHHHHHHHHhhcCCCCcccccc
Q 022112 217 LTG-IWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFT 252 (302)
Q Consensus 217 ~~~-~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 252 (302)
.++ +|++++++.+|++|+++.+.+.+|.+......+
T Consensus 213 ~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 213 LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cCceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 334 466777788999999999999999887654443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=7.3e-25 Score=176.52 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=129.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc--EEEe-----------ecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID--FTYG-----------SGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWC 81 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~--V~~~-----------~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~ 81 (302)
+||||||||||||++|+++|+++|+. |+.. ..+..|..++...+. ..+|+|||+++.. ...
T Consensus 3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~-~~~d~vi~~~g~~-----~~~ 76 (212)
T d2a35a1 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLD-GSIDTAFCCLGTT-----IKE 76 (212)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCC-SCCSEEEECCCCC-----HHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccc-cchheeeeeeeee-----ccc
Confidence 69999999999999999999999984 4442 222333333333222 2689999999865 233
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhh
Q 022112 82 ESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160 (302)
Q Consensus 82 ~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~ 160 (302)
..+...+...|+.++.+++++|++.+++ ++++||..+++. ..+.|+.+|..+|+.+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~--------------------~~~~y~~~K~~~E~~l~~~ 136 (212)
T d2a35a1 77 AGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK--------------------SSIFYNRVKGELEQALQEQ 136 (212)
T ss_dssp HSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT--------------------CSSHHHHHHHHHHHHHTTS
T ss_pred cccccccccchhhhhhhcccccccccccccccccccccccc--------------------cccchhHHHHHHhhhcccc
Confidence 4456788999999999999999999987 899998776652 1278999999999998664
Q ss_pred --cCceEEeeecccCCCCCCchhhHHHHhcc-cccccccCCcccHhhHHHHHHHHHhcCCCCeEEec
Q 022112 161 --ENVCTLRVRMPISSDLSNPRNFITKITRY-EKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFT 224 (302)
Q Consensus 161 --~~~~~lR~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~ 224 (302)
.+.+++||+.+||+..... +...+... .........++|++|+|++++.+++++..|.+++.
T Consensus 137 ~~~~~~I~Rp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~i~v~DvA~ai~~~~~~~~~g~~~~~ 201 (212)
T d2a35a1 137 GWPQLTIARPSLLFGPREEFR--LAEILAAPIARILPGKYHGIEACDLARALWRLALEEGKGVRFVE 201 (212)
T ss_dssp CCSEEEEEECCSEESTTSCEE--GGGGTTCCCC----CHHHHHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred ccccceeeCCcceeCCccccc--HHHHHHHHHhhccCCCCcEEEHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3469999999999754211 11111110 00111122459999999999999998777776654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.91 E-value=8e-25 Score=185.16 Aligned_cols=204 Identities=14% Similarity=0.106 Sum_probs=145.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhcCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
++||||||||||||++++++|+++||+|++ +.+|+.+...+...+. .++.|
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~v 80 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh--hceee
Confidence 568999999999999999999999999988 4567778888888887 88999
Q ss_pred EEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 67 i~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
+|+++.. +..++.+++++++..+++ +++.||..... . +.. .......
T Consensus 81 i~~~~~~------------------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~-~------------~~~-~~~~~~~ 128 (307)
T d1qyca_ 81 ISTVGSL------------------QIESQVNIIKAIKEVGTVKRFFPSEFGNDV-D------------NVH-AVEPAKS 128 (307)
T ss_dssp EECCCGG------------------GSGGGHHHHHHHHHHCCCSEEECSCCSSCT-T------------SCC-CCTTHHH
T ss_pred eeccccc------------------ccchhhHHHHHHHHhccccceeeecccccc-c------------ccc-ccccccc
Confidence 9998754 122345677888888776 55555432222 1 111 1122245
Q ss_pred hhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhccccc-----ccccCCcccHhhHHHHHHHHHhcC--C
Q 022112 146 YSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKV-----VNIPNSMTILDELLPISIEMAKRN--L 217 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~a~~~~~~~~~~--~ 217 (302)
+...+...+..++.. ....++|++++||+.......+...+..+... .+..++|+|++|+|++++.+++++ .
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~i~r~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~ 208 (307)
T d1qyca_ 129 VFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTL 208 (307)
T ss_dssp HHHHHHHHHHHHHHHTCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGT
T ss_pred cccccccccchhhccCCCceecccceecCCCccchhhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhc
Confidence 667777777777554 56699999999996432222333333333321 135678999999999999999864 3
Q ss_pred CC-eEEecCCCccCHHHHHHHHHhhcCCCCccccc
Q 022112 218 TG-IWNFTNPGVVSHNEILEMYRQYIDPNFTWKNF 251 (302)
Q Consensus 218 ~~-~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~ 251 (302)
++ +|++++++.+|+.|+++.+.+++|.+.++..+
T Consensus 209 ~~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~ 243 (307)
T d1qyca_ 209 NKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYV 243 (307)
T ss_dssp TEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEE
T ss_pred CceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEEC
Confidence 34 56777789999999999999999998765543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=5.7e-24 Score=170.31 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=135.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
.|+||+||||||+||++++++|+++||+|++ +.+|++|.+++.++++ ++|+|||+++...
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~ 79 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRN 79 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCC
Confidence 3669999999999999999999999999988 7889999999999999 8999999998652
Q ss_pred CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHH
Q 022112 75 RPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153 (302)
Q Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~ 153 (302)
.. . ..+++..++.++++++++.+++ +|++||..++.+... .+ +....|...|..+
T Consensus 80 ---~~-~------~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~-------------~~-~~~~~~~~~~~~~ 135 (205)
T d1hdoa_ 80 ---DL-S------PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK-------------VP-PRLQAVTDDHIRM 135 (205)
T ss_dssp ---CC-S------CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC-------------SC-GGGHHHHHHHHHH
T ss_pred ---ch-h------hhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc-------------cc-ccccccchHHHHH
Confidence 11 1 1135567889999999999986 899999888764321 11 1225788999999
Q ss_pred HHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcCC--CCeEEecC
Q 022112 154 EELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNL--TGIWNFTN 225 (302)
Q Consensus 154 E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~--~~~~~~~~ 225 (302)
|+++++. .+++++||+++++....+...+ .........+++++|+|++++.+++++. +..+.++.
T Consensus 136 e~~l~~~~~~~tiirp~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~~~~~s~ 203 (205)
T d1hdoa_ 136 HKVLRESGLKYVAVMPPHIGDQPLTGAYTV-------TLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYPSH 203 (205)
T ss_dssp HHHHHHTCSEEEEECCSEEECCCCCSCCEE-------ESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTCEEEEEC
T ss_pred HHHHHhcCCceEEEecceecCCCCcccEEE-------eeCCCCCCCcCCHHHHHHHHHHHhCCCCCCCEEEecCC
Confidence 9988654 5679999999987533221111 0011235678999999999999998753 34565554
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=6.1e-24 Score=174.19 Aligned_cols=212 Identities=9% Similarity=0.068 Sum_probs=149.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.|++|||||||||||++++++|+++|++|.+ +.+|+++.+.+.++++ ++|+|||+|+..
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a~~~ 79 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILTSAV 79 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECCCCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccc--cceeeEEEEeec
Confidence 4679999999999999999999999987554 6788999999999999 899999999865
Q ss_pred CCCC----------cchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 74 GRPN----------VDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 74 ~~~~----------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
..+. .............+|+.++.++++.+.....+ +.+.|+...+.... ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-------------~~~~~~ 146 (252)
T d2q46a1 80 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDH-------------PLNKLG 146 (252)
T ss_dssp CEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTC-------------GGGGGG
T ss_pred cccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCc-------------cccccc
Confidence 2100 01112244567788999999999999988776 66666654443211 011112
Q ss_pred CCchhhhHHHHHHHHHhh-cCceEEeeecccCCCCCCchhhHHHHhcc-cccccccCCcccHhhHHHHHHHHHhcC--CC
Q 022112 143 GSFYSKTKAMVEELLKNF-ENVCTLRVRMPISSDLSNPRNFITKITRY-EKVVNIPNSMTILDELLPISIEMAKRN--LT 218 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~D~a~~~~~~~~~~--~~ 218 (302)
...|...+...+.+.... ...+++||+++||+....... +... ........+++|++|+|++++.+++++ .+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~~----~~~~~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~~g 222 (252)
T d2q46a1 147 NGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVREL----LVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKN 222 (252)
T ss_dssp GCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCTTSSCE----EEESTTGGGGSSCCEEEHHHHHHHHHHHTTCGGGTT
T ss_pred ccchhhhhhhhhhhhhcccccceeecceEEECCCcchhhh----hhccCcccccCCCCeEEHHHHHHHHHHHhCCccccC
Confidence 256777777777766544 566999999999975421111 1111 122345678999999999999999864 34
Q ss_pred CeEEecCCC---ccCHHHHHHHHHhhcC
Q 022112 219 GIWNFTNPG---VVSHNEILEMYRQYID 243 (302)
Q Consensus 219 ~~~~~~~~~---~~s~~e~~~~~~~~~g 243 (302)
++||++++. ..++.|+.+++.+..+
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 223 KAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp EEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred cEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 599998743 4677888877776543
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.83 E-value=4.7e-20 Score=159.20 Aligned_cols=206 Identities=14% Similarity=0.081 Sum_probs=142.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhh-HHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRAS-LEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~-~~~~~~~~~~d~Vi~~a 70 (302)
++++|||||||||||++|+++|+++||+|++ +.+|+.|..+ +..++. .+|.+++..
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEeec
Confidence 3568999999999999999999999999988 5667776544 555666 788888765
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhh
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKT 149 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~ 149 (302)
.... ..++..+.+++++|++.++ +++++||........ ..+. .+|..+
T Consensus 80 ~~~~---------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~---------------~~~~-~~~~~~ 128 (350)
T d1xgka_ 80 TSQA---------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYG---------------PWPA-VPMWAP 128 (350)
T ss_dssp CSTT---------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTS---------------SCCC-CTTTHH
T ss_pred cccc---------------chhhhhhhHHHHHHHHhCCCceEEEeeccccccCC---------------cccc-hhhhhh
Confidence 4331 1345667889999999987 488888865443221 1122 577889
Q ss_pred HHHHHHHHHhh-cCceEEeeecccCCCCCCchh-hH-HHHhcccc----c--ccccCCcccH-hhHHHHHHHHHhcC---
Q 022112 150 KAMVEELLKNF-ENVCTLRVRMPISSDLSNPRN-FI-TKITRYEK----V--VNIPNSMTIL-DELLPISIEMAKRN--- 216 (302)
Q Consensus 150 K~~~E~~~~~~-~~~~~lR~~~v~g~~~~~~~~-~~-~~~~~~~~----~--~~~~~~~i~v-~D~a~~~~~~~~~~--- 216 (302)
|...|.++.+. ....++|++++++........ +. .....+.. . .+....++++ +|+++++..++..+
T Consensus 129 k~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~ 208 (350)
T d1xgka_ 129 KFTVENYVRQLGLPSTFVYAGIYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQK 208 (350)
T ss_dssp HHHHHHHHHTSSSCEEEEEECEEGGGCBSSSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhhccCceeeeeceeeccccccccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhh
Confidence 99999988664 566899999877642211111 10 01111111 0 1233456664 89999999988653
Q ss_pred -CCCeEEecCCCccCHHHHHHHHHhhcCCCCcccccc
Q 022112 217 -LTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFT 252 (302)
Q Consensus 217 -~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 252 (302)
.+..|++++ +.+|+.|+++.+.+++|.++.+..++
T Consensus 209 ~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp 244 (350)
T d1xgka_ 209 WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 244 (350)
T ss_dssp HTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred cCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECC
Confidence 355888887 78999999999999999987654443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=2.2e-16 Score=128.46 Aligned_cols=195 Identities=13% Similarity=0.027 Sum_probs=135.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|++|++++++.+++. ++|++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idil 84 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeEE
Confidence 4578999999999999999999999999887 779999999988777543 79999
Q ss_pred EEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+||.... +..+...+++...+++|+.++..+.+.+.. . +.++|++||...+.+.
T Consensus 85 innAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------------------ 146 (244)
T d1nffa_ 85 VNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------------------ 146 (244)
T ss_dssp EECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------
T ss_pred EECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc------------------
Confidence 999997631 111234567889999999999988886643 2 3469999997654311
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC-
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN- 216 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~- 216 (302)
+....|+.+|...+.+.+.++.. ..+|...+...... ..+...+.....-. ...-+...+|+|.+++.++...
T Consensus 147 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~--T~~~~~~~~~~~~~-pl~R~~~p~diA~~v~fL~s~~s 223 (244)
T d1nffa_ 147 VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVK--TPMTDWVPEDIFQT-ALGRAAEPVEVSNLVVYLASDES 223 (244)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC--SGGGTTSCTTCSCC-SSSSCBCHHHHHHHHHHHHSGGG
T ss_pred ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCcc--ChhHhhhhHHHHhc-cccCCCCHHHHHHHHHHHhChhh
Confidence 23368999999999998776533 45666555432211 11211111110000 1123678899999999988542
Q ss_pred --C-CCeEEecCCCc
Q 022112 217 --L-TGIWNFTNPGV 228 (302)
Q Consensus 217 --~-~~~~~~~~~~~ 228 (302)
. +.++.+.+|..
T Consensus 224 ~~itG~~i~vDGG~~ 238 (244)
T d1nffa_ 224 SYSTGAEFVVDGGTV 238 (244)
T ss_dssp TTCCSCEEEESTTGG
T ss_pred CCCcCCEEEECCCee
Confidence 2 34788877643
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.71 E-value=2.4e-16 Score=127.86 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=129.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------eecCCCChhhHHHHHhhc-----CCCEEEEccccCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------GSGRLENRASLEADIAAV-----KPTHVFNAAGVTG 74 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~a~~~~ 74 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|++||+||...
T Consensus 6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~ 85 (237)
T d1uzma1 6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA 85 (237)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeecccc
Confidence 5679999999999999999999999999987 789999999887776543 7999999999763
Q ss_pred CC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 75 RP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 75 ~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
.. ..+...+++...+++|+.++..+.+++.. .+. ++|++||.....+. +....|+.
T Consensus 86 ~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~------------------~~~~~Y~a 147 (237)
T d1uzma1 86 DAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI------------------GNQANYAA 147 (237)
T ss_dssp -----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------------CCHHHHH
T ss_pred cccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC------------------cccHHHHH
Confidence 11 12234568889999999999888776543 343 69999986543311 23368999
Q ss_pred hHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc---ccc-ccCCcccHhhHHHHHHHHHhcC---C-
Q 022112 149 TKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK---VVN-IPNSMTILDELLPISIEMAKRN---L- 217 (302)
Q Consensus 149 ~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~i~v~D~a~~~~~~~~~~---~- 217 (302)
+|...+.+.+.++.. ..+|...+..... ...+...+..... ... ...-+...+|+|.+++.++... .
T Consensus 148 sKaal~~lt~~lA~e~~~~gIrVN~I~PG~v--~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~it 225 (237)
T d1uzma1 148 SKAGVIGMARSIARELSKANVTANVVAPGYI--DTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYIS 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEECSB--CCHHHHHSCHHHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCC
T ss_pred HHHHHHHHHHHHHhhhhcCCceeeeeeeCcC--CChhhhccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCc
Confidence 999999988776433 3455544332211 1112221110000 000 1123567899999999988542 2
Q ss_pred CCeEEecCC
Q 022112 218 TGIWNFTNP 226 (302)
Q Consensus 218 ~~~~~~~~~ 226 (302)
+.++.+.+|
T Consensus 226 G~~i~vdGG 234 (237)
T d1uzma1 226 GAVIPVDGG 234 (237)
T ss_dssp SCEEEESTT
T ss_pred CCeEEECCC
Confidence 347887776
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=6.1e-16 Score=126.26 Aligned_cols=198 Identities=12% Similarity=0.087 Sum_probs=136.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|++|.+++++++++. ++|++||+
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn 83 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN 83 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3568999999999999999999999999987 689999999887776643 89999999
Q ss_pred cccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
||..... ..+...+++...+++|+.++.++.+++.+. + .++|++||...+.+. +..
T Consensus 84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~------------------~~~ 145 (248)
T d2d1ya1 84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------------------QEN 145 (248)
T ss_dssp CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC------------------TTB
T ss_pred CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc------------------ccc
Confidence 9976311 122345678899999999999988887543 2 368999887654321 234
Q ss_pred CchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc----ccc------ccCCcccHhhHHHHHH
Q 022112 144 SFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK----VVN------IPNSMTILDELLPISI 210 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~----~~~------~~~~~i~v~D~a~~~~ 210 (302)
..|+.+|...+.+.+.++.. ..+|+..+..... ...+......... ... ...-+...+|+|.++.
T Consensus 146 ~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~ 223 (248)
T d2d1ya1 146 AAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAI--ATEAVLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVL 223 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB--CCHHHHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCC--CCchHHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 78999999999988776433 4566655543221 1222222221110 000 0123557899999999
Q ss_pred HHHhcC---CC-CeEEecCCCccC
Q 022112 211 EMAKRN---LT-GIWNFTNPGVVS 230 (302)
Q Consensus 211 ~~~~~~---~~-~~~~~~~~~~~s 230 (302)
.++... .. ..+.+.+|-.-|
T Consensus 224 fL~S~~s~~itG~~i~vDGG~tas 247 (248)
T d2d1ya1 224 FLASEKASFITGAILPVDGGMTAS 247 (248)
T ss_dssp HHHSGGGTTCCSCEEEESTTGGGB
T ss_pred HHhCchhcCCCCcEEEcCcCcccc
Confidence 988542 23 478888775443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=2.3e-15 Score=122.37 Aligned_cols=192 Identities=15% Similarity=0.073 Sum_probs=130.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-----CCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-----KPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi~~ 69 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|++||+
T Consensus 5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnn 84 (242)
T d1ulsa_ 5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVHY 84 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEEC
Confidence 468999999999999999999999999888 788999999988777644 79999999
Q ss_pred cccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh----CCe-EEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 70 AGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK----GLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVG 143 (302)
Q Consensus 70 a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~ 143 (302)
||...... .+...+++...+++|+.++..+.+++.+. +.. ++++||....+ .+..
T Consensus 85 AG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~-------------------~~~~ 145 (242)
T d1ulsa_ 85 AGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG-------------------NLGQ 145 (242)
T ss_dssp CCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC-------------------CTTC
T ss_pred CcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC-------------------CCCC
Confidence 99763211 22345678899999999999988877653 333 45555533222 1233
Q ss_pred CchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 144 SFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 144 ~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
..|+.+|...+.+.+.++.. ..+|+ +.+--+... .+..+...+....+ ..-+...+|+|.+++.++.
T Consensus 146 ~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~p----l~R~~~pedia~~v~fL~S 221 (242)
T d1ulsa_ 146 ANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP----LGRAGKPLEVAYAALFLLS 221 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCT----TCSCBCHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCC----CCCCCCHHHHHHHHHHHhc
Confidence 78999999999988765432 33444 444322111 11223333322211 1224568999999999885
Q ss_pred cC----CCCeEEecCCCc
Q 022112 215 RN----LTGIWNFTNPGV 228 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~ 228 (302)
.. .+.++.+.+|..
T Consensus 222 ~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 222 DESSFITGQVLFVDGGRT 239 (242)
T ss_dssp GGGTTCCSCEEEESTTTT
T ss_pred hhhCCCCCcEEEECCCcc
Confidence 42 234788877654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1e-15 Score=125.48 Aligned_cols=193 Identities=15% Similarity=0.110 Sum_probs=134.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++. ++|
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~iD 90 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVD 90 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999999999999999887 789999999887776543 899
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
++||+||.......+...+++...+++|+.++..+.+++... +.++|++||...+.+
T Consensus 91 ilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~------------------ 152 (255)
T d1fmca_ 91 ILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENK------------------ 152 (255)
T ss_dssp EEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC------------------
T ss_pred EeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhcc------------------
Confidence 999999977433334456688899999999999888766442 335888888654331
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCC-------CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLS-------NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
.+....|+.+|...+.+.+.++.. ..+|+..|...... ........+....+ ..-+...+|+|.++
T Consensus 153 ~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~p----l~R~g~pedvA~~v 228 (255)
T d1fmca_ 153 NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP----IRRLGQPQDIANAA 228 (255)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCS----SCSCBCHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCC----CCCCcCHHHHHHHH
Confidence 123478999999999998776433 34555444322110 11122222222111 12245789999999
Q ss_pred HHHHhcC----CCCeEEecCCCc
Q 022112 210 IEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~~ 228 (302)
+.++... .+.++.+.+|..
T Consensus 229 ~fL~S~~s~~itG~~i~vDGG~~ 251 (255)
T d1fmca_ 229 LFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_dssp HHHHSGGGTTCCSCEEEESTTSC
T ss_pred HHHhCchhcCCcCCEEEECcCcc
Confidence 9988642 234788887753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=9.8e-16 Score=124.61 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=135.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~ 72 (302)
++++|||||++.||+.+++.|+++|++|++ +.+|++|.++++++++++ ++|++||+||.
T Consensus 5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg~ 84 (242)
T d1cyda_ 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAAL 84 (242)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCcc
Confidence 578999999999999999999999999987 778999999999999876 78999999997
Q ss_pred CCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 73 TGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 73 ~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
..... .+....++...+++|+.++..+.+++.+ . +.++|++||...+.. .|....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~------------------~~~~~~ 146 (242)
T d1cyda_ 85 VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVT------------------FPNLIT 146 (242)
T ss_dssp CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------------CTTBHH
T ss_pred ccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcccc------------------CCcccc
Confidence 63111 1224557888999999999998886643 1 235888888654331 123368
Q ss_pred hhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccc------cccCCcccHhhHHHHHHHHHhcC
Q 022112 146 YSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVV------NIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~------~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
|+.+|...+.+.+.++.. ..+|...+..... ...+...+....... ....-+...+|+|.+++.++...
T Consensus 147 Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~pl~R~~~peeva~~v~fL~S~~ 224 (242)
T d1cyda_ 147 YSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVV--LTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDR 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB--TTHHHHHHTCCHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGG
T ss_pred ccchHHHHHHHHHHHHHHhCccCeecccCCCCCc--cCHHHHhhcCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCch
Confidence 999999999998776433 4566655543211 122322222211100 01223567899999999988642
Q ss_pred ----CCCeEEecCCC
Q 022112 217 ----LTGIWNFTNPG 227 (302)
Q Consensus 217 ----~~~~~~~~~~~ 227 (302)
.+.++.+.+|.
T Consensus 225 s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 225 SASTSGGGILVDAGY 239 (242)
T ss_dssp GTTCCSSEEEESTTG
T ss_pred hcCcCCceEEeCcch
Confidence 23478887764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=5e-16 Score=126.46 Aligned_cols=195 Identities=13% Similarity=0.084 Sum_probs=134.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++.+++. ++|++
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL 82 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence 3568999999999999999999999999987 779999999887777643 79999
Q ss_pred EEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+|+....... +...+++...+++|+.++..+.+++.+ . +.++|++||...+.+.
T Consensus 83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~------------------ 144 (243)
T d1q7ba_ 83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN------------------ 144 (243)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------------------
T ss_pred hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC------------------
Confidence 999997742222 224468889999999999988887743 2 3469999997654321
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc--cc-cc-cCCcccHhhHHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK--VV-NI-PNSMTILDELLPISIEMA 213 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~--~~-~~-~~~~i~v~D~a~~~~~~~ 213 (302)
+....|+.+|...+.+.+.++.. ..+|...+..... ...+...+..... .. .. ..-+...+|+|.+++.++
T Consensus 145 ~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~ 222 (243)
T d1q7ba_ 145 GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFI--ETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVAFLA 222 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB--CCHHHHTSCHHHHHHHHTTCTTSSCBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceE--echhhhhhhhhHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Confidence 23378999999999998776433 4556555443211 1112211111000 00 01 123567899999999988
Q ss_pred hcC----CCCeEEecCCC
Q 022112 214 KRN----LTGIWNFTNPG 227 (302)
Q Consensus 214 ~~~----~~~~~~~~~~~ 227 (302)
... .+.++++.+|-
T Consensus 223 S~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 223 SDEAAYITGETLHVNGGM 240 (243)
T ss_dssp SGGGTTCCSCEEEESTTS
T ss_pred CchhcCCcCCeEEECCCe
Confidence 642 23478887764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.68 E-value=1.6e-15 Score=123.98 Aligned_cols=196 Identities=11% Similarity=-0.014 Sum_probs=135.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+.+++|||||++-||+.+++.|+++|++|++ +.+|+++++++++++++. ++|++
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 83 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL 83 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence 3578999999999999999999999999887 789999999988777643 89999
Q ss_pred EEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 67 i~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
||+|+...... .+...+++...+++|+.++..+.+++.+ . +.++|++||...+.. .
T Consensus 84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~------------------~ 145 (254)
T d1hdca_ 84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMG------------------L 145 (254)
T ss_dssp EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------------C
T ss_pred EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhccc------------------c
Confidence 99999774221 2234457888999999999988887743 2 346999999754331 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccc-----cccCCcccHhhHHHHHHHH
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVV-----NIPNSMTILDELLPISIEM 212 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~v~D~a~~~~~~ 212 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..... ...+........... ...+--...+|+|.+++.+
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v--~T~~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~fL 223 (254)
T d1hdca_ 146 ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMT--YTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKL 223 (254)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB--CCHHHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcc--cCccchhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 23478999999999998776533 4566665544311 122333322211100 1111113479999999998
Q ss_pred HhcC----CCCeEEecCCCc
Q 022112 213 AKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 213 ~~~~----~~~~~~~~~~~~ 228 (302)
+... .+.++.+.+|-.
T Consensus 224 ~S~~a~~itG~~i~vDGG~t 243 (254)
T d1hdca_ 224 LSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp HSGGGTTCCSCEEEESTTTT
T ss_pred hchhhCCCCCceEEeCCCcc
Confidence 8642 234888887743
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.68 E-value=1.9e-15 Score=123.33 Aligned_cols=194 Identities=14% Similarity=0.043 Sum_probs=130.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+.+.+|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|+
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi 83 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI 83 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4578999999999999999999999999887 789999999888776543 7999
Q ss_pred EEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+||...... .+...+++...+++|+.++..+.+++.+ .+ .++|++||.....+
T Consensus 84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~------------------ 145 (247)
T d2ew8a1 84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLK------------------ 145 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSC------------------
T ss_pred EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhccc------------------
Confidence 999999764211 2234568889999999999988887743 33 46899998754321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc------cccccCCcccHhhHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK------VVNIPNSMTILDELLPISI 210 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~------~~~~~~~~i~v~D~a~~~~ 210 (302)
.+....|+.+|...+.+.+.++.. ..+|...+..... ...+......... ......-+...+|+|.+++
T Consensus 146 ~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~l~r~~~pedvA~~v~ 223 (247)
T d2ew8a1 146 IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLV--RTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAA 223 (247)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CTTSSSCSCCCTHHHHHHHH
T ss_pred CcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCC--CCccccccccchhHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 123368999999999988776433 3455544433211 1111111111000 0001112456799999999
Q ss_pred HHHhcC----CCCeEEecCC
Q 022112 211 EMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 211 ~~~~~~----~~~~~~~~~~ 226 (302)
.++... .+.++.+.+|
T Consensus 224 fL~S~~s~~itG~~i~vDGG 243 (247)
T d2ew8a1 224 FLASDDASFITGQTLAVDGG 243 (247)
T ss_dssp HHTSGGGTTCCSCEEEESSS
T ss_pred HHhCchhcCCcCCeEEECCC
Confidence 988642 2347777776
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=4.9e-15 Score=121.07 Aligned_cols=194 Identities=16% Similarity=0.108 Sum_probs=130.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++. +
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 83 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK 83 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3568999999999999999999999999887 678999999988777643 7
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||.... +..+...+++...+++|+.++..+.+++.+. +.++|++||.....
T Consensus 84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~---------------- 147 (251)
T d1vl8a_ 84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEE---------------- 147 (251)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTC----------------
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhcc----------------
Confidence 9999999997631 1122355688899999999999988887543 24688888854321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCC---CchhhHHHHhcccccccccCCcccHhhH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLS---NPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
.+.+....|+.+|...+.+.+.++.. ..+|. +++--+... ........+....+ ..-+...+|+
T Consensus 148 -~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p----l~R~~~pedv 222 (251)
T d1vl8a_ 148 -VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP----LGRTGVPEDL 222 (251)
T ss_dssp -CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT----TSSCBCGGGG
T ss_pred -ccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCC----CCCCCCHHHH
Confidence 01122368999999999998776432 33444 443221100 00111222221111 1234568999
Q ss_pred HHHHHHHHhcC---C-CCeEEecCCC
Q 022112 206 LPISIEMAKRN---L-TGIWNFTNPG 227 (302)
Q Consensus 206 a~~~~~~~~~~---~-~~~~~~~~~~ 227 (302)
|++++.++... . +.++.+.+|-
T Consensus 223 A~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 223 KGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp HHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 99999988542 2 3478877764
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.67 E-value=1.3e-15 Score=124.96 Aligned_cols=199 Identities=18% Similarity=0.152 Sum_probs=134.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
++++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++. ++|++|
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilV 84 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDILV 84 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEEE
Confidence 468999999999999999999999999887 788999999988777653 899999
Q ss_pred EccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 68 ~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
|+||...... .+...+++...+++|+.++..+.+++.. . +.++|++||...+-+ .
T Consensus 85 nnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------------------~ 146 (256)
T d1k2wa_ 85 NNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRG------------------E 146 (256)
T ss_dssp ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------------C
T ss_pred eecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccc------------------c
Confidence 9999764211 2224567889999999999888876532 1 346999998654321 1
Q ss_pred CCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--hhhHHHHhccccc-----c-----cc-cCCcccHhh
Q 022112 141 FVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--RNFITKITRYEKV-----V-----NI-PNSMTILDE 204 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~-----~-----~~-~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..+|+..+..+....+ ..+.......... . .. .+-+...+|
T Consensus 147 ~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~e 226 (256)
T d1k2wa_ 147 ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAED 226 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHH
T ss_pred ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHH
Confidence 23478999999999998776433 4566655543211111 1111111110000 0 00 123567899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|.+++.++... .+..+.+.+|..+|
T Consensus 227 vA~~v~fL~S~~a~~iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 227 LTGMAIFLATPEADYIVAQTYNVDGGNWMS 256 (256)
T ss_dssp HHHHHHHTTSGGGTTCCSCEEEESTTSSCC
T ss_pred HHHHHHHHhCchhCCccCceEEECcchhhC
Confidence 999999977542 23488888876554
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.67 E-value=1.5e-15 Score=124.17 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=132.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
.+.+|||||++.||+.+++.|+++|++|++ +.+|++|++++.+++++. ++|
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 89 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVD 89 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCce
Confidence 568999999999999999999999999877 788999999988777653 899
Q ss_pred EEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+|+..... ..+....++...+++|+.++..+.+++.. . +.++|++||...+.+.
T Consensus 90 ilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~---------------- 153 (251)
T d2c07a1 90 ILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN---------------- 153 (251)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------------
T ss_pred eeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC----------------
Confidence 999999976421 12234468889999999999888887643 3 3469999997654321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPIS 209 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~ 209 (302)
+....|+.+|...+.+.+.++.. ..+|. +++--+... ....+...+....+ ..-+...+|+|.++
T Consensus 154 --~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~p----l~R~~~pedvA~~v 227 (251)
T d2c07a1 154 --VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP----AGRMGTPEEVANLA 227 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCT----TSSCBCHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcCC----CCCCcCHHHHHHHH
Confidence 23368999999999998776432 33444 444322111 11223333322211 12256789999999
Q ss_pred HHHHhcC----CCCeEEecCC
Q 022112 210 IEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~ 226 (302)
+.++... .+.++.+.+|
T Consensus 228 ~fL~S~~s~~itG~~i~vDGG 248 (251)
T d2c07a1 228 CFLSSDKSGYINGRVFVIDGG 248 (251)
T ss_dssp HHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhCchhCCCcCcEEEECCC
Confidence 9988642 2347777776
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.6e-15 Score=121.42 Aligned_cols=193 Identities=11% Similarity=0.063 Sum_probs=133.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-CCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-KPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~ 71 (302)
+++++|||||++.||+++++.|+++|++|++ +.+|++|.++++++++++ ++|++||+|+
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnAg 85 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA 85 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEeccc
Confidence 3569999999999999999999999999987 678999999999998876 7899999999
Q ss_pred cCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 022112 72 VTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----K--GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGS 144 (302)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~--~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~ 144 (302)
...... .+...+++...+++|+.++..+.+++.+ . +.++|++||...... .+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~------------------~~~~~ 147 (244)
T d1pr9a_ 86 VALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRA------------------VTNHS 147 (244)
T ss_dssp CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSC------------------CTTBH
T ss_pred cccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccccc------------------ccchh
Confidence 763211 1234568889999999999888876643 1 235888888654331 12336
Q ss_pred chhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCC--------chhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 145 FYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSN--------PRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 145 ~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
.|+.+|...+.+.+.++.. ..+|...+....... .......+....+ ..-+...+|+|.+++.++
T Consensus 148 ~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p----l~R~~~peevA~~v~fL~ 223 (244)
T d1pr9a_ 148 VYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP----LGKFAEVEHVVNAILFLL 223 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCT----TCSCBCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCC----CCCCcCHHHHHHHHHHHh
Confidence 8999999999998776432 345555443321100 1112222222111 123567899999999988
Q ss_pred hcC----CCCeEEecCCC
Q 022112 214 KRN----LTGIWNFTNPG 227 (302)
Q Consensus 214 ~~~----~~~~~~~~~~~ 227 (302)
... .+.++.+.+|-
T Consensus 224 S~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 224 SDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp SGGGTTCCSCEEEESTTG
T ss_pred CchhCCcCCcEEEECccH
Confidence 642 23477777763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.9e-15 Score=121.49 Aligned_cols=196 Identities=13% Similarity=0.042 Sum_probs=134.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|++|
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV 84 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV 84 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3568999999999999999999999999888 789999999988777643 799999
Q ss_pred EccccCCCCC-c-chhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPN-V-DWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 68 ~~a~~~~~~~-~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
|+||....+. . +...+++...+++|+.++..+.+++.+ .+-++|++||....-.. +
T Consensus 85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~~~------------------~ 146 (250)
T d1ydea1 85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ------------------A 146 (250)
T ss_dssp ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCC------------------T
T ss_pred ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccccc------------------c
Confidence 9999653212 2 224467889999999999888887653 35579999987654311 2
Q ss_pred CCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc---------cccc-cCCcccHhhHHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK---------VVNI-PNSMTILDELLPI 208 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~---------~~~~-~~~~i~v~D~a~~ 208 (302)
....|+.+|...+.+.+.++.. ..+|...+..... ...+...+..... .... ..-+...+|+|.+
T Consensus 147 ~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eva~~ 224 (250)
T d1ydea1 147 QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNI--WTPLWEELAALMPDPRASIREGMLAQPLGRMGQPAEVGAA 224 (250)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSB--CCHHHHHHHTTSSSHHHHHHHHHHTSTTSSCBCHHHHHHH
T ss_pred CcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCC--CChhHHHHhhcCCCHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 3378999999999998776433 3455544433211 1222222221110 0001 1235678999999
Q ss_pred HHHHHhcC---CCCeEEecCCCc
Q 022112 209 SIEMAKRN---LTGIWNFTNPGV 228 (302)
Q Consensus 209 ~~~~~~~~---~~~~~~~~~~~~ 228 (302)
++.++... .+.++.+.+|..
