Citrus Sinensis ID: 022113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
Protein Sequence
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEccEEccccHHHHHHHHHHccccEEEEEEEEccccccEEEEEEccccEEEEEEEccccccccEEEEEEEEEcHHHHHHccccccccccccHHHHHHcccEEEEEcccEEcccccHHHHHHHHHHHHHHHccccccccccccEEEccEEEccccEEccccEEccccEEccccEEccccEEcccEEccccEEccccEEEccEEEcccEEccccEEEccEEEccccEEcccEEEcccEEccccEEccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHHHHcccccccEEEEEccEEccccHHHHHHHHHHcccEEEEEEEEcccccccEEEEEccccccEEEEEEccccccccEEccEEEEEcHHHHHHcccccccHHHHHHHHHHHcccEEEEEEccEEEccccHHHHHHHHHHHHHHHHcccccccccccEEEccEEEccccEEccccEEcccEEEcccEEEcccEEEEEEEEEccEEEcccEEEEEEEEEcccEEccEEEEEEEEEEcccEEEccEEEEcccEEccccEEccccccccEcc
Coil and Loop (DISEMBL)
MLNFLKEFEAKLGIKIIcsqeteplgtagplALARdkliddtgepffvlnsdviseypfaEMIEFHkahggeasimvtkvdepskyGVVVMEESTgkvekfvekpklfvgnkinagiyllnpavldrielrptsiekevfpkiaLEGKLFAMVLpgfwmdigqprdyITGLRLYLDSLRKKSSLKLATGANIVGNVLVHesaqigegcligpdvavgpgcvvesgvrlsrcTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDeiysnggvvlphkeikssilkpeivm
Flexible Loop (DISEMBL)
MLNFLKEFEAKLGIKiicsqeteplgTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKhacisssiigwhstVGQWARVENMTILGEDVHVCDEIYsnggvvlphkeikssilkpeivm
Low Complexity Region (SEG)
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGlrlyldslrkksslklATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered region (IsUnstruct)
***FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI***********
Disordered Region (DISOPRED)
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISEMBL)
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Disordered Region (DISPRO)
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	302	2.2.26 [Sep-21-2011]
Q6Z9A3	361	Probable mannose-1-phosph	yes	no	1.0	0.836	0.880	1e-159
Q84JH5	361	Probable mannose-1-phosph	no	no	1.0	0.836	0.877	1e-158
Q941T9	361	Probable mannose-1-phosph	yes	no	1.0	0.836	0.880	1e-158
O22287	361	Mannose-1-phosphate guany	yes	no	1.0	0.836	0.884	1e-157
Q9M2S0	364	Probable mannose-1-phosph	no	no	1.0	0.829	0.827	1e-147
Q8H1Q7	331	Probable mannose-1-phosph	no	no	0.956	0.873	0.754	1e-126
Q54K39	359	Mannose-1-phosphate guany	yes	no	0.993	0.835	0.599	1e-108
Q9Y5P6	360	Mannose-1-phosphate guany	yes	no	0.983	0.825	0.617	1e-108
Q68EQ1	360	Mannose-1-phosphate guany	yes	no	0.983	0.825	0.604	1e-108
Q68EY9	360	Mannose-1-phosphate guany	N/A	no	0.983	0.825	0.604	1e-107

>sp|Q6Z9A3|GMPP3_ORYSJ Probable mannose-1-phosphate guanylyltransferase 3 OS=Oryza sativa subsp. japonica GN=Os08g0237200 PE=2 SV=1

 Score =  561 bits (1446), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 266/302 (88%), Positives = 291/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFA
Sbjct: 60  MLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFA 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           E+I+FHK HGGEA+IMVTKVDEPSKYGVVVMEE+TG VEKFVEKPK+FVGNKINAGIYLL
Sbjct: 120 ELIKFHKNHGGEATIMVTKVDEPSKYGVVVMEEATGMVEKFVEKPKIFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIEL+PTSIEKEVFP+I+ + KLFAMVLPGFWMD+GQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELKPTSIEKEVFPRISADAKLFAMVLPGFWMDVGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           +S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGVRIK
Sbjct: 240 RSANRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGV+LPHKEIKSSILKPEI
Sbjct: 300 KHACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVILPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 3

>sp|Q84JH5|GMPP1_ORYSJ Probable mannose-1-phosphate guanylyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0268400 PE=2 SV=1

 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/302 (87%), Positives = 289/302 (95%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE+KLGIKI CSQETEPLGTAGPLALARDKL D +G+PFFVLNSDVISEYPFA
Sbjct: 60  MLNFLKDFESKLGIKITCSQETEPLGTAGPLALARDKLADGSGDPFFVLNSDVISEYPFA 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           E+I+FHK+HGGEA+IMVTKVDEPSKYGVVVME+ T KVE+FVEKPK+FVGNKINAGIYLL
Sbjct: 120 ELIQFHKSHGGEATIMVTKVDEPSKYGVVVMEDETDKVERFVEKPKVFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIEL+PTSIEKEVFP+IA +  LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELKPTSIEKEVFPRIAADNGLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           K+  KLA+GA+++GNVLVHE+A IGEGCLIGPDVAVGPGCVVE+GVRLSRCTVMRG R+K
Sbjct: 240 KAPAKLASGAHVLGNVLVHETAVIGEGCLIGPDVAVGPGCVVEAGVRLSRCTVMRGARVK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVG WARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGMWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q941T9|GMPP2_ORYSJ Probable mannose-1-phosphate guanylyltransferase 2 OS=Oryza sativa subsp. japonica GN=Os01g0847200 PE=2 SV=1

 Score =  558 bits (1439), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 266/302 (88%), Positives = 290/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYPFA
Sbjct: 60  MLNFLKDFEDKLGITITCSQETEPLGTAGPLALARDKLVDGSGEPFFVLNSDVISEYPFA 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           E+I+FHK+HGGEA+IMVTKVDEPSKYGVVVMEE TG VEKFVEKPK+FVGNKINAGIYLL
Sbjct: 120 ELIKFHKSHGGEATIMVTKVDEPSKYGVVVMEEVTGMVEKFVEKPKIFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIEL+PTSIEKEVFP+IA + KLFA+VLPGFWMD+GQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELKPTSIEKEVFPRIASDAKLFALVLPGFWMDVGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           +S+ +LATGA+IVGNVLVHESA+IGEGCLIGPDVA+GPGCVVE GVRLSRCTVMRGV IK
Sbjct: 240 RSTNRLATGAHIVGNVLVHESAKIGEGCLIGPDVAIGPGCVVEDGVRLSRCTVMRGVHIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACIS+SIIGWHSTVGQWAR+ENMTILGEDVHV DE+Y+NGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISNSIIGWHSTVGQWARIENMTILGEDVHVGDEVYTNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|O22287|GMPP1_ARATH Mannose-1-phosphate guanylyltransferase 1 OS=Arabidopsis thaliana GN=CYT1 PE=1 SV=1

 Score =  555 bits (1429), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/302 (88%), Positives = 284/302 (94%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  
Sbjct: 60  MLNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EM+EFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLL
Sbjct: 120 EMLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KS  KL +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIK
Sbjct: 240 KSPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants. Plays an essential role in plant growth and development and cell-wall architecture. Provides GDP-mannose, used for cell wall carbohydrate biosynthesis, protein N-glycosylation, as well as for the biosynthesis of the antioxidant ascorbate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9M2S0|GMPP2_ARATH Probable mannose-1-phosphate guanylyltransferase 2 OS=Arabidopsis thaliana GN=At3g55590 PE=2 SV=1

 Score =  521 bits (1342), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/302 (82%), Positives = 278/302 (92%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           M  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP  
Sbjct: 63  MSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLE 122

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMI FH AHGGEASIMVTKVDEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIYLL
Sbjct: 123 EMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLL 182

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 183 NPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRK 242

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KS  KLATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV +K
Sbjct: 243 KSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVK 302

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           ++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP+I
Sbjct: 303 RYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDI 362

Query: 301 VM 302
           VM
Sbjct: 363 VM 364

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q8H1Q7|GMPP3_ARATH Probable mannose-1-phosphate guanylyltransferase 3 OS=Arabidopsis thaliana GN=At4g30570 PE=2 SV=1

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/289 (75%), Positives = 252/289 (87%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNF+KE+E KL IKI  SQETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  
Sbjct: 41  MLNFVKEYEKKLEIKITFSQETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLL 100

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK +  EASIMVT+VD+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL
Sbjct: 101 EMIEFHKTNRAEASIMVTEVDDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLL 160

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           +P+VLDRIELR TSIEKE+FPKIA E KL+AMVLPGFWMDIGQP+DYITG R+YL+SLR+
Sbjct: 161 SPSVLDRIELRRTSIEKEIFPKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLRE 220

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           K+  +LATG NI+GNVLVHESA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK
Sbjct: 221 KTPQELATGDNIIGNVLVHESAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIK 280

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289
           +HACIS+SI+GW STVG+WARV N+T+LG+DV+V D    N GVV+  +
Sbjct: 281 EHACISNSIVGWDSTVGRWARVFNITVLGKDVNVADAEVYNSGVVIEEQ 329

Catalyzes a reaction of the Smirnoff-Wheeler pathway, the major route to ascorbate biosynthesis in plants.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q54K39|GMPPB_DICDI Mannose-1-phosphate guanyltransferase beta OS=Dictyostelium discoideum GN=gmppB PE=2 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/302 (59%), Positives = 239/302 (79%), Gaps = 2/302 (0%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           M  +L+ +E KLGIKI  S ET PLGTAGPLALARD L D  GEPFFVLNSD+I ++PFA
Sbjct: 60  MSQYLEPYEKKLGIKISYSHETVPLGTAGPLALARDLLND--GEPFFVLNSDIICDFPFA 117

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           +++ FHK+HGGE +IMVTKV+EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ 
Sbjct: 118 DLLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIF 177

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G+ LYL+SL+ 
Sbjct: 178 NPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKS 237

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           K    LATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I 
Sbjct: 238 KQPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIG 297

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           K++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI
Sbjct: 298 KNSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEI 357

Query: 301 VM 302
           +M
Sbjct: 358 IM 359

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q9Y5P6|GMPPB_HUMAN Mannose-1-phosphate guanyltransferase beta OS=Homo sapiens GN=GMPPB PE=1 SV=2

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/298 (61%), Positives = 236/298 (79%), Gaps = 1/298 (0%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
           +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct: 64  MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQAMVQ 122

Query: 65  FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
           FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+PAV
Sbjct: 123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAV 182

Query: 125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSL 184
           L RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG+ L+L SLR+K   
Sbjct: 183 LQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKQPE 242

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
           +L +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ H+ 
Sbjct: 243 RLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRSHSW 302

Query: 245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
           + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct: 303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EQ1|GMPPB_XENTR Mannose-1-phosphate guanyltransferase beta OS=Xenopus tropicalis GN=gmppb PE=2 SV=1

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/298 (60%), Positives = 236/298 (79%), Gaps = 1/298 (0%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
           +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  +PFFVLNSDVI ++PF EM+ 
Sbjct: 64  MKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSDPFFVLNSDVICDFPFEEMVR 122

Query: 65  FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
           FHK HG E +I+VTKV+EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +PAV
Sbjct: 123 FHKHHGKEGTIVVTKVEEPSKYGVVVYEAESGQIQRFVEKPQVFVSNKINSGLYIFSPAV 182

Query: 125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSL 184
           LDRI+LRPTSIEKE+FP +A EG+LFAM L GFWMDIGQP+D++TG+ +YL S+R+K   
Sbjct: 183 LDRIQLRPTSIEKEIFPAMAQEGQLFAMELQGFWMDIGQPKDFLTGMCMYLQSVRQKHPE 242

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
            L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCT+M+G R+  H+ 
Sbjct: 243 WLHVGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTIMKGSRLHSHSW 302

Query: 245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
           + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct: 303 LESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRIIM 360

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

>sp|Q68EY9|GMPBA_XENLA Mannose-1-phosphate guanyltransferase beta-A OS=Xenopus laevis GN=gmppb-a PE=2 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/298 (60%), Positives = 236/298 (79%), Gaps = 1/298 (0%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
           +KE E +LGI+I  S E EPLGTAGPLALAR+ L+ +  EPFFVLNSDVI ++PF +M+ 
Sbjct: 64  MKEQEKRLGIRISMSHEKEPLGTAGPLALARE-LLTENSEPFFVLNSDVICDFPFEDMVR 122

Query: 65  FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
           FHK HG E +I+VTKV+EPSKYGVVV E  +G++++FVEKP++FV NKIN+G+Y+ +PAV
Sbjct: 123 FHKHHGKEGTIVVTKVEEPSKYGVVVYETESGQIQRFVEKPQVFVSNKINSGLYIFSPAV 182

Query: 125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSL 184
           LDRI+LRPTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG+ +YL S+R+K   
Sbjct: 183 LDRIQLRPTSIEKEIFPAMAQEGQLYAMELQGFWMDIGQPKDFLTGMCMYLQSVRQKHPE 242

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
            L  G   +GNVLV  +A+IG+ C IGP+V +GPG  VE GVR+ RCTVM+G R+  H+ 
Sbjct: 243 WLHAGPGFIGNVLVDPTAKIGQNCSIGPNVTIGPGVTVEDGVRIKRCTVMKGSRLHSHSW 302

Query: 245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
           + SSI+GW S+VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct: 303 LESSIVGWSSSVGQWVRMENVTVLGEDVIVNDELYLNGANVLPHKCISESVPEPRIIM 360

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
319739577	361	putative GDP-mannose pyrophosphorylase [	1.0	0.836	0.986	1e-172
225449380	361	PREDICTED: mannose-1-phosphate guanylylt	1.0	0.836	0.937	1e-164
388518711	353	unknown [Lotus japonicus]	1.0	0.855	0.927	1e-163
224038262	361	GDP-D-mannose pyrophosphorylase [Actinid	1.0	0.836	0.927	1e-162
357492373	361	Mannose-1-phosphate guanyltransferase [M	1.0	0.836	0.913	1e-162
240851533	333	GDP-D-mannose pyrophosphorylase [Malus x	1.0	0.906	0.920	1e-162
113952525	361	GDP-D-mannose pyrophosphorylase [Viola b	1.0	0.836	0.923	1e-162
218117841	361	GDP-D-mannose pyrophosphorylase [Prunus	1.0	0.836	0.917	1e-161
255566484	361	mannose-1-phosphate guanyltransferase, p	1.0	0.836	0.907	1e-161
80973464	361	GDP-mannose pyrophosphorylase [Malpighia	1.0	0.836	0.900	1e-160

>gi|319739577|gb|ADV59923.1| putative GDP-mannose pyrophosphorylase [Citrus unshiu]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/302 (98%), Positives = 299/302 (99%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA
Sbjct: 60  MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL
Sbjct: 120 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLATGANIVGNVLVHESAQIGE CLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 KSSFKLATGANIVGNVLVHESAQIGEECLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449380|ref|XP_002282422.1| PREDICTED: mannose-1-phosphate guanylyltransferase 1 isoform 1 [Vitis vinifera]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 283/302 (93%), Positives = 294/302 (97%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF 
Sbjct: 60  MLNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEES G+V++FVEKPKLFVGNKINAGIYLL
Sbjct: 120 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESIGRVDRFVEKPKLFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLA+GA+IVGNVLV ESA+IGEGCLIGPDVA+GPGCVVE+GVRLSRCTVMRGVRIK
Sbjct: 240 KSSSKLASGAHIVGNVLVDESAKIGEGCLIGPDVAIGPGCVVEAGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518711|gb|AFK47417.1| unknown [Lotus japonicus]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/302 (92%), Positives = 294/302 (97%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FEAKLGIKI CSQETEPLGTAGPLALARDKLID +GEPFFVLNSDVISEYP  
Sbjct: 52  MLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDGSGEPFFVLNSDVISEYPLE 111

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKLFVGNKINAGIYLL
Sbjct: 112 EMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKFVEKPKLFVGNKINAGIYLL 171

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKEVFPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 172 NPSVLDRIELRPTSIEKEVFPKIAAEQKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 231

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLA+G+NIVGNV+V E+A+IGEGCLIGPDVA+GPGC+VESGVRLSRCT+MRGVRIK
Sbjct: 232 KSSSKLASGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTIMRGVRIK 291

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI
Sbjct: 292 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 351

Query: 301 VM 302
           VM
Sbjct: 352 VM 353

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224038262|gb|ACN38266.1| GDP-D-mannose pyrophosphorylase [Actinidia latifolia]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/302 (92%), Positives = 291/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KLGIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYP  
Sbjct: 60  MLNFLKDFETKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKLFVGNKINAGIYLL
Sbjct: 120 EMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGQVEKFVEKPKLFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELRPTSIEKEIFPKIAGEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           K+S KLATG +IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 KTSSKLATGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV LPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVALPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Actinidia latifolia

Species: Actinidia latifolia

Genus: Actinidia

Family: Actinidiaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492373|ref|XP_003616475.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula] gi|49246467|gb|AAT58365.1| GMPase [Medicago sativa] gi|355517810|gb|AES99433.1| Mannose-1-phosphate guanyltransferase [Medicago truncatula]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 276/302 (91%), Positives = 293/302 (97%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FEAKLGI I CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVIS+YP  
Sbjct: 60  MLNFLKDFEAKLGITISCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISDYPLK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK+HGGEASIMVTKVDEPSKYGVVVMEE+TG+VEKFVEKPKLFVGNKINAGIYLL
Sbjct: 120 EMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVEKFVEKPKLFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKE+FPKIA E KL+AMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLA G+NIVGNV+V E+A+IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIK
Sbjct: 240 KSSSKLAGGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK++ILKPEI
Sbjct: 300 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240851533|gb|ACN88684.2| GDP-D-mannose pyrophosphorylase [Malus x domestica]

 Score =  575 bits (1483), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/302 (92%), Positives = 290/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           M+ FLKEFE K+GIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF 
Sbjct: 32  MMTFLKEFEEKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFK 91

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKV+KFVEKPKLFVGNKINAGIYLL
Sbjct: 92  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLL 151

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLD+IELRPTSIEKEVFPKIA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 152 NPSVLDKIELRPTSIEKEVFPKIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 211

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
            SS KLA GA+IVGNVLV E+A+IGEGCLIGPDVA+GPGC++ESGVRLSRCTVMRGVRIK
Sbjct: 212 NSSSKLARGAHIVGNVLVDETAKIGEGCLIGPDVAIGPGCIIESGVRLSRCTVMRGVRIK 271

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
            HACISSSIIGWHSTVGQWARVENMTILGEDVHV DEIYSNGGVVLPHKEIKSSILKPEI
Sbjct: 272 NHACISSSIIGWHSTVGQWARVENMTILGEDVHVSDEIYSNGGVVLPHKEIKSSILKPEI 331