T Consensus 225 v~fL~Sda~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 225 AVFLASEANFCTGIELLVTGGAE 247 (250)
T ss_dssp HHHHHHHCTTCCSCEEEESTTTT
T ss_pred HHHHhCccCCCcCCeEEECCCcc
Confidence 99887542 234777777644
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.66 E-value=1.4e-15 Score=124.99 Aligned_cols=196 Identities=12% Similarity=0.036 Sum_probs=131.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 86 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKL 86 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 568999999999999999999999999887 788999999887777543 89
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|++||+||..... ..+...+++...+++|+.++..+.+++.+ .+ ..+|++||.....
T Consensus 87 DiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~---------------- 150 (261)
T d1geea_ 87 DVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI---------------- 150 (261)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS----------------
T ss_pred CEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc----------------
Confidence 9999999976421 12234567889999999999888877643 23 2377788865432
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc----cc-cc-cCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK----VV-NI-PNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~----~~-~~-~~~~i~v~D~a~ 207 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+...... ..+......... .. .. ..-+...+|+|.
T Consensus 151 --~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~--T~~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~ 226 (261)
T d1geea_ 151 --PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIN--TPINAEKFADPEQRADVESMIPMGYIGEPEEIAA 226 (261)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBC--SGGGHHHHHSHHHHHHHHTTCTTSSCBCHHHHHH
T ss_pred --cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCc--CHhHhhhcCCHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 1223468999999999998776433 34555444332111 111111111100 00 00 122557899999
Q ss_pred HHHHHHhcC----CCCeEEecCCCcc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
+++.++... .+.++.+.+|..+
T Consensus 227 ~v~fL~S~~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 227 VAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHhCchhcCCcCCeEEECCCeeC
Confidence 999988542 2348888887543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-15 Score=125.14 Aligned_cols=193 Identities=14% Similarity=0.111 Sum_probs=132.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
++.+|||||++.||+.+++.|+++|++|++ +.+|++++++++++++.. +
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR 82 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999999887 678999999888777543 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++||+|+.. ...+++..+++|+.++.++.+.+.+. +.++|++||...+-+
T Consensus 83 iDilVnnAg~~-------~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~------------- 142 (254)
T d2gdza1 83 LDILVNNAGVN-------NEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP------------- 142 (254)
T ss_dssp CCEEEECCCCC-------CSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------------
T ss_pred cCeeccccccc-------ccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC-------------
Confidence 99999999987 23567788899998887777666432 134899998654321
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHh--hcC---ceEEeeecccCCCCCCchhhHHHHhcccc------ccc------ccC
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKN--FEN---VCTLRVRMPISSDLSNPRNFITKITRYEK------VVN------IPN 197 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~--~~~---~~~lR~~~v~g~~~~~~~~~~~~~~~~~~------~~~------~~~ 197 (302)
.+....|+.+|...+.+.++ ++. ...+|+..+..... ...+...+..... ... ...
T Consensus 143 -----~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 215 (254)
T d2gdza1 143 -----VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFV--NTAILESIEKEENMGQYIEYKDHIKDMIKYY 215 (254)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCB--SSHHHHGGGCHHHHGGGGGGHHHHHHHHHHH
T ss_pred -----CCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCC--CChhhhhccccccccccHHHHHHHHhcCCCC
Confidence 12336899999999988764 221 24567655543211 1223333222110 000 011
Q ss_pred CcccHhhHHHHHHHHHhcC--CCCeEEecCCCccCHHH
Q 022112 198 SMTILDELLPISIEMAKRN--LTGIWNFTNPGVVSHNE 233 (302)
Q Consensus 198 ~~i~v~D~a~~~~~~~~~~--~~~~~~~~~~~~~s~~e 233 (302)
-+...+|+|++++.++... .+.++.+.+|..+.+.|
T Consensus 216 r~~~pedvA~~v~fL~s~~~itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 216 GILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp CCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred CCcCHHHHHHHHHHHHcCCCCCCCEEEECCCCeeeccc
Confidence 2456799999999988754 34488888877665443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.65 E-value=5.4e-15 Score=121.60 Aligned_cols=196 Identities=14% Similarity=0.087 Sum_probs=129.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV----- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~----- 61 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 82 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG 82 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3568999999999999999999999999887 678999999988877643
Q ss_pred CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
++|++||+||....... +...+++...+++|+.++..+.+++.+ .+ .++|++||...+.+
T Consensus 83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~-------------- 148 (260)
T d1x1ta1 83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVA-------------- 148 (260)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC--------------
T ss_pred CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceec--------------
Confidence 79999999997742222 234567889999999999888777643 33 46999998654331
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--hhhHHHHhcccc---------cc--c-ccCC
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--RNFITKITRYEK---------VV--N-IPNS 198 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~~~~~~~~~~~~---------~~--~-~~~~ 198 (302)
.+....|+.+|...+.+.+.++.. ..+|...+..+....+ ..++........ .. . ...-
T Consensus 149 ----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R 224 (260)
T d1x1ta1 149 ----SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQ 224 (260)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTTCC
T ss_pred ----cCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCCCC
Confidence 123468999999999988765432 3444443332211000 011111110000 00 0 0123
Q ss_pred cccHhhHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 199 MTILDELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
+...+|+|.+++.++... . +.++.+.+|
T Consensus 225 ~g~pediA~~v~fL~S~~a~~itG~~i~vDGG 256 (260)
T d1x1ta1 225 FVTPEQLGGTAVFLASDAAAQITGTTVSVDGG 256 (260)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhChhhCCCcCCEEEECcc
Confidence 567899999999988542 2 347887776
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.65 E-value=9.7e-15 Score=119.76 Aligned_cols=195 Identities=14% Similarity=0.096 Sum_probs=133.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|++|++++++.+++. +
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 83 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR 83 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 568999999999999999999999999887 678999999988777643 7
Q ss_pred CCEEEEccccCCCCC-c-chhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-V-DWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
+|++||+||...... . +...+++...+++|+.++..+.+++... +.++|++||...+-+
T Consensus 84 iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~-------------- 149 (258)
T d1iy8a_ 84 IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRG-------------- 149 (258)
T ss_dssp CSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSB--------------
T ss_pred CCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccC--------------
Confidence 999999999653111 1 2245688899999999999998877432 456999998654321
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc------cc-----c-ccCCcc
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK------VV-----N-IPNSMT 200 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~------~~-----~-~~~~~i 200 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..... ...+......... .. . ..+-+.
T Consensus 150 ----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~ 223 (258)
T d1iy8a_ 150 ----IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAI--WTPMVENSMKQLDPENPRKAAEEFIQVNPSKRYG 223 (258)
T ss_dssp ----CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSB--CSHHHHHHHHHHCTTCHHHHHHHHHTTCTTCSCB
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcc--cCHHHHHHHhhcCcccHHHHHHHHHhcCCCCCCc
Confidence 123478999999999988776433 3455544433211 1122222211100 00 0 012356
Q ss_pred cHhhHHHHHHHHHhcC----CCCeEEecCCCc
Q 022112 201 ILDELLPISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
..+|+|.+++.++... .+.++.+.+|..
T Consensus 224 ~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 224 EAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 7899999999988642 234788887754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.64 E-value=8.5e-15 Score=119.67 Aligned_cols=195 Identities=13% Similarity=0.062 Sum_probs=132.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|++|+++++++++.. ++|
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 84 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence 3579999999999999999999999999887 789999999888777643 899
Q ss_pred EEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+|+.... +..+...+++...+++|+.++..+.+++.. .+ .++|++||...+-+
T Consensus 85 iLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~---------------- 148 (251)
T d1zk4a1 85 TLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG---------------- 148 (251)
T ss_dssp EEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC----------------
T ss_pred EEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceecc----------------
Confidence 99999997631 112234567888999999999998887754 23 35788988654321
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc-----CceEEeeecccCCCCCCchhhHHHHhcccccc----cc-cCCcccHhhHHH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE-----NVCTLRVRMPISSDLSNPRNFITKITRYEKVV----NI-PNSMTILDELLP 207 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~-----~~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~----~~-~~~~i~v~D~a~ 207 (302)
.|....|+.+|...+.+.+.++ ....+|+..+..... ...+...+....... .. ..-+...+|+|.
T Consensus 149 --~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~ 224 (251)
T d1zk4a1 149 --DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYI--KTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAY 224 (251)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCB--CCHHHHTSTTHHHHHTSTTTCTTSSCBCHHHHHH
T ss_pred --CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCC--CChhHHhcCCHHHHHHHHhCCCCCCCcCHHHHHH
Confidence 1234689999999998876543 224566655543211 112222211111000 01 123567899999
Q ss_pred HHHHHHhcC---C-CCeEEecCCC
Q 022112 208 ISIEMAKRN---L-TGIWNFTNPG 227 (302)
Q Consensus 208 ~~~~~~~~~---~-~~~~~~~~~~ 227 (302)
+++.++... . +..+.+.+|.
T Consensus 225 ~v~fL~S~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 225 ICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp HHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHhCchhCCCcCcEEEECccc
Confidence 999988542 2 3478887763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.64 E-value=6.1e-15 Score=120.90 Aligned_cols=192 Identities=14% Similarity=0.062 Sum_probs=130.0
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
.+|||||++.||+.+++.|+++|++|++ +.+|++|+++++++++.. ++|++
T Consensus 3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil 82 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI 82 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence 3699999999999999999999999887 689999999888776543 79999
Q ss_pred EEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG--LILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 67 i~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
||+||....... +...+++...+++|+.++.++.+++.. .+ .++|++||...+..
T Consensus 83 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------------ 144 (255)
T d1gega_ 83 VNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG------------------ 144 (255)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------------
T ss_pred EecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhccc------------------
Confidence 999997631111 224457788999999999988887643 22 34788888654321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcc------ccc-------c-cc-cCCccc
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRY------EKV-------V-NI-PNSMTI 201 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~------~~~-------~-~~-~~~~i~ 201 (302)
.+....|+.+|...+.+.+.++.. ..+|...+..... ...+...+... ... . .. ..-+..
T Consensus 145 ~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~ 222 (255)
T d1gega_ 145 NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIV--KTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSE 222 (255)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSB--SSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCBC
T ss_pred CcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcc--cChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCcC
Confidence 123468999999999998776433 4566665544321 11222221110 000 0 00 123567
Q ss_pred HhhHHHHHHHHHhcC----CCCeEEecCCC
Q 022112 202 LDELLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 202 v~D~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
.+|+|++++.++... .+.++.+.+|-
T Consensus 223 peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 223 PEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred HHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 899999999988642 23477777764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.64 E-value=4.3e-15 Score=121.53 Aligned_cols=194 Identities=14% Similarity=0.047 Sum_probs=133.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++.+++++.++.. ++|++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil 84 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL 84 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence 4568999999999999999999999999887 678999999887777643 79999
Q ss_pred EEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNF 141 (302)
Q Consensus 67 i~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~ 141 (302)
||+||..... ..+...+++...+++|+.++..+.+++.+ .+.++|++||...+-+ .+
T Consensus 85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~------------------~~ 146 (253)
T d1hxha_ 85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLP------------------IE 146 (253)
T ss_dssp EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSC------------------CT
T ss_pred EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcC------------------cc
Confidence 9999976311 12234567889999999998888777654 3556999998654321 12
Q ss_pred CCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccc---------cccccCCcccHhhHHH
Q 022112 142 VGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEK---------VVNIPNSMTILDELLP 207 (302)
Q Consensus 142 ~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~v~D~a~ 207 (302)
....|+.+|...+.+.+.++.. ..+|...+..... ...+......... ......-+...+|+|+
T Consensus 147 ~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~~~pedvA~ 224 (253)
T d1hxha_ 147 QYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGI--YTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQ 224 (253)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEE--CCHHHHHHSCTTCCHHHHBCBTTTBTTCCEECHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCC--cCHhHHhhCcchhhHHHHHhCccccccCCCCCHHHHHH
Confidence 3368999999999988765432 3467655543211 1223332221111 0111223567899999
Q ss_pred HHHHHHhcC----CCCeEEecCC
Q 022112 208 ISIEMAKRN----LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~ 226 (302)
+++.++... .+.++++.+|
T Consensus 225 ~v~fL~S~~s~~itG~~i~VDGG 247 (253)
T d1hxha_ 225 LVLFLASDESSVMSGSELHADNS 247 (253)
T ss_dssp HHHHHHSGGGTTCCSCEEEESSS
T ss_pred HHHHHhChhhCCCcCcEEEECcc
Confidence 999988642 2347777665
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.64 E-value=6.1e-15 Score=121.22 Aligned_cols=192 Identities=13% Similarity=0.084 Sum_probs=131.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|++++++++++++.. ++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI 83 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999877 779999999888777643 89
Q ss_pred CEEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|++||+||.... +..+...+++...+++|+.++..+.+++.+. +.++|++||...+.+.
T Consensus 84 DilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~-------------- 149 (260)
T d1zema1 84 DFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP-------------- 149 (260)
T ss_dssp CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC--------------
T ss_pred CeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCC--------------
Confidence 999999996531 1222345678899999999999888877432 3469999987654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch----------------------hhHHHHhcccc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR----------------------NFITKITRYEK 191 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~----------------------~~~~~~~~~~~ 191 (302)
+....|+.+|...+.+.+.++.. ..+|...+.......+. .+...+....+
T Consensus 150 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (260)
T d1zema1 150 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 225 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC
Confidence 23368999999999998776433 45665554332111110 01111111100
Q ss_pred cccccCCcccHhhHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 192 VVNIPNSMTILDELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 192 ~~~~~~~~i~v~D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
..-+...+|+|.+++.++... . +.++.+.+|
T Consensus 226 ----l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 226 ----MRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp ----TSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred ----CCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 122456899999999988642 2 336666553
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.64 E-value=1.1e-14 Score=119.57 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=133.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
+.+|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|+
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi 82 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDV 82 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCCE
Confidence 46799999999999999999999999887 789999999988776543 7999
Q ss_pred EEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh------C-CeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK------G-LILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 66 Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~------~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
+||+||....... +...+++...+++|+.++..+.+++.+. + .++|++||...+.+
T Consensus 83 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~---------------- 146 (257)
T d2rhca1 83 LVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQG---------------- 146 (257)
T ss_dssp EEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSC----------------
T ss_pred EEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccc----------------
Confidence 9999997642222 2345678899999999999999987542 2 35788887654331
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccc------c---cc-----cc-cCCc
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYE------K---VV-----NI-PNSM 199 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~------~---~~-----~~-~~~~ 199 (302)
.+....|+.+|...+.+.+.++.. ..+|+..+..+.. ...+...+.... . .. .. ..-+
T Consensus 147 --~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~PlgR~ 222 (257)
T d2rhca1 147 --VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFV--ETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRY 222 (257)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSB--CSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTSSC
T ss_pred --cccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCC--CCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCCCC
Confidence 123478999999999998775433 5677766654321 122222221110 0 00 01 1235
Q ss_pred ccHhhHHHHHHHHHhcC---C-CCeEEecCC
Q 022112 200 TILDELLPISIEMAKRN---L-TGIWNFTNP 226 (302)
Q Consensus 200 i~v~D~a~~~~~~~~~~---~-~~~~~~~~~ 226 (302)
...+|+|.+++.++... . +.++.+.+|
T Consensus 223 ~~pedia~~v~fL~S~~s~~itG~~i~vDGG 253 (257)
T d2rhca1 223 VQPSEVAEMVAYLIGPGAAAVTAQALNVCGG 253 (257)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcCceEEECcC
Confidence 67899999999988542 2 347777765
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.63 E-value=5.7e-15 Score=120.18 Aligned_cols=190 Identities=15% Similarity=0.080 Sum_probs=131.1
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCCE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPTH 65 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d~ 65 (302)
-+|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++. ++|+
T Consensus 3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 82 (244)
T d1edoa_ 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV 82 (244)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 6899999999999999999999999876 688999999988776643 8999
Q ss_pred EEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCC
Q 022112 66 VFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139 (302)
Q Consensus 66 Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~ 139 (302)
+||+|+..... ..+...+++...+++|+.++..+.+++.+. +.++|++||...+-+.
T Consensus 83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~----------------- 145 (244)
T d1edoa_ 83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN----------------- 145 (244)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-----------------
T ss_pred cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC-----------------
Confidence 99999977422 122345688899999999999888877542 3469999997654321
Q ss_pred CCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc------hhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 140 NFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP------RNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 140 ~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
+....|+.+|...+.+.+.++.. ..+|...+..+....+ ..+...+....+ ..-+...+|+|.++.
T Consensus 146 -~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p----l~R~~~p~dvA~~v~ 220 (244)
T d1edoa_ 146 -IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP----LGRTGQPENVAGLVE 220 (244)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCT----TCSCBCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCC----CCCCcCHHHHHHHHH
Confidence 23378999999999998776543 4556555433211111 112222211111 123557899999999
Q ss_pred HHH-hcC----CCCeEEecCCC
Q 022112 211 EMA-KRN----LTGIWNFTNPG 227 (302)
Q Consensus 211 ~~~-~~~----~~~~~~~~~~~ 227 (302)
.+. ... .+.++.+.+|-
T Consensus 221 fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 221 FLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHCCchhcCCcCCeEEeCCCe
Confidence 875 321 23477777763
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.63 E-value=1.4e-14 Score=118.88 Aligned_cols=195 Identities=12% Similarity=0.017 Sum_probs=131.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh----c--C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA----V--K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~----~--~ 62 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++ . +
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~ 86 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK 86 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999887 67999999988766543 2 5
Q ss_pred CCEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||..... ..+...+++...+++|+.++..+.+++... +.++|++||......
T Consensus 87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~--------------- 151 (259)
T d2ae2a_ 87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA--------------- 151 (259)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSC---------------
T ss_pred ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccc---------------
Confidence 89999999976321 122345678899999999998888876542 236999998654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-------cc-cc-cCCcccHhh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-------VV-NI-PNSMTILDE 204 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-------~~-~~-~~~~i~v~D 204 (302)
.+....|+.+|...+.+.+.++.. ..+|...+..... ...+......... .. .. ..-+...+|
T Consensus 152 ---~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~pl~R~g~ped 226 (259)
T d2ae2a_ 152 ---VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVI--ATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKE 226 (259)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSB--CSHHHHHHTTSHHHHHHHHHHHHTSTTCSCBCHHH
T ss_pred ---cccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcc--cCHHHHhhhhchhhHHHHHHHHhcCCCCCCcCHHH
Confidence 123478999999999998776432 4566555443211 1122222211100 00 00 122557899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPG 227 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~ 227 (302)
+|.+++.++... .+.++.+.+|-
T Consensus 227 vA~~v~fL~S~~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 227 LAAMVAFLCFPAASYVTGQIIYVDGGL 253 (259)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHhCchhCCCcCcEEEECCCe
Confidence 999999988642 23477777763
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.63 E-value=1.7e-14 Score=119.14 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=132.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+.+++|||||++.||..+++.|+++|++|++ +.+|++|++++++++++. ++|
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 84 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD 84 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence 4578999999999999999999999999887 678999999988777543 899
Q ss_pred EEEEccccCCCC---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh----C-CeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRP---NVDWCESHKVETIRTNVVGTLTLADVCRDK----G-LILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 65 ~Vi~~a~~~~~~---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
++||+||..... ......+++...+++|+.++..+.+++.+. + .++|++||...+....
T Consensus 85 ~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~------------- 151 (268)
T d2bgka1 85 IMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE------------- 151 (268)
T ss_dssp EEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT-------------
T ss_pred eeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccc-------------
Confidence 999999965311 112234578889999999999888877542 2 3588888865433111
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCCC----chhhHHHHhcccccccccCCcccHhh
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLSN----PRNFITKITRYEKVVNIPNSMTILDE 204 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~i~v~D 204 (302)
+....|+.+|...+.+.+.++.. ..+|+ +++..+.... ............. ....-+...+|
T Consensus 152 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~--~~~gr~~~ped 225 (268)
T d2bgka1 152 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA--NLKGTLLRAED 225 (268)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC--SSCSCCCCHHH
T ss_pred ----ccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcc--ccCCCCcCHHH
Confidence 12247999999999988775432 33444 4433221110 1111222211111 11234667899
Q ss_pred HHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 205 LLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 205 ~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
+|.+++.++... .+.++.+.+|-..+
T Consensus 226 vA~~v~fL~S~~s~~itGq~i~VDGG~t~~ 255 (268)
T d2bgka1 226 VADAVAYLAGDESKYVSGLNLVIDGGYTRT 255 (268)
T ss_dssp HHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHhChhhCCccCceEEECcCcccC
Confidence 999999988642 23488888875443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.63 E-value=4.8e-15 Score=121.67 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=123.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhh----c--C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAA----V--K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~----~--~ 62 (302)
+.+++|||||++.||..+++.|+++|++|++ +.+|+++++++++.+++ + .
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~ 86 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK 86 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999999887 67899999887766643 2 5
Q ss_pred CCEEEEccccCC-CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTG-RPNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~-~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|++||+||... .+..+...+++...+++|+.++..+.+++.. . +.++|++||......
T Consensus 87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~--------------- 151 (259)
T d1xq1a_ 87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS--------------- 151 (259)
T ss_dssp CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------------------
T ss_pred cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccccc---------------
Confidence 899999999763 1122234568889999999999888887643 2 357999988654321
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc---cc-cc-cCCcccHhhHHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK---VV-NI-PNSMTILDELLPI 208 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~---~~-~~-~~~~i~v~D~a~~ 208 (302)
.+....|+.+|...+.+.+.++.. ..+|+..|..... ...+...+..... .. .. ..-+...+|+|.+
T Consensus 152 ---~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i--~T~~~~~~~~~~~~~~~~~~~pl~R~~~pedvA~~ 226 (259)
T d1xq1a_ 152 ---ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVI--ATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSL 226 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSC--C-------------------------CCGGGGHHH
T ss_pred ---ccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcc--cCHHhhhhchHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 123378999999999988776433 4566655543221 1112222111110 00 00 1224568999999
Q ss_pred HHHHHhcC----CCCeEEecCCCcc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
++.++... .+..+.+.+|-.+
T Consensus 227 v~fL~S~~s~~iTG~~i~vDGG~s~ 251 (259)
T d1xq1a_ 227 VAFLCMPAASYITGQTICVDGGLTV 251 (259)
T ss_dssp HHHHTSGGGTTCCSCEEECCCCEEE
T ss_pred HHHHhCchhcCCcCcEEEeCCCEEC
Confidence 99888532 2347777776443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.62 E-value=1.5e-14 Score=118.65 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=130.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHh----hc--C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIA----AV--K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~----~~--~ 62 (302)
+++++|||||++-||+++++.|+++|++|++ +.+|+++.+++++.++ .. .
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~ 84 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK 84 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999888 6799999998776654 32 5
Q ss_pred CCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
+|+++|+|+...... .+...+++...+++|+.++..+.+++... +.++|++||.....+
T Consensus 85 idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~--------------- 149 (258)
T d1ae1a_ 85 LNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSA--------------- 149 (258)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSC---------------
T ss_pred cEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccc---------------
Confidence 899999999774211 12245688899999999999888877532 335899988665331
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-------CchhhHHHHhcccccccccCCccc
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-------NPRNFITKITRYEKVVNIPNSMTI 201 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~ 201 (302)
.+....|+.+|...+.+.+.++.. ..+.|+++.-+... ....+...+....+ ..-+..
T Consensus 150 ---~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~p----lgR~~~ 222 (258)
T d1ae1a_ 150 ---LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP----MGRAGK 222 (258)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST----TCSCBC
T ss_pred ---cccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCC----CCCCcC
Confidence 123478999999999998776433 33445554322100 01112222221111 123678
Q ss_pred HhhHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 202 LDELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 202 v~D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
.+|+|.+++.++... ..| .+.+.+|-
T Consensus 223 pediA~~v~fL~S~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 223 PQEVSALIAFLCFPAASYITGQIIWADGGF 252 (258)
T ss_dssp HHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence 999999999988542 234 67777663
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.3e-14 Score=118.89 Aligned_cols=198 Identities=11% Similarity=0.038 Sum_probs=129.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------------eecCCCChhhHHHHHhhc--
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------------GSGRLENRASLEADIAAV-- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------------~~~dl~~~~~~~~~~~~~-- 61 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|++|++++++++++.
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 90 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD 90 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999999999887 568999999988776543
Q ss_pred ---CCCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 ---KPTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 ---~~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|++||+|+.... +..+...+++...+++|+.++..+.+++... +..+|++||+...+
T Consensus 91 ~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~~------------ 158 (297)
T d1yxma1 91 TFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAG------------ 158 (297)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTTC------------
T ss_pred HhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccccc------------
Confidence 89999999996631 1122344578899999999999988877543 33466665533211
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCch------hhHHHHhcccccccccCCcccHh
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPR------NFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
.|....|+.+|...+.+.+.++.. ..+|+..|.......+. ..-+.............-+...+
T Consensus 159 -------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~pe 231 (297)
T d1yxma1 159 -------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPE 231 (297)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBCTH
T ss_pred -------ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcCHH
Confidence 123378999999999988775432 34555444332111110 00011111000000012355689
Q ss_pred hHHHHHHHHHhcC----CCCeEEecCCCcc
Q 022112 204 ELLPISIEMAKRN----LTGIWNFTNPGVV 229 (302)
Q Consensus 204 D~a~~~~~~~~~~----~~~~~~~~~~~~~ 229 (302)
|+|.+++.++... .+.++.+.+|..+
T Consensus 232 dvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl 261 (297)
T d1yxma1 232 EVSSVVCFLLSPAASFITGQSVDVDGGRSL 261 (297)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHhCchhcCcCCcEEEeCcChhh
Confidence 9999999988642 3448888887543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.62 E-value=8.8e-15 Score=119.75 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=126.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCC-ChhhHHHHHhh----c-C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLE-NRASLEADIAA----V-K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~-~~~~~~~~~~~----~-~ 62 (302)
.+++|||||++.||..++++|+++|.+|++ ..+|++ +.+++++.++. + +
T Consensus 5 gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~ 84 (254)
T d1sbya1 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKT 84 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999998776 567786 44555544432 2 7
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--------CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK--------GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~--------~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++|++||.. ....++..+++|+.++.++.+++.+. +.++|++||...+.+
T Consensus 85 iDilvnnAG~~-------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~------------- 144 (254)
T d1sbya1 85 VDILINGAGIL-------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA------------- 144 (254)
T ss_dssp CCEEEECCCCC-------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-------------
T ss_pred CCEEEeCCCCC-------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC-------------
Confidence 99999999976 34677889999999998888877542 234888888665432
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccccc------ccccCCcccHhhH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKV------VNIPNSMTILDEL 205 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~------~~~~~~~i~v~D~ 205 (302)
.+....|+.+|.....+.+.++.. ..+|+..+..+.. ...+...+...... ....+.....+++
T Consensus 145 -----~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~v 217 (254)
T d1sbya1 145 -----IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGIT--RTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQC 217 (254)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSE--ESHHHHSCCCGGGSCTTHHHHHTTSCCEEHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCC--cCccccccccchhHHHHHHhccccCCCCCHHHH
Confidence 123468999999999988776543 4455544443211 11222221111000 0123344568999
Q ss_pred HHHHHHHHhcCCCC-eEEecCC
Q 022112 206 LPISIEMAKRNLTG-IWNFTNP 226 (302)
Q Consensus 206 a~~~~~~~~~~~~~-~~~~~~~ 226 (302)
|++++.+++...+| ++.+.+|
T Consensus 218 a~~~~~~~~~~~tG~vi~vdgG 239 (254)
T d1sbya1 218 GQNFVKAIEANKNGAIWKLDLG 239 (254)
T ss_dssp HHHHHHHHHHCCTTCEEEEETT
T ss_pred HHHHHHhhhCCCCCCEEEECCC
Confidence 99999888776555 7777776
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.62 E-value=1.1e-14 Score=118.12 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=121.7
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCc-------EEE------------------------eecCCCChhhHHHHHhhc---
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSID-------FTY------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~-------V~~------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
-||||||++.||+.+++.|+++|++ |+. +.+|++|++++++++++.
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999987 443 789999999887776543
Q ss_pred --CCCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 62 --KPTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 62 --~~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
++|++||+|+....... +...+++...+++|+.++..+.+++.. . +.++|++||...+.+
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~------------ 150 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKA------------ 150 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC------------
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCC------------
Confidence 79999999997632111 124567889999999999888877753 2 346999998764431
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISI 210 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~ 210 (302)
.|....|+.+|...+.+.+.++.. ..+|...+..+.. ...+...+. ......+...+|+|++++
T Consensus 151 ------~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v--~T~~~~~~~-----~~~~~~~~~PedvA~~v~ 217 (240)
T d2bd0a1 151 ------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAV--YTPMWGKVD-----DEMQALMMMPEDIAAPVV 217 (240)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCB--CSTTTCCCC-----STTGGGSBCHHHHHHHHH
T ss_pred ------CCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcc--cCchhhhcC-----HhhHhcCCCHHHHHHHHH
Confidence 123478999999999887765332 4566555443211 111111110 011122445799999999
Q ss_pred HHHhcCC
Q 022112 211 EMAKRNL 217 (302)
Q Consensus 211 ~~~~~~~ 217 (302)
.++.++.
T Consensus 218 ~l~s~~~ 224 (240)
T d2bd0a1 218 QAYLQPS 224 (240)
T ss_dssp HHHTSCT
T ss_pred HHHcCCc
Confidence 9888654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.3e-14 Score=117.46 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=125.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE--------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY--------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~--------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
.+.+|||||++.||.++++.|+++|++|++ +.+|++++++++++++.. +
T Consensus 10 ~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~ 89 (257)
T d1xg5a_ 10 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG 89 (257)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 457999999999999999999999999887 679999999887776543 7
Q ss_pred CCEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHH----HhC---CeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCR----DKG---LILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~---~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++||+|+.... +..+...+++...+++|+.++..+.+.+. +.+ .++|++||.+.+...
T Consensus 90 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------------ 157 (257)
T d1xg5a_ 90 VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------------ 157 (257)
T ss_dssp CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------------
T ss_pred CCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------------
Confidence 9999999997631 11223456788999999999888777663 322 468899886543311
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcC-----ceEEeeecccCCCCCCchhhHHHHhccccc----ccccCCcccHhhH
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFEN-----VCTLRVRMPISSDLSNPRNFITKITRYEKV----VNIPNSMTILDEL 205 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~-----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~~~~~~i~v~D~ 205 (302)
+.+....|+.+|...+.+.+.++. ...+|...+.... ....+...+...... .....-+...+|+
T Consensus 158 ----p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~--i~t~~~~~~~~~~~~~~~~~~~~~r~~~pedv 231 (257)
T d1xg5a_ 158 ----PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGV--VETQFAFKLHDKDPEKAAATYEQMKCLKPEDV 231 (257)
T ss_dssp ----SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESC--BCSSHHHHHTTTCHHHHHHHHC---CBCHHHH
T ss_pred ----CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCC--CCChhhhhcChhhHHHHHhcCCCCCCcCHHHH
Confidence 112225699999999999876542 2456665554321 112333333221110 0012336678999
Q ss_pred HHHHHHHHhcC
Q 022112 206 LPISIEMAKRN 216 (302)
Q Consensus 206 a~~~~~~~~~~ 216 (302)
|.+++.++..+
T Consensus 232 A~~v~fL~s~~ 242 (257)
T d1xg5a_ 232 AEAVIYVLSTP 242 (257)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHhCCh
Confidence 99999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.60 E-value=9.9e-15 Score=120.02 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=129.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++.+++. ++
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 88 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPI 88 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999887 788999999987777533 79
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCe-EEEEcCCccccCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLI-LINYATGCIFEYDSGHPLGSGIGFKEE 136 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~ 136 (302)
|++||+|+..... ..+...+++...+++|+.++..+.+++.+ . ... ++..||...+..... .
T Consensus 89 DilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~-----------~ 157 (260)
T d1h5qa_ 89 SGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS-----------S 157 (260)
T ss_dssp EEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE-----------E
T ss_pred cEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccc-----------c
Confidence 9999999976311 11234457888999999999888776643 2 233 555555443321110 0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCC------chhhHHHHhcccccccccCCcccHhhHHH
Q 022112 137 DTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSN------PRNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 137 ~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~------~~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
-...+....|+.+|...+.+.+.++.. ..+|+..+....... ...+...+....+ ..-+...+|+|.