Query: 301 VM 302
           VM
Sbjct: 332 VM 333

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113952525|gb|ABI48955.1| GDP-D-mannose pyrophosphorylase [Viola baoshanensis]

 Score =  575 bits (1482), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/302 (92%), Positives = 290/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KLGI I CSQETEPLGTAGPLALARDKL  D+GEPFFVLNSDVISEYPF 
Sbjct: 60  MLNFLKQFETKLGITITCSQETEPLGTAGPLALARDKLTGDSGEPFFVLNSDVISEYPFK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTGKV+KFVEKPK+FVGNKINAGIYLL
Sbjct: 120 EMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVDKFVEKPKIFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLD IELRPTSIEKEVFPKIA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDLIELRPTSIEKEVFPKIAAEKKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLATGA+IVGNVLV E+A IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 KSSPKLATGASIVGNVLVDETATIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSI+GWHSTVGQWARVENMTILGEDVHVCDE+YSNGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIVGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Viola baoshanensis

Species: Viola baoshanensis

Genus: Viola

Family: Violaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218117841|dbj|BAH03298.1| GDP-D-mannose pyrophosphorylase [Prunus persica]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/302 (91%), Positives = 289/302 (95%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           M+ FLKEFE K+GIKI CSQETEPLGTAGPLALARDKLIDD+GEPFFVLNSDVISEYPF 
Sbjct: 60  MMTFLKEFETKVGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPFK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           +MIEFHK+HGGEASIMVTKVDEPSKYGVVVMEESTGKV+KFVEKPKLFVGNKINAGIYLL
Sbjct: 120 QMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGKVQKFVEKPKLFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKEVFP IA E KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELRPTSIEKEVFPNIAAENKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
            SS KLA G+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 NSSSKLARGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACIS SIIGWHSTVGQWARVENMTILGEDVHV DEIYSNGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISGSIIGWHSTVGQWARVENMTILGEDVHVSDEIYSNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566484|ref|XP_002524227.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis] gi|223536504|gb|EEF38151.1| mannose-1-phosphate guanyltransferase, putative [Ricinus communis]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/302 (90%), Positives = 292/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLKEFEAKLGI I CSQETEPLGTAGPLALARDKLID++G+PFFVLNSDVISEYP  
Sbjct: 60  MLNFLKEFEAKLGITITCSQETEPLGTAGPLALARDKLIDESGDPFFVLNSDVISEYPLK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE+FVEKPK+FVGNKINAGIYLL
Sbjct: 120 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKIFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIEL+PTSIEKEVFPKIA + +LFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELKPTSIEKEVFPKIAADKQLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS +LA GA++VGNVL+ E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 KSSSRLANGAHVVGNVLIDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHACISSSI+GWHSTVGQW R+ENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI
Sbjct: 300 KHACISSSIVGWHSTVGQWTRIENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|80973464|gb|ABB53473.1| GDP-mannose pyrophosphorylase [Malpighia glabra] gi|161898831|gb|ABX80393.1| GDP-mannose pyrophosphorylase [Malpighia glabra]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/302 (90%), Positives = 291/302 (96%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           MLNFLK+FE KL IKI CSQETEPLGTAGPLALARDKLID++GEPFFVLNSDVISEYP  
Sbjct: 60  MLNFLKDFEKKLDIKITCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISEYPLK 119

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           EMIEFHK HGGEASIMVTKVDEPSKYGVVVMEESTG+VE+FVEKPK+FVGNKINAGIYLL
Sbjct: 120 EMIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGRVERFVEKPKIFVGNKINAGIYLL 179

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 180
           NP+VLDRIELRPTSIEKEVFPKIA +  L+AMVLPGFWMDIGQP+DYITGLRLYLDSLRK
Sbjct: 180 NPSVLDRIELRPTSIEKEVFPKIAADNSLYAMVLPGFWMDIGQPKDYITGLRLYLDSLRK 239

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           KSS KLATG+N+VGNVLV E+A+IGEGCLIGPDVA+GPGCVVESGVRLSRCTVMRGVRIK
Sbjct: 240 KSSTKLATGSNVVGNVLVDETAKIGEGCLIGPDVAIGPGCVVESGVRLSRCTVMRGVRIK 299

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
           KHAC+SSSIIGWHSTVGQWARVENMTILGEDVH+CDE+YSNGGVVLPHKEIKSSI+KPEI
Sbjct: 300 KHACVSSSIIGWHSTVGQWARVENMTILGEDVHLCDEVYSNGGVVLPHKEIKSSIIKPEI 359

Query: 301 VM 302
           VM
Sbjct: 360 VM 361

Source: Malpighia glabra

Species: Malpighia glabra

Genus: Malpighia

Family: Malpighiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	302
TAIR|locus:2005504	361	CYT1 "CYTOKINESIS DEFECTIVE 1"	1.0	0.836	0.837	9.8e-135
TAIR|locus:2100001	364	AT3G55590 [Arabidopsis thalian	1.0	0.829	0.781	6.1e-126
TAIR|locus:2118671	331	AT4G30570 [Arabidopsis thalian	0.943	0.861	0.738	1.4e-110
DICTYBASE|DDB_G0287619	359	gmppB "mannose-1-phosphate gua	0.993	0.835	0.576	9.7e-96
UNIPROTKB|Q9Y5P6	360	GMPPB "Mannose-1-phosphate gua	0.983	0.825	0.593	3.8e-94
UNIPROTKB|F1SPR4	360	GMPPB "Mannose-1-phosphate gua	0.983	0.825	0.590	7.8e-94
UNIPROTKB|F1N7H5	360	GMPPB "Mannose-1-phosphate gua	0.983	0.825	0.593	1e-93
UNIPROTKB|E2R2I6	360	GMPPB "Uncharacterized protein	0.983	0.825	0.587	1.6e-93
MGI|MGI:2660880	360	Gmppb "GDP-mannose pyrophospho	0.983	0.825	0.587	1.6e-93
RGD|1560458	360	Gmppb "GDP-mannose pyrophospho	0.983	0.825	0.583	2.1e-93

TAIR|locus:2005504 CYT1 "CYTOKINESIS DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1320 (469.7 bits), Expect = 9.8e-135, P = 9.8e-135
 Identities = 253/302 (83%), Positives = 270/302 (89%)

Query:     1 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
             MLNFLK+FE KL IKI CSQETEPLGTAGPLALARDKL+D +GEPFFVLNSDVISEYP  
Sbjct:    60 MLNFLKDFETKLEIKITCSQETEPLGTAGPLALARDKLLDGSGEPFFVLNSDVISEYPLK 119

Query:    61 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
             EM+EFHK+HGGEASIMVTKVDEPSKYGVVVMEESTG+VEKFVEKPKL+VGNKINAGIYLL
Sbjct:   120 EMLEFHKSHGGEASIMVTKVDEPSKYGVVVMEESTGRVEKFVEKPKLYVGNKINAGIYLL 179

Query:   121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXX 180
             NP+VLD+IELRPTSIEKE FPKIA    L+AMVLPGFWMDIGQPRDYITG          
Sbjct:   180 NPSVLDKIELRPTSIEKETFPKIAAAQGLYAMVLPGFWMDIGQPRDYITGLRLYLDSLRK 239

Query:   181 XXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
                    +G +IVGNVLV E+A IGEGCLIGPDVA+GPGC+VESGVRLSRCTVMRGVRIK
Sbjct:   240 KSPAKLTSGPHIVGNVLVDETATIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIK 299

Query:   241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
             KHACISSSIIGWHSTVGQWAR+ENMTILGEDVHV DEIYSNGGVVLPHKEIKS+ILKPEI
Sbjct:   300 KHACISSSIIGWHSTVGQWARIENMTILGEDVHVSDEIYSNGGVVLPHKEIKSNILKPEI 359

Query:   301 VM 302
             VM
Sbjct:   360 VM 361

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016779 "nucleotidyltransferase activity" evidence=ISS

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISS;IMP

GO:0019853 "L-ascorbic acid biosynthetic process" evidence=IMP

GO:0030244 "cellulose biosynthetic process" evidence=RCA;IMP

GO:0009408 "response to heat" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IMP

GO:0060359 "response to ammonium ion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2100001 AT3G55590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1237 (440.5 bits), Expect = 6.1e-126, P = 6.1e-126
 Identities = 236/302 (78%), Positives = 264/302 (87%)

Query:     1 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
             M  F  + EA LGIKI CSQETEPLGTAGPLALARDKL+D +G+PFFVLNSDVIS+YP  
Sbjct:    63 MSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLE 122

Query:    61 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
             EMI FH AHGGEASIMVTKVDEPSKYGVVVMEE+TG+VE+FVEKPKLFVGNKINAGIYLL
Sbjct:   123 EMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLL 182

Query:   121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXX 180
             NP+VLDRIELRPTSIEKE+FP+IA   KL+AM+LPGFWMDIGQPRDYITG          
Sbjct:   183 NPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRK 242

Query:   181 XXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
                   ATG +I+GNVLV E+A+IGEGCLIGP+VA+GPGCVVESGVRLS CTVMRGV +K
Sbjct:   243 KSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVK 302

Query:   241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
             ++ACISSSIIGWHSTVGQWARVENM+ILG++V+VCDEIY NGGVVL +KEIKS ILKP+I
Sbjct:   303 RYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDI 362

Query:   301 VM 302
             VM
Sbjct:   363 VM 364

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2118671 AT4G30570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 212/287 (73%), Positives = 241/287 (83%)

Query:     1 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
             MLNF+KE+E KL IKI  SQETEPLGTAGPLALARDKL+D++G+PFFVLNSDVI EYP  
Sbjct:    41 MLNFVKEYEKKLEIKITFSQETEPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLL 100

Query:    61 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
             EMIEFHK +  EASIMVT+VD+PSKYGVVV EE T +VE FVEKPK FVGNKINAGIYLL
Sbjct:   101 EMIEFHKTNRAEASIMVTEVDDPSKYGVVVTEEGTARVESFVEKPKHFVGNKINAGIYLL 160

Query:   121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXX 180
             +P+VLDRIELR TSIEKE+FPKIA E KL+AMVLPGFWMDIGQP+DYITG          
Sbjct:   161 SPSVLDRIELRRTSIEKEIFPKIASEKKLYAMVLPGFWMDIGQPKDYITGQRMYLNSLRE 220

Query:   181 XXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
                   ATG NI+GNVLVHESA IGEGCLIGPDV +GPGCV++SGVRL  CTVMRGV IK
Sbjct:   221 KTPQELATGDNIIGNVLVHESAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIK 280

Query:   241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD-EIYSNGGVVL 286
             +HACIS+SI+GW STVG+WARV N+T+LG+DV+V D E+Y N GVV+
Sbjct:   281 EHACISNSIVGWDSTVGRWARVFNITVLGKDVNVADAEVY-NSGVVI 326

GO:0005737 "cytoplasm" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA;ISS

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

DICTYBASE|DDB_G0287619 gmppB "mannose-1-phosphate guanylyltransferase beta" [Dictyostelium discoideum (taxid:44689)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 174/302 (57%), Positives = 231/302 (76%)

Query:     1 MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
             M  +L+ +E KLGIKI  S ET PLGTAGPLALARD L++D GEPFFVLNSD+I ++PFA
Sbjct:    60 MSQYLEPYEKKLGIKISYSHETVPLGTAGPLALARD-LLND-GEPFFVLNSDIICDFPFA 117

Query:    61 EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
             +++ FHK+HGGE +IMVTKV+EPSKYGVVV +E  G++ KFVEKP+++VGNKINAG+Y+ 
Sbjct:   118 DLLAFHKSHGGEGTIMVTKVEEPSKYGVVVYKEENGQILKFVEKPQVYVGNKINAGVYIF 177

Query:   121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXX 180
             NP +LDRI+ +PTSIEKE+FP +A + +L+ M L GFWMD+GQP+D+++G          
Sbjct:   178 NPTILDRIQPKPTSIEKEIFPAMAADSQLYCMQLEGFWMDVGQPKDFLSGMGLYLNSLKS 237

Query:   181 XXXXXXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
                   ATG  I+G VL+  S+ I  GCLIGP+V +GP CV++ G RL   TV+ G  I 
Sbjct:   238 KQPELLATGNGIIGPVLIDPSSVIEPGCLIGPNVTIGPNCVIQEGTRLVNTTVLEGTTIG 297

Query:   241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 300
             K++ I S+IIGW+S++G+W R+EN ++LGEDVHV DE+Y NGG +LPHK I SSI +PEI
Sbjct:   298 KNSWIKSTIIGWNSSIGKWVRMENTSVLGEDVHVSDELYINGGKILPHKSITSSIPEPEI 357

Query:   301 VM 302
             +M
Sbjct:   358 IM 359

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9Y5P6 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Homo sapiens (taxid:9606)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 177/298 (59%), Positives = 225/298 (75%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+PAV
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKEVFP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LQRIQLQPTSIEKEVFPIMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKQPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R  RI+ H+ 
Sbjct:   243 RLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDARIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009298 "GDP-mannose biosynthetic process" evidence=IEA;TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SPR4 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Sus scrofa (taxid:9823)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 176/298 (59%), Positives = 224/298 (75%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T EPFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDFPFQAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+PAV
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LQRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKQPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ H+ 
Sbjct:   243 QLCSGPGIVGNVLVDPSARIGKNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F1N7H5 GMPPB "Mannose-1-phosphate guanyltransferase beta" [Bos taurus (taxid:9913)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 177/298 (59%), Positives = 224/298 (75%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E KLGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDFPFEAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG+V +FVEKP++FV NKINAG+Y+L+P+V
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINAGVYILSPSV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKHPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  IVGNVLV  SA+IGE C IGP+V++GPG VVE GV + RCTV+R   I+ H+ 
Sbjct:   243 QLCSGPGIVGNVLVDPSARIGENCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0005739 "mitochondrion" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|E2R2I6 GMPPB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 175/298 (58%), Positives = 223/298 (74%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+LNP V
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILNPTV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LRRIQLQPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKQPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ H+ 
Sbjct:   243 QLCSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:2660880 Gmppb "GDP-mannose pyrophosphorylase B" [Mus musculus (taxid:10090)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 175/298 (58%), Positives = 224/298 (75%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+PAV
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKHPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  IVGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ H+ 
Sbjct:   243 RLYSGPGIVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004475 "mannose-1-phosphate guanylyltransferase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

RGD|1560458 Gmppb "GDP-mannose pyrophosphorylase B" [Rattus norvegicus (taxid:10116)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 174/298 (58%), Positives = 224/298 (75%)

Query:     5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
             +K  E +LGI+I  S E EPLGTAGPLALARD L+ +T +PFFVLNSDVI ++PF  M++
Sbjct:    64 MKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDFPFQAMVQ 122

Query:    65 FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             FH+ HG E SI+VTKV+EPSKYGVVV E  TG++ +FVEKP++FV NKINAG+Y+L+PAV
Sbjct:   123 FHRHHGQEGSILVTKVEEPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINAGMYILSPAV 182

Query:   125 LDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXX 184
             L RI+L+PTSIEKE+FP +A EG+L+AM L GFWMDIGQP+D++TG              
Sbjct:   183 LQRIQLKPTSIEKEIFPVMAKEGQLYAMELQGFWMDIGQPKDFLTGMCLFLQSLRQKHPE 242

Query:   185 XXATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
                +G  +VGNVLV  SA+IG+ C IGP+V++GPG VVE GV + RCTV+R   I+ H+ 
Sbjct:   243 RLYSGPGVVGNVLVDPSARIGQNCSIGPNVSLGPGVVVEDGVCIRRCTVLRDAHIRSHSW 302

Query:   245 ISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302
             + S I+GW   VGQW R+EN+T+LGEDV V DE+Y NG  VLPHK I  S+ +P I+M
Sbjct:   303 LESCIVGWRCRVGQWVRMENVTVLGEDVIVNDELYLNGASVLPHKSIGESVPEPRIIM 360