T Consensus 158 ~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~p----l~R~g~pedvA~ 233 (260)
T d1h5qa_ 158 LNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP----LNRFAQPEEMTG 233 (260)
T ss_dssp TTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCT----TSSCBCGGGGHH
T ss_pred cccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHHHHHHHhcCC----CCCCcCHHHHHH
Confidence 011123368999999999998776432 445554443321111 1122222222111 122557899999
Q ss_pred HHHHHHhcC----CCCeEEecCCCc
Q 022112 208 ISIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 208 ~~~~~~~~~----~~~~~~~~~~~~ 228 (302)
+++.++... .+.++.+.+|..
T Consensus 234 ~v~fL~S~~s~~itG~~i~VDGG~~ 258 (260)
T d1h5qa_ 234 QAILLLSDHATYMTGGEYFIDGGQL 258 (260)
T ss_dssp HHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred HHHHHhcchhCCCcCceEEECCCee
Confidence 999988542 234788877653
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.60 E-value=8.5e-15 Score=118.93 Aligned_cols=193 Identities=13% Similarity=0.037 Sum_probs=129.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~V 66 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++.+++. ++|++
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL 83 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV 83 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence 3568999999999999999999999999888 789999999988777644 79999
Q ss_pred EEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCC-ccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 67 FNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATG-CIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 67 i~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~-~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
||+|+.... +..+....++...+++|+.++..+.+++...-. +.++++|+ +... .|.
T Consensus 84 innAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-------------------~~~ 144 (241)
T d2a4ka1 84 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-------------------AFG 144 (241)
T ss_dssp EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-------------------HHH
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc-------------------ccC
Confidence 999987631 112234557789999999999999998876522 34444443 2211 112
Q ss_pred CCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCC-CchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLS-NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
...|+.+|...|.+.+.++.. ..+.|+.+--+... .+......+....+ ..-+...+|+|++++.++
T Consensus 145 ~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p----~~r~~~p~dva~~v~fL~ 220 (241)
T d2a4ka1 145 LAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP----LGRAGRPEEVAQAALFLL 220 (241)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTST----TCSCBCHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCC----CCCCcCHHHHHHHHHHHh
Confidence 367999999999998776433 33444444221110 11222233322211 123557899999999988
Q ss_pred hcC---CC-CeEEecCCCc
Q 022112 214 KRN---LT-GIWNFTNPGV 228 (302)
Q Consensus 214 ~~~---~~-~~~~~~~~~~ 228 (302)
... .. .++.+.+|..
T Consensus 221 S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 221 SEESAYITGQALYVDGGRS 239 (241)
T ss_dssp SGGGTTCCSCEEEESTTTT
T ss_pred cchhCCCcCceEEeCCCcc
Confidence 642 33 4777777654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=2.7e-14 Score=117.19 Aligned_cols=194 Identities=10% Similarity=0.021 Sum_probs=128.7
Q ss_pred cccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||+| -||+.++++|+++|++|++ +.+|++|+++++++++.. +
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG 86 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence 356899999997 6999999999999999877 688999999888776542 7
Q ss_pred CCEEEEccccCCC-----CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGR-----PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~-----~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++||+|+.... +..+....++...+++|+.++..+.+++... +.++|++||......
T Consensus 87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~------------- 153 (256)
T d1ulua_ 87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKV------------- 153 (256)
T ss_dssp EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSB-------------
T ss_pred ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCC-------------
Confidence 9999999986410 0112233456778999999999998887653 335888888654331
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEe-----eecccCCCCCC---chhhHHHHhcccccccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLR-----VRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR-----~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
.|....|+.+|...+.+.+.++.. ..+| |+.+.-+.... ...+...+....+ ..-+...+
T Consensus 154 -----~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~p----l~R~~~pe 224 (256)
T d1ulua_ 154 -----VPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAP----LRRNITQE 224 (256)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHST----TSSCCCHH
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCC----CCCCcCHH
Confidence 123478999999999998775433 3344 44432221100 1122222222111 12255789
Q ss_pred hHHHHHHHHHhcC---CC-CeEEecCCCc
Q 022112 204 ELLPISIEMAKRN---LT-GIWNFTNPGV 228 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~-~~~~~~~~~~ 228 (302)
|+|.+++.++... .. .++.+.+|..
T Consensus 225 dvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 225 EVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 9999999988642 23 4788877654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.2e-14 Score=119.41 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=126.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHhhc---
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIAAV--- 61 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~~~--- 61 (302)
+.||||||++.||+++++.|+++|.+|+. +.+|++|.+++.+++++.
T Consensus 3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g 82 (285)
T d1jtva_ 3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG 82 (285)
T ss_dssp EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence 35789999999999999999999976443 678999999988887643
Q ss_pred CCCEEEEccccCCCCCcc-hhhhhHHHHHHHhHHHHHHHHHHHH----HhC-CeEEEEcCCccccCCCCCCCCCCCCCCC
Q 022112 62 KPTHVFNAAGVTGRPNVD-WCESHKVETIRTNVVGTLTLADVCR----DKG-LILINYATGCIFEYDSGHPLGSGIGFKE 135 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~----~~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e 135 (302)
.+|+++++|+....+... ...+++...+++|+.++.++.+++. +.+ .++|++||....-
T Consensus 83 ~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~--------------- 147 (285)
T d1jtva_ 83 RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM--------------- 147 (285)
T ss_dssp CCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS---------------
T ss_pred chhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcC---------------
Confidence 789999999977422222 2345778899999999988887764 334 4689998865432
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccc-------cc-------------
Q 022112 136 EDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYE-------KV------------- 192 (302)
Q Consensus 136 ~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~-------~~------------- 192 (302)
+.|....|+.+|...+.+.+.++.. ..+|...+..+.. ...+...+.... ..
T Consensus 148 ---~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (285)
T d1jtva_ 148 ---GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPV--HTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHS 222 (285)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB--CC-------CCHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCC--CChHHHHhccCHHHHhhccchhHHHHHHHHHHHH
Confidence 1223468999999999988775433 3455544433211 111222111100 00
Q ss_pred cc-ccCCcccHhhHHHHHHHHHhcCCCCeEEecCC
Q 022112 193 VN-IPNSMTILDELLPISIEMAKRNLTGIWNFTNP 226 (302)
Q Consensus 193 ~~-~~~~~i~v~D~a~~~~~~~~~~~~~~~~~~~~ 226 (302)
.. ........+|+|++++.+++.+.+...++.+.
T Consensus 223 ~~~~~~~~~~PeeVA~~v~~~~~~~~p~~ry~~g~ 257 (285)
T d1jtva_ 223 KQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTE 257 (285)
T ss_dssp HHHHHHHCBCHHHHHHHHHHHHHCSSCCSEEESCS
T ss_pred hhhhcccCCCHHHHHHHHHHHHhCCCCCeEEecHH
Confidence 00 01123457999999999999876666666653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.57 E-value=9.8e-14 Score=114.70 Aligned_cols=196 Identities=12% Similarity=0.078 Sum_probs=128.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999887 678999999887777543
Q ss_pred -CCCEEEEccccCCCCCc-----chhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCC-ccccCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPNV-----DWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATG-CIFEYDSGHPLGSG 130 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~-~vy~~~~~~~~~~~ 130 (302)
++|++||+||....... +....++...+++|+.++..+.+++.. .+..+|+++|+ +...
T Consensus 84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~---------- 153 (272)
T d1xkqa_ 84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQ---------- 153 (272)
T ss_dssp SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSS----------
T ss_pred CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhcccc----------
Confidence 79999999997631111 112235778899999999888887654 34456666553 2221
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhc--------------ccccc
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITR--------------YEKVV 193 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~--------------~~~~~ 193 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..+..... ...+...+.. .....
T Consensus 154 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (272)
T d1xkqa_ 154 --------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMV--ETGFTNAMGMPDQASQKFYNFMASHKECI 223 (272)
T ss_dssp --------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCB--CSSHHHHTTCCHHHHHHHHHHHHHCTTTC
T ss_pred --------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCC--cchhhhccCCchHHHHHHHHHHHHHhcCC
Confidence 1123368999999999988776433 3455544433211 1112211110 01101
Q ss_pred cccCCcccHhhHHHHHHHHHhc---C-CC-CeEEecCCCcc
Q 022112 194 NIPNSMTILDELLPISIEMAKR---N-LT-GIWNFTNPGVV 229 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~---~-~~-~~~~~~~~~~~ 229 (302)
. ..-+...+|+|++++.++.. . .. .++.+.+|..+
T Consensus 224 P-lgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 224 P-IGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSL 263 (272)
T ss_dssp T-TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGG
T ss_pred C-CCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHH
Confidence 1 12255789999999988842 2 33 47888877554
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.57 E-value=6.3e-14 Score=115.93 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=126.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
+++++|||||++.||+.+++.|+++|++|++ +.+|+++++++++++++.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 3568999999999999999999999999887 568999999887776543
Q ss_pred -CCCEEEEccccCCCCC-cc--hhhhhHHHHHHHhHHHHHHHHHHHHHh----CCe-EEEEcCCccccCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPN-VD--WCESHKVETIRTNVVGTLTLADVCRDK----GLI-LINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~-~~--~~~~~~~~~~~~n~~~~~~ll~~~~~~----~~~-~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++|++||+||...... .. ...+++...+++|+.++..+.+++... +.. ++++||.....
T Consensus 83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~------------ 150 (274)
T d1xhla_ 83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQ------------ 150 (274)
T ss_dssp SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSS------------
T ss_pred CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccc------------
Confidence 7999999998642111 11 133567889999999999888877543 333 55555533222
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHH-------------Hhccc-ccccc
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITK-------------ITRYE-KVVNI 195 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~-------------~~~~~-~~~~~ 195 (302)
+.+....|+.+|...+.+.+.++.. ..+|...+...... ..+... .+... ...+
T Consensus 151 ------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~--T~~~~~~~~~~~~~~~~~~~~~~~~~~iP- 221 (274)
T d1xhla_ 151 ------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVA--TGFMGAMGLPETASDKLYSFIGSRKECIP- 221 (274)
T ss_dssp ------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBC--SSHHHHTTCCHHHHHHHHHHHHHCTTTCT-
T ss_pred ------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCc--CchhhhhcccchhhHHHHHHHHHHHcCCC-
Confidence 1123368999999999988765432 34555444332111 111111 11110 1011
Q ss_pred cCCcccHhhHHHHHHHHHhc--C--CC-CeEEecCCCc
Q 022112 196 PNSMTILDELLPISIEMAKR--N--LT-GIWNFTNPGV 228 (302)
Q Consensus 196 ~~~~i~v~D~a~~~~~~~~~--~--~~-~~~~~~~~~~ 228 (302)
..-+...+|+|.+++.++.. . .. ..+.+.+|..
T Consensus 222 lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 222 VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 12255789999999988842 1 33 4788887754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.9e-14 Score=115.73 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=123.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
++.+|||||++.||+.+++.|+++|.+|++ +.+|++|++++++.++.. ++|
T Consensus 7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~id 86 (244)
T d1yb1a_ 7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVS 86 (244)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCCS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCc
Confidence 568999999999999999999999999887 789999999988776533 799
Q ss_pred EEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
++||+|+....... +.....+...+++|+.++.++.+++-. .+ .++|++||...+.+
T Consensus 87 ilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~----------------- 149 (244)
T d1yb1a_ 87 ILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVS----------------- 149 (244)
T ss_dssp EEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCC-----------------
T ss_pred eeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCC-----------------
Confidence 99999998742222 233456778999999999988876643 33 35888988664321
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc------eEEeeecccCCCCCCchhhHHH-HhcccccccccCCcccHhhHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV------CTLRVRMPISSDLSNPRNFITK-ITRYEKVVNIPNSMTILDELLPISIE 211 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~------~~lR~~~v~g~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~ 211 (302)
.|....|+.+|...+.+.+.++.. ..+|+..+..+ ++.. +.+... . .....+..+|+|+.++.
T Consensus 150 -~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG-------~v~T~~~~~~~-~-~~~~~~~pe~va~~i~~ 219 (244)
T d1yb1a_ 150 -VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPN-------FVNTGFIKNPS-T-SLGPTLEPEEVVNRLMH 219 (244)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEET-------HHHHCSTTCTH-H-HHCCCCCHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcC-------CCCChhhhCcC-c-cccCCCCHHHHHHHHHH
Confidence 123368999999999888776432 34666555432 1111 111111 0 11233467999999988
Q ss_pred HHhcCCC
Q 022112 212 MAKRNLT 218 (302)
Q Consensus 212 ~~~~~~~ 218 (302)
.+.....
T Consensus 220 ~~~~~~~ 226 (244)
T d1yb1a_ 220 GILTEQK 226 (244)
T ss_dssp HHHTTCS
T ss_pred HHhcCCc
Confidence 7776443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.57 E-value=8.9e-14 Score=114.18 Aligned_cols=193 Identities=11% Similarity=0.045 Sum_probs=127.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||++.||.++++.|+++|++|++ +.+|++|++++++.+++. .+
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 85 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGL 85 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCCC
Confidence 568999999999999999999999999876 789999998887766532 79
Q ss_pred CEEEEccccCCCCCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCC-ccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRPNVD-WCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATG-CIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~-~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++||+||........ ...+.+...+++|+.++..+++.+... +.+.++++|+ +.+.+
T Consensus 86 dilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~----------------- 148 (259)
T d1ja9a_ 86 DFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG----------------- 148 (259)
T ss_dssp EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS-----------------
T ss_pred cEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccC-----------------
Confidence 9999999977422222 345577899999999999999888764 2245555543 32221
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-----------------cccccCC
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-----------------VVNIPNS 198 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 198 (302)
.+....|+.+|...+.+++.++.. ..+|...|..+.. ...+......... -....+-
T Consensus 149 -~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R 225 (259)
T d1ja9a_ 149 -IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGV--KTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKR 225 (259)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCB--SSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTSS
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCc--cChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCCC
Confidence 123368999999999988776433 3445444332211 1112222111100 0000123
Q ss_pred cccHhhHHHHHHHHHhcC---CCC-eEEecCC
Q 022112 199 MTILDELLPISIEMAKRN---LTG-IWNFTNP 226 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~ 226 (302)
+...+|+|++++.++... ..| ++.+.+|
T Consensus 226 ~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG 257 (259)
T d1ja9a_ 226 IGYPADIGRAVSALCQEESEWINGQVIKLTGG 257 (259)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence 567899999999988652 234 7777665
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.57 E-value=1.2e-13 Score=114.39 Aligned_cols=195 Identities=15% Similarity=0.096 Sum_probs=123.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------eecCCCChhhHHHHHhhc-----CCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------GSGRLENRASLEADIAAV-----KPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------~~~dl~~~~~~~~~~~~~-----~~d~Vi 67 (302)
.+++|||||++.||+.+++.|+++|++|++ +.+|+++.+++++++++. ++|++|
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idilv 84 (276)
T d1bdba_ 5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLI 84 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccccc
Confidence 468999999999999999999999999887 788999998887766532 899999
Q ss_pred EccccCCCCCcc------hhhhhHHHHHHHhHHHHHHHHHHHH----HhCCeEEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 68 NAAGVTGRPNVD------WCESHKVETIRTNVVGTLTLADVCR----DKGLILINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 68 ~~a~~~~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
|+||....+... ....++...+++|+.++..+.+++. +.+.++|++||...+-+
T Consensus 85 nnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~~---------------- 148 (276)
T d1bdba_ 85 PNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFYP---------------- 148 (276)
T ss_dssp CCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTST----------------
T ss_pred ccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhccC----------------
Confidence 999965311111 1122477889999999888877663 44567888887643221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhc----Cc---eEEeeecccCCCCCCch--hhHHHHhccccccc-----c-cCCcccH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFE----NV---CTLRVRMPISSDLSNPR--NFITKITRYEKVVN-----I-PNSMTIL 202 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~----~~---~~lR~~~v~g~~~~~~~--~~~~~~~~~~~~~~-----~-~~~~i~v 202 (302)
.+....|+.+|...+.+.+.++ +. ..+.|+.+--+-. .+. .............. . ..-+...
T Consensus 149 --~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~-~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~p 225 (276)
T d1bdba_ 149 --NGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLR-GPSSLGMGSKAISTVPLADMLKSVLPIGRMPEV 225 (276)
T ss_dssp --TSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCC-CCGGGC---------CHHHHHTTTCTTSSCCCG
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcC-CccchhhhhhccCcHHHHHHHHhcCCCCCCcCH
Confidence 1233689999999998876643 22 2333444321110 000 01111111000000 0 1124568
Q ss_pred hhHHHHHHHHHh--c-C--CCCeEEecCCC
Q 022112 203 DELLPISIEMAK--R-N--LTGIWNFTNPG 227 (302)
Q Consensus 203 ~D~a~~~~~~~~--~-~--~~~~~~~~~~~ 227 (302)
+|+|.+++.++. + . .+..+++.+|-
T Consensus 226 eeva~~v~fL~S~~~a~~itG~~i~VDGG~ 255 (276)
T d1bdba_ 226 EEYTGAYVFFATRGDAAPATGALLNYDGGL 255 (276)
T ss_dssp GGGSHHHHHHHCHHHHTTCSSCEEEESSSG
T ss_pred HHHHHHHHHHcCCcccCCeeCcEEEECcCh
Confidence 999999988764 2 1 34588887763
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.56 E-value=9.9e-14 Score=114.18 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=124.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------------------eecCCCChhhHHHHHhhc----
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------------------GSGRLENRASLEADIAAV---- 61 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------------------~~~dl~~~~~~~~~~~~~---- 61 (302)
+.+.+|||||++.||+.+++.|+++|++|++ +.+|+++.+++++++++.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999877 678999999888777643
Q ss_pred -CCCEEEEccccCCCCC-----cchhhhhHHHHHHHhHHHHHHHHHHHHH----hCCeEEEEcCCc-cccCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPN-----VDWCESHKVETIRTNVVGTLTLADVCRD----KGLILINYATGC-IFEYDSGHPLGSG 130 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~v~~SS~~-vy~~~~~~~~~~~ 130 (302)
++|++||+||...... .....+++...+++|+.++..+.+++.+ .+..+|+++|+. .+.
T Consensus 84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~---------- 153 (264)
T d1spxa_ 84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH---------- 153 (264)
T ss_dssp SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS----------
T ss_pred CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc----------
Confidence 8999999998642100 1113356788999999999888877654 345677776643 221
Q ss_pred CCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--------h----h---hHHHHhccccc
Q 022112 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--------R----N---FITKITRYEKV 192 (302)
Q Consensus 131 ~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--------~----~---~~~~~~~~~~~ 192 (302)
+.|....|+.+|...+.+.+.++.. ..+|...+..+....+ . . ....+...
T Consensus 154 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (264)
T d1spxa_ 154 --------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC--- 222 (264)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHH---
T ss_pred --------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhc---
Confidence 1123367999999999988775433 3344433322111000 0 0 01111110
Q ss_pred ccccCCcccHhhHHHHHHHHHhc---C-CCC-eEEecCCCc
Q 022112 193 VNIPNSMTILDELLPISIEMAKR---N-LTG-IWNFTNPGV 228 (302)
Q Consensus 193 ~~~~~~~i~v~D~a~~~~~~~~~---~-~~~-~~~~~~~~~ 228 (302)
.+ .+-+...+|+|.+++.++.. . ..| .+.+.+|..
T Consensus 223 ~P-l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 223 VP-AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp CT-TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CC-CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 00 12355689999999998852 1 344 788877654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1e-13 Score=111.93 Aligned_cols=193 Identities=11% Similarity=0.036 Sum_probs=124.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE---------------eecCCCChhhHHHHHhhc-CCCEEEEccccCCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------------GSGRLENRASLEADIAAV-KPTHVFNAAGVTGRP 76 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~---------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~~~~ 76 (302)
+.+++|||||++.||+.+++.|+++|++|++ +.+|+++. ++.+++++ ++|++||+||.....
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~--~~~~~~~~g~iD~lVnnAG~~~~~ 80 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKD--LDLLFEKVKEVDILVLNAGGPKAG 80 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTC--HHHHHHHSCCCSEEEECCCCCCCB
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHH--HHHHHHHhCCCcEEEecccccCCc
Confidence 4578999999999999999999999999987 56777653 33344433 799999999966321
Q ss_pred Cc-chhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 022112 77 NV-DWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTK 150 (302)
Q Consensus 77 ~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K 150 (302)
.. +...+++...+++|+.++..+.+++.+ .+ .++|++||....... +....|+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~------------------~~~~~Y~asK 142 (234)
T d1o5ia_ 81 FFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI------------------ENLYTSNSAR 142 (234)
T ss_dssp CGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------------TTBHHHHHHH
T ss_pred chhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc------------------cccccchhHH
Confidence 11 224557788899999998888776643 33 358888886543321 2336899999
Q ss_pred HHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc---c-cc-ccCCcccHhhHHHHHHHHHhcC----CC
Q 022112 151 AMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK---V-VN-IPNSMTILDELLPISIEMAKRN----LT 218 (302)
Q Consensus 151 ~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~---~-~~-~~~~~i~v~D~a~~~~~~~~~~----~~ 218 (302)
...+.+.+.++.. ..+|...+..... ...+......... . .. ...-+...+|+|.+++.++... .+
T Consensus 143 aal~~ltk~lA~ela~~gIrVN~I~PG~v--~T~~~~~~~~~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG 220 (234)
T d1o5ia_ 143 MALTGFLKTLSFEVAPYGITVNCVAPGWT--ETERVKELLSEEKKKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTG 220 (234)
T ss_dssp HHHHHHHHHHHHHHGGGTEEEEEEEECSB--CCTTHHHHSCHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCS
T ss_pred HHHHHHHHHHHHHhcccCeEEeecccCcc--chhhhhhhcCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCcC
Confidence 9999887765433 3455544432211 1112222111100 0 00 1123567899999999988542 23
Q ss_pred CeEEecCCC
Q 022112 219 GIWNFTNPG 227 (302)
Q Consensus 219 ~~~~~~~~~ 227 (302)
.++.+.+|-
T Consensus 221 ~~i~vDGG~ 229 (234)
T d1o5ia_ 221 QTIVVDGGL 229 (234)
T ss_dssp CEEEESTTC
T ss_pred cEEEECccc
Confidence 478777763
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.56 E-value=1.6e-13 Score=112.17 Aligned_cols=191 Identities=8% Similarity=-0.009 Sum_probs=126.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhh----c-CCCEEEEcccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAA----V-KPTHVFNAAGV 72 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~----~-~~d~Vi~~a~~ 72 (302)
++|||||++.||+.+++.|+++|++|++ ..+|+++.+++++++++ + ++|++||+|+.
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~ 81 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIF 81 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 5899999999999999999999999988 45667666665554432 2 79999999986
Q ss_pred CC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 022112 73 TG--RPNVDWCESHKVETIRTNVVGTLTLADVCRD----K-GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145 (302)
Q Consensus 73 ~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~-~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~ 145 (302)
.. .+-.+...+++...+++|+.++..+.+++.. . +.++|++||...+... +....
T Consensus 82 ~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~------------------~~~~~ 143 (252)
T d1zmta1 82 APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW------------------KELST 143 (252)
T ss_dssp CCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC------------------TTCHH
T ss_pred CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc------------------ccccc
Confidence 42 1111234457888999999998888877643 2 3579999997654321 23368
Q ss_pred hhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---------chhhHHHHhcccccccccCCcccHhhHHHH
Q 022112 146 YSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---------PRNFITKITRYEKVVNIPNSMTILDELLPI 208 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~ 208 (302)
|+.+|...+.+.+.++.. ..+.|+++.-+.... ...+...+....+ ..-+...+|+|.+
T Consensus 144 Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~p----l~R~g~pedvA~~ 219 (252)
T d1zmta1 144 YTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA----LQRLGTQKELGEL 219 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS----SSSCBCHHHHHHH
T ss_pred cccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCC----CCCCcCHHHHHHH
Confidence 999999999988775432 445555553321100 0112222222111 1225578999999
Q ss_pred HHHHHhcC----CCCeEEecCCCc
Q 022112 209 SIEMAKRN----LTGIWNFTNPGV 228 (302)
Q Consensus 209 ~~~~~~~~----~~~~~~~~~~~~ 228 (302)
++.++... .+..+.+.+|-.
T Consensus 220 v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 220 VAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp HHHHHTTSCGGGTTCEEEESTTCC
T ss_pred HHHHhCchhcCCcCCeEEECCCce
Confidence 99988643 234888877643
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.7e-13 Score=111.43 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=129.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHHHhhc-CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEADIAAV-KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~~~~~-~~d~Vi~~a~~~ 73 (302)
.+++|||||++.||+.+++.|+++|++|++ ...|+.+.+.++...+.. ++|++||+|+..
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~~ 85 (245)
T d2ag5a1 6 GKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGFV 85 (245)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEeccccc
Confidence 468999999999999999999999999988 455666666655555443 899999999977
Q ss_pred CCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 74 GRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK-----GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 74 ~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
..... +...+++...+++|+.++..+.+++... +.++|++||...- ..+.+....|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~-----------------~~~~~~~~~Y~ 148 (245)
T d2ag5a1 86 HHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASS-----------------VKGVVNRCVYS 148 (245)
T ss_dssp CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT-----------------TBCCTTBHHHH
T ss_pred CCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhc-----------------cCCccchhHHH
Confidence 42111 2244578899999999999998877542 3468898875320 01122336899
Q ss_pred hhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccccc--------c-c-ccCCcccHhhHHHHHHHHHh
Q 022112 148 KTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKV--------V-N-IPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~--------~-~-~~~~~i~v~D~a~~~~~~~~ 214 (302)
.+|...+.+++.++.. ..+|...+-.+. ....+.......... . . ...-+...+|+|+++..++.
T Consensus 149 ~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~--i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedva~~v~fL~s 226 (245)
T d2ag5a1 149 TTKAAVIGLTKSVAADFIQQGIRCNCVCPGT--VDTPSLQERIQARGNPEEARNDFLKRQKTGRFATAEEIAMLCVYLAS 226 (245)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTEEEEEEEESC--EECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhhCcEEEEEeece--eechhhHhhhhhhhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhC
Confidence 9999999998876543 456655443221 111222222221110 0 0 11235678999999999986
Q ss_pred cC----CCCeEEecCCCc
Q 022112 215 RN----LTGIWNFTNPGV 228 (302)
Q Consensus 215 ~~----~~~~~~~~~~~~ 228 (302)
.. .+.++.+.+|..
T Consensus 227 ~~s~~iTG~~i~VDGG~s 244 (245)
T d2ag5a1 227 DESAYVTGNPVIIDGGWS 244 (245)
T ss_dssp GGGTTCCSCEEEECTTGG
T ss_pred hhhCCCcCceEEeCCCcC
Confidence 53 234788877643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.56 E-value=2.2e-13 Score=112.66 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=131.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||++-||+.+++.|+++|++|++ +.+|+++++++.+.+++. +
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 96 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 96 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 3579999999999999999999999999877 678999999887776543 8
Q ss_pred CCEEEEccccCCCCCc-chhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNV-DWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
+|+++|.++....... .....++...+++|+.++..+++++... +-+.++++|+.... .
T Consensus 97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~-----------------~ 159 (272)
T d1g0oa_ 97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA-----------------K 159 (272)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC-----------------S
T ss_pred CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc-----------------c
Confidence 8999999997742222 2344577888999999999999988764 33567776643211 0
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccccc-----c-----------cc-cCC
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKV-----V-----------NI-PNS 198 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~-----~-----------~~-~~~ 198 (302)
+.+....|+.+|...+.+.+.++.. ..+|+..|-.... ...+...+...... . .. ..-
T Consensus 160 ~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR 237 (272)
T d1g0oa_ 160 AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGI--KTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRR 237 (272)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCB--SSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTCS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCc--CChHHHHHHHhhhhcccccchHHHHHHHHHccCCCCC
Confidence 1123367999999999988765432 3455544433211 12233332221100 0 00 123
Q ss_pred cccHhhHHHHHHHHHhcC---CCC-eEEecCCC
Q 022112 199 MTILDELLPISIEMAKRN---LTG-IWNFTNPG 227 (302)
Q Consensus 199 ~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~ 227 (302)
+...+|+|.+++.++... .+| ++.+.+|.
T Consensus 238 ~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 238 VGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 667899999999988642 234 77777764
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.1e-13 Score=115.74 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=123.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------------------eecCCCChhhHHHHHh----
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------------------GSGRLENRASLEADIA---- 59 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------------------~~~dl~~~~~~~~~~~---- 59 (302)
++++|||||++.||+.+++.|+++|++|++ ..+|+.+.+++++.++
T Consensus 7 gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~ 86 (302)
T d1gz6a_ 7 GRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTALD 86 (302)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 468999999999999999999999999986 3456666666555443
Q ss_pred hc-CCCEEEEccccCCCCC-cchhhhhHHHHHHHhHHHHHHHHHHHHH----hC-CeEEEEcCCccccCCCCCCCCCCCC
Q 022112 60 AV-KPTHVFNAAGVTGRPN-VDWCESHKVETIRTNVVGTLTLADVCRD----KG-LILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 60 ~~-~~d~Vi~~a~~~~~~~-~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
++ ++|++||+||...... .+...+++...+++|+.++..+.+++.. .+ -++|++||...+-+.
T Consensus 87 ~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~---------- 156 (302)
T d1gz6a_ 87 TFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGN---------- 156 (302)
T ss_dssp HTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC----------
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCC----------
Confidence 22 7999999999774221 2224457889999999999988887643 33 479999987643311
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc--hhhHHHHhcccccccccCCcccHhhHHH
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP--RNFITKITRYEKVVNIPNSMTILDELLP 207 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~D~a~ 207 (302)
+....|+.+|...+.+.+.++.. ..+|+..+........ ..+-..+ ..++..+|+|.
T Consensus 157 --------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~~~~~----------~~~~~PedvA~ 218 (302)
T d1gz6a_ 157 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVMPEDL----------VEALKPEYVAP 218 (302)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGSCHHH----------HHHSCGGGTHH
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcCcHhh----------HhcCCHHHHHH
Confidence 23478999999999998776433 4566655443211010 0010111 11234699999
Q ss_pred HHHHHHhcC---CCCeEEecCC
Q 022112 208 ISIEMAKRN---LTGIWNFTNP 226 (302)
Q Consensus 208 ~~~~~~~~~---~~~~~~~~~~ 226 (302)
+++.++... .+.++.+.+|
T Consensus 219 ~v~fL~S~~a~itG~~i~vdGG 240 (302)
T d1gz6a_ 219 LVLWLCHESCEENGGLFEVGAG 240 (302)
T ss_dssp HHHHHTSTTCCCCSCEEEEETT
T ss_pred HHHHHcCCCcCCCCcEEEeCCC
Confidence 999887532 2336666554
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=8e-14 Score=112.83 Aligned_cols=178 Identities=11% Similarity=-0.011 Sum_probs=117.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe--------------ecCCCChhhHH-------HHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG--------------SGRLENRASLE-------ADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~--------------~~dl~~~~~~~-------~~~~~~~~d~Vi~~a~~ 72 (302)
+++||||||+|.||+.+++.|+++|++|.++ ..|..+.+... +.+...++|++||+||.
T Consensus 2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~lInnAG~ 81 (236)
T d1dhra_ 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGG 81 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccccccceeecccCcHHHHHHHHHHHHHHhCCCCceEEEECCcc
Confidence 5799999999999999999999999999873 22233333322 22222368999999984
Q ss_pred CC--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 022112 73 TG--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYS 147 (302)
Q Consensus 73 ~~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~ 147 (302)
.. .+......++++..+++|+.++.++.+++.+. +.++|++||...+.+. +....|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~------------------~~~~~Y~ 143 (236)
T d1dhra_ 82 WAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT------------------PGMIGYG 143 (236)
T ss_dssp CCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------------TTBHHHH
T ss_pred cccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc------------------cCCcccH
Confidence 32 11112234567788999999999988888754 3468999887654321 2336899
Q ss_pred hhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhc
Q 022112 148 KTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 148 ~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~ 215 (302)
.+|...+.+.+.++.. ..+|...+.... ....+.+...... ....++..+|+|+.+..++..
T Consensus 144 asKaal~~lt~~la~El~~~~~gI~vn~v~PG~--v~T~~~~~~~~~~----~~~~~~~pe~va~~~~~l~s~ 210 (236)
T d1dhra_ 144 MAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVT--LDTPMNRKSMPEA----DFSSWTPLEFLVETFHDWITG 210 (236)
T ss_dssp HHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESC--EECHHHHHHSTTS----CGGGSEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCcEEEEEEEecc--CcCCcchhhCccc----hhhcCCCHHHHHHHHHHHhCC
Confidence 9999999999887543 346665554321 1122333322211 123466789999999988864
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.50 E-value=4.2e-13 Score=112.24 Aligned_cols=194 Identities=11% Similarity=0.013 Sum_probs=123.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~d 64 (302)
+++|||||+|.||++++++|+++|++|++ +.+|+++.+++...+... ++|
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD 105 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPN 105 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccccc
Confidence 68999999999999999999999999988 678999999887666532 899
Q ss_pred EEEEccccCCCCCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHh-----CCe-EEEEcCCccccCCCCCCCCCCCCCCCCC
Q 022112 65 HVFNAAGVTGRPNVD-WCESHKVETIRTNVVGTLTLADVCRDK-----GLI-LINYATGCIFEYDSGHPLGSGIGFKEED 137 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~-~v~~SS~~vy~~~~~~~~~~~~~~~e~~ 137 (302)
++||+|+........ ....+....+.+|..+...+...+... ... ++.+||......