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3QMC8	GMPPB_CAEEL	2, ., 7, ., 7, ., 1, 3	0.5335	0.9602	0.7945	yes	no
Q8H1Q7	GMPP3_ARATH	2, ., 7, ., 7, ., 1, 3	0.7543	0.9569	0.8731	no	no
O74484	MPG1_SCHPO	2, ., 7, ., 7, ., 1, 3	0.5770	0.9966	0.8292	yes	no
Q4I1Y5	MPG1_GIBZE	2, ., 7, ., 7, ., 1, 3	0.5522	0.9966	0.8269	yes	no
Q2YDJ9	GMPPB_BOVIN	2, ., 7, ., 7, ., 1, 3	0.6140	0.9834	0.825	yes	no
Q941T9	GMPP2_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8807	1.0	0.8365	yes	no
O74624	MPG1_HYPJE	2, ., 7, ., 7, ., 1, 3	0.5588	0.9966	0.8269	N/A	no
O93827	MPG1_CANAL	2, ., 7, ., 7, ., 1, 3	0.5197	0.9966	0.8314	N/A	no
Q7RVR8	MPG1_NEUCR	2, ., 7, ., 7, ., 1, 3	0.5765	0.9933	0.8241	N/A	no
Q9P8N0	MPG1_PICAN	2, ., 7, ., 7, ., 1, 3	0.5555	0.9966	0.8269	N/A	no
Q9M2S0	GMPP2_ARATH	2, ., 7, ., 7, ., 1, 3	0.8278	1.0	0.8296	no	no
Q68EQ1	GMPPB_XENTR	2, ., 7, ., 7, ., 1, 3	0.6040	0.9834	0.825	yes	no
Q5B1J4	MPG1_EMENI	2, ., 7, ., 7, ., 1, 3	0.5620	0.9966	0.8269	yes	no
Q6BN12	MPG1_DEBHA	2, ., 7, ., 7, ., 1, 3	0.5065	0.9966	0.8314	yes	no
Q8BTZ7	GMPPB_MOUSE	2, ., 7, ., 7, ., 1, 3	0.6107	0.9834	0.825	yes	no
Q54K39	GMPPB_DICDI	2, ., 7, ., 7, ., 1, 3	0.5993	0.9933	0.8356	yes	no
Q7JZB4	GMPPB_DROME	2, ., 7, ., 7, ., 1, 3	0.5838	0.9801	0.8021	yes	no
Q9Y5P6	GMPPB_HUMAN	2, ., 7, ., 7, ., 1, 3	0.6174	0.9834	0.825	yes	no
P0C5I2	GMPPB_PIG	2, ., 7, ., 7, ., 1, 3	0.6140	0.9834	0.825	yes	no
Q6DBU5	GMPPB_DANRE	2, ., 7, ., 7, ., 1, 3	0.5805	0.9834	0.825	yes	no
Q70SJ2	MPG1_KLULA	2, ., 7, ., 7, ., 1, 3	0.5511	0.9966	0.8337	yes	no
Q6Z9A3	GMPP3_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8807	1.0	0.8365	yes	no
Q9Y725	MPG11_CANGA	2, ., 7, ., 7, ., 1, 3	0.5280	0.9966	0.8337	yes	no
Q6CCU3	MPG1_YARLI	2, ., 7, ., 7, ., 1, 3	0.5620	0.9933	0.8264	yes	no
P0CO20	MPG1_CRYNJ	2, ., 7, ., 7, ., 1, 3	0.5490	0.9966	0.8269	yes	no
P0CO21	MPG1_CRYNB	2, ., 7, ., 7, ., 1, 3	0.5490	0.9966	0.8269	N/A	no
Q2UJU5	MPG1_ASPOR	2, ., 7, ., 7, ., 1, 3	0.5522	0.9966	0.8269	yes	no
Q4U3E8	MPG1_ASPFU	2, ., 7, ., 7, ., 1, 3	0.5555	0.9966	0.8269	yes	no
P41940	MPG1_YEAST	2, ., 7, ., 7, ., 1, 3	0.5676	0.9966	0.8337	yes	no
O22287	GMPP1_ARATH	2, ., 7, ., 7, ., 1, 3	0.8841	1.0	0.8365	yes	no
Q84JH5	GMPP1_ORYSJ	2, ., 7, ., 7, ., 1, 3	0.8774	1.0	0.8365	no	no
Q295Y7	GMPPB_DROPS	2, ., 7, ., 7, ., 1, 3	0.5805	0.9801	0.7978	yes	no
Q68EY9	GMPBA_XENLA	2, ., 7, ., 7, ., 1, 3	0.6040	0.9834	0.825	N/A	no
Q752H4	MPG1_ASHGO	2, ., 7, ., 7, ., 1, 3	0.5346	0.9966	0.8337	yes	no
A2VD83	GMPBB_XENLA	2, ., 7, ., 7, ., 1, 3	0.5939	0.9834	0.825	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.963
3rd Layer	2.7.7.13	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018410001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (361 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036807001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (373 aa)	•					•	•		0.978
	GSVIVG00026780001	SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (249 aa)				•		•	•		0.973
	GSVIVG00015572001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (243 aa)	•			•	•	•	•		0.933
	GSVIVG00031181001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (376 aa)						•	•		0.905
	GSVIVG00014968001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (437 aa)					•	•	•		0.890
	GSVIVG00028703001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (621 aa)	•				•		•		0.858
	GSVIVG00015680001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (80 aa)						•	•		0.848
	GSVIVG00018184001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (522 aa)	•					•	•		0.774
	GSVIVG00017124001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (355 aa)	•						•		0.678
	GSVIVG00000750001	SubName- Full=Chromosome undetermined scaffold_107, whole genome shotgun sequence; (657 aa)	•					•	•		0.629

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	302
cd06425	233	cd06425, M1P_guanylylT_B_like_N, N-terminal domain	1e-116
COG1208	358	COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph	4e-74
cd04181	217	cd04181, NTP_transferase, NTP_transferases catalyz	4e-48
pfam00483	247	pfam00483, NTP_transferase, Nucleotidyl transferas	9e-40
cd06428	257	cd06428, M1P_guanylylT_A_like_N, N-terminal domain	2e-37
TIGR03992	393	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph	3e-36
cd06426	220	cd06426, NTP_transferase_like_2, NTP_trnasferase_l	6e-32
cd06915	223	cd06915, NTP_transferase_WcbM_like, WcbM_like is a	4e-31
cd05824	80	cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate	3e-29
cd06422	221	cd06422, NTP_transferase_like_1, NTP_transferase_l	8e-23
TIGR01208	353	TIGR01208, rmlA_long, glucose-1-phosphate thymidyl	1e-22
cd02524	253	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr	6e-22
cd04189	236	cd04189, G1P_TT_long, G1P_TT_long represents the l	1e-21
COG0448	393	COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb	3e-21
COG1207	460	COG1207, GlmU, N-acetylglucosamine-1-phosphate uri	8e-20
COG1209	286	COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel	8e-18
TIGR02623	254	TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti	1e-17
TIGR01173	451	TIGR01173, glmU, UDP-N-acetylglucosamine diphospho	2e-17
cd03356	79	cd03356, LbH_G1P_AT_C_like, Left-handed parallel b	2e-16
TIGR02091	361	TIGR02091, glgC, glucose-1-phosphate adenylyltrans	4e-15
PRK05293	380	PRK05293, glgC, glucose-1-phosphate adenylyltransf	8e-15
cd02541	267	cd02541, UGPase_prokaryotic, Prokaryotic UGPase ca	8e-13
PRK14354	458	PRK14354, glmU, bifunctional N-acetylglucosamine-1	2e-12
PRK14355	459	PRK14355, glmU, bifunctional N-acetylglucosamine-1	2e-11
cd03353	193	cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosph	5e-11
cd02540	229	cd02540, GT2_GlmU_N_bac, N-terminal domain of bact	5e-11
cd04652	81	cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit,	3e-10
PRK14357	448	PRK14357, glmU, bifunctional N-acetylglucosamine-1	5e-09
cd03352	205	cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyl	2e-08
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	9e-08
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-07
PRK02862	429	PRK02862, glgC, glucose-1-phosphate adenylyltransf	2e-07
PRK14360	450	PRK14360, glmU, bifunctional N-acetylglucosamine-1	2e-07
COG1210	291	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell	3e-07
PRK00844	407	PRK00844, glgC, glucose-1-phosphate adenylyltransf	3e-07
TIGR01099	260	TIGR01099, galU, UTP-glucose-1-phosphate uridylylt	6e-07
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	7e-07
PRK14358	481	PRK14358, glmU, bifunctional N-acetylglucosamine-1	1e-06
cd05636	163	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-pho	2e-06
TIGR01852	254	TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protei	2e-06
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	5e-06
cd02538	240	cd02538, G1P_TT_short, G1P_TT_short is the short f	9e-06
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	1e-05
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	1e-05
PRK00892	343	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] gluco	2e-05
PRK05289	262	PRK05289, PRK05289, UDP-N-acetylglucosamine acyltr	3e-05
COG1044	338	COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]	3e-05
cd02507	216	cd02507, eIF-2B_gamma_N_like, The N-terminal of eI	7e-05
TIGR01853	324	TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristo	1e-04
cd04645	153	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydra	1e-04
cd03360	197	cd03360, LbH_AT_putative, Putative Acyltransferase	3e-04
cd03351	254	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamin	4e-04
PRK14352	482	PRK14352, glmU, bifunctional N-acetylglucosamine-1	5e-04
PLN02241	436	PLN02241, PLN02241, glucose-1-phosphate adenylyltr	5e-04
PRK14353	446	PRK14353, glmU, bifunctional N-acetylglucosamine-1	0.001
cd03358	119	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed p	0.001
cd04651	104	cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenyly	0.001
PRK14356	456	PRK14356, glmU, bifunctional N-acetylglucosamine-1	0.002
COG1043	260	COG1043, LpxA, Acyl-[acyl carrier protein]	0.002
PRK12461	255	PRK12461, PRK12461, UDP-N-acetylglucosamine acyltr	0.002
PRK14359	430	PRK14359, glmU, bifunctional N-acetylglucosamine-1	0.002
TIGR03570	193	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sia	0.002
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.003
pfam00132	36	pfam00132, Hexapep, Bacterial transferase hexapept	0.003
PRK00725	425	PRK00725, glgC, glucose-1-phosphate adenylyltransf	0.003
cd02523	229	cd02523, PC_cytidylyltransferase, Phosphocholine c	0.003

>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

 Score =  332 bits (854), Expect = e-116
 Identities = 127/175 (72%), Positives = 154/175 (88%), Gaps = 1/175 (0%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           M+ FLKE+E KLGIKI  S ETEPLGTAGPLALARD L DD  EPFFVLNSDVI ++P A
Sbjct: 60  MVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLA 118

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLL 120
           E+++FHK HG E +I+VTKV++PSKYGVVV +E+TG++E+FVEKPK+FVGNKINAGIY+L
Sbjct: 119 ELLDFHKKHGAEGTILVTKVEDPSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYIL 178

Query: 121 NPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 175
           NP+VLDRI LRPTSIEKE+FPK+A EG+L+A  LPGFWMDIGQP+D++ G+ LYL
Sbjct: 179 NPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 233

>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

 Score =  231 bits (591), Expect = 4e-74
 Identities = 101/289 (34%), Positives = 149/289 (51%), Gaps = 20/289 (6%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
            LG++I    E EPLGTAG L  A D L  D    F VLN DV+++   +E++EFHK  G
Sbjct: 70  GLGVRITYVVEKEPLGTAGALKNALDLLGGD---DFLVLNGDVLTDLDLSELLEFHKKKG 126

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRI 128
             A+I +T+V +PS++GVV  ++  G+V +F EKP       N INAGIY+ +P V D I
Sbjct: 127 ALATIALTRVLDPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYI 186

Query: 129 EL-RPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYITGLRLYLDSL------RK 180
           E       E+E+ P +A +G  ++  V  G+W+DIG P D +    L L           
Sbjct: 187 EKGERFDFEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPI 246

Query: 181 KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIK 240
           +  + +   A I+G V++   A+IG G LIGP   +G G  + +GV +    +M  V I 
Sbjct: 247 EEPVVIIRSAYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIG 306

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289
             + I  SIIG +  +G      ++ I   DV +        GVV+   
Sbjct: 307 HGSYIGDSIIGENCKIGA-----SLIIG--DVVIGINSEILPGVVVGPG 348

Length = 358

>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

 Score =  159 bits (405), Expect = 4e-48
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 7/157 (4%)

Query: 9   EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKA 68
            +K G+ I    + EPLGTAG +  A D L DD    F V+N DV+++   +E++ FH+ 
Sbjct: 65  GSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDD---DFLVVNGDVLTDLDLSELLRFHRE 121

Query: 69  HGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI 128
            G +A+I V +V++PS+YGVV +++  G+V +FVEKP L   N  NAGIY+  P +LD I
Sbjct: 122 KGADATIAVKEVEDPSRYGVVELDDD-GRVTRFVEKPTLPESNLANAGIYIFEPEILDYI 180

Query: 129 ELRPTS---IEKEVFPKIALEGKLFAMVLPGFWMDIG 162
                       +  P +  EGK++   + G+W+DIG
Sbjct: 181 PEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Length = 217

>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase

 Score =  138 bits (351), Expect = 9e-40
 Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 13/189 (6%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
           ++       +K G+++  + + EP GTA  +ALA D L DD  E   VL  D I    F 
Sbjct: 60  LVAEQLGDGSKFGLQVTYALQPEPRGTAPAVALAADFLGDDDPELVLVLGGDHIYRMDFE 119

Query: 61  EMIEFHKAHG--GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-NKINAGI 117
           E ++  +A    G  +  +  V++P+ YGV+  +E  G+V +FVEKP L    N  + GI
Sbjct: 120 EAVQKARAKAADGTVTFGIVPVEDPTGYGVIEFDE-NGRVIRFVEKPDLPKASNYASMGI 178

Query: 118 YLLNPAVLDRI-----EL-RPTSIEKEVFPKIALEGKLF-AMVLPGF--WMDIGQPRDYI 168
           Y  N  V   +     EL R      +  P    +G L  A +  G+  W D+G      
Sbjct: 179 YFFNSGVFLFLAKYLKELARGEDEITDAIPAALEDGDLDLAFLFRGYAYWSDVGTWDSLW 238

Query: 169 TGLRLYLDS 177
                 L  
Sbjct: 239 EANLKLLTG 247

This family includes a wide range of enzymes which transfer nucleotides onto phosphosugars. Length = 247

>gnl|CDD|133050 cd06428, M1P_guanylylT_A_like_N, N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

 Score =  133 bits (337), Expect = 2e-37
 Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 23/197 (11%)

Query: 1   MLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA 60
             +F+ + + +  + I   QE +PLGTAG L   RD+++      FFVLN+DV  ++P  
Sbjct: 61  FSDFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQ 120

Query: 61  EMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIY 118
           E++EFHK HG   +I+ T+   ++ S YG +V + STG+V  +VEKP+ FV + IN G+Y
Sbjct: 121 ELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVY 180

Query: 119 LLNPAVLDRIEL---------------------RPTSIEKEVFPKIALEGKLFAMVLPGF 157
           L +P + D I+                          +E++V   +A  GKL+      F
Sbjct: 181 LFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDF 240

Query: 158 WMDIGQPRDYITGLRLY 174
           W  I      I   RLY
Sbjct: 241 WSQIKTAGSAIYANRLY 257

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes including cell lysis, defective cell wall, and failure of polarized growth and cell separation. Length = 257

>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score =  133 bits (337), Expect = 3e-36
 Identities = 80/264 (30%), Positives = 121/264 (45%), Gaps = 33/264 (12%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
           + G+ I    + E LGTA  L  A++  +DD    F VLN DV+ +    E         
Sbjct: 69  RGGVPIEYVVQEEQLGTADALGSAKE-YVDD---EFLVLNGDVLLDSDLLE----RLIRA 120

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL 130
              +I V +VD+PS YGVV  +   G+V   VEKP+    N INAGIYL +P + + +E 
Sbjct: 121 EAPAIAVVEVDDPSDYGVVETDG--GRVTGIVEKPENPPSNLINAGIYLFSPEIFELLEK 178

Query: 131 RPTSIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLK 185
              S   E         +  EGK+ A+ L GFW+D+G+P D +      LD+L  +    
Sbjct: 179 TKLSPRGEYELTDALQLLIDEGKVKAVELDGFWLDVGRPWDLLDANEALLDNLEPRIEGT 238

Query: 186 LATGANIVGNVLVHESAQ------------IGEGCLIGPD------VAVGPGCVVESGVR 227
           +     I G V++ E A             IG+ C IGP+        +G    + + V 
Sbjct: 239 VEENVTIKGPVVIGEGAVIRSGTYIEGPVYIGKNCDIGPNAYIRPYTVIGNNVHIGNAVE 298

Query: 228 LSRCTVMRGVRIKKHACISSSIIG 251
           +    +M G +I   + +  S+IG
Sbjct: 299 IKNSIIMEGTKIPHLSYVGDSVIG 322

The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Many of the genes identified by this model are in proximity to the GlmS and GlmM genes and are also presumed to be GlmU. However, some archaeal genomes contain multiple closely-related homologs from this family and it is not clear what the substrate specificity is for each of them. Length = 393

>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

 Score =  117 bits (297), Expect = 6e-32
 Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 19/163 (11%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
           K G+ I   +E +PLGTAG L+L  +K      +PF V+N D+++   +  +++FHK + 
Sbjct: 67  KFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENN 122

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKL-FVGNKINAGIYLLNPAVLDRIE 129
            +A++ V + +    YGVV  E   G++    EKP   F    +NAGIY+L P VLD I 
Sbjct: 123 ADATVCVREYEVQVPYGVVETEG--GRITSIEEKPTHSF---LVNAGIYVLEPEVLDLIP 177

Query: 130 LR-----PTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 167
                  P  IEK     I    K+    +  +W+DIG+P DY
Sbjct: 178 KNEFFDMPDLIEKL----IKEGKKVGVFPIHEYWLDIGRPEDY 216

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 220

>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases

 Score =  115 bits (291), Expect = 4e-31
 Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 4/155 (2%)

Query: 13  GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE 72
           GI+I    E EPLGT G +  A  KL +D    F VLN D   +     ++   +A G +
Sbjct: 69  GIRIYYVIEPEPLGTGGAIKNALPKLPED---QFLVLNGDTYFDVDLLALLAALRASGAD 125

Query: 73  ASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP 132
           A++ + +V + S+YG V ++   G+V  FVEK        IN G+YLL   +L  I    
Sbjct: 126 ATMALRRVPDASRYGNVTVDGD-GRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADA 184

Query: 133 TSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 167
            S+E +V P +   G+L+   + G+++DIG P DY
Sbjct: 185 FSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDY 219

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. Length = 223

>gnl|CDD|100062 cd05824, LbH_M1P_guanylylT_C, Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

 Score =  106 bits (266), Expect = 3e-29
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query: 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 256
           L+  SA+IG+   IGP+V +GP   +  GVRL RC ++    ++ H+ + SSI+GW+STV
Sbjct: 1   LIDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTV 60

Query: 257 GQWARVENMTILGEDVHVCD 276
           G+W R+EN+T+LG+DV + D
Sbjct: 61  GRWTRLENVTVLGDDVTIKD 80

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 80

>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family

 Score = 93.8 bits (234), Expect = 8e-23
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 11/158 (6%)

Query: 13  GIKIICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGG 71
           G++I  S E  E L T G +  A   L D   EPF V+N D++ +   A ++  H     
Sbjct: 69  GLRITISDEPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMD 125

Query: 72  EASIMVTKVDEPSK--YGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE 129
              +++  V  P     G   ++   G++ +        V      GI +L+P +   I 
Sbjct: 126 ALLLLLPLVRNPGHNGVGDFSLDA-DGRLRRGGGG---AVAPFTFTGIQILSPELFAGIP 181

Query: 130 LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 167
               S+   ++ +    G+LF +V  G W D+G P   
Sbjct: 182 PGKFSL-NPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. Length = 221

>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 74/271 (27%), Positives = 130/271 (47%), Gaps = 15/271 (5%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE-FHKAH 69
           + G KI    + EPLG A  +  ARD L DD    F V   D + +   +  ++ F +  
Sbjct: 69  RFGAKITYIVQGEPLGLAHAVYTARDFLGDD---DFVVYLGDNLIQDGISRFVKSFEEKD 125

Query: 70  GGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE 129
             +A I++TKV +P+ +GV V+E+   ++ K VEKPK    N    G+Y+  P + + I+
Sbjct: 126 Y-DALILLTKVRDPTAFGVAVLEDG-KRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIK 183

Query: 130 LRPTSIEKEVFPKIALEG------KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSS 183
               S   E+    A++       K+    + G+W D G+P D +   RL LD + ++  
Sbjct: 184 NIKPSWRGELEITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEV-EREV 242

Query: 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA 243
             +   + I G V+V E A+I    + GP   +G  C++E+       ++  GV I+   
Sbjct: 243 QGVDDESKIRGRVVVGEGAKIVNSVIRGP-AVIGEDCIIENSYIGPYTSIGEGVVIRDAE 301

Query: 244 CISSSIIGWHSTVGQWARVENMTILGEDVHV 274
              S ++      G  AR+ + +++G+ V +
Sbjct: 302 VEHSIVLDESVIEGVQARIVD-SVIGKKVRI 331