T Consensus 106 ilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~---------------- 169 (294)
T d1w6ua_ 106 IVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG---------------- 169 (294)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC----------------
T ss_pred hhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhc----------------
Confidence 999999976321111 123356677778888777666554321 223 555555433221
Q ss_pred CCCCCCCchhhhHHHHHHHHHhhcCc---eEEee-----ecccCCCCC----CchhhHHHHhcccccccccCCcccHhhH
Q 022112 138 TPNFVGSFYSKTKAMVEELLKNFENV---CTLRV-----RMPISSDLS----NPRNFITKITRYEKVVNIPNSMTILDEL 205 (302)
Q Consensus 138 ~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~-----~~v~g~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~D~ 205 (302)
.+....|+.+|...+.+.+.++.. ..+|+ +.+.-+... ....+...+....+ .+-+...+|+
T Consensus 170 --~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~p----l~R~~~pedi 243 (294)
T d1w6ua_ 170 --SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP----CGRLGTVEEL 243 (294)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT----TSSCBCHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCC----CCCCCCHHHH
Confidence 122367999999999998775432 34444 443221100 01112222222111 1235578999
Q ss_pred HHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 206 LPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 206 a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
|+++..++... .+.++.+.+|..+.
T Consensus 244 A~~v~fL~sd~s~~itG~~i~vDGG~~l~ 272 (294)
T d1w6ua_ 244 ANLAAFLCSDYASWINGAVIKFDGGEEVL 272 (294)
T ss_dssp HHHHHHHTSGGGTTCCSCEEEESTTHHHH
T ss_pred HHHHHHHhCchhcCCCCcEEEECCChhhe
Confidence 99999988642 33488888875443
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.49 E-value=1.1e-13 Score=112.05 Aligned_cols=176 Identities=14% Similarity=0.037 Sum_probs=112.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec--------------CCCChhhH-------HHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG--------------RLENRASL-------EADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~--------------dl~~~~~~-------~~~~~~~~~d~Vi~~a~~~ 73 (302)
.|||||||+|.||+.++++|+++|++|+++.. |..+.+.. ...++..++|++||+||..
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~linnAG~~ 82 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGW 82 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcccccceeccccCchhHHHHHHHHHHHHhcCCCeeEEEECCccc
Confidence 38999999999999999999999999988433 23322222 2222223689999999954
Q ss_pred C--CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhh
Q 022112 74 G--RPNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSK 148 (302)
Q Consensus 74 ~--~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~ 148 (302)
. .+......+.++..+++|+.++..+.+++... +.++|++||...+.+ .+....|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~------------------~~~~~~Y~a 144 (235)
T d1ooea_ 83 AGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------------TPSMIGYGM 144 (235)
T ss_dssp CCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------------CTTBHHHHH
T ss_pred ccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCC------------------cccccchHH
Confidence 2 11112223456678999999998888888664 335888888654432 123478999
Q ss_pred hHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHh
Q 022112 149 TKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAK 214 (302)
Q Consensus 149 ~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~ 214 (302)
+|...+.+.+.++.. ..+|...+.... ....+....+... ....++..+|+++.++..+.
T Consensus 145 sKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~--~~T~~~~~~~~~~----~~~~~~~~~~va~~~~~~l~ 209 (235)
T d1ooea_ 145 AKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVT--LDTPMNRKWMPNA----DHSSWTPLSFISEHLLKWTT 209 (235)
T ss_dssp HHHHHHHHHHHHHSTTSSCCTTCEEEEEEESC--BCCHHHHHHSTTC----CGGGCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEecCc--CcCcchhhhCcCC----ccccCCCHHHHHHHHHHHhc
Confidence 999999998876422 233443332211 1223444333221 23346778999999876554
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.49 E-value=8.7e-13 Score=107.45 Aligned_cols=143 Identities=17% Similarity=0.095 Sum_probs=100.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHH---hCCCcEEE-----------------------eecCCCChhhHHHHHhh-------
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQ---AQSIDFTY-----------------------GSGRLENRASLEADIAA------- 60 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~---~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~------- 60 (302)
|++||||||++.||..+++.|+ ++|++|++ +.+|++|+++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 81 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD 81 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence 5689999999999999999997 46888776 78899999888766552
Q ss_pred cCCCEEEEccccCCCCC-c-chhhhhHHHHHHHhHHHHHHHHHHHHHh----------------CCeEEEEcCCccccCC
Q 022112 61 VKPTHVFNAAGVTGRPN-V-DWCESHKVETIRTNVVGTLTLADVCRDK----------------GLILINYATGCIFEYD 122 (302)
Q Consensus 61 ~~~d~Vi~~a~~~~~~~-~-~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------------~~~~v~~SS~~vy~~~ 122 (302)
.++|++||+||...... . +....+....+++|+.++..+.+++... ..++|.+||.. +..
T Consensus 82 ~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~--g~~ 159 (248)
T d1snya_ 82 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL--GSI 159 (248)
T ss_dssp GCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG--GCS
T ss_pred CCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc--ccc
Confidence 36999999999753111 1 1233457789999999999888776431 23588888853 211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecc
Q 022112 123 SGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMP 171 (302)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v 171 (302)
. ..+.+....|+.+|.....+.+.++.. ..+|+..+
T Consensus 160 ~-------------~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v 198 (248)
T d1snya_ 160 Q-------------GNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSL 198 (248)
T ss_dssp T-------------TCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred C-------------CCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 1 112233358999999999887665422 34454443
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.48 E-value=6.2e-13 Score=109.10 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=122.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-EEE---------------------------eecCCCChhhHHHHHhhc----C
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-FTY---------------------------GSGRLENRASLEADIAAV----K 62 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V~~---------------------------~~~dl~~~~~~~~~~~~~----~ 62 (302)
.+||||||+|.||..++++|+++|.. |++ +.+|++|.+++.++++.. .
T Consensus 10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~~ 89 (259)
T d2fr1a1 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDVP 89 (259)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccccc
Confidence 38999999999999999999999985 443 678999999988887643 5
Q ss_pred CCEEEEccccCCCCCcc-hhhhhHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEcCCccccCCCCCCCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVD-WCESHKVETIRTNVVGTLTLADVCRDKGL-ILINYATGCIFEYDSGHPLGSGIGFKEEDTPN 140 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~-~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~ 140 (302)
+|.|||+++........ ....+....+..|+.++.++.++++..+. ++|++||....-+.
T Consensus 90 i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~------------------ 151 (259)
T d2fr1a1 90 LSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGA------------------ 151 (259)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCC------------------
T ss_pred ccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCC------------------
Confidence 88999999977422111 23345677889999999999998877654 58888887643211
Q ss_pred CCCCchhhhHHHHHHHHHhhcC----ceEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC
Q 022112 141 FVGSFYSKTKAMVEELLKNFEN----VCTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 141 ~~~~~Y~~~K~~~E~~~~~~~~----~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
+....|+.+|...+.+.+.+.. ...+.|+.+.+.... .......+.. .....+..+++++++..++..+
T Consensus 152 ~~~~~YaAaka~l~~la~~~~~~Gi~v~~I~pg~~~~~g~~-~~~~~~~~~~------~G~~~~~~~~~~~~l~~~l~~~ 224 (259)
T d2fr1a1 152 PGLGGYAPGNAYLDGLAQQRRSDGLPATAVAWGTWAGSGMA-EGPVADRFRR------HGVIEMPPETACRALQNALDRA 224 (259)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHHTTCCCEEEEECCBC-------------CTT------TTEECBCHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhHHHHHHHHHhCCCCEEECCCCcccCCccc-cchHHHHHHh------cCCCCCCHHHHHHHHHHHHhCC
Confidence 2347899999999988766533 256666665543221 1111111110 1123467899999999999875
Q ss_pred CCC
Q 022112 217 LTG 219 (302)
Q Consensus 217 ~~~ 219 (302)
...
T Consensus 225 ~~~ 227 (259)
T d2fr1a1 225 EVC 227 (259)
T ss_dssp CSS
T ss_pred Cce
Confidence 443
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.2e-12 Score=106.29 Aligned_cols=185 Identities=9% Similarity=-0.022 Sum_probs=123.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
++++|||||++.||.++++.|+++|++|++ +.+|..+.+......... .+
T Consensus 14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~ 93 (269)
T d1xu9a_ 14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGL 93 (269)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhCCc
Confidence 468999999999999999999999999988 455666666655444322 78
Q ss_pred CEEEEccccCCCC-CcchhhhhHHHHHHHhHHHHHHHHHHHH----HhCCeEEEEcCCccccCCCCCCCCCCCCCCCCCC
Q 022112 64 THVFNAAGVTGRP-NVDWCESHKVETIRTNVVGTLTLADVCR----DKGLILINYATGCIFEYDSGHPLGSGIGFKEEDT 138 (302)
Q Consensus 64 d~Vi~~a~~~~~~-~~~~~~~~~~~~~~~n~~~~~~ll~~~~----~~~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~ 138 (302)
|++++.|+..... .......+....+++|+.++..+.+.+. +.+.++|++||...+-
T Consensus 94 ~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~~------------------ 155 (269)
T d1xu9a_ 94 DMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV------------------ 155 (269)
T ss_dssp SEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS------------------
T ss_pred cccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhcC------------------
Confidence 9999999876311 1223445677889999998887777664 3355788888865432
Q ss_pred CCCCCCchhhhHHHHHHHHHhhcCc-----eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 139 PNFVGSFYSKTKAMVEELLKNFENV-----CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 139 ~~~~~~~Y~~~K~~~E~~~~~~~~~-----~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
+.|....|+.+|...+.+.+.++.. ..+|+..+..+. ....+......+.. .......+++|+.++..+
T Consensus 156 ~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~--v~T~~~~~~~~~~~----~~~~~~~e~~a~~i~~~~ 229 (269)
T d1xu9a_ 156 AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGL--IDTETAMKAVSGIV----HMQAAPKEECALEIIKGG 229 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECC--BCCHHHHHHSCGGG----GGGCBCHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCc--CCCcHHHHhccCCc----cccCCCHHHHHHHHHHHh
Confidence 1233479999999999988776432 345655544321 12334443333222 122345789999988877
Q ss_pred hcCCCCeEE
Q 022112 214 KRNLTGIWN 222 (302)
Q Consensus 214 ~~~~~~~~~ 222 (302)
.....++|.
T Consensus 230 ~~~~~~i~~ 238 (269)
T d1xu9a_ 230 ALRQEEVYY 238 (269)
T ss_dssp HTTCSEEEE
T ss_pred hcCCCEEEc
Confidence 755544443
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.45 E-value=1.6e-12 Score=105.92 Aligned_cols=191 Identities=14% Similarity=0.029 Sum_probs=116.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEE---------------------eecCCCChhhHHHHHhh-------cCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTY---------------------GSGRLENRASLEADIAA-------VKPT 64 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~---------------------~~~dl~~~~~~~~~~~~-------~~~d 64 (302)
++||||||++.||..++++|+++|+ .|++ +.+|+++.++++++++. ..+|
T Consensus 4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~id 83 (250)
T d1yo6a1 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLS 83 (250)
T ss_dssp SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCeE
Confidence 6899999999999999999999996 4554 78899999887766542 2599
Q ss_pred EEEEccccCCC--CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh----------------CCeEEEEcCCccccCCCCCC
Q 022112 65 HVFNAAGVTGR--PNVDWCESHKVETIRTNVVGTLTLADVCRDK----------------GLILINYATGCIFEYDSGHP 126 (302)
Q Consensus 65 ~Vi~~a~~~~~--~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~----------------~~~~v~~SS~~vy~~~~~~~ 126 (302)
++||+||.... +.......+....+++|+.++..+.+++... ...++.+|+...+-...
T Consensus 84 ilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~--- 160 (250)
T d1yo6a1 84 LLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDN--- 160 (250)
T ss_dssp EEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTC---
T ss_pred EEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCC---
Confidence 99999997521 1112234567789999999998888776421 12356665543322111
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccccccccCCcccHh
Q 022112 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 127 ~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
.......+...|+.+|.....+.+.++.. ..+|+..+..+.. ...+.. ....+..+
T Consensus 161 --------~~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v--~T~m~~-----------~~~~~~~e 219 (250)
T d1yo6a1 161 --------TSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWV--QTNLGG-----------KNAALTVE 219 (250)
T ss_dssp --------CSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC--------------------------H
T ss_pred --------cccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCC--CCCCCC-----------CCCCCCHH
Confidence 00111122256999999999988765432 4455544433211 111111 01123568
Q ss_pred hHHHHHHHHHhcC---CCCeEEecCCCcc
Q 022112 204 ELLPISIEMAKRN---LTGIWNFTNPGVV 229 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~~~~~~~~~~~~ 229 (302)
+.++.++..+.+. .+|.|...++.+.
T Consensus 220 ~~a~~~~~~~~~~~~~~sG~f~~~~g~p~ 248 (250)
T d1yo6a1 220 QSTAELISSFNKLDNSHNGRFFMRNLKPY 248 (250)
T ss_dssp HHHHHHHHHHTTCCGGGTTCEEETTEEEC
T ss_pred HHHHHHHHHHhcCCCCCCeEEECCCCeeC
Confidence 8888888888652 3455544444544
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.42 E-value=3.4e-12 Score=104.56 Aligned_cols=184 Identities=12% Similarity=0.062 Sum_probs=123.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh---CCCcEEE--------------------------eecCCCChhhHHHHHhh---
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA---QSIDFTY--------------------------GSGRLENRASLEADIAA--- 60 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~---~g~~V~~--------------------------~~~dl~~~~~~~~~~~~--- 60 (302)
.++.++||||++.||..++++|++ +|++|++ +.+|++++++++++++.
T Consensus 5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~ 84 (259)
T d1oaaa_ 5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE 84 (259)
T ss_dssp BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 345799999999999999999975 7888776 67899999988777642
Q ss_pred ------cCCCEEEEccccCCCCCc----chhhhhHHHHHHHhHHHHHHHHHHHHHh----C---CeEEEEcCCccccCCC
Q 022112 61 ------VKPTHVFNAAGVTGRPNV----DWCESHKVETIRTNVVGTLTLADVCRDK----G---LILINYATGCIFEYDS 123 (302)
Q Consensus 61 ------~~~d~Vi~~a~~~~~~~~----~~~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~v~~SS~~vy~~~~ 123 (302)
..+|++++.|+....... .....++...+++|+.++..+.+++... + .++|++||...+.+
T Consensus 85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~-- 162 (259)
T d1oaaa_ 85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP-- 162 (259)
T ss_dssp SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC--
T ss_pred hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC--
Confidence 146789999986521111 1233467789999999999999988653 2 24888888654331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcC-ceEEeeecccCCCCCCchhhHHHHhccccc---------c
Q 022112 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITRYEKV---------V 193 (302)
Q Consensus 124 ~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~-~~~lR~~~v~g~~~~~~~~~~~~~~~~~~~---------~ 193 (302)
.+....|+.+|...+.+.+.++. ...+|+..+..+.. ...+.......... .
T Consensus 163 ----------------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i--~T~~~~~~~~~~~~~~~~~~~~~~ 224 (259)
T d1oaaa_ 163 ----------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPL--DNDMQQLARETSKDPELRSKLQKL 224 (259)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSB--SSHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ----------------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCC--CCHHHHHhhhcCCCHHHHHHHHhc
Confidence 22347899999999999877643 35567665543221 12233332221110 0
Q ss_pred cccCCcccHhhHHHHHHHHHhcC
Q 022112 194 NIPNSMTILDELLPISIEMAKRN 216 (302)
Q Consensus 194 ~~~~~~i~v~D~a~~~~~~~~~~ 216 (302)
....-+...+|+|++++.+++..
T Consensus 225 ~~~~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 225 KSDGALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp HHTTCSBCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhhhc
Confidence 01223567899999999988753
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=4.7e-12 Score=103.68 Aligned_cols=195 Identities=10% Similarity=0.072 Sum_probs=121.3
Q ss_pred cccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+++++|||||+| .||+++++.|+++|++|++ ...|..+..++...+.+. .
T Consensus 4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (258)
T d1qsga_ 4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK 83 (258)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcccc
Confidence 357999999998 7899999999999999987 444555555554444322 6
Q ss_pred CCEEEEccccCCCCCcc------hhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCccccCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVD------WCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGCIFEYDSGHPLGSGIGF 133 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~------~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~vy~~~~~~~~~~~~~~ 133 (302)
+|++||.|+........ ...........+|..+...+.+++... +..+|++||.....
T Consensus 84 ~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~------------- 150 (258)
T d1qsga_ 84 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER------------- 150 (258)
T ss_dssp EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-------------
T ss_pred cceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc-------------
Confidence 78999999876311110 011234556777888888888877664 22377777754322
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCC---chhhHHHHhcccccccccCCcccH
Q 022112 134 KEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSN---PRNFITKITRYEKVVNIPNSMTIL 202 (302)
Q Consensus 134 ~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~---~~~~~~~~~~~~~~~~~~~~~i~v 202 (302)
+.|....|+.+|...+.+++.++.. ..+.|+.+.-+.... ...+...+....+ ..-+...
T Consensus 151 -----~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~p----l~R~~~p 221 (258)
T d1qsga_ 151 -----AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP----IRRTVTI 221 (258)
T ss_dssp -----BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHST----TSSCCCH
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCC----CCCCcCH
Confidence 1123368999999999988765432 445666654321110 1112222221111 1235678
Q ss_pred hhHHHHHHHHHhcC---CC-CeEEecCCCcc
Q 022112 203 DELLPISIEMAKRN---LT-GIWNFTNPGVV 229 (302)
Q Consensus 203 ~D~a~~~~~~~~~~---~~-~~~~~~~~~~~ 229 (302)
+|+|.++..++... .. .++.+.+|..+
T Consensus 222 eeia~~v~fL~s~~s~~itG~~i~vDGG~~i 252 (258)
T d1qsga_ 222 EDVGNSAAFLCSDLSAGISGEVVHVDGGFSI 252 (258)
T ss_dssp HHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHHHHHhCchhcCccCceEEECcCHHH
Confidence 99999999988642 33 47888777543
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=8.2e-12 Score=101.58 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=114.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee---------------------cCCCChhhHHHHHh-----hcCCCEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS---------------------GRLENRASLEADIA-----AVKPTHV 66 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~---------------------~dl~~~~~~~~~~~-----~~~~d~V 66 (302)
+++.+|||||++.||..++++|+++|++|++.. .|+.+...+++... ....|.+
T Consensus 4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (248)
T d2o23a1 4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA 83 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999998843 34445444433332 1267888
Q ss_pred EEccccCCCCC-------cchhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCCCCCCC
Q 022112 67 FNAAGVTGRPN-------VDWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDSGHPLG 128 (302)
Q Consensus 67 i~~a~~~~~~~-------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~~~~~~ 128 (302)
++.++....+. .....+.+...+++|+.++.++.+++... +.++|++||...+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~------- 156 (248)
T d2o23a1 84 VNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG------- 156 (248)
T ss_dssp EECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHC-------
T ss_pred ccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccC-------
Confidence 88776542111 11123467788999999999999888543 125899998765432
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-----cccccCCcc
Q 022112 129 SGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-----VVNIPNSMT 200 (302)
Q Consensus 129 ~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~i 200 (302)
.+....|+.+|...+.+.+.++.. ..+|...+..+.. ...+...+..... ......-+.
T Consensus 157 -----------~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i--~T~~~~~~~~~~~~~~~~~~pl~~R~g 223 (248)
T d2o23a1 157 -----------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLF--GTPLLTSLPEKVCNFLASQVPFPSRLG 223 (248)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB--CCC----------CHHHHTCSSSCSCB
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCce--ecchhhcCCHHHHHHHHhcCCCCCCCc
Confidence 123478999999999998776443 3455544332211 1111111111000 001112356
Q ss_pred cHhhHHHHHHHHHhc
Q 022112 201 ILDELLPISIEMAKR 215 (302)
Q Consensus 201 ~v~D~a~~~~~~~~~ 215 (302)
..+|+|++++.+++.
T Consensus 224 ~peevA~~v~fL~s~ 238 (248)
T d2o23a1 224 DPAEYAHLVQAIIEN 238 (248)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhC
Confidence 789999999988874
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=5.8e-12 Score=104.56 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=121.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------------------------------------------ecCCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------------------------------------------SGRLEN 50 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------------------------------------------~~dl~~ 50 (302)
+..+|||||++.||+.+++.|+++|++|++. .+|+++
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 3468999999999999999999999998761 234666
Q ss_pred hhhHHHHHhhc-----CCCEEEEccccCCCCCcch-h--------------hhhHHHHHHHhHHHHHHHHHHHHHh----
Q 022112 51 RASLEADIAAV-----KPTHVFNAAGVTGRPNVDW-C--------------ESHKVETIRTNVVGTLTLADVCRDK---- 106 (302)
Q Consensus 51 ~~~~~~~~~~~-----~~d~Vi~~a~~~~~~~~~~-~--------------~~~~~~~~~~n~~~~~~ll~~~~~~---- 106 (302)
.+++++++++. ++|++||+||......... . .......+.+|+.++..+.+++.+.
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 77766665432 8999999999763111111 1 1122346788888888888776432
Q ss_pred -----C--CeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCC
Q 022112 107 -----G--LILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDL 176 (302)
Q Consensus 107 -----~--~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~ 176 (302)
+ ..++.++|..... +.+....|+.+|...+.+.+.++.. ..+|...+-....
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t 223 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQ------------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 223 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTS------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHhcCCCCcccccccccccC------------------CccceeeeccccccchhhhHHHHHHhCCccccccccccccc
Confidence 1 1355555543221 1223468999999999998776433 4455544432210
Q ss_pred C----CchhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC----CCCeEEecCCCccC
Q 022112 177 S----NPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN----LTGIWNFTNPGVVS 230 (302)
Q Consensus 177 ~----~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~----~~~~~~~~~~~~~s 230 (302)
. .+..+........+ ...-+...+|+|.+++.++... .+.++.+.+|..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~p---l~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 224 VLVDDMPPAVWEGHRSKVP---LYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSLT 282 (284)
T ss_dssp CCGGGSCHHHHHHHHTTCT---TTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred cccccCCHHHHHHHHhcCC---CCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChhcc
Confidence 0 11223333332221 1233557899999999988642 23478888876654
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=5e-11 Score=96.28 Aligned_cols=193 Identities=14% Similarity=0.116 Sum_probs=121.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------eecCCCChhhHHHHHh----hcCCCEEEEccccCCCC--
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------GSGRLENRASLEADIA----AVKPTHVFNAAGVTGRP-- 76 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------~~~dl~~~~~~~~~~~----~~~~d~Vi~~a~~~~~~-- 76 (302)
+++|||||++.||+.+++.|+++|++|++ ..+|+.+......... ....+.+++.++.....
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKI 81 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcccccceEeeccccchhhhHHHHHhhhccccccchhhhhhccccccc
Confidence 58999999999999999999999999988 5667776655444433 23445555555433100
Q ss_pred ---CcchhhhhHHHHHHHhHHHHHHHHHHHHHh-----------CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 022112 77 ---NVDWCESHKVETIRTNVVGTLTLADVCRDK-----------GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFV 142 (302)
Q Consensus 77 ---~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----------~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~ 142 (302)
............+++|..+...+...+... ..++|++||...+.+. +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~------------------~~ 143 (241)
T d1uaya_ 82 LGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ------------------IG 143 (241)
T ss_dssp BCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC------------------TT
T ss_pred cccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC------------------CC
Confidence 111223456678899999888887766432 1258999997654321 23
Q ss_pred CCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCc------hhhHHHHhcccccccccCCcccHhhHHHHHHHHH
Q 022112 143 GSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNP------RNFITKITRYEKVVNIPNSMTILDELLPISIEMA 213 (302)
Q Consensus 143 ~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~ 213 (302)
...|+.+|...+.+.+.++.. ..+|...|.......+ ......+....+ ...-+...+|+|.+++.++
T Consensus 144 ~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~---~~~R~g~pedvA~~v~fL~ 220 (241)
T d1uaya_ 144 QAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVP---FPPRLGRPEEYAALVLHIL 220 (241)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCC---SSCSCCCHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHHHhcCC---CCCCCcCHHHHHHHHHHHH
Confidence 478999999999998776543 4566655544322111 111111211111 1123456899999999988
Q ss_pred hcC--CCCeEEecCCCc
Q 022112 214 KRN--LTGIWNFTNPGV 228 (302)
Q Consensus 214 ~~~--~~~~~~~~~~~~ 228 (302)
+.. .+.++.+.+|-.
T Consensus 221 s~~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 221 ENPMLNGEVVRLDGALR 237 (241)
T ss_dssp HCTTCCSCEEEESTTCC
T ss_pred hCCCCCCCEEEECCccc
Confidence 753 234777777643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=6.2e-12 Score=103.92 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=80.6
Q ss_pred cEE-EEEcCCcchHHHHHHHHHhC-CCcEEE------------------------eecCCCChhhHHHHHhhc-----CC
Q 022112 15 LKF-LIYGRTGWIGGLLGKLCQAQ-SIDFTY------------------------GSGRLENRASLEADIAAV-----KP 63 (302)
Q Consensus 15 ~~i-lItGatG~iG~~l~~~L~~~-g~~V~~------------------------~~~dl~~~~~~~~~~~~~-----~~ 63 (302)
|+| |||||++.||..+++.|+++ |..|++ +.+|++|.+++++++++. ++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~i 82 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGL 82 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 455 99999999999999999985 888877 678999999987766543 79
Q ss_pred CEEEEccccCCC-CCcchhhhhHHHHHHHhHHHHHHHHHHHHHh---CCeEEEEcCCc
Q 022112 64 THVFNAAGVTGR-PNVDWCESHKVETIRTNVVGTLTLADVCRDK---GLILINYATGC 117 (302)
Q Consensus 64 d~Vi~~a~~~~~-~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~---~~~~v~~SS~~ 117 (302)
|++||.||.... +.......+....+++|+.++..+.+.+... +.++|.+||..
T Consensus 83 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~ 140 (275)
T d1wmaa1 83 DVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIM 140 (275)
T ss_dssp EEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHH
T ss_pred EEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 999999997631 1122233466778999999999999988653 33689998864
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.25 E-value=1.1e-10 Score=95.91 Aligned_cols=197 Identities=12% Similarity=-0.013 Sum_probs=118.6
Q ss_pred cccEEEEEcCCc--chHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhc-------
Q 022112 13 KPLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAV------- 61 (302)
Q Consensus 13 ~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~------- 61 (302)
+++++|||||+| .||.++++.|+++|.+|++ +.+|+++.+++..+++..
T Consensus 5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~~~ 84 (268)
T d2h7ma1 5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG 84 (268)
T ss_dssp TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccccC
Confidence 456899999755 5999999999999999987 788899887665554322
Q ss_pred -CCCEEEEccccCCCCC------cchhhhhHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEcCCccccCCCCCCCCCCCC
Q 022112 62 -KPTHVFNAAGVTGRPN------VDWCESHKVETIRTNVVGTLTLADVCRDKGL--ILINYATGCIFEYDSGHPLGSGIG 132 (302)
Q Consensus 62 -~~d~Vi~~a~~~~~~~------~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~~~~~~~~~~ 132 (302)
.+|+++|+|+...... .+.........+..|..........+..... ..++++|.....
T Consensus 85 ~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~------------ 152 (268)
T d2h7ma1 85 NKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR------------ 152 (268)
T ss_dssp CCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS------------
T ss_pred CCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc------------
Confidence 5799999999652000 1112234556667777777666666665422 244444332221
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhcccc-----------------c
Q 022112 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEK-----------------V 192 (302)
Q Consensus 133 ~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~-----------------~ 192 (302)
..|....|+.+|...+.+.+.++.. ..+|+..+-... ....+...+..... .
T Consensus 153 ------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~--v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (268)
T d2h7ma1 153 ------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGP--IRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR 224 (268)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECC--CCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred ------cCcccchhhccccchhhccccchhhhhccCCcceEEecCC--CCChhhhhhccchhhhhhccchHHHHHHHHhc
Confidence 1123468999999999998765432 334443332211 11112211111100 0
Q ss_pred ccccCCcccHhhHHHHHHHHHhcC---CCC-eEEecCCCcc
Q 022112 193 VNIPNSMTILDELLPISIEMAKRN---LTG-IWNFTNPGVV 229 (302)
Q Consensus 193 ~~~~~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~~~ 229 (302)
....+-+...+|+|.++..++... ..| ++.+.+|...
T Consensus 225 ~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 225 APIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHT 265 (268)
T ss_dssp CTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCccc
Confidence 112344667899999999988642 234 6777776543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.24 E-value=2.8e-10 Score=93.67 Aligned_cols=194 Identities=12% Similarity=0.026 Sum_probs=110.6
Q ss_pred cccEEEEEcCCc--chHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhc-----C
Q 022112 13 KPLKFLIYGRTG--WIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAV-----K 62 (302)
Q Consensus 13 ~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~-----~ 62 (302)
+.+++|||||+| .||.++++.|+++|++|++ ...|+++.+++.+.+.+. .
T Consensus 4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~ 83 (274)
T d2pd4a1 4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS 83 (274)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcCC
Confidence 357999999887 7999999999999999998 466777777766655432 7
Q ss_pred CCEEEEccccCCCCCcch-h-hhhHHHHH---HHhHHHHHHHHHHHHHhC--Ce-EEEEcCCccccCCCCCCCCCCCCCC
Q 022112 63 PTHVFNAAGVTGRPNVDW-C-ESHKVETI---RTNVVGTLTLADVCRDKG--LI-LINYATGCIFEYDSGHPLGSGIGFK 134 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~-~-~~~~~~~~---~~n~~~~~~ll~~~~~~~--~~-~v~~SS~~vy~~~~~~~~~~~~~~~ 134 (302)
+|++||+++......... . ........ ..+......+.....+.. .. ++.+|+.......
T Consensus 84 id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------------ 151 (274)
T d2pd4a1 84 LDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------------ 151 (274)
T ss_dssp EEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------------
T ss_pred CCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc------------
Confidence 899999999763111111 1 11222222 222223333434333322 12 4444444433311
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCc---hhhHHHHhcccccccccCCcccHh
Q 022112 135 EEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNP---RNFITKITRYEKVVNIPNSMTILD 203 (302)
Q Consensus 135 e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~ 203 (302)
+....|+.+|...+.+++..+.. ..+.|+.+.-+..... ..+....... ....-+...+
T Consensus 152 ------~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~----~p~~r~~~pe 221 (274)
T d2pd4a1 152 ------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEIN----APLRKNVSLE 221 (274)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHH----STTSSCCCHH
T ss_pred ------ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhh----hhccCCcCHH
Confidence 12368999999999987664332 3344444332211000 1111111111 1123456789
Q ss_pred hHHHHHHHHHhcC---CCC-eEEecCCCc
Q 022112 204 ELLPISIEMAKRN---LTG-IWNFTNPGV 228 (302)
Q Consensus 204 D~a~~~~~~~~~~---~~~-~~~~~~~~~ 228 (302)
|+|.++..++... ..| ++.+.+|..
T Consensus 222 dIA~~v~fL~S~~s~~itG~~i~vDGG~~ 250 (274)
T d2pd4a1 222 EVGNAGMYLLSSLSSGVSGEVHFVDAGYH 250 (274)
T ss_dssp HHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHHhChhhCCCcCceEEECCChh
Confidence 9999999988652 234 888888753
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.21 E-value=9.5e-10 Score=89.91 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=112.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeec--------------------------CCCC----hhhHHHHHh----h-
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG--------------------------RLEN----RASLEADIA----A- 60 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~--------------------------dl~~----~~~~~~~~~----~- 60 (302)
..|||||++.||..+++.|+++|++|++... |..+ .+.+.+.++ +
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999998222 2221 222333222 1
Q ss_pred cCCCEEEEccccCCCCCcc------------hhhhhHHHHHHHhHHHHHHHHHHHHHhC----------CeEEEEcCCcc
Q 022112 61 VKPTHVFNAAGVTGRPNVD------------WCESHKVETIRTNVVGTLTLADVCRDKG----------LILINYATGCI 118 (302)
Q Consensus 61 ~~~d~Vi~~a~~~~~~~~~------------~~~~~~~~~~~~n~~~~~~ll~~~~~~~----------~~~v~~SS~~v 118 (302)
-++|++||+||........ .........+..|..............- ..++.+|+...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (266)
T d1mxha_ 83 GRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 162 (266)
T ss_dssp SCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGG
T ss_pred CCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccc
Confidence 2799999999976311100 0112334555666666555555444321 12444454333
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc--------eEEeeecccCCCCCCchhhHHHHhccc
Q 022112 119 FEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV--------CTLRVRMPISSDLSNPRNFITKITRYE 190 (302)
Q Consensus 119 y~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~--------~~lR~~~v~g~~~~~~~~~~~~~~~~~ 190 (302)
.. +.|....|+.+|...+.+.+.++.. ..+.|+++.-+.. .+..+...+.+..
T Consensus 163 ~~------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~-~~~~~~~~~~~~~ 223 (266)
T d1mxha_ 163 DL------------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPA-MPQETQEEYRRKV 223 (266)
T ss_dssp GS------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSS-SCHHHHHHHHTTC
T ss_pred cc------------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEecccc-CCHHHHHHHHhcC
Confidence 22 1223478999999999988765432 3345555432221 2334444443332
Q ss_pred ccccccCCcccHhhHHHHHHHHHhcC---CCC-eEEecCCCcc
Q 022112 191 KVVNIPNSMTILDELLPISIEMAKRN---LTG-IWNFTNPGVV 229 (302)
Q Consensus 191 ~~~~~~~~~i~v~D~a~~~~~~~~~~---~~~-~~~~~~~~~~ 229 (302)
+ ..+-+...+|+|.+++.++... ..| ++.+.+|-.+
T Consensus 224 p---l~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 224 P---LGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp T---TTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred C---CCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHhh
Confidence 2 2233457899999999988652 244 7888887544
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.20 E-value=7.6e-10 Score=92.08 Aligned_cols=194 Identities=11% Similarity=-0.028 Sum_probs=117.1
Q ss_pred cccEEEEEcCCc--chHHHHHHHHHhCCCcEEEeec------------------------------------C--C----
Q 022112 13 KPLKFLIYGRTG--WIGGLLGKLCQAQSIDFTYGSG------------------------------------R--L---- 48 (302)
Q Consensus 13 ~~~~ilItGatG--~iG~~l~~~L~~~g~~V~~~~~------------------------------------d--l---- 48 (302)
+++++|||||+| -||..+++.|+++|.+|++... | +
T Consensus 7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (297)
T d1d7oa_ 7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPE 86 (297)
T ss_dssp TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSGG
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccccc
Confidence 356899999987 7999999999999999987321 0 0
Q ss_pred --------------CChhhHHHHHh----hc-CCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 022112 49 --------------ENRASLEADIA----AV-KPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK 106 (302)
Q Consensus 49 --------------~~~~~~~~~~~----~~-~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~ 106 (302)
.+...++++++ ++ ++|++||+||... .+..+...+++...+++|+.+...+.+++...