The family of known and putative glucose-1-phosphate thymidyltransferase (also called dTDP-glucose synthase) shows a deep split into a short form (see TIGR01207) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. This form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Alternate name: dTDP-D-glucose synthase. Length = 353

>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

 Score = 91.9 bits (229), Expect = 6e-22
 Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 15/154 (9%)

Query: 27  TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY 86
           T G L   R  L DD  E F +   D +S+     +IEFH++HG  A   VT V  P ++
Sbjct: 104 TGGRLKRVRRYLGDD--ETFMLTYGDGVSDVNINALIEFHRSHGKLA--TVTAVHPPGRF 159

Query: 87  GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE 146
           G + +++  G+V  F EKP+   G  IN G ++L P V D I+   T  E+E   ++A +
Sbjct: 160 GELDLDDD-GQVTSFTEKPQG-DGGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKD 217

Query: 147 GKLFAMVLPGFW--MDIGQPRDYITGLRLYLDSL 178
           G+L A    GFW  MD    RD        L+ L
Sbjct: 218 GELMAYKHTGFWQCMD--TLRDK-----QTLEEL 244

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity. Length = 253

>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

 Score = 91.1 bits (227), Expect = 1e-21
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 11/173 (6%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
           + G++I    + EPLG A  +  ARD L D+   PF V   D + +   + ++       
Sbjct: 69  RFGVRITYILQEEPLGLAHAVLAARDFLGDE---PFVVYLGDNLIQEGISPLVRDFLEED 125

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-E 129
            +ASI++ +V++P ++GV V+++  G++ + VEKPK    N    G+Y   PA+ D I  
Sbjct: 126 ADASILLAEVEDPRRFGVAVVDD--GRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISR 183

Query: 130 LRPTSI-EKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITGLRLYLDS 177
           L+P+   E E+   I        ++   ++ G+W D G P D +   RL LD 
Sbjct: 184 LKPSWRGELEITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLDK 236

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. Length = 236

>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

 Score = 92.3 bits (230), Expect = 3e-21
 Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 40/287 (13%)

Query: 38  LIDDTGEPFFV-LNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEES 94
           +I  +   + + L+ D I +  +++M++FH   G + ++ V +V   E S++GV+ ++E+
Sbjct: 113 IIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDEN 172

Query: 95  TGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIEL------RPTS---IEKEVFPKI 143
            G++ +FVEKP       +  + GIY+ N  +L   EL       P S     K++ PK+
Sbjct: 173 -GRIIEFVEKPADGPPSNSLASMGIYIFNTDLL--KELLEEDAKDPNSSHDFGKDIIPKL 229

Query: 144 ALEGKLFAMVLPGFWMDIGQPRDYIT----------GLRLYLDSLRKKSSLKLATGANIV 193
              GK++A    G+W D+G    Y             L LY  +    +  K    A  V
Sbjct: 230 LERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFV 289

Query: 194 GNVLVHESAQIGEGCLIGPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 250
            +  V  S  +  GC+I   V    +  G  +  G  +    +M  V I + A +  +II
Sbjct: 290 NDSEVSNS-LVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAII 348

Query: 251 GWHSTVGQWARVENMTILGEDVHVCDE---IYSNGGVVLPHKEIKSS 294
             +        +    ++G D    D        G VV+P   +   
Sbjct: 349 DKN------VVIGEGVVIGGDKPEEDRKRFRSEEGIVVVPKGMVIKL 389

Length = 393

>gnl|CDD|224128 COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

 Score = 88.8 bits (221), Expect = 8e-20
 Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 40/283 (14%)

Query: 22  TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTK 79
            E LGT   +  A   L DD      VL  DV  I+     E++  H AHG  A+++  +
Sbjct: 75  EEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134

Query: 80  VDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVLDR--IELRPT 133
           +D+P+ YG +V + + G+V   VE+     +     +IN GIY  + A L R   +L   
Sbjct: 135 LDDPTGYGRIVRDGN-GEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNN 193

Query: 134 SIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDY--ITGL--RLYLDSL------R 179
           + + E +      IA         +           D   + G+  R+ L         R
Sbjct: 194 NAQGEYYLTDVIAIARNEGEKVRAV--------HVDDEEEVLGVNDRVQLAEAERIMQRR 245

Query: 180 KKSSLKLATGANIV--GNVLVHESAQIGEGCLIGPDV------AVGPGCVVESGVRLSRC 231
               L LA G  ++      +    +IG   +I P+V       +G   V+  G  +   
Sbjct: 246 IAEKLMLA-GVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDS 304

Query: 232 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
            +     IK ++ I  S +G  +TVG +AR+    +LG DVH+
Sbjct: 305 VIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHI 347

Length = 460

>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 81.1 bits (201), Expect = 8e-18
 Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 23/213 (10%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
             G+ I  + + EP G A  + +A D  + D  + F +   D I +   +E++E     G
Sbjct: 70  DFGVDITYAVQPEPDGLAHAVLIAED-FVGD--DDFVLYLGDNIFQDGLSELLEHFAEEG 126

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL 130
             A+I++ +VD+PS+YGVV  +E  GKV    EKPK    N    G+Y  +P+V + I+ 
Sbjct: 127 SGATILLYEVDDPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQ 185

Query: 131 RPTSIEKEVFPKIALE-----------GKL-FAMVLPGFWMDIGQPRDYITGLRLYLDSL 178
              S   E      LE           G L  A+++ G+W+D G P   +     ++ ++
Sbjct: 186 IKPSARGE------LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANN-FVRTV 238

Query: 179 RKKSSLKLATGANIVGNVLVHESAQIGEGCLIG 211
            K+   K+A    I  N  +     IG    + 
Sbjct: 239 SKRQGFKIACPEEIAWNGWIDGPGLIGLASQLE 271

Length = 286

>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 10/147 (6%)

Query: 27  TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY 86
           T G L   R+ L D   E F     D +++     +I FH+ HG +A+  VT V  P ++
Sbjct: 105 TGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKAT--VTAVQPPGRF 159

Query: 87  GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE 146
           G + +E    +V  F EKP L  G  IN G ++LNP+VLD I+   T  E+E    +A  
Sbjct: 160 GALDLEG--EQVTSFQEKP-LGDGGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQR 216

Query: 147 GKLFAMVLPGFW--MDIGQPRDYITGL 171
           G+L A    GFW  MD  + ++Y+  L
Sbjct: 217 GELSAYEHSGFWQPMDTLRDKNYLEEL 243

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|233299 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 72/288 (25%), Positives = 119/288 (41%), Gaps = 50/288 (17%)

Query: 20  QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV 77
            + E LGT   +  A   L DD      VL  DV  IS      ++E H+ +G   +++ 
Sbjct: 70  LQAEQLGTGHAVLQALPFLPDD--GDVLVLYGDVPLISAETLERLLEAHRQNG--ITLLT 125

Query: 78  TKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVLDRI--ELR 131
            K+ +P+ YG ++ E   GKV   VE      +     +IN G+Y+ + A L R   +L 
Sbjct: 126 AKLPDPTGYGRIIREND-GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLS 184

Query: 132 PTSIEKEVFPK--IALEGKLFAMVLPGFWMDIGQPRDY--ITGL----------RLYLDS 177
             + + E +    IAL       V  G  +   Q  D   + G+          R+    
Sbjct: 185 NNNAQGEYYLTDVIAL------AVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRR 238

Query: 178 LRKK-----------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGV 226
           + KK           +   +     I  +V +  +  +     IG DV +GPGCV+++  
Sbjct: 239 IAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKN-- 296

Query: 227 RLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
                 +   V IK ++ +  S IG    VG +AR+   ++LG  VH+
Sbjct: 297 ----SVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHI 340

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars]. Length = 451

>gnl|CDD|100046 cd03356, LbH_G1P_AT_C_like, Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 256
           L+ ES  IGE  +I   V +G    +  GV ++   +M  V I  ++ I  SIIG ++ +
Sbjct: 1   LIGESTVIGENAIIKNSV-IGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVI 59

Query: 257 GQWARVENMTILGEDVHV 274
           G+  RV N+ I+G+DV V
Sbjct: 60  GENVRVVNLCIIGDDVVV 77

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 79

>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase

 Score = 74.6 bits (184), Expect = 4e-15
 Identities = 59/258 (22%), Positives = 110/258 (42%), Gaps = 32/258 (12%)

Query: 38  LIDDTG-EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEES 94
           LI+D   E   +L+ D I +  + +M+++H   G + +I    V   E S++GV+ ++E 
Sbjct: 105 LIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE- 163

Query: 95  TGKVEKFVEKPKLFVGNKINA-------GIYLLNPAVL-----DRIELRPTSIE--KEVF 140
            G++  F EKP                 GIY+ +  VL     +  +   +S +  K++ 
Sbjct: 164 DGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223

Query: 141 PKIALEGKLFAMVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGA 190
           P+   EG + A +  G+W D+G    +          +    LY       +  +    A
Sbjct: 224 PRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPA 283

Query: 191 NIVGNVLVHESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACIS 246
             V +      + + EGC+I G  V+   +G    + SG  +    +M  V I + A I 
Sbjct: 284 KFVDSDAQVVDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR 343

Query: 247 SSIIGWHSTVGQWARVEN 264
           ++II  +  +G+   + N
Sbjct: 344 NAIIDKNVRIGEGVVIGN 361

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 361

>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 69/282 (24%), Positives = 118/282 (41%), Gaps = 60/282 (21%)

Query: 48  VLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKP 105
           +L+ D I +  + +M+++HK    + +I V +V  +E S++G++  +E   ++ +F EKP
Sbjct: 122 ILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDE-NMRIVEFEEKP 180

Query: 106 KLFVGNKINAGIYLLN----PAVLDRIELRPTSIE---KEVFPKIALEG-KLFAMVLPGF 157
           K    N  + GIY+ N       L   E  P S     K V P    EG KL+A    G+
Sbjct: 181 KNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPFKGY 240

Query: 158 WMDIGQPRDYITGLRLYLDSLRKKSSLKL-------------------ATGANIVGNVLV 198
           W D+G            ++ LR ++ L L                   A  A +  N LV
Sbjct: 241 WKDVGTIESL---WEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLV 296

Query: 199 HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQ 258
            E                  GCVV   V  S   + +GV++ + + +  S+I   + +G+
Sbjct: 297 VE------------------GCVVYGTVEHS--VLFQGVQVGEGSVVKDSVIMPGAKIGE 336

Query: 259 WARVENMTILGEDVHVCDEIYSNGG-----VVLPHKEIKSSI 295
              +E   I+GE+  + D +   GG     V+  ++ I    
Sbjct: 337 NVVIER-AIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGT 377

Length = 380

>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the synthesis of UDP-glucose

 Score = 66.8 bits (164), Expect = 8e-13
 Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 19/175 (10%)

Query: 9   EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYP-FAEMIEF 65
                  I   ++ EPLG    +  A+   I D  EPF VL  D +  S+ P   ++IE 
Sbjct: 88  IISDLANIHYVRQKEPLGLGHAVLCAKP-FIGD--EPFAVLLGDDLIDSKEPCLKQLIEA 144

Query: 66  HKAHGGEASIMVTKVDEP--SKYGVVVMEESTG---KVEKFVEKPKLFVG--NKINAGIY 118
           ++  G  + I V +V     SKYG+V  E+  G   KV+  VEKPK      N    G Y
Sbjct: 145 YEKTGA-SVIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRY 203

Query: 119 LLNPAVLDRIELRPTSIEKEV-----FPKIALEGKLFAMVLPGFWMDIGQPRDYI 168
           +L P + D +E        E+       K+  E  ++A V  G   D G    Y+
Sbjct: 204 VLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYL 258

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. Length = 267

>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 51/321 (15%)

Query: 6   KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMI 63
           +E +  LG +   + + E LGT   +  A + L D  G    V+  D   I+      +I
Sbjct: 57  EEVKEVLGDRSEFALQEEQLGTGHAVMQAEEFLADKEGT-TLVICGDTPLITAETLKNLI 115

Query: 64  EFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGIYL 119
           +FH+ H   A+I+    + P+ YG ++  E+ G+VEK VE      +     +IN G Y 
Sbjct: 116 DFHEEHKAAATILTAIAENPTGYGRIIRNEN-GEVEKIVEQKDATEEEKQIKEINTGTYC 174

Query: 120 LNPAVLDRI--ELRPTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYITGL 171
            +   L     ++   + + E +    +E       K+ A     F        +   G+
Sbjct: 175 FDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDF--------EESLGV 226

Query: 172 --RLYL----DSLRKKSSLK-LATGANIVG--NVLVHESAQIGE------GCLIGPDVAV 216
             R+ L      +R++ + K +  G  I+   +  +    +IG       G +I  +  +
Sbjct: 227 NDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVI 286

Query: 217 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276
           G  CV+  G R+   T+  GV I  ++ I  S +G + TVG +A +   +++GE+V +  
Sbjct: 287 GEDCVIGPGSRIVDSTIGDGVTI-TNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKI-- 343

Query: 277 EIYSNGGVVLPHKEIKSSILK 297
                G  V    EIK S + 
Sbjct: 344 -----GNFV----EIKKSTIG 355

Length = 458

>gnl|CDD|237685 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 35/286 (12%)

Query: 16  IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEA 73
           +  + + E LGT   +A A   L   +G    +L  DV  +       M+  H+A G   
Sbjct: 70  VSFALQEEQLGTGHAVACAAPALDGFSGT-VLILCGDVPLLRAETLQGMLAAHRATGAAV 128

Query: 74  SIMVTKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVL-DRI 128
           +++  +++ P  YG +V  ++ G+V + VE+    P+     ++N+GIY +  A L D I
Sbjct: 129 TVLTARLENPFGYGRIV-RDADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAI 187

Query: 129 -ELRPTSIEKEVF----PKIALEGKLFAMVLPGFWMDIGQPRDYITGL--RLYLDS---- 177
             L   + + E +      +A    L  +  P     +  P + I G+  R  L      
Sbjct: 188 GRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFP-----VADPDE-IMGVNDRAQLAEAARV 241

Query: 178 LRKKSSLKLA-TGANIV--GNVLVHESAQIGEGCLIGPDVA------VGPGCVVESGVRL 228
           LR++ + +L   G  ++      +     IG    I P V       +G GC +E GV +
Sbjct: 242 LRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVI 301

Query: 229 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
             C +   V +K  + +  S++G    +G  A +   T L   V +
Sbjct: 302 KGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKI 347

Length = 459

>gnl|CDD|100044 cd03353, LbH_GlmU_C, N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 204 IGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 263
           I  G ++     +G  CV+     +   T+  GV IK  + I  ++IG  +TVG +A + 
Sbjct: 24  IDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLR 83

Query: 264 NMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIL 296
             T+LGE VH+       G  V    EIK S +
Sbjct: 84  PGTVLGEGVHI-------GNFV----EIKKSTI 105

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer. Length = 193

>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 20/134 (14%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 62
           +K+  A   ++ +  QE E LGT   +  A   L D  G+   VL  DV  I+      +
Sbjct: 55  VKKALANPNVEFV-LQE-EQLGTGHAVKQALPALKDFEGD-VLVLYGDVPLITPETLQRL 111

Query: 63  IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE---------KPKLFVGNKI 113
           +E H+  G + +++  ++++P+ YG ++ + + GKV + VE           +      +
Sbjct: 112 LEAHREAGADVTVLTAELEDPTGYGRIIRDGN-GKVLRIVEEKDATEEEKAIRE-----V 165

Query: 114 NAGIYLLNPAVLDR 127
           NAGIY  +   L  
Sbjct: 166 NAGIYAFDAEFLFE 179

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. Length = 229

>gnl|CDD|100057 cd04652, LbH_eIF2B_gamma_C, eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 256
           LV E+ Q+GE   I   V +G  C +   V+++ C +M  V I+    + + IIG  + +
Sbjct: 1   LVGENTQVGEKTSIKRSV-IGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVI 59

Query: 257 GQWARVEN 264
           G+  ++++
Sbjct: 60  GEKCKLKD 67

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange. Length = 81

>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 69/281 (24%), Positives = 120/281 (42%), Gaps = 43/281 (15%)

Query: 21  ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVT 78
           + E LGTA  +  ARD +  + G+   +L  DV  ISE     +IE H   G + +I+V 
Sbjct: 69  QEEQLGTAHAVMCARDFI--EPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVA 126

Query: 79  KVDEPSKYGVVVMEESTGKVEKFVEK---PKLFVGNKINAGIYLLNPAVLDRIELRPTSI 135
            +++P+ YG ++ +   GK     +K    +     +IN GIY+ +   L          
Sbjct: 127 DLEDPTGYGRIIRDG--GKYRIVEDKDAPEEEKKIKEINTGIYVFSGDFL---------- 174

Query: 136 EKEVFPKIA---LEGKLFAMVLPGFWMDIGQPR----DYITGL--RLYLDSLRKKSSLK- 185
             EV PKI     +G+ +      F   +   +      ITG+  R+ L  L K+  ++ 
Sbjct: 175 -LEVLPKIKNENAKGEYYLTDAVNFAEKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRI 233

Query: 186 ----LATGANIV--GNVLVHESAQIGEGCLIGP------DVAVGPGCVVESGVRLSRCTV 233
               +  G  I+      +H   +IG   +I P         +G  C +    R+  C +
Sbjct: 234 LEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEI 293

Query: 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
              V+I +  C   S+I    +VG ++R+   T+L + V +
Sbjct: 294 GNNVKIIRSEC-EKSVIEDDVSVGPFSRLREGTVLKKSVKI 333

Length = 448

>gnl|CDD|100043 cd03352, LbH_LpxD, UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 15/109 (13%)

Query: 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 241
           S K+    +I  N ++ E   IG+G +IGP V +G G V+     +    T+  G  I  
Sbjct: 1   SAKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGD 60

Query: 242 HACI--SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 281
              I  S ++IG     +    G W ++  +   I+G+DV    EI +N
Sbjct: 61  R-VIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDV----EIGAN 104

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Length = 205

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 36/282 (12%)

Query: 20  QETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAEMIEFHKAHGGEASIMV 77
           QE + LGT   L  A   L     +   V+N D  +++     + ++  +A G + + M 
Sbjct: 76  QE-QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLK--EAAGADLAFMT 132

Query: 78  TKVDEPSKYGVVVMEESTGKVEKFVE----KPKLF--VGNKINAGIYLLNPAV----LDR 127
             + +P  YG VV     G V   VE       L      ++NAGIY L        L R
Sbjct: 133 LTLPDPGAYGRVVRRN--GHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPR 190

Query: 128 IELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLA 187
           +     S E  +   + L       VL    ++ G+  + + G+    + +R +  L+  
Sbjct: 191 LTNANKSGEYYITDLVGLAVAEGMNVLG---VNCGEDPNLL-GVNTPAELVRSEELLRAR 246