T Consensus 87 ~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~ 166 (297)
T d1d7oa_ 87 DVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPI 166 (297)
T ss_dssp GSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred cchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHHHH
Confidence 11111222222 22 7899999998642 11122345577889999999999999988765
Q ss_pred CC---eEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc---------eEEeeecccCC
Q 022112 107 GL---ILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV---------CTLRVRMPISS 174 (302)
Q Consensus 107 ~~---~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~---------~~lR~~~v~g~ 174 (302)
.. ..+.++++...... .+....|+.+|...+.+.+.+... ..+.|+++.-+
T Consensus 167 ~~~~g~~~~~~~~~~~~~~-----------------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~ 229 (297)
T d1d7oa_ 167 MNPGGASISLTYIASERII-----------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSR 229 (297)
T ss_dssp EEEEEEEEEEECGGGTSCC-----------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCC
T ss_pred hhcCCcceeeeehhhcccc-----------------cccccceecccccccccccccchhccccceEEecccccccccch
Confidence 22 24555554322211 112368999999888776543211 34555555433
Q ss_pred CCCC---chhhHHHHhcccccccccCCcccHhhHHHHHHHHHhcC---CC-CeEEecCCC
Q 022112 175 DLSN---PRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRN---LT-GIWNFTNPG 227 (302)
Q Consensus 175 ~~~~---~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~---~~-~~~~~~~~~ 227 (302)
.... ...+........+ ..-+...+|+|.+++.++... .. .++.+.+|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~P----lgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~ 285 (297)
T d1d7oa_ 230 AAKAIGFIDTMIEYSYNNAP----IQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGL 285 (297)
T ss_dssp CSSCCSHHHHHHHHHHHHSS----SCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred hhhhccCCHHHHHHHHhCCC----CCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcCH
Confidence 2211 1122233322211 123567899999999988642 23 477777763
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.15 E-value=6.6e-10 Score=93.81 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=93.7
Q ss_pred cEEEEEc--CCcchHHHHHHHHHhCCCcEEEee-----------------------------------------------
Q 022112 15 LKFLIYG--RTGWIGGLLGKLCQAQSIDFTYGS----------------------------------------------- 45 (302)
Q Consensus 15 ~~ilItG--atG~iG~~l~~~L~~~g~~V~~~~----------------------------------------------- 45 (302)
+..|||| ++.-||..+++.|+++|.+|++..
T Consensus 3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (329)
T d1uh5a_ 3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTANDI 82 (329)
T ss_dssp CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGGC
T ss_pred cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhccc
Confidence 5799999 556899999999999999987621
Q ss_pred ---------cCCCChhhHHHHHhh-----cCCCEEEEccccCC---CCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh--
Q 022112 46 ---------GRLENRASLEADIAA-----VKPTHVFNAAGVTG---RPNVDWCESHKVETIRTNVVGTLTLADVCRDK-- 106 (302)
Q Consensus 46 ---------~dl~~~~~~~~~~~~-----~~~d~Vi~~a~~~~---~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-- 106 (302)
.|+.+.++++.+++. -++|++||.|+... .+..+...+++...+++|+.+...+++++...
T Consensus 83 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m~ 162 (329)
T d1uh5a_ 83 DEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMK 162 (329)
T ss_dssp CHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred chhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhcc
Confidence 123333333333332 18999999998652 01122345678889999999998888888764
Q ss_pred -CCeEEEEcCCccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhcCc----eEEeeecc
Q 022112 107 -GLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV----CTLRVRMP 171 (302)
Q Consensus 107 -~~~~v~~SS~~vy~~~~~~~~~~~~~~~e~~~~~~~~~~Y~~~K~~~E~~~~~~~~~----~~lR~~~v 171 (302)
+.++|.+||...... .+. ....|+.+|...+.+++.++.. ..+|+..|
T Consensus 163 ~~GsIv~iss~~~~~~----------------~p~-y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI 215 (329)
T d1uh5a_ 163 PQSSIISLTYHASQKV----------------VPG-YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTI 215 (329)
T ss_dssp EEEEEEEEECGGGTSC----------------CTT-CTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred cccccccceeehhccc----------------ccc-cchhhhhhhccccccchhhHHHHhcccCcEEEEE
Confidence 235888887554321 111 1257999999999988775432 35565444
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.04 E-value=5.3e-09 Score=84.89 Aligned_cols=205 Identities=12% Similarity=0.027 Sum_probs=107.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe-------ecCCCChhhHHHHHh----h--cCCCEEEEccccCCCCCcch
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG-------SGRLENRASLEADIA----A--VKPTHVFNAAGVTGRPNVDW 80 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~-------~~dl~~~~~~~~~~~----~--~~~d~Vi~~a~~~~~~~~~~ 80 (302)
|+.||||||++.||++++++|+++|++|++. ..|+.+.+....... + ..+|+++++|+...
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~------ 74 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP------ 74 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT------
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCHHHHHHHHHHHHHHhCCCCcEEEEcCCCCC------
Confidence 5578999999999999999999999999883 345666554443322 1 15899999998652
Q ss_pred hhhhHHHHHHHhHHHHHHHHHHHHH----hCCe-EEEEcCCcc-ccCCCCCCCC----CCCC-----CCCCCCCCCCCCc
Q 022112 81 CESHKVETIRTNVVGTLTLADVCRD----KGLI-LINYATGCI-FEYDSGHPLG----SGIG-----FKEEDTPNFVGSF 145 (302)
Q Consensus 81 ~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~-~v~~SS~~v-y~~~~~~~~~----~~~~-----~~e~~~~~~~~~~ 145 (302)
..........+|..+...+.+.... .... ...+++... +-.....+.. .+.. ........+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~ 154 (257)
T d1fjha_ 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCCCcchHH
Confidence 2233445566777776666655433 2222 344433221 1100000000 0000 0000001111236
Q ss_pred hhhhHHHHHHHHHhhcCc---eEEeeecccCCCCCCchhhHHHHhccccc----cc---ccCCcccHhhHHHHHHHHHhc
Q 022112 146 YSKTKAMVEELLKNFENV---CTLRVRMPISSDLSNPRNFITKITRYEKV----VN---IPNSMTILDELLPISIEMAKR 215 (302)
Q Consensus 146 Y~~~K~~~E~~~~~~~~~---~~lR~~~v~g~~~~~~~~~~~~~~~~~~~----~~---~~~~~i~v~D~a~~~~~~~~~ 215 (302)
|+.+|...+.+.+.++.. ..+|+..+-.... ...+.......... .. ...-+...+|+|.+++.++..
T Consensus 155 Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i--~T~~~~~~~~~~~~~~~~~~~~~PlgR~g~p~eva~~v~fL~S~ 232 (257)
T d1fjha_ 155 YAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGAT--ETPLLQAGLQDPRYGESIAKFVPPMGRRAEPSEMASVIAFLMSP 232 (257)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CCCSTTSCCCTHHHHHHHHHHTSG
T ss_pred HHHHhhhhhccccccccccccccccccccccCCc--CChhHHhhcCCHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCc
Confidence 999999999998876533 3345444322111 11112211111110 00 012245789999999998864
Q ss_pred C---CCC-eEEecCC
Q 022112 216 N---LTG-IWNFTNP 226 (302)
Q Consensus 216 ~---~~~-~~~~~~~ 226 (302)
. ..| ++.+.+|
T Consensus 233 ~s~~itG~~i~vDGG 247 (257)
T d1fjha_ 233 AASYVHGAQIVIDGG 247 (257)
T ss_dssp GGTTCCSCEEEESTT
T ss_pred hhCCccCceEEeCCC
Confidence 2 234 7777776
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.86 E-value=1.1e-09 Score=84.93 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=53.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-----------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-----------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+.+++|||||+|.||+.+++.|+++|.+|++ ..+|+.+.+++++.+. ++|+|||+
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~iDilin~ 99 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK--GAHFVFTA 99 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT--TCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc--CcCeeeec
Confidence 4579999999999999999999999999988 5678889999999998 89999999
Q ss_pred cccC
Q 022112 70 AGVT 73 (302)
Q Consensus 70 a~~~ 73 (302)
|+..
T Consensus 100 Ag~g 103 (191)
T d1luaa1 100 GAIG 103 (191)
T ss_dssp CCTT
T ss_pred Cccc
Confidence 9864
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.23 E-value=4.1e-06 Score=60.89 Aligned_cols=93 Identities=22% Similarity=0.185 Sum_probs=67.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC--cEEEeecC--------CC------------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGR--------LE------------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~d--------l~------------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
||.|+||+|.+|+.++-.|..+|. +++.+..+ +. ...+..+.++ ++|+||.+||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~--~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK--GCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT--TCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhC--CCCEEEECCCcC
Confidence 799999999999999999998885 45443221 10 1223345555 899999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.....+..+.+..|....+.+++.+++++.. ++++.|
T Consensus 80 -----~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 80 -----RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp -----CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred -----CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2334466678899999999999999998655 444444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=7.2e-06 Score=58.77 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=41.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE-------------------eecCCCChhhHHHH-HhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY-------------------GSGRLENRASLEAD-IAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~-------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~ 69 (302)
|+|+|+|+ |.+|+.+++.|.+.|++|++ +.+|.++++.+.++ ++ ++|.++-+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~--~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIE--DADMYIAV 72 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTT--TCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChh--hhhhhccc
Confidence 79999996 99999999999999999988 56667776666655 23 67777754
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=9.4e-06 Score=58.99 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=53.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-Cc---EEEeecC-------------CCChhh-HHHHHhhcCCCEEEEccccCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-ID---FTYGSGR-------------LENRAS-LEADIAAVKPTHVFNAAGVTGR 75 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~---V~~~~~d-------------l~~~~~-~~~~~~~~~~d~Vi~~a~~~~~ 75 (302)
|+||.|+||||++|+.+++.|+++. +. ++..... +...+. -...+. ++|++|.+++..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~--~~DivF~a~~~~-- 76 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALK--ALDIIVTCQGGD-- 76 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHH--TCSEEEECSCHH--
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhh--cCcEEEEecCch--
Confidence 5689999999999999999887753 22 3331111 000000 012344 899999887632
Q ss_pred CCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCccccCC
Q 022112 76 PNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYD 122 (302)
Q Consensus 76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~ 122 (302)
....+...+.+.+.+.++++.++.|-..
T Consensus 77 -------------------~s~~~~~~~~~~g~~~~VID~Ss~fR~~ 104 (146)
T d1t4ba1 77 -------------------YTNEIYPKLRESGWQGYWIDAASSLRMK 104 (146)
T ss_dssp -------------------HHHHHHHHHHHTTCCCEEEECSSTTTTC
T ss_pred -------------------HHHHhhHHHHhcCCCeecccCCcccccC
Confidence 1234666777778776677766666643
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.12 E-value=8.2e-06 Score=59.44 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=61.9
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChh----hHH----------------HHHhhcCCCEEEEc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRA----SLE----------------ADIAAVKPTHVFNA 69 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~----~~~----------------~~~~~~~~d~Vi~~ 69 (302)
.++|||.|+|+ |++|+.++..|+.+| .|++.+..|-.... ++. +.+. ++|+||.+
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~~--~adivvit 79 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK--DADLVVIT 79 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGT--TCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHhc--cccEEEEe
Confidence 34679999995 999999999999988 57777543311000 011 1112 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
|+.. .....+..+....|+...+.+++.+++.+.+ ++.+.|
T Consensus 80 ag~~-----~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 80 AGAP-----QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccc-----cCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 9865 2334566778889999999999999998765 554444
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.12 E-value=2.4e-05 Score=56.78 Aligned_cols=96 Identities=17% Similarity=0.110 Sum_probs=66.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCC--CChh----hHHHHHhh------------------cCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRL--ENRA----SLEADIAA------------------VKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl--~~~~----~~~~~~~~------------------~~~d~Vi~ 68 (302)
|||.|+||+|.+|+.++..|+.+| .++..+..+- ...+ ++.+.... .++|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 799999999999999999999998 4776654431 1111 12221100 16899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
+||.. .....+..+.+..|....+.+.+...+.+-+.|++-|
T Consensus 81 tAG~~-----~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVt 122 (145)
T d1hyea1 81 TSGVP-----RKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT 122 (145)
T ss_dssp CCSCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred ecccc-----cCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEc
Confidence 99965 2334467788899999999999999888644444433
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.01 E-value=1e-05 Score=59.66 Aligned_cols=88 Identities=9% Similarity=0.031 Sum_probs=61.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC----c-EEEeecCCC-C------------------------hhhHHHHHhhcC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI----D-FTYGSGRLE-N------------------------RASLEADIAAVK 62 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~----~-V~~~~~dl~-~------------------------~~~~~~~~~~~~ 62 (302)
..|||.|+||+|++|++++-.|...+. . +.....|.. + .....+.++ +
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--D 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcc--c
Confidence 457999999999999999999988753 1 211111110 0 011234444 8
Q ss_pred CCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 63 PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 63 ~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
.|+||-+||.. .....+..+.+..|....+.+.+.+.+..
T Consensus 81 advViitaG~~-----~~pg~~r~dl~~~N~~i~~~~~~~i~k~a 120 (154)
T d1y7ta1 81 ADYALLVGAAP-----RKAGMERRDLLQVNGKIFTEQGRALAEVA 120 (154)
T ss_dssp CSEEEECCCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccEEEeecCcC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999966 23455677888999999999999998863
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=2e-05 Score=57.14 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=63.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHh-CC--CcEEEeecCCCChh-h----H-----------------HHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQA-QS--IDFTYGSGRLENRA-S----L-----------------EADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~-~g--~~V~~~~~dl~~~~-~----~-----------------~~~~~~~~~d~Vi~~ 69 (302)
|||.|+|++|.+|+.++-.|.. .+ .++..+.. .+.. . + .+.+. +.|+||-+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~--~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~--~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI--APVTPGVAVDLSHIPTAVKIKGFSGEDATPALE--GADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS--STTHHHHHHHHHTSCSSCEEEEECSSCCHHHHT--TCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc--cccchhHHHHHHCCccccCCcEEEcCCCccccC--CCCEEEEC
Confidence 7999999999999999987754 33 66666432 2211 0 1 12233 78999999
Q ss_pred cccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEE
Q 022112 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINY 113 (302)
Q Consensus 70 a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~ 113 (302)
||... ....+..+.+..|....+.+.+.+.+.+-+ ++.+
T Consensus 77 aG~~~-----k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aiviv 116 (145)
T d2cmda1 77 AGVRR-----KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGI 116 (145)
T ss_dssp CSCCC-----CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCccC-----CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 99652 334466677889999999999999988644 3433
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=1.3e-05 Score=56.91 Aligned_cols=73 Identities=16% Similarity=0.283 Sum_probs=54.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVV 94 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~ 94 (302)
|||.|.|++|-+|+.|++.+.++|+++.+.. |....+ .+. ++|+||.+..+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~i-d~~~~~----~~~--~~DVvIDFS~p~--------------------- 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKV-DVNGVE----ELD--SPDVVIDFSSPE--------------------- 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-ETTEEE----ECS--CCSEEEECSCGG---------------------
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEE-CCCcHH----Hhc--cCCEEEEecCHH---------------------
Confidence 7999999999999999999999999987632 211111 123 789999986643
Q ss_pred HHHHHHHHHHHhCCeEEEEcC
Q 022112 95 GTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 95 ~~~~ll~~~~~~~~~~v~~SS 115 (302)
++...++.|.+.++++|.=+|
T Consensus 53 ~~~~~l~~~~~~~~p~ViGTT 73 (128)
T d1vm6a3 53 ALPKTVDLCKKYRAGLVLGTT 73 (128)
T ss_dssp GHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHhcCCCEEEEcC
Confidence 234578899999988776555
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.90 E-value=4e-05 Score=56.24 Aligned_cols=100 Identities=22% Similarity=0.214 Sum_probs=66.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh-----------------------hhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR-----------------------ASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~-----------------------~~~~~~~~~~~~d~Vi~ 68 (302)
+++||.|+|+ |.+|+.++..|...+. +++.+..+-... ...++.+. +.|+|+-
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~adiVvi 82 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT--GADCVIV 82 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT--TCSEEEE
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc--CCCeEEE
Confidence 4569999997 9999999988888875 555533221100 11223344 7899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
+|+....|+......+..+....|....+.+++.+++.+-+ ++.+.|
T Consensus 83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99876422211222355667788999999999999998765 444444
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.88 E-value=0.00011 Score=52.98 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=64.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhhHH----------------------HHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRASLE----------------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~~~----------------------~~~~~~~~d~Vi~~a 70 (302)
|||.|+|| |.+|+.++..|+.+| .++..+..|-...+... +.+. ++|+|+-+|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~--dadvvvita 77 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTA--NSDIVIITA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT--TCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhc--CCeEEEEEE
Confidence 79999996 999999999999987 46666433311111110 1122 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
|... ....+..+....|....+.+++.+++.+-+ ++.+-|
T Consensus 78 g~~~-----~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 78 GLPR-----KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp SCCC-----CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred ecCC-----CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 9652 333456678889999999999999987644 444433
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=7.8e-06 Score=62.61 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=37.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA 59 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~ 59 (302)
|||.|+||+|.+|+.|++.|+++||+|++..+|-...+++.+.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 799999999999999999999999999998887544444444444
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.79 E-value=6.5e-05 Score=56.21 Aligned_cols=87 Identities=7% Similarity=-0.111 Sum_probs=62.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-----CcEEEeecCCCChh-------------------------hHHHHHhhcCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-----IDFTYGSGRLENRA-------------------------SLEADIAAVKP 63 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-----~~V~~~~~dl~~~~-------------------------~~~~~~~~~~~ 63 (302)
..||.|+||+|.||.+++-.|++.. ..+.....|+.... ...+.+. +.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~--~a 101 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFE--DV 101 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--TC
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhcc--CC
Confidence 3489999999999999999998743 23444333332211 1223344 78
Q ss_pred CEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhC
Q 022112 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107 (302)
Q Consensus 64 d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 107 (302)
|+||-+++.. .....+..+.+..|....+.+.+++.+..
T Consensus 102 DvVvi~ag~~-----rkpg~tR~Dll~~N~~I~k~~~~~i~~~a 140 (175)
T d7mdha1 102 DWALLIGAKP-----RGPGMERAALLDINGQIFADQGKALNAVA 140 (175)
T ss_dssp SEEEECCCCC-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEeeccC-----CCCCCcHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999865 34556778889999999999999999863
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.74 E-value=5.5e-05 Score=55.35 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=44.7
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
++++||.|+||.|.+|+.+++.|.+.||+|.++..+ ........+. ..|.++.+..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~--~~~~~~~~~~--~~~~v~~~~~ 62 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE--DWAVAESILA--NADVVIVSVP 62 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT--CGGGHHHHHT--TCSEEEECSC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc--cccccchhhh--hccccccccc
Confidence 356799999999999999999999999999887554 3444455556 7888887655
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.69 E-value=0.00022 Score=52.27 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=65.4
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh------HHH-----------------HHhhcCCC
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS------LEA-----------------DIAAVKPT 64 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~------~~~-----------------~~~~~~~d 64 (302)
...+..||-|+|+ |.+|+.++-.|..+|. |+..+..+ .... +.+ .+. ++|
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~--~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~--~ad 90 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVL--EDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA--NSK 90 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC--HHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT--TCS
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEec--cchhHHHHHHHhccccccCCCeEEeccchhhcc--ccc
Confidence 3334569999995 9999999999999986 56554332 1111 111 111 789
Q ss_pred EEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
+|+.+|+... ....+..+....|....+.+....++.+-+ ++.+-|
T Consensus 91 iVVitAg~~~-----~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 91 IVVVTAGVRQ-----QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp EEEECCSCCC-----CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEEecCCcc-----ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999999662 233455677788999999999999998655 444333
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.68 E-value=8.5e-05 Score=54.47 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCC-----CcEEEeecCCCChhh-------------------------HHHHHhhc
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQS-----IDFTYGSGRLENRAS-------------------------LEADIAAV 61 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g-----~~V~~~~~dl~~~~~-------------------------~~~~~~~~ 61 (302)
|..|||.|+||+|.+|++++-.|...+ .++..+..|...... ..+.+.
T Consensus 1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (154)
T d5mdha1 1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFK-- 78 (154)
T ss_dssp CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTT--
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccC--
Confidence 346799999999999999999988653 234444444332111 123333
Q ss_pred CCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHh
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK 106 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~ 106 (302)
+.|+||-+++... ....+..+.+..|..-.+.+.+...+.
T Consensus 79 ~~dvVVitag~~~-----~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 79 DLDVAILVGSMPR-----RDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp TCSEEEECCSCCC-----CTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCC-----CCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 7899999999652 333445566788999889999888775
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.67 E-value=4.9e-05 Score=54.99 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS 38 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g 38 (302)
|||.|+||||++|+.|++.|+++.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~ 24 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEER 24 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTT
T ss_pred CEEEEECCccHHHHHHHHHHHhcC
Confidence 799999999999999999888643
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.66 E-value=0.00013 Score=52.94 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=62.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHH-----------------HHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEA-----------------DIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~-----------------~~~~~~~d~Vi~~a~ 71 (302)
.||.|+|| |++|+.++..|+.+|. |+..+..+-.... ++.+ .+. ++|+||.+|+
T Consensus 7 ~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~--daDvvvitag 83 (148)
T d1ldna1 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR--DADLVVICAG 83 (148)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT--TCSEEEECCS
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhc--cceeEEEecc
Confidence 48999996 9999999999999875 5655332210000 1111 122 7899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
... .......+.+..|....+.+.+.+++++-+ ++.+-|
T Consensus 84 ~~~-----~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 84 ANQ-----KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCC-----CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccc-----ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 652 334455667788999999999999988654 444333
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=0.0001 Score=50.59 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=47.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE----------------eecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------GSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~----------------~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
...||.|+| +|++|+-++....+.|+++++ +.+|+.|.+.+.+.....++|+|-.
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~ 80 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVP 80 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence 345899999 799999999999999999988 5677888998888887668898854
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.65 E-value=3.2e-05 Score=58.34 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=26.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~~ 44 (302)
||||.|.|||||+|..|++.|.++. .++..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 7899999999999999999999984 455554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.64 E-value=0.00038 Score=49.95 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=62.4
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh------hHHHHHh--------------hcCCCEEEEccccC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA------SLEADIA--------------AVKPTHVFNAAGVT 73 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~------~~~~~~~--------------~~~~d~Vi~~a~~~ 73 (302)
||.|+||+|.+|+.++-.|..++. ++..+..+-.... ++.+.+. -.++|+|+-+|+..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~~ 81 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIP 81 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEecccc
Confidence 799999999999999999999985 4544332211110 1111110 01789999999965
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 109 (302)
.....+..+.+..|....+.+.+..++.+-+
T Consensus 82 -----~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~ 112 (142)
T d1o6za1 82 -----RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDD 112 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred -----cccCCchhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 2334567788999999999999999988654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.64 E-value=0.00037 Score=50.07 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCC--CChhh--H----------------HHHHhhcCCCEEEEcccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRL--ENRAS--L----------------EADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl--~~~~~--~----------------~~~~~~~~~d~Vi~~a~~ 72 (302)
.||.|+|+ |.+|+.++-.|+.++. |+..+..+- ..-.. + .+.+. ++|+|+-+|+.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~--~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK--DCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT--TCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhC--CCceEEEeccc
Confidence 48999996 9999999999999875 666643221 11111 0 01122 78999999986
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
. .....+.......|....+.+++.+++++-+ ++.+-|
T Consensus 79 ~-----~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 79 N-----RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred c-----cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 5 2334567788899999999999999998654 444334
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.59 E-value=0.00034 Score=50.15 Aligned_cols=91 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChhh------HH----------------HHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRAS------LE----------------ADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~~------~~----------------~~~~~~~~d~Vi~~a 70 (302)
|||.|+|+ |.+|+.++..|+.++. |+..+ |+.+... +. +.+. ++|+|+-+|
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~--Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~--~adivvita 75 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLI--DVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLK--GSDVVIVAA 75 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEE--CSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEE--ecccccccchhccccccccccccccccCCcHHHhc--CCCEEEEec
Confidence 79999996 9999999998888874 55553 3221110 11 1122 789999999
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
+... .......+.+..|....+.+++..++.+-. ++++-|
T Consensus 76 g~~~-----~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 76 GVPQ-----KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CCCC-----CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cccc-----CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9752 233455677888999999999999988644 444444
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.58 E-value=0.00033 Score=49.77 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=44.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHH-HhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEAD-IAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~-~~~~~~d~Vi~~a~ 71 (302)
++++|.| .|.+|+.+++.|.++|++|++ +.+|.++++.+.++ +. ++|.||-+..
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~--~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIR--NFEYVIVAIG 73 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG--GCSEEEECCC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCc--cccEEEEEcC
Confidence 3688998 599999999999999999988 67888888887766 45 7888875544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.57 E-value=0.00012 Score=54.81 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++|+|+|| |++|+.+++.|.++||+|+++..+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECC
Confidence 358999986 999999999999999999984443
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.55 E-value=5.8e-05 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI 39 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~ 39 (302)
.|||.|.||||++|..|++.|.+++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~h 27 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDF 27 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC
Confidence 47999999999999999999986654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.49 E-value=0.00056 Score=49.11 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=63.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh----hHHH-----------------HHhhcCCCEEEEcccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA----SLEA-----------------DIAAVKPTHVFNAAGV 72 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~----~~~~-----------------~~~~~~~d~Vi~~a~~ 72 (302)
||.|+|+ |.+|+.++-.|..+|. |+..+..+-.... ++.+ .+. ++|+||-+||.
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~--daDvVVitaG~ 79 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICR--DADMVVITAGP 79 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGT--TCSEEEECCCC
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhh--CCcEEEEeccc
Confidence 7999996 9999999999999885 5655332210000 0111 112 78999999996
Q ss_pred CCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
. .....+..+.+..|....+.+.+.+++.+-+ ++.+-|
T Consensus 80 ~-----~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 R-----QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp C-----CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred c-----cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 5 2344566678899999999999999998654 444434
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.00027 Score=50.19 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred EEEEEcCCcchHHHHHHHHHh-CCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHH
Q 022112 16 KFLIYGRTGWIGGLLGKLCQA-QSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVV 94 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~-~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~ 94 (302)
||.|.|++|-+|+.+++.+.+ .++++.+.. |..+... .+...++|+||.+..+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~-d~~~~~~---~~~~~~~DvvIDFS~p~--------------------- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAEL-DAGDPLS---LLTDGNTEVVIDFTHPD--------------------- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEE-CTTCCTH---HHHTTTCSEEEECCCTT---------------------
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEE-ecCCchh---hhccccCCEEEEcccHH---------------------
Confidence 799999999999999998776 456666532 3322221 22334899999997654
Q ss_pred HHHHHHHHHHHhCCeEEEEcC
Q 022112 95 GTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 95 ~~~~ll~~~~~~~~~~v~~SS 115 (302)
.+...++.|.+.++++|.=+|
T Consensus 56 ~~~~~~~~~~~~~~~~ViGTT 76 (135)
T d1yl7a1 56 VVMGNLEFLIDNGIHAVVGTT 76 (135)
T ss_dssp THHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHhcCCCEEEecc
Confidence 123578889999988776554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.47 E-value=0.00055 Score=49.12 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=63.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh------hHHH------------------HHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA------SLEA------------------DIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~------~~~~------------------~~~~~~~d~Vi~ 68 (302)
|||.|+|+ |.+|+.++-.|+.+|. |+..+ |+.+.. ++.+ .+. +.|+|+-
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~--Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~--~adiVvi 75 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALV--DIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK--GSEIIVV 75 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEE--CSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGT--TCSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEE--ecccchhhHHHHHHhhhccccCCCCccccCCCHHHhc--cccEEEE
Confidence 79999996 9999999999998873 55553 322111 0111 112 7899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.|+... ....+..+....|......+.+.+++.+-+ ++++-|
T Consensus 76 tag~~~-----~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 76 TAGLAR-----KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp CCCCCC-----CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred eccccC-----CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 998652 333466778889999999999999987644 444444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.44 E-value=0.0009 Score=48.43 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=62.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCC--hhh----HH------------------HHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLEN--RAS----LE------------------ADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~--~~~----~~------------------~~~~~~~~d~Vi~ 68 (302)
.+||-|+|+ |.+|+.++..|..++. ++.. .|+.. .+. +. +.+. +.|+|+-
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L--~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~--~advvvi 77 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVL--FDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLA--GADVVIV 77 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEE--ECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGT--TCSEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEE--EeccCCcceeeecchhhhccccCCCcEEEecccccccC--CCcEEEE
Confidence 358999995 9999999988887774 3333 33322 111 11 1111 7899999
Q ss_pred ccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
+|+....++......+.......|....+.+.+.+++.+-+ ++++-|
T Consensus 78 tag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 78 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99966322111122345667888999999999999998654 444444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.43 E-value=0.00065 Score=48.77 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=57.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhh----HH------------------HHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRAS----LE------------------ADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~----~~------------------~~~~~~~~d~Vi~~a~ 71 (302)
+||.|+|+ |.+|+.++-.|..++. ++..+..+-..... +. +.+. +.|+||-+|+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~--~advvvitag 78 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTA--NSDVIVVTSG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGT--TCSEEEECCS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhc--CCCEEEEeee
Confidence 58999995 9999999999888875 55443222111111 10 0111 7899999999
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.. .....+..+.+..|....+.+++...+.+-+ ++.+.|
T Consensus 79 ~~-----~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 79 AP-----RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp CC--------------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred cc-----CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 65 2334455677788999999999999987654 444444
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.40 E-value=0.00031 Score=53.83 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=29.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+| .||+|..++..|+++||+|+++..|
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 7999997 8999999999999999999996654
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=7.8e-05 Score=55.03 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=53.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhC-CCcEEEee---------cCCCC-----------hhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGS---------GRLEN-----------RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~---------~dl~~-----------~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..|||.|.|++|-+|+.+++.+.+. +.++++.. -|+.+ ..++...++ .+|+||.+.-
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~--~~DViIDFs~ 80 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFTR 80 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhc--ccceEEEecc
Confidence 3579999999999999999988875 55555411 11100 112233444 7899998844
Q ss_pred cCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 72 VTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
+ .++...++.|.+.++++|.=+|
T Consensus 81 p---------------------~~~~~~~~~a~~~~~~~ViGTT 103 (162)
T d1diha1 81 P---------------------EGTLNHLAFCRQHGKGMVIGTT 103 (162)
T ss_dssp H---------------------HHHHHHHHHHHHTTCEEEECCC
T ss_pred H---------------------HHHHHHHHHHHhccceeEEecC
Confidence 2 1234578899999988877655
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00049 Score=53.43 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=45.8
Q ss_pred cccEEEEEcC----------------CcchHHHHHHHHHhCCCcEEEeecCCC-------------ChhhHHHHHhh--c
Q 022112 13 KPLKFLIYGR----------------TGWIGGLLGKLCQAQSIDFTYGSGRLE-------------NRASLEADIAA--V 61 (302)
Q Consensus 13 ~~~~ilItGa----------------tG~iG~~l~~~L~~~g~~V~~~~~dl~-------------~~~~~~~~~~~--~ 61 (302)
.+|+||||+| ||..|.+|++++..+|++|+.+.+... ..+++...+.+ .
T Consensus 5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~~~ 84 (223)
T d1u7za_ 5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQ 84 (223)
T ss_dssp TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGG
T ss_pred CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhhhc
Confidence 3568888865 799999999999999999999776533 23333333321 1
Q ss_pred CCCEEEEccccC
Q 022112 62 KPTHVFNAAGVT 73 (302)
Q Consensus 62 ~~d~Vi~~a~~~ 73 (302)
+.|++|++|+..
T Consensus 85 ~~D~~i~aAAvs 96 (223)
T d1u7za_ 85 QQNIFIGCAAVA 96 (223)
T ss_dssp GCSEEEECCBCC
T ss_pred cceeEeeeechh
Confidence 789999999987
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.16 E-value=0.00029 Score=52.50 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=25.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~ 43 (302)
||||.|+||||++|..|++.|.++.+ ++..
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~ 31 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITY 31 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEE
Confidence 67999999999999999999998753 4444
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.0031 Score=46.13 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=29.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|+||.++| .|.+|+.+++.|+++||+|.+...+
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECc
Confidence 57899998 8999999999999999999985443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.07 E-value=0.00077 Score=49.65 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=28.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+| .|.+|+.+++.|.+.||+|+++..+
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7999998 6999999999999999999986554
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00051 Score=43.49 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=35.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhH
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASL 54 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~ 54 (302)
+.++|||+||+|-+|...++.+...|.+|+++.+.-.+.+.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 456899999999999999999999999999988865554444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.99 E-value=0.0018 Score=46.58 Aligned_cols=99 Identities=13% Similarity=0.175 Sum_probs=59.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCCh----hhHHHHHhh---------------cCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENR----ASLEADIAA---------------VKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~----~~~~~~~~~---------------~~~d~Vi~~a~~~ 73 (302)
+||.|+| .|++|+.++-.|+.+|. ++..+..+-... .++.+.... .++|+||-+||..