Query: 188 TGAN-IVGNVLVH--ESAQIGEGCLIGPDVAV-GP-----------GCVVESGVRLSRCT 232
                +   VL+H  ES +IG    I P   + GP           G V+ S   L    
Sbjct: 247 IVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAV 306

Query: 233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
           V  G  I   + +  + +G   +VG +AR+    +L E   V
Sbjct: 307 VSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARV 348

Length = 456

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 256
           +H SA I     IG  V++GP  V+ +GV +     +  G  I          IG    +
Sbjct: 103 IHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDG-----VKIGADCRL 157

Query: 257 GQWARVENMTILGEDVHV 274
                + +   +G  V +
Sbjct: 158 HANVTIYHAVRIGNRVII 175

Length = 343

>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 25/129 (19%)

Query: 59  FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME-ESTGKVEKFVEKPK----------- 106
           +   ++ H+  G + ++ V  VDE    G  +M+ +  G++ +F EKPK           
Sbjct: 132 YRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDT 191

Query: 107 -LFVGNKINA---------GIYLLNPAVL-DRIELRPTSIE--KEVFPKIALEGKLFAMV 153
                +   A         GIY+ +  VL D +   P   +  KE+ P+   + K+ + +
Sbjct: 192 SRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYL 251

Query: 154 LPGFWMDIG 162
             G+W DIG
Sbjct: 252 FDGYWEDIG 260

Length = 429

>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 54/250 (21%), Positives = 98/250 (39%), Gaps = 57/250 (22%)

Query: 47  FVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK 104
            VLN DV  +       ++  H++   + +++  ++  P  YG V  + +   VE+ VE 
Sbjct: 98  LVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCDGN-NLVEQIVED 156

Query: 105 ----PKLFVGNKINAGIYLLNPAVLDRI--ELRPTSIEKEVFPKIALEGKLFAMVLPGFW 158
               P     N+INAGIY  N   L  +  +L   + +KE +    +     +++ P   
Sbjct: 157 RDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTV-----SLLDPVMA 211

Query: 159 MDIGQPRDYITGL--RLYL--------DSLRKKSSLKLATGANIVGNVLVHESAQIGEGC 208
           +++      I G+  R  L        + +++K  L   T  +         S  I E  
Sbjct: 212 VEVEDY-QEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFID-------PASCTISETV 263

Query: 209 LIGPDVAV------------------GPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 250
            +GPDV +                  GPG ++E+       TV+       ++ +S S I
Sbjct: 264 ELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVL-------YSVVSDSQI 316

Query: 251 GWHSTVGQWA 260
           G    +G +A
Sbjct: 317 GDGVKIGPYA 326

Length = 450

>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 38/171 (22%)

Query: 23  EPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTK 79
           EPLG    +  A+   + D  EPF VL  D +  SE P   +MIE ++  GG   I V +
Sbjct: 106 EPLGLGHAVLCAKP-FVGD--EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEE 161

Query: 80  V--DEPSKYGVV----VMEESTGKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELR 131
           V  ++ SKYGV+     +E+   KV+  VEKPK      N    G Y+L P + D +E  
Sbjct: 162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEET 221

Query: 132 P--------------TSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYI 168
                            ++KE       EGK +         D G    YI
Sbjct: 222 KPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRY---------DCGSKLGYI 263

Length = 291

>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 64/285 (22%), Positives = 103/285 (36%), Gaps = 76/285 (26%)

Query: 59  FAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG-----N 111
             +M++FH   G   ++  +    +E S +GV+ ++   G++  F+EKP    G     +
Sbjct: 133 PRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPD-GRIRGFLEKPADPPGLPDDPD 191

Query: 112 KINA--GIYLLNPAVLDRIELR-----PTSIE---KEVFPKIALEGKLFAM-----VLPG 156
           +  A  G Y+     L    LR       S      ++ P++   G+ +        +PG
Sbjct: 192 EALASMGNYVFTTDALVD-ALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPG 250

Query: 157 -------FWMDIG---------------QPRDYITGLRLYLDSLRKKSSLKLATGANIVG 194
                  +W D+G                P        LY       +S      A  V 
Sbjct: 251 ATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-----FNLYNREWPIYTSSPNLPPAKFVD 305

Query: 195 NVLVHESAQ---IGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISS 247
                 SAQ   +  G +I G  V    + P  VVESG  +    +M GVRI + A +  
Sbjct: 306 GGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR 365

Query: 248 SIIGWHSTVGQWARVENMTILGEDV-------HVCDEIYSNGGVV 285
           +I+  +  V         TI G D+        V     S GG+V
Sbjct: 366 AILDKNVVVP-----PGATI-GVDLEEDRRRFTV-----SEGGIV 399

Length = 407

>gnl|CDD|233272 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 16/141 (11%)

Query: 44  EPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGVV---VMEEST 95
           EPF V+  D I  SE P   +MI+ ++ +G    I V +V  +E SKYGV+    +EE  
Sbjct: 120 EPFAVILGDDICVSEEPVLKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGV 178

Query: 96  GKVEKFVEKPKLFVG--NKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALEGK 148
            +++  VEKPK      N    G Y+L P + + +E  P     E+       K+  + +
Sbjct: 179 YEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFELLEETPPGKGGEIQLTDALRKLLKKER 238

Query: 149 LFAMVLPGFWMDIGQPRDYIT 169
           ++A    G   D G    YI 
Sbjct: 239 VYAYKFKGKRYDCGSKLGYIK 259

Built to distinquish between the highly similar genes galU and galF [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 260

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 241
           S K+  G  I  NV++    +IGE  +IGP V +G   V+  G R+     +   V++ K
Sbjct: 103 SAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGK 162

Query: 242 HACI-SSSIIGW------HSTVGQWARVENM--TILGEDVHV 274
           +  I S ++IG       H+  G   ++  +   I+ +DV +
Sbjct: 163 NVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEI 204

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|237688 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 23/234 (9%)

Query: 61  EMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAG 116
            ++  H+A G   +I+  ++ + + YG +V     G VE+ VE+       K     N+G
Sbjct: 119 ALVADHRAQGSAMTILTGELPDATGYGRIVRGAD-GAVERIVEQKDATDAEKAIGEFNSG 177

Query: 117 IYLLN---PAVLDRI-------ELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRD 166
           +Y+ +   P +  RI       E   T +   ++     + + F +  P   +     R 
Sbjct: 178 VYVFDARAPELARRIGNDNKAGEYYLTDL-LGLYRAGGAQVRAFKLSDPDEVLG-ANDRA 235

Query: 167 YITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGV 226
            +  L   L     ++ +K        G +L+ ++  +G    I P V +     V  GV
Sbjct: 236 GLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGV 295

Query: 227 RLSRCTVM------RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
            +   +V+       G  IK H+ +  + +G  S VG +AR+   T+LGE VH+
Sbjct: 296 TIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHI 349

Length = 481

>gnl|CDD|100060 cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 22/90 (24%), Positives = 41/90 (45%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
            + +GA I G V++ +  +IG    I     +G GCVV + V +    +M G ++     
Sbjct: 25  IVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNY 84

Query: 245 ISSSIIGWHSTVGQWARVENMTILGEDVHV 274
           +  S++G +  +G      N+    + V V
Sbjct: 85  VGDSVLGENVNLGAGTITANLRFDDKPVKV 114

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Length = 163

>gnl|CDD|188173 TIGR01852, lipid_A_lpxA, acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
           +H +A I  G  IG +V +GP C+V  GV++       GV +K H  I       H+T+G
Sbjct: 1   IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIG-----DGVELKSHVVILG-----HTTIG 50

Query: 258 QWARVENMTILGED 271
           +  R+    ++G  
Sbjct: 51  EGTRIFPGAVIGGV 64

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 254

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 245
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 7   IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASI 62

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 12  LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-YPFAEMIEFHKAHG 70
           LGI+I  + + +P G A    +  + + DD   P  ++  D I      + +++   A  
Sbjct: 71  LGIRITYAVQPKPGGLAQAFIIGEEFIGDD---PVCLILGDNIFYGQGLSPILQRAAAQK 127

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-- 128
             A++   +V++P +YGVV  +E+ G+V    EKPK    N    G+Y  +  V +    
Sbjct: 128 EGATVFGYEVNDPERYGVVEFDEN-GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQ 186

Query: 129 -------ELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYI 168
                  EL  T +  E   K    GKL   +L     W+D G     +
Sbjct: 187 LKPSARGELEITDVNNEYLEK----GKLSVELLGRGFAWLDTGTHESLL 231

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. Length = 240

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 245
           +V   A+IGE       C+IGP+V +G G V+ S V +   T + +  RI   A I
Sbjct: 10  IVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65

Length = 262

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 254
              +H +A I  G  IG DV +GP C++   V +       G  +K H  +       H+
Sbjct: 3   MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIG-----DGTVLKSHVVVEG-----HT 52

Query: 255 TVGQWARVENMTILGED 271
           T+G+  R+     +GED
Sbjct: 53  TIGRNNRIFPFASIGED 69

Length = 260

>gnl|CDD|234858 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 240
            S K+  G +I  N ++     IG+G +IG    +G G  + +  RL +  T+   VRI 
Sbjct: 111 PSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIG 170

Query: 241 KHACI-SSSIIG 251
               I S ++IG
Sbjct: 171 NRVIIHSGAVIG 182

Length = 343

>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 44.3 bits (106), Expect = 3e-05
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 254
              +H +A +  G  IG +V +GP CV+   V +       G  I  H  I       H+
Sbjct: 2   MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIG-----DGTVIGSHVVIDG-----HT 51

Query: 255 TVGQWARVENMTILGED 271
           T+G+  R+     +GED
Sbjct: 52  TIGKNNRIFPFASIGED 68

Length = 262

>gnl|CDD|223974 COG1044, LpxD, UDP-3-O-[3-hydroxymyristoyl]

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 243
            +    +I  NV++     IGE  +IG    +G    +  G  +    T+   V I  + 
Sbjct: 113 TIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNV 172

Query: 244 CISS-SIIG 251
            I S ++IG
Sbjct: 173 IIHSGAVIG 181

Length = 338

>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 39/145 (26%)

Query: 14  IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE----FHKAH 69
           + +I S   E  G A  L   R  +  D    F +L+ D++S  P +E++E      K  
Sbjct: 78  VDVITSDLCESAGDALRLRDIRGLIRSD----FLLLSCDLVSNIPLSELLEERRKKDKNA 133

Query: 70  GGEASIMVTKVDEPS---------KYGVVVMEESTGKV-----EKFVEKPKLFVGNK--- 112
              A++ V     P          +  V+ ++  T ++     E+ +++    +  K   
Sbjct: 134 --IATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLL 191

Query: 113 ------------INAGIYLLNPAVL 125
                       ++  IY+ +P VL
Sbjct: 192 SKHPNVTIRTDLLDCHIYICSPDVL 216

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex. Length = 216

>gnl|CDD|233599 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-SS 247
           A I    +V  SA+IG+G  IGP+V +G G  +   V +     +   V I   + I  +
Sbjct: 92  AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151

Query: 248 SIIGWHSTVGQWARVENMTILGED----VHVCDE----IYSNGGVVL 286
            +I     +G+   + +  ++G D     H  +     I   G V++
Sbjct: 152 VVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVII 198

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 324

>gnl|CDD|100051 cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 30/105 (28%)

Query: 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 248
             NI    ++H     G   +IG +V VG G V+        CT+               
Sbjct: 44  RTNIQDGSVLHVDP--GYPTIIGDNVTVGHGAVLHG------CTIGDNC----------- 84

Query: 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKS 293
           +IG  + +   A +   +I+             G +V P K I  
Sbjct: 85  LIGMGAIILDGAVIGKGSIVAA-----------GSLVPPGKVIPP 118

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain. Length = 153

>gnl|CDD|100050 cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 196 VLVH------ESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSS 248
            L+H       SA IGEGC+I     + P   +   V + +   +     I     I+  
Sbjct: 85  TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144

Query: 249 -------IIGWHSTVGQWARVENMTILGEDVHV 274
                   IG  + +G  A +     +G    +
Sbjct: 145 VVLSGGVTIGEGAFIGAGATIIQGVTIGAGAII 177

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation. Length = 197

>gnl|CDD|100042 cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 256
           +H +A +  G  IG +V +GP CV+   V +       G  I  H  I   + IG ++ +
Sbjct: 2   IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIG-----DGTVIGSHVVIDGPTTIGKNNRI 56

Query: 257 GQWA 260
             +A
Sbjct: 57  FPFA 60

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region. Length = 254

>gnl|CDD|184641 PRK14352, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 66/283 (23%), Positives = 115/283 (40%), Gaps = 44/283 (15%)

Query: 20  QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV 77
           Q+ E  GT   +  A + L  D      V   DV  +     A+++  H A G   +++ 
Sbjct: 77  QD-EQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135

Query: 78  TKVDEPSKYGVVVMEESTGKVEKFVEK----PKLFVGNKINAGIYLLNPAVL-DRI-ELR 131
           T +D+P+ YG ++  +  G+V   VE+    P      ++N+G+Y  + AVL   +  L 
Sbjct: 136 TTLDDPTGYGRIL-RDQDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLS 194

Query: 132 PTSIEKEVFPKIALE------GKLFAMVLPGFWMDIGQPRDYITGL--RLYLDSLRKKSS 183
             + + E++    L        ++ A                + G+  R+ L +L  + +
Sbjct: 195 SDNAQGELYLTDVLAIAREAGHRVGAHHADDSAE--------VAGVNDRVQLAALGAELN 246

Query: 184 LKLATGANIVGNVLVHESAQ--IGEGCLIGPDVAVGPG------------CVVESGVRLS 229
            ++       G V + + A   I     IG DV + PG             VV     L+
Sbjct: 247 RRIVEAWMRAG-VTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT 305

Query: 230 RCTVMRGVR-IKKHACISSSIIGWHSTVGQWARVENMTILGED 271
             TV  G   ++ H   S S IG  +TVG +  +   T+LGE+
Sbjct: 306 DVTVGEGASVVRTHG--SESEIGAGATVGPFTYLRPGTVLGEE 346

Length = 482

>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 76/235 (32%)

Query: 59  FAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 115
           + + ++ H+  G + +I    VDE   S +G++ ++  TG++ +F EKPK   G+++ A 
Sbjct: 138 YMDFVQKHRESGADITIACLPVDESRASDFGLMKID-DTGRIIEFSEKPK---GDELKAM 193

Query: 116 -----------------------GIYLLNPAVLDRIELR---PTSIE--KEVFPKIALEG 147
                                  GIY+    VL ++ LR   PT+ +   E+ P    EG
Sbjct: 194 QVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKL-LRWRFPTANDFGSEIIPGAIKEG 252

Query: 148 -KLFAMVLPGFWMDIGQPRD-YITGLRL--------YLDSLRK--KSSLKL----ATGAN 191
             + A +  G+W DIG  +  Y   L L        + D       S   L         
Sbjct: 253 YNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCR 312

Query: 192 IVGNVLVHESAQIGEGC----------LIGPDVAVGPGCVVESGVRLSRCTVMRG 236
           I  ++       I  GC          ++G    +G G  +E        TVM G
Sbjct: 313 ITDSI-------ISHGCFLRECKIEHSVVGLRSRIGEGVEIED-------TVMMG 353

Length = 436

>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 13/79 (16%)

Query: 198 VHESA--QIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHST 255
           V  S    IG   +I P+V  GPG  V S           G  I   + +  + +G  + 
Sbjct: 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVAS-----------GAVIHAFSHLEGAHVGEGAE 311

Query: 256 VGQWARVENMTILGEDVHV 274
           VG +AR+     LGE   V
Sbjct: 312 VGPYARLRPGAELGEGAKV 330

Length = 446

>gnl|CDD|100048 cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV-----MRGVRIKKHACI-SSS 248
           NV +  +  I EG  I  DV +GP  VV +     R  +     ++G  +K+ A I +++
Sbjct: 22  NVKIQSNVSIYEGVTIEDDVFIGP-NVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANA 80

Query: 249 IIGWHSTVGQWARV 262
            I    T+G++A V
Sbjct: 81  TILPGVTIGEYALV 94

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity. Length = 119

>gnl|CDD|100056 cd04651, LbH_G1P_AT_C, Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 22/98 (22%)

Query: 200 ESAQIGEGC----------LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 249
           +++ + EGC          ++   V VG G VVE  V      +M  V I ++A I  +I
Sbjct: 11  KNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSV------IMPNVGIGRNAVIRRAI 64

Query: 250 IGWHSTVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 286
           I  +  +      + + I G+        Y +  G+V+
Sbjct: 65  IDKNVVIP-----DGVVIGGDPEEDRARFYVTEDGIVV 97

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization. Length = 104

>gnl|CDD|237686 PRK14356, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 200 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS------SSIIGWH 253
           E A++G+GC +GP   + PG V+E G R+     M+   + K A  +       + IG  
Sbjct: 320 EGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAG 379

Query: 254 STVG 257
           + +G
Sbjct: 380 ANIG 383

Length = 456

>gnl|CDD|223973 COG1043, LpxA, Acyl-[acyl carrier protein]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 190 ANIVGNVLVHESAQIGEG------CLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKH 242
           A I    ++   A+IGE       C+IGP+V +G G V++S V +    T+ R  RI   
Sbjct: 4   AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPF 63

Query: 243 ACI 245
           A I
Sbjct: 64  ASI 66

Length = 260

>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 256
           ++H +A I     +G  V +GP  V+ + V      +  G  I  HA     I+G  + +
Sbjct: 1   MIHPTAVIDPSAKLGSGVEIGPFAVIGANV-----EIGDGTWIGPHA----VILGP-TRI 50

Query: 257 GQWARVENMTILGED 271
           G+  ++    ++G++
Sbjct: 51  GKNNKIHQGAVVGDE 65

Length = 255

>gnl|CDD|237689 PRK14359, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 19/110 (17%)

Query: 26  GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIM--VTKVDEP 83
           GT G L       I+   E   +LN D+    P  E  E  K    +A I+  V  + +P
Sbjct: 81  GTGGAL-----MGIEPKHERVLILNGDM----PLVEKDELEKLLENDADIVMSVFHLADP 131

Query: 84  SKYGVVVMEESTGKVEKFVE-----KPKLFVGNKINAGIYLLNPAVLDRI 128
             YG VV+E   G+V+K VE     + +L +   +NAG+YL +  +L+  
Sbjct: 132 KGYGRVVIEN--GQVKKIVEQKDANEEELKI-KSVNAGVYLFDRKLLEEY 178

Length = 430

>gnl|CDD|234265 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 240
            S  +  G  I+   +++   +IG+  +I     V   CV+   V ++   T+  GV I 
Sbjct: 89  PSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIG 148

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILG 269
           +        IG  +T+ Q   +    ++G
Sbjct: 149 EGV-----FIGAGATIIQGVTIGAGAVVG 172

This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. Length = 193

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 201 SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG 236
              IGE  LIGP+V +G G ++   V +    V+ G
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|189409 pfam00132, Hexapep, Bacterial transferase hexapeptide (six repeats)

 Score = 34.3 bits (80), Expect = 0.003
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 230
             ++ E+  IG   +IG  V +G   ++ +GV +  
Sbjct: 1   GTVIGENVLIGPNVVIGGGVIIGDNVIIGAGVVIGG 36

Length = 36

>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 55/264 (20%), Positives = 94/264 (35%), Gaps = 84/264 (31%)

Query: 48  VLNSDVISEYPFAEMIEFHKAHGGEASI--MVTKVDEPSKYGVVVMEESTGKVEKFVEKP 105
           +L  D I +  ++ M+  H   G + ++  +    +E S +GV+ ++E+  ++  FVEKP
Sbjct: 134 ILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN-DRITAFVEKP 192

Query: 106 KL---FVGNKINA----GIYLLNPAVLDRIELR----PTS---IEKEVFPKIALEGKL-- 149
                  G+   +    GIY+ N   L  +       P S     K++ PKI  EGK+  
Sbjct: 193 ANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYA 252

Query: 150 --FAMVL-------PGFWMDIGQPRDY------ITG----LRLY---------------- 174
             F+            +W D+G    Y      +      L LY                
Sbjct: 253 HPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPA 312

Query: 175 -------------LDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV 221
                        ++SL       ++ G  I G V+           ++   V V     
Sbjct: 313 KFVFDRSGRRGMAINSL-------VSGGCIISGAVVRR--------SVLFSRVRVNSFSN 357

Query: 222 VESGVRLSRCTVMRGVRIKKHACI 245
           VE  V L    V R  R+++  C+
Sbjct: 358 VEDSVLLPDVNVGRSCRLRR--CV 379

Length = 425

>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 8   FEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK 67
            +    IK + + +         L LARD L     E F +L  DV+ +     ++E   
Sbjct: 62  LKKYPNIKFVYNPDYAETNNIYSLYLARDFL----DEDFLLLEGDVVFDP---SILERLL 114

Query: 68  AHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA---GIYLLNPAV 124
           +   + +I+V K  +  +   V   +  G +   + K K     +I     GI   +P  
Sbjct: 115 SSPADNAILVDKKTKEWEDEYVKDLDDAGVLLGIISKAK--NLEEIQGEYVGISKFSPED 172

Query: 125 LDRI-----ELRPTSIEK----EVFPKIALEGKLFAMVLP-GFWMDIGQPRDY 167
            DR+     EL           +   ++  E  +    +  GFW +I    D 
Sbjct: 173 ADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWYEIDDLEDL 225

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP-Cho to either lipoteichoic acid or lipopolysaccharide. Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	302
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	100.0
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	100.0
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	100.0
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	100.0
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	100.0
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	100.0
PLN02241	436	glucose-1-phosphate adenylyltransferase	100.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	100.0
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	100.0
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	100.0
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	100.0
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	100.0
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	99.98
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.97
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.96
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.95
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.95
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	99.94
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	99.94
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	99.92
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	99.92
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	99.92
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	99.92
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	99.91
PRK10122	297	GalU regulator GalF; Provisional	99.91
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	99.91
PRK13389	302	UTP--glucose-1-phosphate uridylyltransferase subun	99.89
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	99.88
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	99.87
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	99.86
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	99.86
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	99.85
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	99.85
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	99.85
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	99.84
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	99.84
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.82
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.71
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.71
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.71
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.7
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.69
PRK13627	196	carnitine operon protein CaiE; Provisional	99.68
PLN02296	269	carbonate dehydratase	99.68
PLN02472	246	uncharacterized protein	99.67
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.66
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	99.65
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.65
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.64
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.62
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.61
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.6
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.6
cd05636	163	LbH_G1P_TT_C_like Putative glucose-1-phosphate thy	99.59
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.59
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	99.57
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.57
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.57
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.57
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.57
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	99.56
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.56
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.56
cd03351	254	LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltr	99.56
cd04197	217	eIF-2B_epsilon_N The N-terminal domain of epsilon	99.56
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.56
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	99.56
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.56
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	99.55
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.55
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.55
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.54
TIGR01852	254	lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-ac	99.53
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.53
KOG1461	673	consensus Translation initiation factor 2B, epsilo	99.53
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	99.53
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.52
PRK05289	262	UDP-N-acetylglucosamine acyltransferase; Provision	99.52
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	99.51
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.51
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.5
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.5
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.49
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	99.49
cd03350	139	LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-d	99.49
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.48
cd03360	197	LbH_AT_putative Putative Acyltransferase (AT), Lef	99.48
PRK12461	255	UDP-N-acetylglucosamine acyltransferase; Provision	99.48
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	99.48
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.48
TIGR00965	269	dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate	99.47
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.46
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	99.45
cd04745	155	LbH_paaY_like paaY-like: This group is composed by	99.45
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	99.43
cd03353	193	LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyl	99.43
TIGR02287	192	PaaY phenylacetic acid degradation protein PaaY. M	99.41
TIGR03532	231	DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxyla	99.4
PRK13627	196	carnitine operon protein CaiE; Provisional	99.4
TIGR03308	204	phn_thr-fam phosphonate metabolim protein, transfe	99.39
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.39
cd04646	164	LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynact	99.39
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	99.39
cd03358	119	LbH_WxcM_N_like WcxM-like, Left-handed parallel be	99.37
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.36
cd03352	205	LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferas	99.36
PLN02296	269	carbonate dehydratase	99.35
cd04650	154	LbH_FBP Ferripyochelin Binding Protein (FBP): FBP	99.35
PRK10502	182	putative acyl transferase; Provisional	99.35
cd05787	79	LbH_eIF2B_epsilon eIF-2B epsilon subunit, central	99.34
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	99.33
cd04645	153	LbH_gamma_CA_like Gamma carbonic anhydrase-like: T	99.33
cd00710	167	LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbo	99.33
PRK11830	272	dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-	99.32
cd03356	79	LbH_G1P_AT_C_like Left-handed parallel beta-Helix	99.32
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	99.32
cd05635	101	LbH_unknown Uncharacterized proteins, Left-handed	99.31
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	99.31
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.3
COG1043	260	LpxA Acyl-[acyl carrier protein]	99.3
cd03359	161	LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynact	99.29
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	99.29
PLN02472	246	uncharacterized protein	99.29
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	99.29
cd04652	81	LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal	99.29
cd04651	104	LbH_G1P_AT_C Glucose-1-phosphate adenylyltransfera	99.28
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.28
COG0663	176	PaaY Carbonic anhydrases/acetyltransferases, isole	99.28
KOG1462	433	consensus Translation initiation factor 2B, gamma	99.26
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	99.25
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	99.25
PRK11132	273	cysE serine acetyltransferase; Provisional	99.25
PLN02694	294	serine O-acetyltransferase	99.24
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	99.24
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	99.23
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.23
PRK10092	183	maltose O-acetyltransferase; Provisional	99.22
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	99.22
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	99.21
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.21
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	99.21
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	99.21
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	99.21
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	99.2
cd04649	147	LbH_THP_succinylT_putative Putative 2,3,4,5-tetrah	99.19
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	99.18
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	99.17
COG0836	333	{ManC} Mannose-1-phosphate guanylyltransferase [Ce	99.16
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.16
cd05824	80	LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltr	99.16
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	99.16
COG0448	393	GlgC ADP-glucose pyrophosphorylase [Carbohydrate t	99.15
cd02507	216	eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma	99.15
TIGR01172	162	cysE serine O-acetyltransferase. Cysteine biosynth	99.12
PLN02357	360	serine acetyltransferase	99.11
PRK10191	146	putative acyl transferase; Provisional	99.1
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	99.09
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	99.07
PRK00844	407	glgC glucose-1-phosphate adenylyltransferase; Prov	99.05
PLN02739	355	serine acetyltransferase	99.03
PLN02694	294	serine O-acetyltransferase	99.03
TIGR03535	319	DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarbo	99.03
TIGR02091	361	glgC glucose-1-phosphate adenylyltransferase. This	99.02
PRK10092	183	maltose O-acetyltransferase; Provisional	99.02
PRK10191	146	putative acyl transferase; Provisional	99.02
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	99.01
cd00208	78	LbetaH Left-handed parallel beta-Helix (LbetaH or	99.0
PRK09527	203	lacA galactoside O-acetyltransferase; Reviewed	99.0
PRK02862	429	glgC glucose-1-phosphate adenylyltransferase; Prov	98.99
cd03354	101	LbH_SAT Serine acetyltransferase (SAT): SAT cataly	98.99
PRK11132	273	cysE serine acetyltransferase; Provisional	98.97
PRK00725	425	glgC glucose-1-phosphate adenylyltransferase; Prov	98.96
cd03357	169	LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and	98.96
PLN02739	355	serine acetyltransferase	98.95
TIGR02092	369	glgD glucose-1-phosphate adenylyltransferase, GlgD	98.93
TIGR03536	341	DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxyl	98.91
cd05825	107	LbH_wcaF_like wcaF-like: This group is composed of	98.91
PLN02917	293	CMP-KDO synthetase	98.91
PLN02357	360	serine acetyltransferase	98.9
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.88
PRK10502	182	putative acyl transferase; Provisional	98.88
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	98.88
KOG3121	184	consensus Dynactin, subunit p25 [Cytoskeleton]	98.88
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.87
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.87
cd04647	109	LbH_MAT_like Maltose O-acyltransferase (MAT)-like:	98.86
PRK09677	192	putative lipopolysaccharide biosynthesis O-acetyl	98.85
COG2171	271	DapD Tetrahydrodipicolinate N-succinyltransferase	98.82
PLN02241	436	glucose-1-phosphate adenylyltransferase	98.81
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.72
COG1045	194	CysE Serine acetyltransferase [Amino acid transpor	98.61
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	98.6
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.59
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.58
TIGR02353	695	NRPS_term_dom non-ribosomal peptide synthetase ter	98.57
KOG4042	190	consensus Dynactin subunit p27/WS-3, involved in t	98.54
KOG1460	407	consensus GDP-mannose pyrophosphorylase [Carbohydr	98.52
cd03349	145	LbH_XAT Xenobiotic acyltransferase (XAT): The XAT	98.41
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	98.36
KOG1322	371	consensus GDP-mannose pyrophosphorylase/mannose-1-	98.34
COG0110	190	WbbJ Acetyltransferase (isoleucine patch superfami	98.18
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	98.07
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.93
COG4801	277	Predicted acyltransferase [General function predic	97.87
COG4801	277	Predicted acyltransferase [General function predic	97.84
PF00132	36	Hexapep: Bacterial transferase hexapeptide (six re	97.83
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	97.82
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	97.76
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	97.76
KOG4750	269	consensus Serine O-acetyltransferase [Amino acid t	97.68
PF14602	34	Hexapep_2: Hexapeptide repeat of succinyl-transfer	97.55
COG1212	247	KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase	97.25
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	97.07
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	96.96
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	96.6
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	96.6
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	96.27
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	95.74
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	94.82
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	93.66
PF07959	414	Fucokinase: L-fucokinase; InterPro: IPR012887 In t	93.35
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	92.88
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	92.69
COG2068	199	Uncharacterized MobA-related protein [General func	91.72
cd04180	266	UGPase_euk_like Eukaryotic UGPase-like includes UD	91.32
PLN02474	469	UTP--glucose-1-phosphate uridylyltransferase	90.95
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	89.83
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	88.5
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	88.3
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	88.26
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	87.05
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	84.97
PRK00560	196	molybdopterin-guanine dinucleotide biosynthesis pr	84.32
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	83.9
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	82.08
COG2266	177	GTP:adenosylcobinamide-phosphate guanylyltransfera	82.03
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	80.51
COG1083	228	NeuA CMP-N-acetylneuraminic acid synthetase [Cell	80.44
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	80.38
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	80.33

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.7e-55  Score=368.32  Aligned_cols=301  Identities=57%  Similarity=0.956  Sum_probs=287.7

Q ss_pred             hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      +++.+.++.++|++|.++.|.+++||++.+..|++++..+.+.+|+|++||+++++++++|+++|++++++.|+++.+.+
T Consensus        71 ~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd  150 (371)
T KOG1322|consen   71 RHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD  150 (371)
T ss_pred             HHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence            35667778889999999999999999999999999998765568999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEec
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  161 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~di  161 (302)
                      +|++||++..|+++|+|.+|.|||+...++.+++|+|+|+|++++.+.....++..|++|.++...++++|.++|||+|+
T Consensus       151 epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDI  230 (371)
T KOG1322|consen  151 EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDI  230 (371)
T ss_pred             CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhc
Confidence            99999999999878999999999998778899999999999999999888888999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECC
Q 022113          162 GQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  241 (302)
Q Consensus       162 gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  241 (302)
                      |+|++|+.+...+++.++...+.++.+++.+.+++++++.+.+|++|.|+++++||++|+|++++.|.+|.|+.+..++.
T Consensus       231 Gqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~  310 (371)
T KOG1322|consen  231 GQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYET  310 (371)
T ss_pred             CCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceech
Confidence            99999999999999999888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccccccccCCcccC
Q 022113          242 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM  302 (302)
Q Consensus       242 ~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~~~~~~~~~~~  302 (302)
                      ++.+..++++.++.||.|++|.+.++||+++.|.+.-.+..+.++|+|++..+++||.++|
T Consensus       311 ~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~  371 (371)
T KOG1322|consen  311 HSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM  371 (371)
T ss_pred             hHHHHhhhccccccccCceEEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999987

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-43  Score=315.67  Aligned_cols=279  Identities=36%  Similarity=0.617  Sum_probs=239.5

Q ss_pred             hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      ++|+++ +..++++|+|+.|.+++|||++|++|++++..   ++|++++||++++.|+.+++++|+++.+..++++.+..
T Consensus        62 ~~~~~d-~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~  137 (358)
T COG1208          62 EEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL  137 (358)
T ss_pred             HHHHhc-ccccCCceEEEecCCcCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence            445555 44578999999999999999999999999975   79999999999999999999999998888889898888


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccC-CCCCccccchHHHHhcCc-EEEEEecCe
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIEL-RPTSIEKEVFPKIALEGK-LFAMVLPGF  157 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~~~~~~~l~~~~~-v~~~~~~g~  157 (302)
                      ++..||.+..++.++++.+|.|||.  ...++++++|+|+|++++|+.++. ...++..++++.+++++. ++++.++|+
T Consensus       138 ~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~  217 (358)
T COG1208         138 DPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGY  217 (358)
T ss_pred             CCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCe
Confidence            8889999998853469999999994  456789999999999999997764 345666679999999987 999999999


Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccc-------cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLK-------LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR  230 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~-------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~  230 (302)
                      |+|+|+|++|+++++.+++.........       ... +.+.+++++++++.|+.++.|+++++||++|.|++++.|.+
T Consensus       218 W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~  296 (358)
T COG1208         218 WLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN  296 (358)
T ss_pred             EEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe
Confidence            9999999999999998876433222111       222 78899999999999999999999999999999999999999


Q ss_pred             eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcccc
Q 022113          231 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  292 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~  292 (302)
                      |+|+++|.|++++++.+|+|+++|.||+..      .+++ +.++.++.+.++++++++.+.
T Consensus       297 Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~~~~  351 (358)
T COG1208         297 SIIMDNVVIGHGSYIGDSIIGENCKIGASL------IIGD-VVIGINSEILPGVVVGPGSVV  351 (358)
T ss_pred             eEEEcCCEECCCCEEeeeEEcCCcEECCce------eecc-eEecCceEEcCceEeCCCccc
Confidence            999999999999999999999999999922      2777 777777777777777766544

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.3e-43  Score=289.75  Aligned_cols=300  Identities=37%  Similarity=0.692  Sum_probs=267.7

Q ss_pred             hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      .+|+..+...+.+.|+|..|..++|||++|+..++.+.....+.+.++++|.-+++++++|++.|+.++..+|+++.+..
T Consensus        66 ~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs  145 (407)
T KOG1460|consen   66 TDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVS  145 (407)
T ss_pred             HHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEec
Confidence            46778888889999999999999999999999999997666689999999999999999999999999999999998874


Q ss_pred             --CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccC----C-------------------CCCcc
Q 022113           82 --EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL----R-------------------PTSIE  136 (302)
Q Consensus        82 --~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~----~-------------------~~~~~  136 (302)
                        +...||.+.-|+++++++.+.|||..+.++.+++|+|+|++++|+.+..    +                   .-.++
T Consensus       146 ~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLe  225 (407)
T KOG1460|consen  146 REQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLE  225 (407)
T ss_pred             HhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEee
Confidence              5578999999988999999999999999999999999999999976631    0                   01234


Q ss_pred             ccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhccccccccccC----ceEecceEEcCCcEECCCCEECC
Q 022113          137 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATG----ANIVGNVLVHESAQIGEGCLIGP  212 (302)
Q Consensus       137 ~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~----~~i~~~~~i~~~~~i~~~~~i~~  212 (302)
                      .+++..++..+++++|.-+++|..+.|+-+-+.+++.++...+....+++.++    +.|.++++|+|+++|.+.+.|||
T Consensus       226 qDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGP  305 (407)
T KOG1460|consen  226 QDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGP  305 (407)
T ss_pred             chhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCC
Confidence            55677788889999999999999999999999999999887776666666533    56999999999999999999999


Q ss_pred             CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEcc-------------CcEECCCcEECCceE
Q 022113          213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIY  279 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-------------~~~i~~~~~v~~~~~  279 (302)
                      |+.||.+++||++++|.+|+|.++|.|.+|+++-+|++|.++.||.|+++..             -++.|+.+.+.+.+.
T Consensus       306 NVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~  385 (407)
T KOG1460|consen  306 NVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVI  385 (407)
T ss_pred             CceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeE
Confidence            9999999999999999999999999999999999999999999999999841             278899999999999


Q ss_pred             EcCCeEecCccccccccCCcccC
Q 022113          280 SNGGVVLPHKEIKSSILKPEIVM  302 (302)
Q Consensus       280 v~~~~v~~~~~~~~~~~~~~~~~  302 (302)
                      +.+..++|.+++.++ ++++|+|
T Consensus       386 v~~s~vlp~k~l~vs-~~~eIil  407 (407)
T KOG1460|consen  386 VLNSIVLPNKELNVS-VQDEIIL  407 (407)
T ss_pred             EeeeeEecCCcccee-eecceeC
Confidence            999889999999999 8999987

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=3.2e-38  Score=287.69  Aligned_cols=276  Identities=24%  Similarity=0.341  Sum_probs=196.5