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 5899999 59999999999998873 566543321100 012221110 1689999999864
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
... ......+..+....|....+.+.+..++.+-. ++.+-|
T Consensus 81 ~~~-~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 81 KLQ-QDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp GGT-C-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccc-cccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 100 00111233456778999999999999987654 444444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.00032 Score=51.73 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=28.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||+|+|+ |.+|+.++..|.+.||+|+++..+
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~ 32 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRV 32 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcC
Confidence 89999996 999999999999999999995444
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.96 E-value=0.0051 Score=44.83 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=28.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||-|+| .|.+|+.+++.|+++||+|++...+
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~ 32 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRN 32 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899998 7999999999999999999885443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.95 E-value=0.00072 Score=49.41 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=58.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC--cEEEeecCCCChh------hHHHHHh---------------hcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI--DFTYGSGRLENRA------SLEADIA---------------AVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~~dl~~~~------~~~~~~~---------------~~~~d~Vi~~a 70 (302)
..||.|+|+ |.+|+.++..|..+|. ++..+ |..... ++.+... -.+.|+||-+|
T Consensus 19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~--D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 19 RCKITVVGV-GDVGMACAISILLKGLADELALV--DADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEE--CSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEE--eCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 348999995 9999999999999885 56554 322111 1111100 01678999998
Q ss_pred ccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCe
Q 022112 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~ 109 (302)
+... ....+..+.+..|....+.+....++.+-+
T Consensus 96 g~~~-----~~~~~R~dll~~N~~i~~~i~~~i~~~~p~ 129 (159)
T d2ldxa1 96 GARM-----VSGQTRLDLLQRNVAIMKAIVPGVIQNSPD 129 (159)
T ss_dssp SCCC-----CTTTCSSCTTHHHHHHHHHHTTTHHHHSTT
T ss_pred cccc-----CCCCCHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 8652 233444566788999888898888887654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.91 E-value=0.00056 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI 39 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~ 39 (302)
-||.|+|||||+|..|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 3799999999999999999988865
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.80 E-value=0.0038 Score=45.08 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=39.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh-----------hHHHHHhhcCCCEEEEccc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA-----------SLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~-----------~~~~~~~~~~~d~Vi~~a~ 71 (302)
|||-|+| .|.+|+.+++.|+++|++|++...+-.... +..++++ ++|.||-+..
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~diIi~~v~ 65 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVY--SCPVVISAVT 65 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHH--TSSEEEECSC
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHh--hcCeEEEEec
Confidence 7999997 799999999999999999977543322211 1234445 7899997754
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.80 E-value=0.00053 Score=51.56 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=26.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~ 43 (302)
+++||.|+||||++|..|++.|.++.+ ++..
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~ 35 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKV 35 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEE
Confidence 456999999999999999999999863 4444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.80 E-value=0.006 Score=44.81 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL 48 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl 48 (302)
|++|+|+| .|.+|..|++.|.+.|+.+.++-.|.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~ 34 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDI 34 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 45799998 79999999999999997544433343
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.71 E-value=0.0014 Score=47.94 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=44.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC--------------CCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR--------------LENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d--------------l~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|||+|+ |-+|..+++.|..+|. ++++..+. ....+++.+.+. ++|+||.+.+..
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~--~~Divi~atss~ 95 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA--RSDVVVSATAAP 95 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHH--TCSEEEECCSSS
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhc--cCCEEEEecCCC
Confidence 4568999996 9999999999999997 46663332 234456666777 899999997754
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=96.64 E-value=0.0019 Score=48.30 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=29.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
+..+|||+||+|-+|...++.....|.+|+++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~ 61 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 61 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeC
Confidence 456899999999999999999999999999843
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.0092 Score=42.75 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=46.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC--CcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
|++|.|.|+||-||.....-+.++. ++|.++.+ -.+.+.+.+...+++|..|+-.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa-~~N~~~L~~q~~~f~pk~v~i~ 57 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA-GKNVTRMVEQCLEFSPRYAVMD 57 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE-SSCHHHHHHHHHHHCCSEEEES
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe-cCcHHHHHHHHHHHhhcccccc
Confidence 5689999999999999999888864 67887776 4567888888888999988744
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.42 E-value=0.0011 Score=50.14 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.|+||.|+| +|..|.+++..|.++||+|++...|
T Consensus 6 ~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 6 YLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp CEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred eeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEec
Confidence 345899999 7999999999999999999995544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.0028 Score=46.91 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=28.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..+|||+||+|-+|...++.+...|.+|++..
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~ 60 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTA 60 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeccccccccccccccccCccccccc
Confidence 45899999999999999999999999988844
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.38 E-value=0.0033 Score=45.45 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=39.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh------------hHHHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA------------SLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~------------~~~~~~~~~~~d~Vi~~a 70 (302)
|||.++| +|-+|+.|++.|.+.|+++++...+....+ +..++++ ++|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~--~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLID--QVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHH--TCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhh--ccceeeeec
Confidence 7999998 899999999999999999988655422212 2234444 789888664
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0024 Score=47.24 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=29.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
+..+|||+||+|-+|...++.+...|.+|+++..
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~ 60 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS 60 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccc
Confidence 3458999999999999999999999999888443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.013 Score=38.20 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=49.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh--hh------------HHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR--AS------------LEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~--~~------------~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
++||+|+|. |-.|..+++.|.++|++|++........ +. -...+. ++|.||-.-|..
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vi~SPGi~------ 75 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLM--AADLIVASPGIA------ 75 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHH--HCSEEEECTTSC------
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhc--cCCEEEECCCCC------
Confidence 468999996 7799999999999999999854432211 00 022334 678888766644
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEE
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLILI 111 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v 111 (302)
..+ .+++.|++.++++|
T Consensus 76 --~~~-------------~~~~~a~~~gi~ii 92 (93)
T d2jfga1 76 --LAH-------------PSLSAAADAGIEIV 92 (93)
T ss_dssp --TTS-------------HHHHHHHHTTCEEE
T ss_pred --CCC-------------HHHHHHHHcCCCeE
Confidence 111 27778888887754
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=96.30 E-value=0.0047 Score=44.34 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC--CCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ--SIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+++|.|.|+||-||....+-+.++ .++|.++.+. .+.+.+.+.+.+++|..|+-.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~-~N~~~L~~q~~ef~Pk~v~i~ 58 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN-RNVKDLADAAKRTNAKRAVIA 58 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES-SCHHHHHHHHHHTTCSEEEES
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC-CCHHHHHHHHHhhccccceec
Confidence 468999999999999999999876 4778888775 578888889999999988744
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.0047 Score=45.37 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=38.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
..|||+||+|-+|...++.....|.+|++..++-.+.+.+.+ ...|.+++
T Consensus 25 ~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGad~vi~ 74 (167)
T d1tt7a2 25 GSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGASEVIS 74 (167)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCSEEEE
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hcccceEe
Confidence 469999999999999999999999999998776555444332 24455543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.26 E-value=0.01 Score=43.69 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=24.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
|++||.|-| -|-||+.+++.|.+++ .++++
T Consensus 1 M~irIaING-fGRIGR~v~Ral~~~~dieiVa 31 (172)
T d2czca2 1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIG 31 (172)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEE
T ss_pred CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEE
Confidence 567999999 7999999999998765 55555
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.26 E-value=0.0028 Score=47.27 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=28.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|||.|+| +|..|..|+..|.++|++|.+...
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEe
Confidence 7999999 699999999999999999998543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.21 E-value=0.014 Score=43.46 Aligned_cols=33 Identities=12% Similarity=0.156 Sum_probs=29.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+||.|+|| |.+|+.++..++..|++|+++..|
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~ 36 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDIN 36 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999995 999999999999999999986554
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.012 Score=40.18 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=44.7
Q ss_pred cccEEEEEcCCc----------chHHHHHHHHHhCCCcEEEeecC-----------------CCChhhHHHHHhhcCCCE
Q 022112 13 KPLKFLIYGRTG----------WIGGLLGKLCQAQSIDFTYGSGR-----------------LENRASLEADIAAVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG----------~iG~~l~~~L~~~g~~V~~~~~d-----------------l~~~~~~~~~~~~~~~d~ 65 (302)
..+||||+|+.. |-+.+.++.|.+.|++++.+..+ -...+.+.++++..+||.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~d~aD~lYfeplt~e~v~~Ii~~E~p~~ 82 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKG 82 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcChhhcCceEEccCCHHHHHHHHHHhCCCE
Confidence 346899999643 67889999999999999983332 224577888888889999
Q ss_pred EEEccc
Q 022112 66 VFNAAG 71 (302)
Q Consensus 66 Vi~~a~ 71 (302)
|+-..|
T Consensus 83 ii~~~G 88 (121)
T d1a9xa4 83 VIVQYG 88 (121)
T ss_dssp EECSSS
T ss_pred EEeehh
Confidence 985433
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.048 Score=35.07 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=38.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhc--------------CCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAV--------------KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~--------------~~d~Vi~~a~~~ 73 (302)
.|||.++|-.|-==+.||+.|.++|+.|.+.. +.+.+... .+++. ++|.||...+..
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD--~~~~~~t~-~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSN--IEETERTA-YLRKLGIPIFVPHSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEC--SSCCHHHH-HHHHTTCCEESSCCTTSCCCCSEEEECTTCC
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEe--CCCChhHH-HHHHCCCeEEeeecccccCCCCEEEEecCcC
Confidence 37999998766444589999999999998864 33333333 23322 578888877754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.06 E-value=0.0034 Score=46.73 Aligned_cols=31 Identities=16% Similarity=0.081 Sum_probs=28.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
..+|||+||+|.+|...++.+...|.+|++.
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~ 56 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKMIGARIYTT 56 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEECCCCCcccccchhhccccccceee
Confidence 4589999999999999999999999998883
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.05 E-value=0.0046 Score=45.89 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=28.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+| +|.+|..++..|.++||+|+++..+
T Consensus 2 k~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECC
Confidence 6899999 5999999999999999999985554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.02 E-value=0.046 Score=35.72 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=39.0
Q ss_pred CcccEEEEEcCCcchH-HHHHHHHHhCCCcEEEeecCCCChhhHHHHHhh-------------cCCCEEEEccccC
Q 022112 12 SKPLKFLIYGRTGWIG-GLLGKLCQAQSIDFTYGSGRLENRASLEADIAA-------------VKPTHVFNAAGVT 73 (302)
Q Consensus 12 ~~~~~ilItGatG~iG-~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~-------------~~~d~Vi~~a~~~ 73 (302)
...++|.++|..| +| +.||+.|.++|++|.+.... ..+..+...+. .++|.||...|..
T Consensus 6 ~~~~~ihfiGigG-~GMs~LA~~L~~~G~~VsGSD~~--~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 6 RRVQQIHFIGIGG-AGMSGIAEILLNEGYQISGSDIA--DGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp TTCCEEEEETTTS-TTHHHHHHHHHHHTCEEEEEESC--CSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSC
T ss_pred hhCCEEEEEEECH-HHHHHHHHHHHhCCCEEEEEeCC--CChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcC
Confidence 3456899998655 55 78899999999999996433 22222222221 1668888776654
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.86 E-value=0.0098 Score=43.99 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
..+|||+||+|-+|...++.+...|.+|++..++
T Consensus 32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s 65 (176)
T d1xa0a2 32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK 65 (176)
T ss_dssp GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEEeccchHHHHHHHHHHHcCCceEEecCc
Confidence 4579999999999999999999999999995554
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0069 Score=44.81 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=28.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
..+|||+||+|.+|..+++.+...|.+|++.
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~ 59 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKALGAKLIGT 59 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEEccccccchHHHHHHHHhCCeEeec
Confidence 4589999999999999999999999999883
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.71 E-value=0.01 Score=43.50 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=44.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCChhhHHHHHh--------hcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENRASLEADIA--------AVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~~~~~~~~~--------~~~~d~Vi~~a~~~ 73 (302)
+.++|||+| +|..|+.++..|.+.|. ++.++.++....+.+.+.+. ..++|.||++....
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliINaTpiG 84 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILVNVTSIG 84 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTT
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhheeccccC
Confidence 346899999 58899999999999996 67777776554455544433 23779999986644
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.0071 Score=44.83 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
.+|||+||+|-+|...++.+...|.+|+++.+.-.+.+ .+++.+.|.||+-
T Consensus 33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~----~~~~lGad~vi~~ 83 (177)
T d1o89a2 33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE----YLKSLGASRVLPR 83 (177)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHH----HHHHHTEEEEEEG
T ss_pred CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHH----HHHhhcccccccc
Confidence 37999999999999999999999999998776543332 2333466666654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0094 Score=43.78 Aligned_cols=60 Identities=15% Similarity=0.059 Sum_probs=45.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhh--------------cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA--------------VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~--------------~~~d~Vi~~a~~~ 73 (302)
+.++|||.|+ |..++.++..|.+.|.+++++.++....+.+.+.+.+ .++|.||++....
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 17 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG 90 (170)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred CCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence 4569999995 7789999999999999888877765555555544431 2679999987654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.015 Score=40.07 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=40.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC-----CCChh---hHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR-----LENRA---SLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d-----l~~~~---~~~~~~~~~~~d~Vi~~ 69 (302)
..++++|+| +|++|..++..|.+.|.+|+++... ..|++ .+.+.+++.++++..++
T Consensus 22 ~p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~ 85 (122)
T d1v59a2 22 IPKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLST 85 (122)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSE
T ss_pred CCCeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCC
Confidence 346899999 7999999999999999999985432 22333 34555665566655543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.68 E-value=0.0037 Score=46.41 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=29.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.|||-|+| .|.+|..+++.|+++||+|.+...+
T Consensus 1 ~MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~ 33 (178)
T d1pgja2 1 SMDVGVVG-LGVMGANLALNIAEKGFKVAVFNRT 33 (178)
T ss_dssp CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECC
Confidence 37899998 8999999999999999999886554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.0059 Score=45.93 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+||.|+|| |.+|+.++..++..|++|+++..|
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~ 36 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQT 36 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECC
Confidence 358999995 999999999999999999986655
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=95.62 E-value=0.0059 Score=43.99 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=27.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC-CcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS-IDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~~d 47 (302)
|||.++| +|.+|+++++.|++.| ++|.+...+
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~ 33 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRG 33 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 7999998 6999999999998887 888776554
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.02 Score=39.41 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=45.8
Q ss_pred cccEEEEEcCCc----------chHHHHHHHHHhCCCcEEEeecC-----------------CCChhhHHHHHhhcCCCE
Q 022112 13 KPLKFLIYGRTG----------WIGGLLGKLCQAQSIDFTYGSGR-----------------LENRASLEADIAAVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG----------~iG~~l~~~L~~~g~~V~~~~~d-----------------l~~~~~~~~~~~~~~~d~ 65 (302)
..+||||+|+.. |-+.+.++.|.+.|++++.+..+ -...+.+.++++..+||.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~aD~lYfePlt~e~v~~Ii~~E~pd~ 85 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDA 85 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhhcceeeeecCCHHHHHHHHHHhCcCC
Confidence 346999999743 67889999999999999883332 334678899999889999
Q ss_pred EEEccc
Q 022112 66 VFNAAG 71 (302)
Q Consensus 66 Vi~~a~ 71 (302)
|+-..|
T Consensus 86 il~~~G 91 (127)
T d1a9xa3 86 VLPTMG 91 (127)
T ss_dssp EECSSS
T ss_pred eEEEee
Confidence 985544
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.012 Score=43.87 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=25.8
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..|||+||+|-+|+..++.+...|.++++
T Consensus 32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi 60 (187)
T d1vj1a2 32 QTMVVSGAAGACGSLAGQIGHLLGCSRVV 60 (187)
T ss_dssp CEEEESSTTSTTGGGHHHHHHHTTCSEEE
T ss_pred CEEEEECCCchhhHHHHHHHHHcCCccee
Confidence 47999999999999999999999987655
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.45 E-value=0.062 Score=37.22 Aligned_cols=78 Identities=10% Similarity=-0.064 Sum_probs=51.2
Q ss_pred cEEEEEcCC---cchHHHHHHHHHhCC-CcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhh
Q 022112 15 LKFLIYGRT---GWIGGLLGKLCQAQS-IDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESH 84 (302)
Q Consensus 15 ~~ilItGat---G~iG~~l~~~L~~~g-~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~ 84 (302)
++|.|+||| +..|..+.+.|.+.| ++|+.+.....+ ..++.++-. .+|.++-+...
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~--~vDlvvi~vp~------------ 74 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPD--EIDLAIIVVPK------------ 74 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSS--CCSEEEECSCH------------
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCC--CCceEEEecCh------------
Confidence 589999999 899999999998766 577774332111 112222222 78888866431
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 85 KVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 85 ~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
..+..+++.|.+.+++ .+.+|+
T Consensus 75 ---------~~~~~~~~~~~~~g~~~~vi~s~ 97 (129)
T d2csua1 75 ---------RFVKDTLIQCGEKGVKGVVIITA 97 (129)
T ss_dssp ---------HHHHHHHHHHHHHTCCEEEECCC
T ss_pred ---------HHhHHHHHHHHHcCCCEEEEecc
Confidence 1234578888888998 566665
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.025 Score=41.02 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=45.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++|+|.|.+..+|+.|+..|.++|..|+.....-.+ +.+.+. +.|+||.++|..
T Consensus 36 ~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~---l~~~~~--~ADivI~a~G~p 91 (166)
T d1b0aa1 36 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN---LRHHVE--NADLLIVAVGKP 91 (166)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC---HHHHHH--HCSEEEECSCCT
T ss_pred ccceEEEEeccccccHHHHHHHHHhhccccccccccch---hHHHHh--hhhHhhhhccCc
Confidence 46799999999999999999999999998775544333 445566 789999999966
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.36 E-value=0.024 Score=39.02 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=39.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCC----CChh---hHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRL----ENRA---SLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl----~~~~---~~~~~~~~~~~d~Vi~ 68 (302)
..+++|+| .|+||..++..|.+.|.+|+++..+- .|++ .+.+.+++.++++..+
T Consensus 20 P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~ 80 (122)
T d1h6va2 20 PGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80 (122)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred CCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence 35899998 69999999999999999999987661 2222 3455566556665544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.31 E-value=0.097 Score=38.23 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=28.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+|-++| .|.+|+.+++.|+++||+|+++..+
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~ 34 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRT 34 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3799998 7999999999999999999986554
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.30 E-value=0.046 Score=39.94 Aligned_cols=90 Identities=18% Similarity=0.007 Sum_probs=51.7
Q ss_pred ccEEEEEcCCcchHHH--HHHHHHhC----CCcEEEeecCCCCh-----------------------hhHHHHHhhcCCC
Q 022112 14 PLKFLIYGRTGWIGGL--LGKLCQAQ----SIDFTYGSGRLENR-----------------------ASLEADIAAVKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~--l~~~L~~~----g~~V~~~~~dl~~~-----------------------~~~~~~~~~~~~d 64 (302)
.|||.|+|| |.+|.. ++..|+.. +.+++.+..|-... .+..+++. ++|
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~--dad 78 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII--DAD 78 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT--TCS
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc--CCC
Confidence 579999995 888865 34444432 35777755542111 12334444 789
Q ss_pred EEEEccccCCCCCcchhhhhHHHH------------------------HHHhHHHHHHHHHHHHHhCCe
Q 022112 65 HVFNAAGVTGRPNVDWCESHKVET------------------------IRTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 65 ~Vi~~a~~~~~~~~~~~~~~~~~~------------------------~~~n~~~~~~ll~~~~~~~~~ 109 (302)
+|+..++..+ ......+.... ..-|+...+.+++..++....
T Consensus 79 ~Vv~~~~~g~---~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~ 144 (171)
T d1obba1 79 FVINTAMVGG---HTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPK 144 (171)
T ss_dssp EEEECCCTTH---HHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred eEeeeccccc---ccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcC
Confidence 9999988651 21111111111 123777778888888887644
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0095 Score=37.38 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=32.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChh
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRA 52 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~ 52 (302)
|++|.|+| +|++|+-++..-...|++++++..|-..+.
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa 38 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAEPAA 38 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSCGGG
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCCCcc
Confidence 46899998 799999999999999999999777655443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.028 Score=40.19 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=40.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE----------------------eecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY----------------------GSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~----------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
+|+|.|. |-+|..+++.|.++|++|++ +.+|.++++.++++--+ +++.||-+..
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~-~a~~vi~~~~ 80 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGID-RCRAILALSD 80 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTT-TCSEEEECSS
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccc-cCCEEEEccc
Confidence 6999985 89999999999999999887 56777777666554222 6788876543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.15 E-value=0.064 Score=37.67 Aligned_cols=79 Identities=14% Similarity=-0.003 Sum_probs=53.5
Q ss_pred ccEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhh
Q 022112 14 PLKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESH 84 (302)
Q Consensus 14 ~~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~ 84 (302)
.++|.|+||| +-.|..+++.|.+.||+|+.+.....+ ..++.++-. .+|.|+-+...
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~--~iD~v~i~vp~------------ 84 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPD--KIEVVDLFVKP------------ 84 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSS--CCSEEEECSCH------------
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCc--cceEEEEEeCH------------
Confidence 3579999998 789999999999999998885433211 122333323 67887765331
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 85 KVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 85 ~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
..+..+++.|.+.+++.+.+.+
T Consensus 85 ---------~~~~~~~~e~~~~g~k~v~~~~ 106 (139)
T d2d59a1 85 ---------KLTMEYVEQAIKKGAKVVWFQY 106 (139)
T ss_dssp ---------HHHHHHHHHHHHHTCSEEEECT
T ss_pred ---------HHHHHHHHHHHHhCCCEEEEec
Confidence 1234577888888988776644
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.14 E-value=0.013 Score=40.04 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-C----CCChh---hHHHHHhhcCCCEEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-R----LENRA---SLEADIAAVKPTHVFN 68 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-d----l~~~~---~~~~~~~~~~~d~Vi~ 68 (302)
.++++|+| .|++|..++..|.+.|.+|+++.. | ..|++ .+.+.+++.++++...
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~ 83 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN 83 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEEC-CCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcC
Confidence 46899999 699999999999999999998643 3 12332 2455566556665554
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.12 E-value=0.047 Score=40.15 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=24.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
|-||.|-| .|.||+.+++.|.+++ .+|++
T Consensus 1 MIKVaING-fGRIGR~v~Ral~~~~dievVa 30 (178)
T d1b7go1 1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVG 30 (178)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEE
T ss_pred CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEE
Confidence 45899998 8999999999999875 56666
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.042 Score=40.58 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=40.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCCCCh--------------------------hhHHHHHhhcCCCE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRLENR--------------------------ASLEADIAAVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl~~~--------------------------~~~~~~~~~~~~d~ 65 (302)
..++|+|+|+ |..|+.++..|.+.|. +++++.++.... +.+.+.+. .+|.
T Consensus 17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~di 93 (182)
T d1vi2a1 17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA--SADI 93 (182)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH--TCSE
T ss_pred CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc--ccce
Confidence 3468999995 7899999999999986 455555543333 33333344 7899
Q ss_pred EEEccccC
Q 022112 66 VFNAAGVT 73 (302)
Q Consensus 66 Vi~~a~~~ 73 (302)
||++....
T Consensus 94 iIN~Tp~G 101 (182)
T d1vi2a1 94 LTNGTKVG 101 (182)
T ss_dssp EEECSSTT
T ss_pred eccccCCc
Confidence 99997654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.11 E-value=0.024 Score=41.99 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=46.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC-----ChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE-----NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~-----~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..+++.|+| .|-||+.+++.|..-|.+|+++..+.. ..+++++.+. .+|+|+-+...+
T Consensus 41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~--~sDiv~~~~pl~ 103 (181)
T d1qp8a1 41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALR--EARAAVCALPLN 103 (181)
T ss_dssp TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHT--TCSEEEECCCCS
T ss_pred cCceEEEec-cccccccceeeeeccccccccccccccccceeeeechhhhhh--ccchhhcccccc
Confidence 457899999 799999999999999999999655432 2345788888 899998776654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.02 Score=41.79 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=27.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
...+|+|.|+ |-+|...++.+...|.+++++..+
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccc
Confidence 3458999986 889999999999999988874443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.95 E-value=0.011 Score=44.50 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=26.6
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|||.|+| .||+|..++..| ++|++|+++..|
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din 31 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDIL 31 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSC
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECC
Confidence 7999997 899999999766 579999997655
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.93 E-value=0.046 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=26.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
..+|+|+| +|-+|...++.+...|.+|+++
T Consensus 27 g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v 56 (170)
T d1e3ja2 27 GTTVLVIG-AGPIGLVSVLAAKAYGAFVVCT 56 (170)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEc-ccccchhhHhhHhhhccccccc
Confidence 34899997 7899999999999999998883
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.91 E-value=0.034 Score=41.36 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=44.9
Q ss_pred cEEEE-EcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLI-YGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilI-tGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
.+++| +||+|-+|...++.....|.+|+++.+.-.+.++..+.+++.+.|.||..
T Consensus 30 ~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 30 KDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred CEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 35777 58999999999999999999999987666666777777777788888864
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.055 Score=39.34 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++++.|+|.+..+|+.|+..|.++|..|+....+-.+ +.+.++ +.|+||.+++..
T Consensus 38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~---l~~~~~--~aDivi~a~G~~ 93 (170)
T d1a4ia1 38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH---LDEEVN--KGDILVVATGQP 93 (170)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---HHHHHT--TCSEEEECCCCT
T ss_pred ccceEEEEecCCccchHHHHHHHhccCceEEEeccccc---HHHHHh--hccchhhccccc
Confidence 45799999999999999999999999988876655443 345666 899999999976
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=94.87 E-value=0.037 Score=39.89 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=21.9
Q ss_pred CcccEEEEEcCCcchHHHH-HHHHHhCC-CcEEEe
Q 022112 12 SKPLKFLIYGRTGWIGGLL-GKLCQAQS-IDFTYG 44 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l-~~~L~~~g-~~V~~~ 44 (302)
++++|+.|+| +|.+|+.+ .+.|.... .+++++
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~av 35 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAM 35 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEE
Confidence 3457999999 99999865 55555443 455554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=94.79 E-value=0.019 Score=39.51 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=28.8
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++++|.| .|++|..++..|.+.|.+|+++...
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~ 62 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAGVHVSLVETQ 62 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEC-cchhHHHHHHHhhcccceEEEEeec
Confidence 35899998 7999999999999999999986543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.74 E-value=0.021 Score=39.38 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=28.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.++|+|.| .|++|..++..|.+.|.+|+++..
T Consensus 30 ~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~ 61 (123)
T d1nhpa2 30 VNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDI 61 (123)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEC-ChHHHHHHHHHhhccceEEEEEEe
Confidence 45899998 799999999999999999988654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.72 E-value=0.11 Score=40.12 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
.||+|.| .|-+|++++..|...|. +++++..|
T Consensus 31 ~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 31 SRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 4899999 67799999999999996 45665555
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.67 E-value=0.026 Score=38.62 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=29.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
..++++|+| +|+||-.++..|.+.|.+|+++..
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~ 53 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEA 53 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEe
Confidence 346899999 799999999999999999998653
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=94.65 E-value=0.14 Score=36.54 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.9
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
||-++| .|.+|+.+++.|++.|+.++.
T Consensus 2 kIg~IG-lG~MG~~ma~~L~~~g~~~~~ 28 (156)
T d2cvza2 2 KVAFIG-LGAMGYPMAGHLARRFPTLVW 28 (156)
T ss_dssp CEEEEC-CSTTHHHHHHHHHTTSCEEEE
T ss_pred eEEEEe-HHHHHHHHHHHHHhCCCEEEE
Confidence 688998 799999999999999987654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.63 E-value=0.018 Score=39.38 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=38.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-C-C---CChh---hHHHHHhhcCCCEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-R-L---ENRA---SLEADIAAVKPTHVF 67 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-d-l---~~~~---~~~~~~~~~~~d~Vi 67 (302)
.++++|.| .|++|-.++..|.+.|.+|+++.. | + .|++ .+.+.+++.+++...
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~ 82 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVT 82 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCEEEEEC-CchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEE
Confidence 45899999 699999999999999999999664 3 1 2332 244555555555444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.49 E-value=0.036 Score=40.36 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~ 43 (302)
..+|+|+|++|-+|...+..+...|. .|++
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~ 58 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIG 58 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEEeccccceeeeeecccccccccccc
Confidence 34899999999999999999998885 5655
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.45 E-value=0.029 Score=40.97 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=36.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhC-CCcEEEee-cCCC--------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYGS-GRLE--------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~-~dl~--------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+||.|.| +|++|+..++.|.+. +.+++++. .+-. ...+...... ++|+|+.+....
T Consensus 3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~--~~D~Vvi~tp~~ 69 (170)
T d1f06a1 3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHAD--DVDVLFLCMGSA 69 (170)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTT--TCSEEEECSCTT
T ss_pred cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhcc--ccceEEEeCCCc
Confidence 46899998 799999999999985 46666522 1100 1122233334 799999776543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.39 E-value=0.03 Score=41.02 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=45.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhh--------------cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA--------------VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~--------------~~~d~Vi~~a~~~ 73 (302)
..++|+|.| +|..++.++..|.+.+.+|+++.++....+.+.+.+.. ..+|.||++....
T Consensus 17 ~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 17 PNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 456899998 57789999999999888888888876555555555432 1679999997654
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=94.38 E-value=0.025 Score=42.45 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=44.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC--------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE--------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~--------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|.|+| .|.||+.+++.|..-|.+|.++..... ..+++.+.+. .+|+|+.+...+
T Consensus 42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~--~sDii~~~~plt 107 (197)
T d1j4aa1 42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYK--QADVISLHVPDV 107 (197)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHH--HCSEEEECSCCC
T ss_pred cCCeEEEec-ccccchhHHHhHhhhcccccccCcccccccccceeeecccccccc--ccccccccCCcc
Confidence 357999998 899999999999999999988543322 1235777787 789887776654
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.37 E-value=0.094 Score=35.49 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=50.9
Q ss_pred cEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCCC------hhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhH
Q 022112 15 LKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLEN------RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK 85 (302)
Q Consensus 15 ~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~~------~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~ 85 (302)
++|.|+|+| +-.|..+.+.|++.||+|+.+...... ..++.++-. .+|.++-+...
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~--~~D~vvi~vp~------------- 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPK--DVDVIVFVVPP------------- 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCT--TCCEEEECSCH-------------
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccc--cceEEEEEeCH-------------
Confidence 479999988 778999999999999998875433111 122333333 67888755331
Q ss_pred HHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 86 VETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 86 ~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
..+..+++.|.+.+++.+.+
T Consensus 67 --------~~~~~~l~~~~~~g~k~v~~ 86 (116)
T d1y81a1 67 --------KVGLQVAKEAVEAGFKKLWF 86 (116)
T ss_dssp --------HHHHHHHHHHHHTTCCEEEE
T ss_pred --------HHHHHHHHHHHhcCCceEEe
Confidence 12335777788888886655
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.043 Score=35.25 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=37.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC--------CCChhhHHHHHhhcCCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR--------LENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d--------l~~~~~~~~~~~~~~~d~Vi 67 (302)
|||||+| +|-=-.+|+..|.+.++++.+..++ ..+.+.+..+....++|.||
T Consensus 1 MkVLviG-sGgREHAia~~l~~s~~~v~~~pGN~G~~~~~~~~~~~~~~~~~~~~~idlvi 60 (90)
T d1vkza2 1 VRVHILG-SGGREHAIGWAFAKQGYEVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVI 60 (90)
T ss_dssp CEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCTTGGGTSEECCCCTHHHHHTSCSSCEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHhcCCCeEEEecCCccccccceeccchhhHHHHHhccceeEE
Confidence 7999999 6767888999999999988875543 12334455566666788765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.22 E-value=0.068 Score=38.74 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=38.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
...+|+|+|+ |.+|...++.+...|.+|+++..+-...+ ..++.+.|.+|+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~----~a~~lGa~~~i~~ 78 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE----DAMKMGADHYIAT 78 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH----HHHHHTCSEEEEG
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHH----HhhccCCcEEeec
Confidence 3458999986 89999999988889999988766533322 3344578888864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.18 E-value=0.066 Score=35.99 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=31.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE 49 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~ 49 (302)
.+++|||+| .|-+|..-++.|++.|.+|+++..+.+
T Consensus 11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 356999999 699999999999999999998766654
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.15 E-value=0.13 Score=37.38 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=23.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCC-CcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQS-IDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g-~~V~~ 43 (302)
|+||.|-| -|-||+.+.+.|.+++ .++++
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vva 30 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIG 30 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEE
Confidence 56899998 8999999999998876 45554
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.12 E-value=0.028 Score=38.07 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=28.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.++++|.| .|++|-.++..|.+.|++|+++..
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~ 52 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEA 52 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccceEEEee
Confidence 45899998 799999999999999999988643
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.07 E-value=0.025 Score=45.85 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=28.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
++||+|+| +|+-|...|..|.++|++|+++.
T Consensus 2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viE 32 (314)
T d2bi7a1 2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIID 32 (314)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEE
Confidence 57999999 79999999999999999999844
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.03 Score=38.02 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=28.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.+|++|+| .|++|..++..|.+.|.+|+++..
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~ 52 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEM 52 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccccEEEEEee
Confidence 35899998 799999999999999999988654
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.058 Score=38.84 Aligned_cols=57 Identities=9% Similarity=0.023 Sum_probs=43.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC----------hhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN----------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~----------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++.|.| .|.+|+.+++.|...|.+|++...|... ...+++++. ..|+||-+.+..
T Consensus 24 Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~--~adivvtaTGn~ 90 (163)
T d1li4a1 24 GKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ--EGNIFVTTTGCI 90 (163)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTT--TCSEEEECSSCS
T ss_pred CCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhh--hccEEEecCCCc
Confidence 46899998 9999999999999999999997776211 112344444 679999887754
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.96 E-value=0.035 Score=38.71 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=29.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.++++|+| +|++|..++..|.+.|.+|+++...
T Consensus 35 ~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~ 67 (133)
T d1q1ra2 35 DNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTA 67 (133)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhhCcceeeeeec
Confidence 45899998 7999999999999999999986643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.13 Score=37.25 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~ 43 (302)
-+|+|+|+ |-+|...+..+...|. +|++
T Consensus 28 d~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~ 56 (171)
T d1pl8a2 28 HKVLVCGA-GPIGMVTLLVAKAMGAAQVVV 56 (171)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECC-CccHHHHHHHHHHcCCceEEe
Confidence 47999985 9999999999999998 5766
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.91 E-value=0.03 Score=38.41 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=27.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
++++|.| .|++|-.++..|.+.|++|+++..