Q ss_pred             hhHHHHHhhcCCc-------EEE--EEecCC---CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHc
Q 022113            2 LNFLKEFEAKLGI-------KII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH   69 (302)
Q Consensus         2 ~~~~~~~~~~~g~-------~i~--~~~~~~---~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~   69 (302)
                      ++|+++ +++|++       .+.  |..|.+   ++|||+||++|++++....+++|+|++||++++.|+.++++.|.++
T Consensus        65 ~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~  143 (380)
T PRK05293         65 NNHIGI-GSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK  143 (380)
T ss_pred             HHHHhC-CCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc
Confidence            345544 455663       333  555544   5999999999999995322368999999999999999999999988


Q ss_pred             CCcEEEEEEeC--CCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhh-ccC------CCCCccccch
Q 022113           70 GGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDR-IEL------RPTSIEKEVF  140 (302)
Q Consensus        70 ~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~-l~~------~~~~~~~~~~  140 (302)
                      ++++++++...  +++..||.+.+|+ +++|++|.|||..+..++.++|+|+|++++|.. ++.      ...++..+++
T Consensus       144 ~~~~tl~~~~~~~~~~~~yG~v~~d~-~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i  222 (380)
T PRK05293        144 EADVTIAVIEVPWEEASRFGIMNTDE-NMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVI  222 (380)
T ss_pred             CCCEEEEEEEcchhhccccCEEEECC-CCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence            88888887655  4678899999985 689999999997666789999999999998843 332      1123345677


Q ss_pred             HHHHhc-CcEEEEEecCeeEecCChHHHHHHHHHHHHhhccc----------cccccccCceEecceEEcCCcEECCCCE
Q 022113          141 PKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK----------SSLKLATGANIVGNVLVHESAQIGEGCL  209 (302)
Q Consensus       141 ~~l~~~-~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~  209 (302)
                      +.++++ .++.++..+++|.|+|++++|++++..++......          ..+.+.+.+.|++.+.| .++.||++|.
T Consensus       223 ~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~  301 (380)
T PRK05293        223 PLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCV  301 (380)
T ss_pred             HHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCE
Confidence            777765 57999999999999999999999987665432110          01112223333333333 2345555665


Q ss_pred             ECC---CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccC----cEECCCcEECCceEE
Q 022113          210 IGP---DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYS  280 (302)
Q Consensus       210 i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~----~~i~~~~~v~~~~~v  280 (302)
                      |++   +|+||++|.|+++|.|.+|+|+++|.|+++|+|.+|++++++.|++++++.++    ++||++++|.+++++
T Consensus       302 I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~  379 (380)
T PRK05293        302 VYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI  379 (380)
T ss_pred             EcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence            542   46777777777777777777777777777777777777777777777777553    556666666666554

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.4e-38  Score=274.46  Aligned_cols=253  Identities=25%  Similarity=0.418  Sum_probs=176.0

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEE
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKF  101 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~  101 (302)
                      -.|||+|+++.+.++.+...+.+++++||+++++|+++|+++|.+.++++|+.+.+++  +++.||++.+|+ ++++++|
T Consensus       100 y~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~-~~~i~~F  178 (393)
T COG0448         100 YEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDE-NGRIIEF  178 (393)
T ss_pred             eeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECC-CCCEEee
Confidence            4689999999999987655688999999999999999999999999999999999986  567899999997 8999999


Q ss_pred             EecCCC-CCCC-eEEEEEEEeCHhhHhh-cc------CCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113          102 VEKPKL-FVGN-KINAGIYLLNPAVLDR-IE------LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       102 ~ekp~~-~~~~-~~~~Giy~~~~~~l~~-l~------~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                      .|||.. +..+ +.++|+|+|++++|.. |+      .+..++..++++.+.+++++++|.++|||.|+||.++|++|+.
T Consensus       179 ~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNm  258 (393)
T COG0448         179 VEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANM  258 (393)
T ss_pred             eeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhH
Confidence            999988 4443 8999999999998854 43      2234677888999999999999999999999999999999999


Q ss_pred             HHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC
Q 022113          173 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW  252 (302)
Q Consensus       173 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~  252 (302)
                      .+++....  -.-+.+++.|......-|.+.+..++.+ .++.|+.+|+|..  .|.+|+++.+++|+++|+|.+|+|..
T Consensus       259 dLl~~~~~--~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~  333 (393)
T COG0448         259 DLLSPQPE--LNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMP  333 (393)
T ss_pred             HhcCCCCc--ccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeC
Confidence            88762111  1123344444433333333333333333 2444444444433  44444444444444444444444444


Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      +|.||.+|+| ..++|.++|+|++|++++..
T Consensus       334 ~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~  363 (393)
T COG0448         334 DVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD  363 (393)
T ss_pred             CcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence            4444444444 33444444444444444433

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=100.00  E-value=6e-37  Score=276.56  Aligned_cols=277  Identities=26%  Similarity=0.428  Sum_probs=217.5

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +++++ +..|++++.|+.|++++||++++++|++++.+   ++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus        62 ~~~~~-~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~  137 (353)
T TIGR01208        62 EIVGE-GERFGAKITYIVQGEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD  137 (353)
T ss_pred             HHHhc-ccccCceEEEEECCCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence            34444 35688999999998899999999999999854   689999999999999999999999989999999988888


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcC-cEEEEEecC
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEG-KLFAMVLPG  156 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~-~v~~~~~~g  156 (302)
                      +..||++.+++ ++++..|.|||..+.+.+.++|+|+|++.+++.++....     ....++++.+++++ ++.+|.+++
T Consensus       138 ~~~~g~~~~~~-~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g  216 (353)
T TIGR01208       138 PTAFGVAVLED-GKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTG  216 (353)
T ss_pred             hhhCeEEEEcC-CCcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCc
Confidence            88899988864 578999999998777789999999999988887743211     11245677777664 799999999


Q ss_pred             eeEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEcc
Q 022113          157 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR  235 (302)
Q Consensus       157 ~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~  235 (302)
                      +|.|+++|++|++++..+++....... .+.+++.+.+++++++++.| .++.|.++++||++|.|+. +.|. +|+|++
T Consensus       217 ~w~digt~~dl~~a~~~ll~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~-~~i~~~~~Ig~  293 (353)
T TIGR01208       217 WWKDTGKPEDLLDANRLILDEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIEN-SYIGPYTSIGE  293 (353)
T ss_pred             EEEeCCCHHHHHHHHHHHHhhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcC-cEECCCCEECC
Confidence            999999999999999988875433221 14556777778888888888 6777777777777777764 3443 677777


Q ss_pred             CCEECCCcEEeccEECCCCEECCCc-EEccCcEECCCcEECCceEEcCC--eEecCc
Q 022113          236 GVRIKKHACISSSIIGWHSTVGQWA-RVENMTILGEDVHVCDEIYSNGG--VVLPHK  289 (302)
Q Consensus       236 ~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~~i~~~~~v~~~~~v~~~--~v~~~~  289 (302)
                      +|.|+ ++.|.+|+|++++.|+.++ .+ .+++|+++++|++++.+...  .+++.+
T Consensus       294 ~~~i~-~~~i~~s~i~~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~~~~~~g~~  348 (353)
T TIGR01208       294 GVVIR-DAEVEHSIVLDESVIEGVQARI-VDSVIGKKVRIKGNRRRPGDLRLTIGDY  348 (353)
T ss_pred             CCEEe-eeEEEeeEEcCCCEEcCCccee-ecCEEcCCCEECCCcccccccceEEcCC
Confidence            77776 5777788888888888774 66 56888888888888777642  345543

Alternate name: dTDP-D-glucose synthase

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=6.8e-36  Score=260.76  Aligned_cols=264  Identities=24%  Similarity=0.356  Sum_probs=218.6

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      ++.|+.|.+|+|||||+.+|++++.++-++++||++||+ |.. ..|+++++.|.+..+.++++.+..++|..||.+..+
T Consensus        68 ~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~  147 (460)
T COG1207          68 DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRD  147 (460)
T ss_pred             CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEc
Confidence            599999999999999999999999544346899999999 554 558999999999999999999999999999999998


Q ss_pred             CCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhH-hhccC-CCCCccccchHH----HHh--cCcEEEEEecCe--e
Q 022113           93 ESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL-RPTSIEKEVFPK----IAL--EGKLFAMVLPGF--W  158 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l-~~l~~-~~~~~~~~~~~~----l~~--~~~v~~~~~~g~--~  158 (302)
                      + +++|..+.|.-+.    ..-..+|+|+|+|+...| +.|+. +....+.|+|..    ++.  ..++.++..+.+  .
T Consensus       148 ~-~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~  226 (460)
T COG1207         148 G-NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEV  226 (460)
T ss_pred             C-CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHh
Confidence            6 7899999986432    245789999999997744 55542 344556777653    222  257788877754  5


Q ss_pred             EecCChHHHHHHHHHHHHhhcc-----ccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRK-----KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                      ..+++...+.++++.++.+..+     ...-.-+...+|++++.+++++.|.+++.|.+++.||++|+||++|+|.+|.|
T Consensus       227 ~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I  306 (460)
T COG1207         227 LGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVI  306 (460)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEE
Confidence            7999999999999888765443     22222344567888999999999999999999999999999999999999999


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceE
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIY  279 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~  279 (302)
                      ++++.|.+++++++|.+++++.||++++++|++.++++++||..+.
T Consensus       307 ~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVE  352 (460)
T COG1207         307 GDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVE  352 (460)
T ss_pred             cCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEE
Confidence            9999999999999999999999999999999999999999988544

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=8.5e-36  Score=275.37  Aligned_cols=256  Identities=21%  Similarity=0.342  Sum_probs=199.8

Q ss_pred             CCCCChHHHHHcHhhhccCC---CCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCc
Q 022113           23 EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGK   97 (302)
Q Consensus        23 ~~~Gt~~al~~a~~~i~~~~---~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~   97 (302)
                      .++|||+|+++++.++.+..   +++|++++||++++.|+.+++++|+++++++|+++.+.+  ++..||++.+|+ +++
T Consensus        99 ~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~-~~~  177 (436)
T PLN02241         99 WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDD-TGR  177 (436)
T ss_pred             cccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECC-CCC
Confidence            47999999999998775321   378999999999999999999999999999999988775  467899999975 789


Q ss_pred             EEEEEecCCCCC---------------------CCeEEEEEEEeCHhhHhhc-cC---CCCCccccchHHHHhc-CcEEE
Q 022113           98 VEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEKEVFPKIALE-GKLFA  151 (302)
Q Consensus        98 v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~~~~l~~~-~~v~~  151 (302)
                      +++|.|||..+.                     .+++++|+|+|++++|..+ +.   ...++..++++.++++ .++++
T Consensus       178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~  257 (436)
T PLN02241        178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA  257 (436)
T ss_pred             EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence            999999996532                     3689999999999999544 31   1224556778888877 58999


Q ss_pred             EEecCeeEecCChHHHHHHHHHHHHhhcc------c----------cccccccCceEecceEEcCCcEECCCCEECCCcE
Q 022113          152 MVLPGFWMDIGQPRDYITGLRLYLDSLRK------K----------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVA  215 (302)
Q Consensus       152 ~~~~g~~~digt~~~~~~a~~~~l~~~~~------~----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~  215 (302)
                      |.++|||.|+++|++|++++..+++....      .          .++.+ .++.+.+ ++|+++|.|+ +|.|. +++
T Consensus       258 ~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~sv  333 (436)
T PLN02241        258 YLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSV  333 (436)
T ss_pred             EeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeE
Confidence            99999999999999999999988753210      0          01111 3444544 7899999999 99995 789


Q ss_pred             ECCCCEECCCcEEeceEEccC-------------------CEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          216 VGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       216 ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      |+++|.|+++|.|.+|+++..                   +.|+++|.+++++|+++++||+++.|....-+.+..++|+
T Consensus       334 I~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~  413 (436)
T PLN02241        334 VGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEE  413 (436)
T ss_pred             EcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCcccccc
Confidence            999999999999999988762                   3899999999999999999999999974433333333333


Q ss_pred             ceEEcCC
Q 022113          277 EIYSNGG  283 (302)
Q Consensus       277 ~~~v~~~  283 (302)
                      +++++++
T Consensus       414 ~~~~~~~  420 (436)
T PLN02241        414 GYYIRSG  420 (436)
T ss_pred             ccEEeCC
Confidence            3333333

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.8e-35  Score=272.59  Aligned_cols=259  Identities=22%  Similarity=0.366  Sum_probs=199.7

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEEE
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFV  102 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~~  102 (302)
                      +|||+|++++++++.....++|+|++||+++++|+.++++.|+++++++|+++.+.+  ++..||++.+|+ ++++..|.
T Consensus        98 lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~-~g~V~~~~  176 (429)
T PRK02862         98 QGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDD-DGRITEFS  176 (429)
T ss_pred             cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECC-CCcEEEEE
Confidence            899999999999986432368999999999999999999999998889999887653  577899999986 78999999


Q ss_pred             ecCCCC---------------------CCCeEEEEEEEeCHhhHhhc-cCC--CCCccccchHHHHhcCcEEEEEecCee
Q 022113          103 EKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIALEGKLFAMVLPGFW  158 (302)
Q Consensus       103 ekp~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~~--~~~~~~~~~~~l~~~~~v~~~~~~g~~  158 (302)
                      |||...                     ...++++|+|+|++++|..+ +..  ..++..++++.+++++++.+|.++++|
T Consensus       177 Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~~v~~~~~~g~w  256 (429)
T PRK02862        177 EKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYLFDGYW  256 (429)
T ss_pred             ECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccCcEEEEEeCCEE
Confidence            999632                     13589999999999999644 332  234556888888888999999999999


Q ss_pred             EecCChHHHHHHHHHHHHhhcc-----------------ccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRK-----------------KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV  221 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~-----------------~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~  221 (302)
                      .|+|+|++|+++++.++.....                 ..++.+ .++.+. +++|+++|.| ++|.|. +|+|+++|.
T Consensus       257 ~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~  332 (429)
T PRK02862        257 EDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSR  332 (429)
T ss_pred             EeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcE
Confidence            9999999999999887622111                 011122 133443 4688888888 788885 789999999


Q ss_pred             ECCCcEEeceEEcc-------------------CCEECCCcEEeccEECCCCEECCCcEEccCcEECC------CcEECC
Q 022113          222 VESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVENMTILGE------DVHVCD  276 (302)
Q Consensus       222 i~~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~------~~~v~~  276 (302)
                      ||++|.|.+|+|++                   ++.||++|.|.+|+++++|.||+++++.+...+.+      +++++.
T Consensus       333 Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (429)
T PRK02862        333 IESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD  412 (429)
T ss_pred             ECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeC
Confidence            99999999999876                   68899999999999999999999998864443333      444444


Q ss_pred             c-eEEcCCeEecC
Q 022113          277 E-IYSNGGVVLPH  288 (302)
Q Consensus       277 ~-~~v~~~~v~~~  288 (302)
                      | ++|..++++++
T Consensus       413 ~~~~~~~~~~~~~  425 (429)
T PRK02862        413 GIVVVVKNAVIPD  425 (429)
T ss_pred             CEEEEcCCcCCCC
Confidence            4 33444444443

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=1.7e-35  Score=271.32  Aligned_cols=236  Identities=22%  Similarity=0.419  Sum_probs=161.0

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--CCCCCcceEEEeCCCCcEEEE
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKF  101 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v~~~  101 (302)
                      ++|||+||++|++++.++..++|+|++||++++.|+.+++++|+++++++|+++.+.  +++..||++.+|+ +++++.|
T Consensus        98 ~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~-~g~v~~~  176 (407)
T PRK00844         98 YLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDP-DGRIRGF  176 (407)
T ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECC-CCCEEEE
Confidence            699999999999999642224599999999999999999999999888888888654  4678899999986 6899999


Q ss_pred             EecCCCCC-------CCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEe------------c
Q 022113          102 VEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL------------P  155 (302)
Q Consensus       102 ~ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~------------~  155 (302)
                      .|||..+.       ..++++|+|+|++++| +.|+.      ...++..++++.+++++++.+|.+            +
T Consensus       177 ~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~  256 (407)
T PRK00844        177 LEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDR  256 (407)
T ss_pred             EECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcccccccccccCCC
Confidence            99996432       4689999999999986 55542      234566788999998889999866            5


Q ss_pred             CeeEecCChHHHHHHHHHHHHhhccc----------------cccccccCc---eEecceEEcCCcEECCCCEECCCcEE
Q 022113          156 GFWMDIGQPRDYITGLRLYLDSLRKK----------------SSLKLATGA---NIVGNVLVHESAQIGEGCLIGPDVAV  216 (302)
Q Consensus       156 g~~~digt~~~~~~a~~~~l~~~~~~----------------~~~~~~~~~---~i~~~~~i~~~~~i~~~~~i~~~~~i  216 (302)
                      |||.|+|+|++|+++++.+++.....                .++.+..+.   .+.++++++++|.|+ ++.|. +|+|
T Consensus       257 g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svI  334 (407)
T PRK00844        257 GYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVL  334 (407)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEE
Confidence            99999999999999999887532110                000010000   012234444444444 44443 3444


Q ss_pred             CCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          217 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       217 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      |++|.|+++|.|.+|+|+++|.|+++|+|.+|++++++.|++++++
T Consensus       335 g~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i  380 (407)
T PRK00844        335 SPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI  380 (407)
T ss_pred             CCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence            4444444444444444444444444444444444444444444444

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=100.00  E-value=3.8e-35  Score=270.04  Aligned_cols=255  Identities=22%  Similarity=0.343  Sum_probs=167.7

Q ss_pred             cCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--CCCCCcceEEEeCCCCcE
Q 022113           21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKV   98 (302)
Q Consensus        21 ~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v   98 (302)
                      |+.++|||+|+++|++++....+++|+|++||++++.|+.++++.|+++++++|+++.+.  +++..||++.+|+ ++++
T Consensus       107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~-~~~V  185 (425)
T PRK00725        107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDE-NDRI  185 (425)
T ss_pred             CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECC-CCCE
Confidence            344799999999999999643336899999999999999999999999999999888765  5678999999986 6899


Q ss_pred             EEEEecCCCC-------CCCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEec---------
Q 022113           99 EKFVEKPKLF-------VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVLP---------  155 (302)
Q Consensus        99 ~~~~ekp~~~-------~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~---------  155 (302)
                      +.|.|||..+       ...++++|+|+|++++| +.|+.      ...++..++++.+++++++.+|.++         
T Consensus       186 ~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~  265 (425)
T PRK00725        186 TAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPE  265 (425)
T ss_pred             EEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccc
Confidence            9999999643       24689999999999986 44532      1234556788889988999999885         