T Consensus 33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~ 63 (122)
T d1xhca2 33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHR 63 (122)
T ss_dssp SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CcEEEEC-CcHHHHHHHHHhhcccceEEEEec
Confidence 5799998 699999999999999999988654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.87 E-value=0.08 Score=38.86 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=25.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~ 44 (302)
.-+|||+|+ |-+|...++.+...|. +|+++
T Consensus 29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~ 59 (182)
T d1vj0a2 29 GKTVVIQGA-GPLGLFGVVIARSLGAENVIVI 59 (182)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTBSEEEEE
T ss_pred CCEEEEECC-Cccchhheeccccccccccccc
Confidence 458999996 8899999999999997 57763
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.063 Score=39.10 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=45.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC--------------------C--CChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR--------------------L--ENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d--------------------l--~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
.+++++|+|-+.-+|+.|+..|+++|..|+....+ + ...+.+.+... ..|+||..+
T Consensus 28 ~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~--~aDIvIsav 105 (171)
T d1edza1 28 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSL--DSDVVITGV 105 (171)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHH--HCSEEEECC
T ss_pred CCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccc--cCCEEEEcc
Confidence 56799999999999999999999999888763211 0 12345666666 789999888
Q ss_pred ccC
Q 022112 71 GVT 73 (302)
Q Consensus 71 ~~~ 73 (302)
+..
T Consensus 106 G~p 108 (171)
T d1edza1 106 PSE 108 (171)
T ss_dssp CCT
T ss_pred CCC
Confidence 765
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.85 E-value=0.075 Score=39.94 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec-----------------------------CCCChhhHHHHHhhcCCCE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG-----------------------------RLENRASLEADIAAVKPTH 65 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~-----------------------------dl~~~~~~~~~~~~~~~d~ 65 (302)
|||++.| ++-.|..+.+.|.+.|++|.++.. ++.+ +.+.+.+.+.++|.
T Consensus 1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~-~~~~~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNH-PLWVERIAQLSPDV 78 (203)
T ss_dssp CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCS-HHHHHHHHHTCCSE
T ss_pred CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccc-hhhhhhhhhhcccc
Confidence 7899997 566899999999999999876332 1222 33455667778998
Q ss_pred EEEccc
Q 022112 66 VFNAAG 71 (302)
Q Consensus 66 Vi~~a~ 71 (302)
+|.+..
T Consensus 79 ii~~g~ 84 (203)
T d2blna2 79 IFSFYY 84 (203)
T ss_dssp EEEESC
T ss_pred eeeeec
Confidence 887755
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.029 Score=40.07 Aligned_cols=36 Identities=22% Similarity=0.139 Sum_probs=31.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE 49 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~ 49 (302)
..+++||+|| |.+|..-++.|++.|-+|+++..+++
T Consensus 12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~~~ 47 (150)
T d1kyqa1 12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPDLH 47 (150)
T ss_dssp TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3569999995 99999999999999999999866654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.06 Score=39.63 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=30.9
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+.+||+|+| +|.-|-..+..|.++||+|+++..+
T Consensus 41 ~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~ 75 (179)
T d1ps9a3 41 VQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAH 75 (179)
T ss_dssp SSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEecc
Confidence 4557999999 7999999999999999999997654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.51 E-value=0.043 Score=42.40 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=29.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+||+|+| .|..|...+..|.++|++|+++..+
T Consensus 7 ~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4899999 6999999999999999999998765
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.50 E-value=0.1 Score=38.83 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=44.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC----------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN----------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~----------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..+++.|+| .|-||+.+++.|..-|.+|.+....... ..++.+++. .+|+|+-+...+
T Consensus 48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~--~sD~i~~~~plt 115 (193)
T d1mx3a1 48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLF--HSDCVTLHCGLN 115 (193)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred eCceEEEec-cccccccceeeeeccccceeeccCcccccchhhhccccccchhhccc--cCCEEEEeeccc
Confidence 356899998 8999999999999999999886544332 235677777 788887666544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.44 E-value=0.1 Score=37.94 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=24.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..+|+|+|+ |.+|...+..+...|.++++
T Consensus 29 g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~ 57 (174)
T d1f8fa2 29 ASSFVTWGA-GAVGLSALLAAKVCGASIII 57 (174)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHHHTCSEEE
T ss_pred CCEEEEeCC-CHHHhhhhhcccccccceee
Confidence 458999996 99999999999888987655
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.13 Score=38.55 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=26.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
..|||+++| ++..+..+.+.|.+.|+++.++
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~V 32 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGV 32 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEE
Confidence 468999998 6788999999999999997763
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.059 Score=37.01 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=28.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
.++++|+| .|++|-.++..|.+.|.+|+++..
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~ 53 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIR 53 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEee
Confidence 36899999 699999999999999999998655
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.30 E-value=0.071 Score=38.97 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=39.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeec-----------------CCCCh---hhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSG-----------------RLENR---ASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~-----------------dl~~~---~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
.-+|+|+|+ |-+|...++.+...|. +|+++.. |..+. +.+.+.....++|+||.+++.
T Consensus 28 g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174)
T d1jqba2 28 GSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred CCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence 347999985 9999999999999996 5766222 22221 122233333468999999885
Q ss_pred C
Q 022112 73 T 73 (302)
Q Consensus 73 ~ 73 (302)
.
T Consensus 107 ~ 107 (174)
T d1jqba2 107 S 107 (174)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.1 Score=38.59 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=45.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..+++.|.| .|.||+.+++.|..-|.+|.+...+... .+++++.+. ..|+|+-++..+
T Consensus 43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~--~sDii~i~~plt 107 (188)
T d1sc6a1 43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN--MSDVVSLHVPEN 107 (188)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHH--HCSEEEECCCSS
T ss_pred cceEEEEee-cccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHh--hccceeecccCC
Confidence 356899997 8999999999999999999986544221 235788888 789887776655
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.13 E-value=0.2 Score=36.11 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=46.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC------------------CCChhhHHHHHhhcCCCEEEEccccCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR------------------LENRASLEADIAAVKPTHVFNAAGVTG 74 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d------------------l~~~~~~~~~~~~~~~d~Vi~~a~~~~ 74 (302)
-|++|+| .|-.|..-++.+...|-+|+++..+ ..+.+.+.+.+. ++|+||-++-..+
T Consensus 33 a~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~--~aDivI~aalipG 107 (168)
T d1pjca1 33 GKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVA--EADLLIGAVLVPG 107 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHH--TCSEEEECCCCTT
T ss_pred cEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhc--cCcEEEEeeecCC
Confidence 4899999 6999999999999999999995544 345556777777 8999999988764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.11 E-value=0.15 Score=35.03 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=50.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh-CCCcEEEeecC-------------CCChhhHHHHHhhcCCCEEEEccccCCCCCcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA-QSIDFTYGSGR-------------LENRASLEADIAAVKPTHVFNAAGVTGRPNVD 79 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~-~g~~V~~~~~d-------------l~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~ 79 (302)
..+++|.| +|.+|+.|++++.. .+++++++.-| +...+.+.+...+ .++.++-+...
T Consensus 3 ~~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~-~i~iai~~i~~------- 73 (126)
T d2dt5a2 3 KWGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPG-RIEIALLTVPR------- 73 (126)
T ss_dssp CEEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTT-TCCEEEECSCH-------
T ss_pred CceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhh-cccEEEEeCCH-------
Confidence 34899999 69999999998754 57788873333 1134556666553 55555533221
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcCC
Q 022112 80 WCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATG 116 (302)
Q Consensus 80 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS~ 116 (302)
.....+++.|.+.+++ +.-++..
T Consensus 74 --------------~~~~~I~d~l~~~gIk~I~~f~~~ 97 (126)
T d2dt5a2 74 --------------EAAQKAADLLVAAGIKGILNFAPV 97 (126)
T ss_dssp --------------HHHHHHHHHHHHHTCCEEEECSSS
T ss_pred --------------HHHHHHHHHHHHcCCCEEeecCce
Confidence 1123477788888988 5555543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=93.04 E-value=0.038 Score=43.63 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=28.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|+|+|+| +|.-|...+..|.++|++|+++..
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~ 31 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLES 31 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEec
Confidence 7899999 599999999999999999999654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.00 E-value=0.046 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=29.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
..++++|+| .|++|-.++..|.+.|.+|+++...
T Consensus 24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~ 57 (123)
T d1dxla2 24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFA 57 (123)
T ss_dssp CCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred cCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEc
Confidence 345899998 7999999999999999999996543
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.089 Score=39.52 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=26.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
|||++.| ++..|..+.+.|.++|++|.++.
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~ 30 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVF 30 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEE
Confidence 7999998 67899999999999999998743
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.82 E-value=0.064 Score=36.88 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.3
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
..+++|+| .|+||-.++..|.+.|.+|+++..
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~ 57 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEM 57 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEe
Confidence 45899999 799999999999999999998543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.80 E-value=0.19 Score=35.98 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=39.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
..+|+|.|+ |-+|...++.+...|.+|+++..+ ++.+ +..++.++|.+|+..
T Consensus 28 g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~---~~~~-~~a~~~Ga~~~i~~~ 79 (166)
T d1llua2 28 GQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID---DAKL-ELARKLGASLTVNAR 79 (166)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC---HHHH-HHHHHTTCSEEEETT
T ss_pred CCEEEEeec-cccHHHHHHHHHHcCCccceecch---hhHH-HhhhccCcccccccc
Confidence 458999985 889999999999999988877543 3333 445666889988653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.64 E-value=0.53 Score=33.82 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=32.6
Q ss_pred ccEEEEEcCCcchHHH-HHHHHHhCC-----CcEEEeecCCCChh-----------------------hHHHHHhhcCCC
Q 022112 14 PLKFLIYGRTGWIGGL-LGKLCQAQS-----IDFTYGSGRLENRA-----------------------SLEADIAAVKPT 64 (302)
Q Consensus 14 ~~~ilItGatG~iG~~-l~~~L~~~g-----~~V~~~~~dl~~~~-----------------------~~~~~~~~~~~d 64 (302)
..||.|+|| |.+|.. ++..|+.+- .+++.+..|-...+ +..++++ +.|
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~--~AD 79 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT--DVD 79 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS--SCS
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC--CCC
Confidence 468999997 445544 444554431 25655443311111 1234444 899
Q ss_pred EEEEccccC
Q 022112 65 HVFNAAGVT 73 (302)
Q Consensus 65 ~Vi~~a~~~ 73 (302)
+||.+|+..
T Consensus 80 ~Vvitag~~ 88 (167)
T d1u8xx1 80 FVMAHIRVG 88 (167)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCcC
Confidence 999999976
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=92.60 E-value=0.13 Score=38.47 Aligned_cols=58 Identities=17% Similarity=0.027 Sum_probs=44.2
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC-------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE-------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~-------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..++|.|+| .|-||+.+++.|..-|.+|+++..... +..++.+.+. .+|+|+-+...+
T Consensus 44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~--~~D~v~~~~plt 108 (199)
T d1dxya1 44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK--QSDVIDLHVPGI 108 (199)
T ss_dssp GGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHH--HCSEEEECCCCC
T ss_pred cceeeeeee-cccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHH--hcccceeeeccc
Confidence 356899998 899999999999999999988543322 1235778888 789887766544
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.58 E-value=0.074 Score=36.13 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=37.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC--C---CCh---hhHHHHHhhcCCCEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR--L---ENR---ASLEADIAAVKPTHV 66 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d--l---~~~---~~~~~~~~~~~~d~V 66 (302)
.++++|+| +|++|..++..|.+.|.+|+++... + .++ ..+.+.+++.++++.
T Consensus 22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~ 81 (121)
T d1mo9a2 22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEII 81 (121)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEE
Confidence 46899998 7999999999999999999996543 1 222 235556665555533
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.54 E-value=0.22 Score=35.25 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=38.9
Q ss_pred EEEEE-cCCcchHHHHHHHHHhCCCcEEEeecCC--------CChhhHHHHHhhcCCCEEEEc
Q 022112 16 KFLIY-GRTGWIGGLLGKLCQAQSIDFTYGSGRL--------ENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 16 ~ilIt-GatG~iG~~l~~~L~~~g~~V~~~~~dl--------~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+++|. .+.||+|..++..|.+.|++|+++..+- .....+.+.+.+.+++++.+.
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~ 103 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDH 103 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETE
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhHHHHHHHHHhhccceEEecc
Confidence 56665 3469999999999999999999976552 233446666776676666643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.53 E-value=0.098 Score=38.27 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=41.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhh-------------------cCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAA-------------------VKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~-------------------~~~d~Vi~~a~~~ 73 (302)
+.++|||+| +|..++.++..|.+.| +|+++.++....+.+.+.+.. ..+|.||++....
T Consensus 17 ~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g 94 (177)
T d1nvta1 17 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 94 (177)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred CCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence 456899999 5779999999998777 788877775555444433321 1678999986654
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.41 E-value=0.13 Score=39.35 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=28.1
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
..++|+|+| +|+-|...+..|.++|++|+++
T Consensus 48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~ 78 (233)
T d1djqa3 48 NKDSVLIVG-AGPSGSEAARVLMESGYTVHLT 78 (233)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEEc-ccHHHHHHHHHHHHhccceeeE
Confidence 456899999 7999999999999999999993
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.36 E-value=0.07 Score=41.33 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=29.4
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
.+||+|+| .|..|..++..|.++|++|+++..+
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~ 36 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAGVDVDVYERS 36 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45999999 6999999999999999999997653
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=92.31 E-value=0.21 Score=37.01 Aligned_cols=57 Identities=26% Similarity=0.256 Sum_probs=43.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCCh-----------hhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENR-----------ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~-----------~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++.|+| .|.||+.+++.|..-|.+|.+........ +++.+.+. .+|+|+-+...+
T Consensus 47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~--~sD~v~l~~plt 114 (191)
T d1gdha1 47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLS--VSQFFSLNAPST 114 (191)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHH--HCSEEEECCCCC
T ss_pred ccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHh--hCCeEEecCCCC
Confidence 46899998 79999999999999999998865543322 34677777 789887665554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.23 E-value=0.61 Score=33.52 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=29.9
Q ss_pred CCCEEEEccccCCCCCcchhhhh------------------HHHHHHHhHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 62 KPTHVFNAAGVTGRPNVDWCESH------------------KVETIRTNVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 62 ~~d~Vi~~a~~~~~~~~~~~~~~------------------~~~~~~~n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
+.|+||.+|+... ......+ ......-|+...+.+++.+++..-. +++.-|
T Consensus 77 gaDvVv~ta~~~~---~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 77 GADFVTTQFRVGG---LEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp TCSEEEECCCTTH---HHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCEEEEccccCC---CCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 8899999999762 1110000 0122345777778888888887544 444333
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.061 Score=43.04 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=28.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|..|+|+| +|+-|..+|..|.+.|++|.++..
T Consensus 1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk 32 (298)
T d1i8ta1 1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEK 32 (298)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECS
T ss_pred CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEEC
Confidence 45799999 799999999999999999999443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.15 E-value=0.06 Score=43.21 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCcccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 10 AGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 10 ~~~~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
..+..+||+|+| +|..|...+..|.++|++|+++...
T Consensus 26 ~~~~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 26 ATSNPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp CCSSCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCCCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 334556999999 7999999999999999999996643
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=0.66 Score=32.85 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=56.3
Q ss_pred EEEEE--cCCc-chHHHHHHHHHh-CCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHH
Q 022112 16 KFLIY--GRTG-WIGGLLGKLCQA-QSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRT 91 (302)
Q Consensus 16 ~ilIt--GatG-~iG~~l~~~L~~-~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~ 91 (302)
||+|. ++.. -+|..++..+++ .|++|+-.-.|.. ++++.+.+.+.++|+|.-.+-.+ .
T Consensus 8 kivi~tv~gD~HdiG~~iv~~~l~~~G~~Vi~LG~~~p-~e~~~~~~~~~~~d~i~lS~l~~-----------------~ 69 (156)
T d3bula2 8 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVP-AEKILRTAKEVNADLIGLSGLIT-----------------P 69 (156)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBC-HHHHHHHHHHHTCSEEEEECCST-----------------H
T ss_pred EEEEEeeCCChhhHHHHHHHHHHHHCCCEEEECCCCCC-HHHHHHHHHhhCCCEEEEecccc-----------------c
Confidence 56654 2222 379999986665 7999998877776 56666777777999998766654 2
Q ss_pred hHHHHHHHHHHHHHhCCe-EEEEcC
Q 022112 92 NVVGTLTLADVCRDKGLI-LINYAT 115 (302)
Q Consensus 92 n~~~~~~ll~~~~~~~~~-~v~~SS 115 (302)
.....+.+.+.+++.+.+ .|++..
T Consensus 70 ~~~~~~~~~~~l~~~g~~~~vivGG 94 (156)
T d3bula2 70 SLDEMVNVAKEMERQGFTIPLLIGG 94 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEES
T ss_pred chHHHHHHHHHHHhccccceEEEec
Confidence 344556788888888765 344443
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.26 Score=42.63 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=26.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL 48 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl 48 (302)
.+|+|.|+ |-+|..+++.|...|. .++++..|.
T Consensus 26 s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~ 59 (529)
T d1yova1 26 AHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQ 59 (529)
T ss_dssp CEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred CCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 48999996 6699999999999995 566655553
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.65 E-value=0.18 Score=36.51 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=22.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..+|+|.|+ |.+|...++.+...|..+++
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv 61 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVI 61 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCCCEEE
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhcCcccc
Confidence 347999985 99999999998888864433
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.62 E-value=0.23 Score=36.42 Aligned_cols=58 Identities=17% Similarity=0.050 Sum_probs=43.4
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC---------hhhHHHHHhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN---------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~---------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
..+++.|+| .|.||+.+++.|..-|.+|.+....... ..++++++. ++|+|+-+...+
T Consensus 43 ~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~--~sDiv~~~~Plt 109 (184)
T d1ygya1 43 FGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLA--RADFISVHLPKT 109 (184)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHH--HCSEEEECCCCS
T ss_pred cceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHh--hCCEEEEcCCCC
Confidence 346888888 7999999999999999999886543332 234667777 789887766655
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=91.37 E-value=0.11 Score=38.79 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=40.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHH------------HhhcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEAD------------IAAVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~------------~~~~~~d~Vi~~a~~~ 73 (302)
..++|.|-| -|-+|+++++.|.+.|..|++...| .+.+... +-..++|+++=||...
T Consensus 26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d---~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA~~~ 94 (201)
T d1c1da1 26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTD---TERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGG 94 (201)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC---HHHHHHHHHTTCEECCGGGGGGCCCSEEEECSCSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecch---HHHHHHHHhhcccccCccccccccceeeecccccc
Confidence 457999998 8999999999999999999875443 2222211 1223889998776643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=91.30 E-value=0.11 Score=38.42 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=43.0
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCC-----------hhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLEN-----------RASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~-----------~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.+++.|.| .|-||+.+++.|..-|.+|.+....... ..++.+.+. .+|+|+-+...+
T Consensus 44 ~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~--~sD~v~~~~plt 111 (188)
T d2naca1 44 AMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYP--VCDVVTLNCPLH 111 (188)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGG--GCSEEEECSCCC
T ss_pred ccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHH--hccchhhccccc
Confidence 46899998 8999999999999999999886654332 233566777 789886665544
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=91.18 E-value=0.091 Score=41.04 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=27.7
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|+|+| +|.+|..++.+|.++|++|+++..+
T Consensus 7 vvIIG-aGi~Gls~A~~La~~G~~V~vlE~~ 36 (276)
T d1ryia1 7 AVVIG-GGIIGSAIAYYLAKENKNTALFESG 36 (276)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 99999 6999999999999999999997754
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.18 E-value=0.36 Score=35.18 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhC-CCcEEEe-ecCCC----------------ChhhHHHHHhhcCCCEEEEcc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQ-SIDFTYG-SGRLE----------------NRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~-g~~V~~~-~~dl~----------------~~~~~~~~~~~~~~d~Vi~~a 70 (302)
+||.|+| +|.+|+..++.|... +.+++++ ..|.. -.+++++.+++.++|.|+-+.
T Consensus 2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~t 74 (184)
T d1ydwa1 2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPL 74 (184)
T ss_dssp EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECC
T ss_pred eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecc
Confidence 6899999 789999999998875 5677653 11100 123566777766899998543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.86 E-value=0.12 Score=38.03 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=27.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~ 45 (302)
.+||+|+| +|..|...+..|.++|+ +|+++.
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E 35 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFE 35 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEE
Confidence 46899999 69999999999999998 587744
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.84 E-value=0.041 Score=42.16 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=25.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
|||+|+| +|.+|...+.+|+++|++|++
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCceE
Confidence 7999999 699999999999999987644
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.68 E-value=0.49 Score=34.22 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=39.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEEeec-----------------CCC----ChhhHHHHHhhcCCCEEEEcc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTYGSG-----------------RLE----NRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~~~~-----------------dl~----~~~~~~~~~~~~~~d~Vi~~a 70 (302)
...+|+|+| +|-||...+..+...|.. |++... |.. ....+.+.....++|+||.+.
T Consensus 28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~ 106 (174)
T d1e3ia2 28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA 106 (174)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEec
Confidence 345899998 599999999999999975 544111 111 112233344445889999998
Q ss_pred ccC
Q 022112 71 GVT 73 (302)
Q Consensus 71 ~~~ 73 (302)
+..
T Consensus 107 G~~ 109 (174)
T d1e3ia2 107 GTA 109 (174)
T ss_dssp CCH
T ss_pred ccc
Confidence 843
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=90.59 E-value=0.38 Score=35.51 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=54.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCc-E--EEeecCC------------------------------------CChhhHH
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSID-F--TYGSGRL------------------------------------ENRASLE 55 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~-V--~~~~~dl------------------------------------~~~~~~~ 55 (302)
|||.|+| -|.-|.+++..|.+.+.+ | +++..|. .+.+.+.
T Consensus 1 ~kI~viG-vGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~I~ 79 (194)
T d1w5fa1 1 LKIKVIG-VGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIR 79 (194)
T ss_dssp CCEEEEE-EHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHHHH
T ss_pred CeEEEEE-eCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHHHH
Confidence 5899998 688999999999987643 3 4433330 0233455
Q ss_pred HHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 56 ADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 56 ~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
+.++ +.|.||-+|++.+ . +-..++.-+++.|++.++..|-+
T Consensus 80 ~~l~--~~d~vfi~AGlGG------g---------TGtgaapviA~~ake~g~lvv~i 120 (194)
T d1w5fa1 80 EVLQ--DTHMVFITAGFGG------G---------TGTGASPVIAKIAKEMGILTVAI 120 (194)
T ss_dssp HHTT--TCSEEEEEEETTS------S---------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhc--CCCeEEEEEecCC------C---------cccchHHHHHHHHHHcCCceEEE
Confidence 6666 8999999999884 1 11223345889999988754443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.52 E-value=0.46 Score=37.44 Aligned_cols=60 Identities=15% Similarity=-0.011 Sum_probs=43.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEee--------cCCCChhhHHHHHh-------------------hcCCCE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS--------GRLENRASLEADIA-------------------AVKPTH 65 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~--------~dl~~~~~~~~~~~-------------------~~~~d~ 65 (302)
..++|+|-| -|.+|+++++.|.+.|..|+++. .|-.|.+.+.+... ..++|+
T Consensus 35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DI 113 (293)
T d1hwxa1 35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDI 113 (293)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccE
Confidence 456899998 79999999999999999998732 22234455544332 237899
Q ss_pred EEEccccC
Q 022112 66 VFNAAGVT 73 (302)
Q Consensus 66 Vi~~a~~~ 73 (302)
++=||-..
T Consensus 114 liPaA~~~ 121 (293)
T d1hwxa1 114 LIPAASEK 121 (293)
T ss_dssp EEECSSSS
T ss_pred Eeeccccc
Confidence 99887754
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.49 E-value=0.14 Score=37.21 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=26.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..+|+|+| +|++|-.++..|.+.|.+|+++.
T Consensus 3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~ 33 (185)
T d1q1ra1 3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRL 33 (185)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEE
Confidence 45899998 79999999999999999887643
|
| >d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.48 E-value=0.32 Score=36.46 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=55.1
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc-E--EEeecC------------------C------------------CChhhH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID-F--TYGSGR------------------L------------------ENRASL 54 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~-V--~~~~~d------------------l------------------~~~~~~ 54 (302)
..||.|+| -|.-|.+++..|.+.|.+ | +++..| + .+.+.+
T Consensus 15 ~~ki~ViG-vGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~~~I 93 (209)
T d2vapa1 15 KAKITVVG-CGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEI 93 (209)
T ss_dssp CCCEEEEE-EHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTHHHH
T ss_pred CCcEEEEE-eCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 35899998 688999999999998753 4 332222 0 122356
Q ss_pred HHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 55 EADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 55 ~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
.+.++ +.|.||-+||..+ .. -..++.-+++.|++.++..+-+
T Consensus 94 ~~~l~--~~d~vfi~AGlGG------GT---------Gsgaapvia~~ake~g~lvv~i 135 (209)
T d2vapa1 94 KAAIQ--DSDMVFITCGLGG------GT---------GTGSAPVVAEISKKIGALTVAV 135 (209)
T ss_dssp HHHHT--TCSEEEEEEETTS------SH---------HHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhcc--CCCEEEEEEeCCC------Cc---------cccHHHHHHHHHHHcCCcEEEE
Confidence 66666 8999999999884 11 1223345888999988764444
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.36 E-value=0.25 Score=35.67 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=51.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCC-Cc-EEEeecCC----C-----ChhhHHHHHhhcCCCEEEEccccCCCCCcchh
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQS-ID-FTYGSGRL----E-----NRASLEADIAAVKPTHVFNAAGVTGRPNVDWC 81 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g-~~-V~~~~~dl----~-----~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~ 81 (302)
..++|.|+| +|.+|+..++.|.+.. .+ +.++..+- . ...++++.+...++|+|+-+.... . -
T Consensus 6 ~k~kv~iIG-~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~----~--H 78 (172)
T d1lc0a1 6 GKFGVVVVG-VGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESS----S--H 78 (172)
T ss_dssp CSEEEEEEC-CSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGG----G--H
T ss_pred CCcEEEEEc-CCHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHhhccCcCCHHHHHhCCCcchhhhccccc----c--c
Confidence 357999998 6999999888887643 12 22211000 0 012467788877889887554322 1 1
Q ss_pred hhhHHHHH------------HHhHHHHHHHHHHHHHhCCe
Q 022112 82 ESHKVETI------------RTNVVGTLTLADVCRDKGLI 109 (302)
Q Consensus 82 ~~~~~~~~------------~~n~~~~~~ll~~~~~~~~~ 109 (302)
...-...+ ..|+.-...+++.+++.+..
T Consensus 79 ~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~ 118 (172)
T d1lc0a1 79 EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV 118 (172)
T ss_dssp HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence 11111111 14566667788888887754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.34 E-value=0.4 Score=34.52 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=23.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..+|||.|+ |.+|...++.+...|..+++
T Consensus 29 G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi 57 (176)
T d2fzwa2 29 GSVCAVFGL-GGVGLAVIMGCKVAGASRII 57 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEE
T ss_pred CCEEEEecc-hhHHHHHHHHHHHHhcCceE
Confidence 448999997 56899999999999965444
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=90.30 E-value=0.13 Score=40.43 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=28.2
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|||+|+| +|.-|...+.+|.+.|++|+++..
T Consensus 2 KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~ 32 (373)
T d1seza1 2 KRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEA 32 (373)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHTTSCEEEEECS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeC
Confidence 6899998 799999999999999999999654
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=90.24 E-value=0.99 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=40.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------eecCCCChhhHHHHHhhcCCCEEE
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------GSGRLENRASLEADIAAVKPTHVF 67 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------~~~dl~~~~~~~~~~~~~~~d~Vi 67 (302)
-||+|-|-||..|+.-++++++.|-+|++ ...++-=.++++++.++.++|+=+
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~Sv 68 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASV 68 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEE
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEE
Confidence 38999999999999999999999999887 111222235677788777787643
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=90.04 E-value=0.24 Score=37.75 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=42.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh-------------hcCCCEEEEccccC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA-------------AVKPTHVFNAAGVT 73 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~-------------~~~~d~Vi~~a~~~ 73 (302)
..++|+|-| -|-+|+++++.|.+.|..|++...| ...+..... ..+||+++=||-..
T Consensus 38 ~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~---~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~~ 107 (230)
T d1leha1 38 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVN---KAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALGA 107 (230)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC---HHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeeccc---HHHHHHHHHhcCCcccCCcccccccccEeccccccc
Confidence 456899998 8999999999999999999875443 333333322 33889999988754
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.00 E-value=0.13 Score=38.09 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=25.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC--CcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~~ 46 (302)
|||+|+| +|++|-.++..|.+.+ .+|+++..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~ 33 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEK 33 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEES
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 7999999 6999999999998864 45666543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.17 Score=40.46 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=27.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 45 (302)
..||+|+| +|.-|...+..|.++|++|+++.
T Consensus 5 ~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlE 35 (449)
T d2dw4a2 5 TGKVIIIG-SGVSGLAAARQLQSFGMDVTLLE 35 (449)
T ss_dssp CCEEEEEC-CBHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEe
Confidence 44899999 79999999999999999999943
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.78 E-value=0.52 Score=33.52 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=37.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
..+|||.|+ |-+|...+..+...|.+|+++..+ ++. .+.+++.++|.+++.
T Consensus 28 g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~---~~r-~~~~k~~Ga~~~~~~ 78 (168)
T d1rjwa2 28 GEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG---DEK-LELAKELGADLVVNP 78 (168)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC---HHH-HHHHHHTTCSEEECT
T ss_pred CCEEEEeec-ccchhhhhHHHhcCCCeEeccCCC---HHH-hhhhhhcCcceeccc
Confidence 458999975 889999999999999998776543 232 334556688888764
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.14 E-value=0.45 Score=32.72 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=38.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFN 68 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~ 68 (302)
.+|||||+.. +-....+.|.++|+.++-......+.+.+.+.+. ++|+++-
T Consensus 3 ~kmKILv~d~---i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~--~~d~ii~ 53 (132)
T d1sc6a2 3 DKIKFLLVEG---VHQKALESLRAAGYTNIEFHKGALDDEQLKESIR--DAHFIGL 53 (132)
T ss_dssp SSCCEEECSC---CCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTT--SCSEEEE
T ss_pred CCCEEEEECC---CCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhc--CCcEEEE
Confidence 4579999974 5666778899999876655555556788888888 8898874
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=88.95 E-value=0.45 Score=32.90 Aligned_cols=78 Identities=9% Similarity=-0.086 Sum_probs=49.5
Q ss_pred cEEEEEcCC---cchHHHHHHHHHhCCCcEEEeecCCC-----C---hhhHHHHHhhcCCCEEEEccccCCCCCcchhhh
Q 022112 15 LKFLIYGRT---GWIGGLLGKLCQAQSIDFTYGSGRLE-----N---RASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83 (302)
Q Consensus 15 ~~ilItGat---G~iG~~l~~~L~~~g~~V~~~~~dl~-----~---~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~ 83 (302)
++|.|+||| +-.|..+.+.|.+.|+.+..+..... . ..++.++-. .+|.|+-+....
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~--~iD~v~v~~p~~---------- 81 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKE--PVDILDVFRPPS---------- 81 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCS--CCSEEEECSCHH----------
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccC--CCceEEEeccHH----------
Confidence 479999998 56899999999999999888543211 1 112222222 678777653311
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcC
Q 022112 84 HKVETIRTNVVGTLTLADVCRDKGLILINYAT 115 (302)
Q Consensus 84 ~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS 115 (302)
....+++.|.+.+++.+++.+
T Consensus 82 -----------~v~~~v~~~~~~g~k~i~~q~ 102 (136)
T d1iuka_ 82 -----------ALMDHLPEVLALRPGLVWLQS 102 (136)
T ss_dssp -----------HHTTTHHHHHHHCCSCEEECT
T ss_pred -----------HHHHHHHHHHhhCCCeEEEec
Confidence 122366677777888666644
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.79 E-value=1.7 Score=28.77 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=41.9
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+||||.=-.-.+...+...|.+.||+|... .+.++--+.+++..+|.|+-=....
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~g~~v~~a----~~~~eal~~~~~~~~dlillD~~mp 55 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKEGYEVVTA----FNGREALEQFEAEQPDIIILDLMLP 55 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE----SSHHHHHHHHHHHCCSEEEECSSCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEE----CCHHHHHHHHHhcCCCEEEeccccC
Confidence 479999888889999999999999998752 3455555566667999998644433
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.67 E-value=0.16 Score=40.02 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=28.0
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
+|+|+| .|..|..++..|.+.|++|+++...
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQ 34 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 699999 5899999999999999999997654
|
| >d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: TDP-epi-vancosaminyltransferase GtfA species: Amycolatopsis orientalis [TaxId: 31958]
Probab=88.62 E-value=0.26 Score=40.06 Aligned_cols=47 Identities=17% Similarity=0.009 Sum_probs=30.5
Q ss_pred cEEEEE-cCC-cch--HHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEE
Q 022112 15 LKFLIY-GRT-GWI--GGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 15 ~~ilIt-Gat-G~i--G~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
|||||+ ||| |.| --.|++.|.++||+|+++.. ....+.+++.+++.+
T Consensus 1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~-----~~~~~~v~~~g~~~~ 51 (391)
T d1pn3a_ 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLP-----PDYVERCAEVGVPMV 51 (391)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEC-----GGGHHHHHHHTCCEE
T ss_pred CEEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEEC-----hhhHhHHHHCCCeEE
Confidence 788884 455 444 44688999999999998653 223444554566643
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.62 E-value=0.19 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=25.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCc--EEEee
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSID--FTYGS 45 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~--V~~~~ 45 (302)
.+||+|+| .|+.|-.++..|.+.+++ |+++.
T Consensus 2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie 34 (186)
T d1fcda1 2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIE 34 (186)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEE
Confidence 46999999 699999999999998864 55543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=88.61 E-value=0.68 Score=35.46 Aligned_cols=30 Identities=13% Similarity=0.096 Sum_probs=27.3
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..++|+|-| -|.+|+++++.|.+.|..|++
T Consensus 30 ~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~ 59 (242)
T d1v9la1 30 EGKTVAIQG-MGNVGRWTAYWLEKMGAKVIA 59 (242)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEE
Confidence 456899998 899999999999999999887
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.21 Score=39.64 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=25.6
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|++=--.||-.|..|+++|+.+|++|+.+.+.
T Consensus 38 R~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 38 RFLDNFSSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred eEeCCCCchHHHHHHHHHHHHcCCEEEEEecC
Confidence 33333457999999999999999999997644
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=88.40 E-value=0.85 Score=32.70 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=37.7
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC-----------------CCC----hhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR-----------------LEN----RASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d-----------------l~~----~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
..+|||.|+. -+|...+..+...|. +|+++..+ ..+ .....+.....++|+||.+.+
T Consensus 29 GdtVlV~GaG-G~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G 107 (176)
T d2jhfa2 29 GSTCAVFGLG-GVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 107 (176)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCEEEEECCC-CcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence 4589999985 589999999999885 56552222 111 122223333347899999887
Q ss_pred cC
Q 022112 72 VT 73 (302)
Q Consensus 72 ~~ 73 (302)
..
T Consensus 108 ~~ 109 (176)
T d2jhfa2 108 RL 109 (176)
T ss_dssp CH
T ss_pred ch
Confidence 43
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=88.24 E-value=0.42 Score=34.05 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=44.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC----------ChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE----------NRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~----------~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.++++|.| =|++|+.+++.|...|-+|++...|.- ....++++++ ..|+||-+.+..
T Consensus 23 Gk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~--~aDi~vTaTGn~ 89 (163)
T d1v8ba1 23 GKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD--KGDFFITCTGNV 89 (163)
T ss_dssp TSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTT--TCSEEEECCSSS
T ss_pred CCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccc--cCcEEEEcCCCC
Confidence 46899998 799999999999999999999887731 1123455666 789999888865
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.24 E-value=0.26 Score=39.74 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=27.2
Q ss_pred CcccEEEEEcCCcchHHHHHHHHHhCC--CcEEEee
Q 022112 12 SKPLKFLIYGRTGWIGGLLGKLCQAQS--IDFTYGS 45 (302)
Q Consensus 12 ~~~~~ilItGatG~iG~~l~~~L~~~g--~~V~~~~ 45 (302)
+.++||+|+| +|.-|...+..|+++| ++|+++.
T Consensus 2 ~~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfE 36 (335)
T d2gv8a1 2 PTIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFE 36 (335)
T ss_dssp CSCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 3567999999 6999999999998876 5888743
|
| >d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=88.21 E-value=0.37 Score=35.99 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=41.6
Q ss_pred cEEEEEcCCcchH------HHHHHHHHhCCCcEEEeecCCC--Ch-hhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIG------GLLGKLCQAQSIDFTYGSGRLE--NR-ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG------~~l~~~L~~~g~~V~~~~~dl~--~~-~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|||||||=.=|-| ..+++.|.+++.+|.......+ +. +.+.+++++.++|.|+|++-..
T Consensus 1 mkILvTGF~pF~~~~~NpS~~i~~~L~~~~~~i~~~~LpV~~~~~~~~~~~~~~~~~pd~vih~G~~~ 68 (206)
T d1iu8a_ 1 MKILLTGFEPFGGDDKNPTMDIVEALSERIPEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAP 68 (206)
T ss_dssp CCEEEEEECCCTTCSCCHHHHHHHHHHHHCTTEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECT
T ss_pred CEEEEEeeCCCCCCCCChHHHHHHHhhcccCeEEEEEeeccHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 7899998655543 5788889888888777444333 22 2345566777999999997754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.95 E-value=0.12 Score=37.83 Aligned_cols=29 Identities=7% Similarity=-0.016 Sum_probs=25.2
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEE
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTY 43 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~ 43 (302)
..+|+|+| +|++|-.++..|.+.|.++.+
T Consensus 3 ~a~VvIIG-gG~~G~e~A~~l~~~g~~v~i 31 (183)
T d1d7ya1 3 KAPVVVLG-AGLASVSFVAELRQAGYQGLI 31 (183)
T ss_dssp CSSEEEEC-CSHHHHHHHHHHHHHTCCSCE
T ss_pred CCCEEEEC-ccHHHHHHHHHHHhcCCceEE
Confidence 34699999 799999999999999987665
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.71 E-value=0.24 Score=37.35 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=26.4
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|+|+| +|.-|...|..|.++|++|.++..
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~ 36 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDK 36 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcC
Confidence 79998 899999999999999999999544
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.28 Score=41.16 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=27.5
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGRL 48 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~dl 48 (302)
.||||+|+ |.+|+.+++.|...|. +++++..|.
T Consensus 38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 48999996 5599999999999997 677766663
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.58 E-value=0.86 Score=32.78 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=24.6
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCc-EEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSID-FTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~-V~~ 43 (302)
+..+|+|+|+ |-+|...++.+...|.. |++
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~ 57 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIG 57 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeec
Confidence 3458999985 88999999999999964 555
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.50 E-value=1.1 Score=32.15 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=24.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEe
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYG 44 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~ 44 (302)
.-.|+|+|+ |-+|...+..+...|. +|+++
T Consensus 30 g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~v 60 (176)
T d1d1ta2 30 GSTCVVFGL-GGVGLSVIMGCKSAGASRIIGI 60 (176)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEECC-CchhHHHHHHHHHcCCceEEEe
Confidence 347999985 9999999999999995 67773
|
| >d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Bacillus subtilis [TaxId: 1423]
Probab=87.24 E-value=0.8 Score=30.65 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=42.0
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
|.+||||.=-.-.+-..+...|.+.||+|.. ..+.++--+.+++..+|.|+-=..
T Consensus 1 M~krILiVDDd~~~~~~l~~~L~~~g~~v~~----a~~~~~al~~l~~~~~dlillD~~ 55 (121)
T d1mvoa_ 1 MNKKILVVDDEESIVTLLQYNLERSGYDVIT----ASDGEEALKKAETEKPDLIVLDVM 55 (121)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEE----ESSHHHHHHHHHHHCCSEEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEE----ECCHHHHHHHHhcccccEEEeccc
Confidence 3468999999999999999999999999876 234445455666679999885333
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=87.06 E-value=1.3 Score=31.94 Aligned_cols=56 Identities=14% Similarity=-0.067 Sum_probs=35.2
Q ss_pred ccEEEEEcCCcchHHH-HHHHHHhCCC--cEEEee-cCC-------------CChhhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGL-LGKLCQAQSI--DFTYGS-GRL-------------ENRASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~-l~~~L~~~g~--~V~~~~-~dl-------------~~~~~~~~~~~~~~~d~Vi~~a 70 (302)
.+||.|+| +|.+|+. .+..|.+.+. +++++. .|. .-..++++.+++.++|+|+-+.
T Consensus 3 kirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~t 75 (181)
T d1zh8a1 3 KIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTL 75 (181)
T ss_dssp CEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECC
T ss_pred CcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccc
Confidence 45899999 7999986 4677776543 555421 110 0123456677766899888553
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.02 E-value=0.32 Score=37.57 Aligned_cols=31 Identities=23% Similarity=0.178 Sum_probs=27.1
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCC-cEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~ 46 (302)
|+|+|+| .|..|..++..|.+.|. .|+++..
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er 33 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLES 33 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 6899999 69999999999999994 7877554
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=86.33 E-value=0.42 Score=31.95 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHH---hCCCcEEEeec-C-C---CChh---hHHHHHhhcCCCEEEEc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQ---AQSIDFTYGSG-R-L---ENRA---SLEADIAAVKPTHVFNA 69 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~---~~g~~V~~~~~-d-l---~~~~---~~~~~~~~~~~d~Vi~~ 69 (302)
..+++|.| +|++|-.++..|. .+|.+|+++.. | + .|++ .+.+.+++.++++....
T Consensus 20 p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 20 PRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred CCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence 45899999 5999999996555 45567888543 2 1 1322 35666676677776653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=86.32 E-value=0.33 Score=33.13 Aligned_cols=51 Identities=12% Similarity=-0.077 Sum_probs=36.4
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE------------------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY------------------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~------------------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
++|+|.| -|-+|..+++.|.. ++|.+ +.+|.++++.+.++-- .+++.++-+
T Consensus 1 kHivI~G-~g~~g~~l~~~L~~--~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i-~~A~~vi~~ 69 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELRG--SEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANV-RGARAVIVN 69 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSCG--GGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTC-TTCSEEEEC
T ss_pred CEEEEEC-CCHHHHHHHHHHcC--CCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhh-hcCcEEEEe
Confidence 3688898 58899999999854 44444 6788888877665321 267888855
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=85.66 E-value=0.78 Score=33.74 Aligned_cols=59 Identities=12% Similarity=0.075 Sum_probs=37.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC-----------------CCCh---hhHHHHHhhcCCCEEEEcccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR-----------------LENR---ASLEADIAAVKPTHVFNAAGV 72 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d-----------------l~~~---~~~~~~~~~~~~d~Vi~~a~~ 72 (302)
..+|||+|+ |-+|...+..+...|. +|+++..+ ..+. +.+.+.....++|++|.+.+.
T Consensus 26 G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~ 104 (195)
T d1kola2 26 GSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF 104 (195)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred CCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence 458999985 8999888888877776 45552221 1121 223333344478999999884
Q ss_pred C
Q 022112 73 T 73 (302)
Q Consensus 73 ~ 73 (302)
.
T Consensus 105 ~ 105 (195)
T d1kola2 105 E 105 (195)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=85.61 E-value=1.3 Score=32.06 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=28.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLE 49 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~ 49 (302)
+|+|+| .|-.|.+-++.....|-+|+++..+..
T Consensus 31 ~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 31 RVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred EEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 899999 699999999999999999999555443
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=85.52 E-value=0.35 Score=35.95 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=25.7
Q ss_pred cEEEEEcCCc-chHH-----HHHHHHHhCCCcEEEeecC
Q 022112 15 LKFLIYGRTG-WIGG-----LLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 15 ~~ilItGatG-~iG~-----~l~~~L~~~g~~V~~~~~d 47 (302)
+|++||| || .+|+ +|+..|.++|++|.++..|
T Consensus 2 ~~~~i~g-t~~GVGKTtvs~~La~aLa~~G~rVl~id~d 39 (224)
T d1byia_ 2 KRYFVTG-TDTEVGKTVASCALLQAAKAAGYRTAGYKPV 39 (224)
T ss_dssp EEEEEEE-SSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence 5899999 55 6775 6778999999999987655
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.26 E-value=1.2 Score=31.74 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCC
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSI 39 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~ 39 (302)
++.+|.|+| .|.||+.++++|.++..
T Consensus 3 k~i~I~l~G-~G~VG~~l~~~l~~~~~ 28 (168)
T d1ebfa1 3 KVVNVAVIG-AGVVGSAFLDQLLAMKS 28 (168)
T ss_dssp SEEEEEEEC-CSHHHHHHHHHHHHCCC
T ss_pred CEEEEEEEe-CCHHHHHHHHHHHHhHH
Confidence 466999998 99999999999998653
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=85.03 E-value=0.27 Score=40.73 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=24.9
Q ss_pred cEEEEEcC------CcchH---HHHHHHHHhCCCcEEEeec
Q 022112 15 LKFLIYGR------TGWIG---GLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGa------tG~iG---~~l~~~L~~~g~~V~~~~~ 46 (302)
||||+++. +|.+| ..|++.|.++||+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 78999775 35554 6678999999999998653
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=85.01 E-value=1.2 Score=29.60 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=42.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|||||.--.-.+...+...|...||+|.. ..+.++-.+.+++..+|.|+-=...+
T Consensus 1 mrILvVDDd~~~~~~l~~~L~~~G~~v~~----a~~g~eal~~l~~~~~dliilD~~mP 55 (119)
T d2pl1a1 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDD----AEDAKEADYYLNEHIPDIAIVDLGLP 55 (119)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE----ESSHHHHHHHHHHSCCSEEEECSCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEE----ECCHHHHHHHHHhcccceeehhccCC
Confidence 68999999999999999999999999875 23445555667777999988544443
|
| >d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Hypothetical protein BH3024 species: Bacillus halodurans [TaxId: 86665]
Probab=84.86 E-value=3.1 Score=27.44 Aligned_cols=80 Identities=9% Similarity=0.100 Sum_probs=53.5
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhH
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNV 93 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~ 93 (302)
.|||||.=-.-.+...+...|.+.|++|....- ..+.+..+.+...+|.||-=....+ . +
T Consensus 2 p~rILvVdDd~~~~~~l~~~L~~~g~~v~~~~~---~~~al~~l~~~~~~dliilD~~lp~---~-----~--------- 61 (118)
T d2b4aa1 2 PFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPS---GSAFFQHRSQLSTCDLLIVSDQLVD---L-----S--------- 61 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESS---HHHHHHTGGGGGSCSEEEEETTCTT---S-----C---------
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCCeEEECC---HHHHHHHHHhcCCCCEEEEeCCCCC---C-----C---------
Confidence 479999999999999999999999999876321 1333444444457899885444431 1 0
Q ss_pred HHHHHHHHHHHHhC--CeEEEEcC
Q 022112 94 VGTLTLADVCRDKG--LILINYAT 115 (302)
Q Consensus 94 ~~~~~ll~~~~~~~--~~~v~~SS 115 (302)
...+++.+++.+ .++|++|+
T Consensus 62 --G~el~~~ir~~~~~~pii~lt~ 83 (118)
T d2b4aa1 62 --IFSLLDIVKEQTKQPSVLILTT 83 (118)
T ss_dssp --HHHHHHHHTTSSSCCEEEEEES
T ss_pred --HHHHHHHHHhcCCCCcEEEEEC
Confidence 113566666653 46788875
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=84.80 E-value=0.39 Score=37.83 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeecC
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSGR 47 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~d 47 (302)
+|+|+| +|.+|..++.+|.++|. +|+++..+
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 699999 69999999999999995 68886544
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.79 E-value=0.41 Score=36.37 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC-cEEEeec
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI-DFTYGSG 46 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~~ 46 (302)
+|+|+| +|.-|...+..|.++|+ +|+++..
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~ 32 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEA 32 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEEC
Confidence 699999 69999999999999995 7988543
|
| >d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.68 E-value=0.67 Score=34.56 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=39.1
Q ss_pred cEEEEEcCCcchH------HHHHHHHHhCC---CcEEE--eecCCCChhh-HHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIG------GLLGKLCQAQS---IDFTY--GSGRLENRAS-LEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG------~~l~~~L~~~g---~~V~~--~~~dl~~~~~-~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|||||||=.-|-| ..+++.|.... .+|.. +..+..+... +.+++++.++|.|||+.-..
T Consensus 1 mkILvTGF~pF~~~~~NpS~~vv~~L~~~~~~~~~i~~~~LpV~~~~~~~~l~~l~~~~~pd~vih~G~~~ 71 (208)
T d1iofa_ 1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAP 71 (208)
T ss_dssp CEEEEEEECCCSSCSCCHHHHHHHHHTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECT
T ss_pred CEEEEEeeCCCCCCCCChHHHHHHhcccCCCCCceEEEEecceeHHHHHHHHHHHHHhCCCcEEEEEeecC
Confidence 7999998655443 56777776542 23333 5566655533 66677777999999996533
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.26 E-value=3.5 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=41.3
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEE---------eecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTY---------GSGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~---------~~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
-||+|-|-||..|+.-+++.++.|-+|++ ...++-=.++++++.++.++|+=+-+
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIf 71 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIF 71 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEEC
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEe
Confidence 38999999999999999999999998887 11112123567888887888864433
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=84.23 E-value=0.43 Score=38.72 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=26.8
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
-|+|+| +|+-|..+|..|.+.|++|.++..
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEec
Confidence 388998 899999999999999999999653
|
| >d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Phosphorylase/hydrolase-like superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=84.11 E-value=0.46 Score=35.86 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=39.2
Q ss_pred ccEEEEEcCCcchH------HHHHHHHHhC---CCcEEE--eecCCCCh-hhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYGRTGWIG------GLLGKLCQAQ---SIDFTY--GSGRLENR-ASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGatG~iG------~~l~~~L~~~---g~~V~~--~~~dl~~~-~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
|+||||||=.=|-| ..+++.|... +.+|.. +..+..+. +.+.++++..++|.|+|+.-..
T Consensus 1 MkkILvTGF~PF~~~~~NPS~~iv~~L~~~~~~~~~i~~~~LPV~~~~~~~~l~~~~~~~~pd~vi~~G~a~ 72 (220)
T d1a2za_ 1 MKKVLITGFEPFGGDSKNPTEQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAP 72 (220)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHHTTCEETTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECT
T ss_pred CCEEEEEecCCCCCCCCChHHHHHHHhcccCCCCceEEEEEcceeHHHHHHHHHHHHHhCCceEEEEEeecC
Confidence 56899998766654 6677887754 344444 33333332 2466777778999999986533
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=1.5 Score=29.12 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=43.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
+||||.--.-.+...+...|.+.||+|... .+.++..+.+++..+|.|+-=....
T Consensus 2 ~rILiVDDd~~~~~~l~~~L~~~g~~v~~a----~~~~~a~~~~~~~~~dliilD~~mp 56 (120)
T d1zgza1 2 HHIVIVEDEPVTQARLQSYFTQEGYTVSVT----ASGAGLREIMQNQSVDLILLDINLP 56 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEE----SSHHHHHHHHHHSCCSEEEEESCCS
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEE----CCHHHHHHHHHhcCCCEEeeehhhc
Confidence 589999999999999999999999998753 3456666777778999998654443
|
| >d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Gtf glycosyltransferase domain: UDP-glucosyltransferase GtfB species: Amycolatopsis orientalis [TaxId: 31958]
Probab=83.94 E-value=0.83 Score=36.82 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=30.4
Q ss_pred cEEEEEc-CC-cch--HHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEE
Q 022112 15 LKFLIYG-RT-GWI--GGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHV 66 (302)
Q Consensus 15 ~~ilItG-at-G~i--G~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~V 66 (302)
|||||++ || |.+ .-.|++.|.++||+|+.+.. ....+.+++.+++.+
T Consensus 1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~-----~~~~~~v~~~g~~~~ 51 (401)
T d1iira_ 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP-----PDCAERLAEVGVPHV 51 (401)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC-----GGGHHHHHHTTCCEE
T ss_pred CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC-----cchHHHHHHcCCeEE
Confidence 7888884 33 333 55688999999999998652 223344554455543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=83.87 E-value=2.6 Score=29.54 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=32.5
Q ss_pred ccEEEEEcCCcchHHH-HHHHHHhC-CCcEEEee-cCCCCh------------hhHHHHHhhcCCCEEEEcc
Q 022112 14 PLKFLIYGRTGWIGGL-LGKLCQAQ-SIDFTYGS-GRLENR------------ASLEADIAAVKPTHVFNAA 70 (302)
Q Consensus 14 ~~~ilItGatG~iG~~-l~~~L~~~-g~~V~~~~-~dl~~~------------~~~~~~~~~~~~d~Vi~~a 70 (302)
+|||.|+| +|.+|.. ....|... +.+++++. .+.... +.+++.+. ++|+|+-+.
T Consensus 1 Kiri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~D~V~I~t 69 (164)
T d1tlta1 1 KLRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHS 69 (164)
T ss_dssp CEEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhh--hcccccccc
Confidence 36899999 7999975 56666654 56666532 221111 12344444 789887553
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=83.78 E-value=0.23 Score=35.02 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=18.2
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeecC
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR 47 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~d 47 (302)
|-++| +|.+|+++++.|.+.++.+.+..++
T Consensus 2 IgfIG-~G~mg~~l~~~L~~~~~~~~v~~R~ 31 (153)
T d2i76a2 2 LNFVG-TGTLTRFFLECLKDRYEIGYILSRS 31 (153)
T ss_dssp CEEES-CCHHHHHHHHTTC----CCCEECSS
T ss_pred EEEEe-CcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 34666 8999999999886644433444443
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=83.67 E-value=0.43 Score=37.06 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=26.5
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|+|+| +|..|..++.+|.++|++|+++..
T Consensus 6 vvIIG-aGi~Gls~A~~La~~G~~V~viE~ 34 (281)
T d2gf3a1 6 VIVVG-AGSMGMAAGYQLAKQGVKTLLVDA 34 (281)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCcEEEEeC
Confidence 89998 799999999999999999999654
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=83.32 E-value=0.42 Score=38.16 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.0
Q ss_pred cEEEEEcC-C-cch--HHHHHHHHHhCCCcEEEee
Q 022112 15 LKFLIYGR-T-GWI--GGLLGKLCQAQSIDFTYGS 45 (302)
Q Consensus 15 ~~ilItGa-t-G~i--G~~l~~~L~~~g~~V~~~~ 45 (302)
+||||++| | |.+ ...|+++|.++||+|..+.
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~ 35 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLG 35 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 47888763 3 333 3348899999999998753
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=82.95 E-value=1.2 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=34.7
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHh
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIA 59 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~ 59 (302)
|||.|=| =|-||+.+.+.|.+++.+|+++. |+.+.+.+...++
T Consensus 1 ikigING-fGRIGR~~~R~l~~~~i~iv~IN-d~~~~~~~ayLl~ 43 (168)
T d2g82a1 1 MKVGING-FGRIGRQVFRILHSRGVEVALIN-DLTDNKTLAHLLK 43 (168)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEE-CSSCHHHHHHHHH
T ss_pred CEEEEEC-CcHHHHHHHHHHhcCCCEEEEEC-CCcchhhhhheee
Confidence 6899988 79999999999999999988865 5666666665554
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.73 E-value=3.8 Score=27.56 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=41.8
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEE-e--------ecCCCChhhHHHHHhhcCCCEEEEc
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTY-G--------SGRLENRASLEADIAAVKPTHVFNA 69 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~-~--------~~dl~~~~~~~~~~~~~~~d~Vi~~ 69 (302)
+.-||+|-|-||..|+.-+++.++.|-+|++ + ..++-=.+++.++.++.++|+=+-+
T Consensus 14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIf 79 (130)
T d1euca1 14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIY 79 (130)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEEC
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEe
Confidence 3448999999999999999999999999887 1 1112123557777777788864433
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=82.64 E-value=2.6 Score=30.63 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=37.6
Q ss_pred ccEEEEEc-CCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 14 PLKFLIYG-RTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItG-atG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
||||+|+- |++|. ..+++.|.+.|.++.++.-|... ++ +. ++|.||-..|..
T Consensus 1 m~ki~iiD~g~~~~-~~i~r~l~~lg~~~~i~~~d~~~-~~----~~--~~dgiIl~Gg~~ 53 (196)
T d2a9va1 1 MLKIYVVDNGGQWT-HREWRVLRELGVDTKIVPNDIDS-SE----LD--GLDGLVLSGGAP 53 (196)
T ss_dssp CCBEEEEEESCCTT-CHHHHHHHHTTCBCCEEETTSCG-GG----GT--TCSEEEEEEECS
T ss_pred CCEEEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCCH-HH----Hh--cCCcEEEecccc
Confidence 67888884 35554 67889999999998887766532 22 33 789999888765
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=82.51 E-value=2.8 Score=30.36 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=51.4
Q ss_pred ccEEEEEcCC---cc----------hHHHHHHHHHhCCCcEEE--eecCCC----ChhhHHHHHhhc-CCCEEEEccccC
Q 022112 14 PLKFLIYGRT---GW----------IGGLLGKLCQAQSIDFTY--GSGRLE----NRASLEADIAAV-KPTHVFNAAGVT 73 (302)
Q Consensus 14 ~~~ilItGat---G~----------iG~~l~~~L~~~g~~V~~--~~~dl~----~~~~~~~~~~~~-~~d~Vi~~a~~~ 73 (302)
+++|+++|=| |+ -|..|.++|-.++.+|+= +.++-+ +...+...+... .+|+||-+.|..
T Consensus 3 ~~ti~~~GDS~~~g~~~~~~~~~~Gw~~~L~~~l~~~~~~v~N~gi~G~t~~~~~~~~~~~~~~~~~~~~D~vvi~~G~N 82 (208)
T d2o14a2 3 NRTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDKHTFQVRNMASGGQIARGFRNDGQLEAILKYIKPGDYFMLQLGIN 82 (208)
T ss_dssp CCEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCTTTCEEEECCCTTCCHHHHHHSSHHHHHHTTCCTTCEEEEECCTG
T ss_pred CCEEEEEEcccccCcCCCCCCCCCCHHHHHHHHhCCCceEEEeCeechhhhccHhhhhhHHHHHHhcCCCCEEEEEcCCC
Confidence 4578888855 21 134555555455666533 333322 111334444433 458888777755
Q ss_pred CCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEEcCCc
Q 022112 74 GRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGC 117 (302)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~ 117 (302)
+...........+..|+ ..+++.+++.+.++|++++..
T Consensus 83 ---D~~~~~~~~~~~~~~~l---~~li~~~~~~~~~~vl~~~~~ 120 (208)
T d2o14a2 83 ---DTNPKHKESEAEFKEVM---RDMIRQVKAKGADVILSTPQG 120 (208)
T ss_dssp ---GGCGGGCCCHHHHHHHH---HHHHHHHHTTTCEEEEECCCC
T ss_pred ---cccccccccHHHHHHHH---HHHHHHHHhcCCceeeccccc
Confidence 22222222333343443 457788888888888876543
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.46 E-value=1.9 Score=28.71 Aligned_cols=54 Identities=6% Similarity=-0.104 Sum_probs=41.9
Q ss_pred ccEEEEEcCCcchHHHHHHHHHhCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccc
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAG 71 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~ 71 (302)
.|||||.=-.-.+...+.+.|.+.|++|... .+.++..+.+++..+|.|+-=..
T Consensus 1 nirILiVdDd~~~~~~l~~~L~~~g~~v~~a----~~~~~al~~l~~~~~dlillD~~ 54 (122)
T d1kgsa2 1 NVRVLVVEDERDLADLITEALKKEMFTVDVC----YDGEEGMYMALNEPFDVVILDIM 54 (122)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEE----SSHHHHHHHHHHSCCSEEEEESC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEE----cchHHHHHHHHhhCccccccccc
Confidence 3699999999999999999999999998752 34555555666779999885433
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.45 E-value=0.59 Score=33.01 Aligned_cols=29 Identities=31% Similarity=0.211 Sum_probs=24.5
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
||+|+| .|++|-.++..|. ++.+|+++..
T Consensus 2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~ 30 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDK 30 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHT-TTSEEEEECS
T ss_pred eEEEEC-CcHHHHHHHHHHH-cCCCEEEEec
Confidence 799999 6999999999986 4778888654
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.13 E-value=0.65 Score=31.97 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=24.5
Q ss_pred cEEEEEcCCcchHHHHHHHHH----hCCCcEEEeec
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQ----AQSIDFTYGSG 46 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~----~~g~~V~~~~~ 46 (302)
++++|.| .||+|-.++..|. +.|.+|+.+..
T Consensus 38 k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~ 72 (137)
T d1m6ia2 38 KSITIIG-GGFLGSELACALGRKARALGTEVIQLFP 72 (137)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecc
Confidence 4899998 6999999998885 35778877544
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=81.92 E-value=1.7 Score=32.94 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=25.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHh-CCCcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQA-QSIDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~-~g~~V~~ 43 (302)
+.++|+|-| -|-+|+++++.|.+ .|..|++
T Consensus 31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~ 61 (239)
T d1gtma1 31 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVA 61 (239)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHhcCcceee
Confidence 456899998 79999999999975 5888877
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.01 E-value=2.7 Score=31.75 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=25.9
Q ss_pred cccEEEEEcCCcchHHHHHHHHH-hCCCcEEE
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQ-AQSIDFTY 43 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~-~~g~~V~~ 43 (302)
+.++|.|-| .|.+|+++++.|. +.|..|++
T Consensus 30 ~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~ 60 (234)
T d1b26a1 30 KKATVAVQG-FGNVGQFAALLISQELGSKVVA 60 (234)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHhcCCceEE
Confidence 456899998 8999999999996 46998887
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=80.97 E-value=1.1 Score=29.61 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=24.6
Q ss_pred ccEEEEEcCCcchHHHHHHHHHh---CCCcEEEeec
Q 022112 14 PLKFLIYGRTGWIGGLLGKLCQA---QSIDFTYGSG 46 (302)
Q Consensus 14 ~~~ilItGatG~iG~~l~~~L~~---~g~~V~~~~~ 46 (302)
.++++|+| .|++|-.++..|.+ .|.+|+++..
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~ 52 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYR 52 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccccccceecc
Confidence 45899999 69999999976554 4778877543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=80.83 E-value=1.5 Score=33.63 Aligned_cols=31 Identities=10% Similarity=-0.154 Sum_probs=27.7
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
+.+++.|-| .|-+|+++++.|.+.|..|+++
T Consensus 35 ~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvav 65 (255)
T d1bgva1 35 VGKTVALAG-FGNVAWGAAKKLAELGAKAVTL 65 (255)
T ss_dssp TTCEEEECC-SSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE
Confidence 456899998 7999999999999999998873
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=80.73 E-value=6.4 Score=26.71 Aligned_cols=58 Identities=5% Similarity=-0.036 Sum_probs=40.7
Q ss_pred cEEEEE--cCCcc-hHHHHHHHHH-hCCCcEEEeecCCCChhhHHHHHhhcCCCEEEEccccC
Q 022112 15 LKFLIY--GRTGW-IGGLLGKLCQ-AQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVT 73 (302)
Q Consensus 15 ~~ilIt--GatG~-iG~~l~~~L~-~~g~~V~~~~~dl~~~~~~~~~~~~~~~d~Vi~~a~~~ 73 (302)
.||+|+ |+... +|..++..++ ..|++|+..-.|.. .+++.+++.+.++|+|.-.+...
T Consensus 4 ~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p-~e~iv~a~~~~~~d~v~lS~~~~ 65 (137)
T d1ccwa_ 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSP-QELFIKAAIETKADAILVSSLYG 65 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTCSEEEEEECSS
T ss_pred CEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccC-HHHHHHHHHhcCCCEEEEeeccc
Confidence 467774 44443 6888887654 58999998777755 56666777777999998665544
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=80.71 E-value=7.3 Score=27.65 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.0
Q ss_pred cEEEEEcCCcchHHHHHHHHHhCC
Q 022112 15 LKFLIYGRTGWIGGLLGKLCQAQS 38 (302)
Q Consensus 15 ~~ilItGatG~iG~~l~~~L~~~g 38 (302)
|||.|=| =|-||+.+.+.+++++
T Consensus 2 ikigING-fGRIGR~v~R~~~~~~ 24 (173)
T d1obfo1 2 IRVAING-YGRIGRNILRAHYEGG 24 (173)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHTT
T ss_pred eEEEEEC-CcHHHHHHHHHHHhCC
Confidence 6899998 8999999999998753
|
| >d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Biotin carboxylase (BC), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=5.4 Score=26.17 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=26.5
Q ss_pred cccEEEEEcCCcchHHHHHHHHHhCCCcEEEe
Q 022112 13 KPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYG 44 (302)
Q Consensus 13 ~~~~ilItGatG~iG~~l~~~L~~~g~~V~~~ 44 (302)
|.+|+||-- -|-|...+++.+.+.|.+.+++
T Consensus 1 m~~kvLIAN-RGeiA~Ri~ra~~elgi~tvav 31 (114)
T d2j9ga2 1 MLDKIVIAN-RGEIALRILRACKELGIKTVAV 31 (114)
T ss_dssp CCSEEEECC-CHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCceeeEec-CCHHHHHHHHHHHHhCCceEEE
Confidence 456899986 8999999999999999987763
|
| >d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.33 E-value=3.5 Score=30.16 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=53.2
Q ss_pred EEEEEcCCcchHHHHHHHHHhCCC---cEEEeecCCC------------------------------------ChhhHHH
Q 022112 16 KFLIYGRTGWIGGLLGKLCQAQSI---DFTYGSGRLE------------------------------------NRASLEA 56 (302)
Q Consensus 16 ~ilItGatG~iG~~l~~~L~~~g~---~V~~~~~dl~------------------------------------~~~~~~~ 56 (302)
+|.|+| -|.-|.+++..|.+.+. +.+++..|.. +.+.+.+
T Consensus 3 ~IkViG-vGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I~~ 81 (198)
T d1ofua1 3 VIKVIG-VGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISE 81 (198)
T ss_dssp CEEEEE-EHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHHHH
T ss_pred eEEEEE-ECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHHHHHHH
Confidence 577887 67799999999998874 3444333311 2234556
Q ss_pred HHhhcCCCEEEEccccCCCCCcchhhhhHHHHHHHhHHHHHHHHHHHHHhCCeEEEE
Q 022112 57 DIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINY 113 (302)
Q Consensus 57 ~~~~~~~d~Vi~~a~~~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 113 (302)
.++ +.|.||-+||+.+ . +-..++.-+++.|++.++..|-+
T Consensus 82 ~l~--~~d~vfi~AGlGG------G---------TGtgaapviA~~ake~g~lvvai 121 (198)
T d1ofua1 82 VLE--GADMVFITTGMGG------G---------TGTGAAPIIAEVAKEMGILTVAV 121 (198)
T ss_dssp HHT--TCSEEEEEEETTS------S---------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HhC--CCCeEEEEecCCC------C---------ccccHHHHHHHHHHHcCCCEEEE
Confidence 666 8999999999884 1 11133345889999988754443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.02 E-value=0.81 Score=36.35 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=26.2
Q ss_pred EEEEcCCcchHHHHHHHHHhCCCcEEEeec
Q 022112 17 FLIYGRTGWIGGLLGKLCQAQSIDFTYGSG 46 (302)
Q Consensus 17 ilItGatG~iG~~l~~~L~~~g~~V~~~~~ 46 (302)
|+|+| +|.-|...+..|.++|++|+++..
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~ 30 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEA 30 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEec
Confidence 78998 799999999999999999999653
|