Q ss_pred             --CeeEecCChHHHHHHHHHHHHhhccc-c---ccccccCceEec-ceEEcCCcEECCC--CEECCCcEECCCCEECCCc
Q 022113          156 --GFWMDIGQPRDYITGLRLYLDSLRKK-S---SLKLATGANIVG-NVLVHESAQIGEG--CLIGPDVAVGPGCVVESGV  226 (302)
Q Consensus       156 --g~~~digt~~~~~~a~~~~l~~~~~~-~---~~~~~~~~~i~~-~~~i~~~~~i~~~--~~i~~~~~ig~~~~i~~~~  226 (302)
                        +||.|+|+|++|+++++.+++..... .   ...+.......+ ..++.    ++.+  +.+ .+++||++|.| +++
T Consensus       266 ~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~----~~~~~~~~~-~~s~i~~~~~i-~~~  339 (425)
T PRK00725        266 EEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVF----DRSGRRGMA-INSLVSGGCII-SGA  339 (425)
T ss_pred             cCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEec----cCCCCcceE-EeCEEcCCcEE-cCc
Confidence              69999999999999998876421100 0   000000000001 00000    0111  111 24455555555 345


Q ss_pred             EEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          227 RLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       227 ~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      .|.+|+|+++|.|+++|.|.+|+|+++|.|+++++| .+|+|+++++|+++++++.+
T Consensus       340 ~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~  395 (425)
T PRK00725        340 VVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGED  395 (425)
T ss_pred             cccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCC
Confidence            555555555555555555555555555555555555 33555555555555444433

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=100.00  E-value=6.9e-34  Score=257.50  Aligned_cols=252  Identities=22%  Similarity=0.373  Sum_probs=198.7

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEE
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKF  101 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~  101 (302)
                      ++||+++++++++++....+++|++++||++++.++.++++.|+++++++++++.+.+  ++..||++.+|+ ++++..|
T Consensus        92 ~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~  170 (361)
T TIGR02091        92 YQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIVDF  170 (361)
T ss_pred             ccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECC-CCCEEEE
Confidence            5899999999999985432368999999999999999999999888888888887653  567899999985 6899999


Q ss_pred             EecCCCCCCC-------eEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEecCeeEecCChHHH
Q 022113          102 VEKPKLFVGN-------KINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY  167 (302)
Q Consensus       102 ~ekp~~~~~~-------~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~  167 (302)
                      .|||..+...       ++++|+|+|++++| +.++.      ...++..++++.+++++++.+|.++++|.|++++++|
T Consensus       171 ~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~  250 (361)
T TIGR02091       171 EEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSF  250 (361)
T ss_pred             EECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHH
Confidence            9998655444       89999999999987 44442      1223445788889988999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccccCceEec-ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe
Q 022113          168 ITGLRLYLDSLRKKSSLKLATGANIVG-NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS  246 (302)
Q Consensus       168 ~~a~~~~l~~~~~~~~~~~~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~  246 (302)
                      ++++..++.......  .+.....+.+ ...+.+.+.|++++.+ ++++||++|.|+++ .+.+|+|+++|.|+++|+|.
T Consensus       251 ~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~  326 (361)
T TIGR02091       251 WEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVE  326 (361)
T ss_pred             HHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEe
Confidence            999988775332110  1111122211 2234455555666655 57788888888876 78899999999999999999


Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      +|++++++.|+.++++ .+++||++++|++++.++
T Consensus       327 ~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~  360 (361)
T TIGR02091       327 DSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG  360 (361)
T ss_pred             eeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence            9999999999999999 678999999999888775

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=9.1e-34  Score=264.26  Aligned_cols=262  Identities=22%  Similarity=0.375  Sum_probs=214.5

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.|..|++++||+++++++++++.+. .++|++++||+  +.+.+++++++.|.+.+.+++++..+.+++..||.+.+|
T Consensus        69 ~i~~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d  147 (459)
T PRK14355         69 DVSFALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRD  147 (459)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEc
Confidence            677888888999999999999998532 36899999998  456779999999988888888888888788889999888


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcC-cEEEEEecCe--e
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--W  158 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~g~--~  158 (302)
                      + ++++..+.|||...    ...++++|+|+|++++| +.++.      .......++++.+++++ ++.+|.++++  |
T Consensus       148 ~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~  226 (459)
T PRK14355        148 A-DGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEI  226 (459)
T ss_pred             C-CCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHh
Confidence            5 78999999986321    24688999999999864 44531      11112246778888775 6999999887  8


Q ss_pred             EecCChHHHHHHHHHHHHhhccc----cccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRKK----SSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~~----~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                      +|+++|++|+++++.++......    ....+++++ .|++++.|++++.|+++|.|+++++||++|.|+++|.|.+|+|
T Consensus       227 ~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~I  306 (459)
T PRK14355        227 MGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRI  306 (459)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEE
Confidence            99999999999987665543221    123455654 6888999999999999999999999999999999999999999


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI  278 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~  278 (302)
                      +++|.|++++++.++++++++.|++++++.+++.|+++++|+.++
T Consensus       307 g~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~  351 (459)
T PRK14355        307 GDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV  351 (459)
T ss_pred             cCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence            999999999999999999999999999998888888888877654

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=100.00  E-value=3.4e-34  Score=260.15  Aligned_cols=274  Identities=20%  Similarity=0.301  Sum_probs=198.5

Q ss_pred             hhHHHHHhhcCCcEE------EEEec-CCCC--CChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCc
Q 022113            2 LNFLKEFEAKLGIKI------ICSQE-TEPL--GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE   72 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i------~~~~~-~~~~--Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~   72 (302)
                      ++|+++ +..|++++      .+..| ++++  |+++++++|++++....+++|+|++||++++.|+.+++++|++++++
T Consensus        65 ~~~l~~-~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~  143 (369)
T TIGR02092        65 FDHLGS-GREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKD  143 (369)
T ss_pred             HHHHhC-CCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCC
Confidence            345554 44677664      23344 4454  45556889999885222368999999999999999999999999999


Q ss_pred             EEEEEEeCC--CCCCcc-eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHh-hcc----CCCCCccccchHHHH
Q 022113           73 ASIMVTKVD--EPSKYG-VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIE----LRPTSIEKEVFPKIA  144 (302)
Q Consensus        73 ~~l~~~~~~--~~~~~g-~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~----~~~~~~~~~~~~~l~  144 (302)
                      +|+++.+.+  ++..|| .+.+++ ++++..+.+++.......+++|+|+|++++|. .++    ........++++.++
T Consensus       144 ~tl~~~~v~~~~~~~~g~vv~~~~-~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~  222 (369)
T TIGR02092       144 ITVVYKKVKPADASEYDTILRFDE-SGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENL  222 (369)
T ss_pred             EEEEEEecCHHHccccCcEEEEcC-CCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHh
Confidence            999988765  567785 455664 57888775543322345789999999998763 332    222223346677777


Q ss_pred             hcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhcccccccc-ccCceEecceEEcCCcEECCCCEECCCcEECCCCEEC
Q 022113          145 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKL-ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVE  223 (302)
Q Consensus       145 ~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~  223 (302)
                      ++.+++++..+++|.|+|+|++|++++..+++......  .+ .....+.....+.+.+.|+++|.| ++|+||++|.|+
T Consensus       223 ~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~  299 (369)
T TIGR02092       223 KELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQS--LFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE  299 (369)
T ss_pred             ccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhh--hcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe
Confidence            77889999999999999999999999987765432110  01 111111111112355666677777 678888999997


Q ss_pred             CCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          224 SGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       224 ~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                        +.|.+|+|+++|.|+++|.|.+|++++++.|++++++ .+++|+++++|++++.+.+.
T Consensus       300 --~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~~~  356 (369)
T TIGR02092       300 --GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIAGT  356 (369)
T ss_pred             --eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeCCC
Confidence              3688999999999999999999999999999999999 56899999988888887554

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=3.8e-32  Score=254.63  Aligned_cols=262  Identities=21%  Similarity=0.251  Sum_probs=199.9

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      ..+.++.|++++||+++++++++++....+++|++++||+ ++ +.++.++++.|++.+.+++++..+..++..||.+..
T Consensus        70 ~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~  149 (482)
T PRK14352         70 PEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR  149 (482)
T ss_pred             CccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE
Confidence            3467788888999999999999988542336799999998 44 567999999998888778888888888889999888


Q ss_pred             eCCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhHhhc-c---CC---CCCccccchHHHHhcC-cEEEEEecCeeE
Q 022113           92 EESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVLDRI-E---LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWM  159 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~~l-~---~~---~~~~~~~~~~~l~~~~-~v~~~~~~g~~~  159 (302)
                      ++ ++++.+|.|||....    ..++++|+|+|++++|..+ +   ..   ......++++.+++++ ++.+|.++++|.
T Consensus       150 ~~-~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~  228 (482)
T PRK14352        150 DQ-DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAE  228 (482)
T ss_pred             CC-CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcce
Confidence            75 789999999987542    3578999999999988543 2   11   1122356777888775 799999999999


Q ss_pred             ecCChHHH------HHHHHHHHHhhcccccccccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceE
Q 022113          160 DIGQPRDY------ITGLRLYLDSLRKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCT  232 (302)
Q Consensus       160 digt~~~~------~~a~~~~l~~~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~  232 (302)
                      |+++++.+      ..+++.+++.........+++ .+.|.++++|++++.|++++.|.++++||++|.|+++|.|.+++
T Consensus       229 ~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~  308 (482)
T PRK14352        229 VAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVT  308 (482)
T ss_pred             EEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCE
Confidence            99998887      223333333332222223333 56788889999999999999998899999999999999998888


Q ss_pred             EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCc
Q 022113          233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE  277 (302)
Q Consensus       233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~  277 (302)
                      |+++|.|++ +.+.+++|++++.||+++.+.++++||++++++.+
T Consensus       309 Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~  352 (482)
T PRK14352        309 VGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF  352 (482)
T ss_pred             ECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence            888888864 67777888888888777777767777776666643

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=4.9e-31  Score=245.97  Aligned_cols=263  Identities=19%  Similarity=0.265  Sum_probs=203.9

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      .+++|+.|+.++||+++++.+++++.....+++++++||+ ++ +.+++++++.|+  +++++++..+.+++..||.+..
T Consensus        69 ~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~  146 (456)
T PRK14356         69 EDARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR  146 (456)
T ss_pred             cCceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE
Confidence            3567888888999999999999998542237899999999 44 556889998875  5568888888888889998876


Q ss_pred             eCCCCcEEEEEecCCC------CCCCeEEEEEEEeCHhhHhhc-cCC------CCCccccchHHHHhc-CcEEEEEecC-
Q 022113           92 EESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRI-ELR------PTSIEKEVFPKIALE-GKLFAMVLPG-  156 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l-~~~------~~~~~~~~~~~l~~~-~~v~~~~~~g-  156 (302)
                      +  ++++..|.|||..      +...++++|+|.|++++|..+ +.-      ......++++.+.+. .++.++...+ 
T Consensus       147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~  224 (456)
T PRK14356        147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGED  224 (456)
T ss_pred             c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCc
Confidence            4  6899999998753      235688999999999987544 211      111123455566554 4688888766 


Q ss_pred             -eeEecCChHHHHHHHHHHHHhhcccc---cccc--ccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec
Q 022113          157 -FWMDIGQPRDYITGLRLYLDSLRKKS---SLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR  230 (302)
Q Consensus       157 -~~~digt~~~~~~a~~~~l~~~~~~~---~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~  230 (302)
                       +|+++++|++|.+++..+........   ...+  .+++.+++++.+++++.|..+|.|+++++||++|.|+++|.|.+
T Consensus       225 ~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~  304 (456)
T PRK14356        225 PNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRD  304 (456)
T ss_pred             CeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEe
Confidence             57999999999998877765433211   1111  23466677777888888888888888899999999999999999


Q ss_pred             eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          231 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |+|+++|.|+++|.|.+++|++++.||++++|.++++|+++++|++++.+
T Consensus       305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i  354 (456)
T PRK14356        305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM  354 (456)
T ss_pred             eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence            99999999999999999999999999999999888999998888887544

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=100.00  E-value=5.2e-31  Score=246.26  Aligned_cols=266  Identities=20%  Similarity=0.309  Sum_probs=204.8

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      +..+.|+.|+.++||+++++++++++... +++|++++||+  +.+.+++++++.|.++++++++++.+.+++..||.+.
T Consensus        70 ~~~i~~v~~~~~~Gt~~al~~~~~~l~~~-~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~  148 (481)
T PRK14358         70 GSGVAFARQEQQLGTGDAFLSGASALTEG-DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIV  148 (481)
T ss_pred             cCCcEEecCCCcCCcHHHHHHHHHHhhCC-CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEE
Confidence            34578888888999999999999988532 25799999998  4567799999999988888998888888888899999


Q ss_pred             EeCCCCcEEEEEecCCCCC----CCeEEEEEEEeC---HhhHhhccCCC---CCccccchHHHHhcC-cEEEEEecCeeE
Q 022113           91 MEESTGKVEKFVEKPKLFV----GNKINAGIYLLN---PAVLDRIELRP---TSIEKEVFPKIALEG-KLFAMVLPGFWM  159 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~---~~~l~~l~~~~---~~~~~~~~~~l~~~~-~v~~~~~~g~~~  159 (302)
                      +|+ ++++.+|.|||....    .+++++|+|+|+   +++++.++...   .....++++.+++++ ++.+|.++++|.
T Consensus       149 ~d~-~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~  227 (481)
T PRK14358        149 RGA-DGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDE  227 (481)
T ss_pred             ECC-CCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHH
Confidence            986 689999999986432    357899999999   45566664321   122246777777775 689999988876


Q ss_pred             ecCChHHHHHH--HHHHHHhhcc----ccccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceE
Q 022113          160 DIGQPRDYITG--LRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCT  232 (302)
Q Consensus       160 digt~~~~~~a--~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~  232 (302)
                      .++.-..++.+  .+.+......    .....+.+.+ .+.+++.||+++.|+++|.|.++++||++|.|+++|.|.+|+
T Consensus       228 ~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~sv  307 (481)
T PRK14358        228 VLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSV  307 (481)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeE
Confidence            66554444222  2222222211    1111233333 357888899999999999999999999999999999999999


Q ss_pred             EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |+++|.|+++++|.++++++++.|++++.+.++++||+++++++++.+
T Consensus       308 I~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i  355 (481)
T PRK14358        308 LHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET  355 (481)
T ss_pred             ECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence            999999999999999999999999999999888888888888886553

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=100.00  E-value=2.4e-30  Score=241.19  Aligned_cols=260  Identities=22%  Similarity=0.339  Sum_probs=201.2

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      ++.++.+++++||+++++++++++..  +++|++++||+ + .+.++.++++.|.+.  ..++++.+.+++..||.+.++
T Consensus        65 ~i~~~~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d  140 (451)
T TIGR01173        65 DVNWVLQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIRE  140 (451)
T ss_pred             CcEEEEcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEc
Confidence            46677788889999999999999854  26899999998 4 456699999988664  367777777777789998887


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccCCC------CCccccchHHHHhcC-cEEEEEecCe--e
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIELRP------TSIEKEVFPKIALEG-KLFAMVLPGF--W  158 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~------~~~~~~~~~~l~~~~-~v~~~~~~g~--~  158 (302)
                      + ++++..|.|||...    ...++++|+|+|++++| +.++...      .....++++.+++++ ++.+|.++++  |
T Consensus       141 ~-~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~  219 (451)
T TIGR01173       141 N-DGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEV  219 (451)
T ss_pred             C-CCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhhe
Confidence            5 68999999997543    13478999999999985 4443211      111245677777765 6889989887  8


Q ss_pred             EecCChHHHHHHHHHHHHhhccc---cccc--cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRKK---SSLK--LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~~---~~~~--~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                      .++++|+++..++..+.......   ....  ....+.+.+++.+++++.|+++|.|+++++||++|.|++++.|.++.|
T Consensus       220 ~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i  299 (451)
T TIGR01173       220 LGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVI  299 (451)
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEe
Confidence            99999999988776554322211   1111  133456778888999999999999988999999999999999999999


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceE
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIY  279 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~  279 (302)
                      +++|.|++++.+.+++|++++.|+++++|.++++|+++++|++++.
T Consensus       300 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~  345 (451)
T TIGR01173       300 GSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE  345 (451)
T ss_pred             cCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence            9999999999999999999999999888887888888887777654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.98  E-value=5.2e-31  Score=218.60  Aligned_cols=171  Identities=29%  Similarity=0.505  Sum_probs=151.7

Q ss_pred             hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      ++++++ +++||++|+|..|++++|.|+|+..|++++.+   ++|+++.||.++..+++++++.+.++.++.++++++++
T Consensus        62 ~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~  137 (286)
T COG1209          62 KELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD  137 (286)
T ss_pred             hhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence            566777 88999999999999999999999999999975   89999999998766999999999998999999999999


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCcccc-----chHHHHhcCcEE-EEEec
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKE-----VFPKIALEGKLF-AMVLP  155 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~-----~~~~l~~~~~v~-~~~~~  155 (302)
                      +|++||++.+|+ +++++++.|||..+.+++..+|+|+|++++|+.+..-.+|...|     .++.+++++... ....+
T Consensus       138 dP~rfGV~e~d~-~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~  216 (286)
T COG1209         138 DPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR  216 (286)
T ss_pred             CcccceEEEEcC-CCcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence            999999999997 67999999999999999999999999999999887665555544     367788877654 45567


Q ss_pred             CeeEecCChHHHHHHHHHHHHh
Q 022113          156 GFWMDIGQPRDYITGLRLYLDS  177 (302)
Q Consensus       156 g~~~digt~~~~~~a~~~~l~~  177 (302)
                      |+|.|+|+++++++|+...+..
T Consensus       217 G~WlDtGt~~slleA~~~i~~~  238 (286)
T COG1209         217 GWWLDTGTPESLLEANNFVRTV  238 (286)
T ss_pred             ceEEecCChhhHHHHHHHHHHH
Confidence            8999999999999999877663

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=2.5e-29  Score=233.84  Aligned_cols=232  Identities=17%  Similarity=0.223  Sum_probs=160.4

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      .+.++.+..+.+++||+++++.+++++... +++|++++||+ +++ .++.++++.+ +...+.+++..+..++..||.+
T Consensus        69 ~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~  146 (446)
T PRK14353         69 IAPDAEIFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRL  146 (446)
T ss_pred             cCCCceEEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEE
Confidence            344566777888899999999999988421 36899999998 554 4578888744 5566788888887788889988


Q ss_pred             EEeCCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhcC-cEEEEEec-C
Q 022113           90 VMEESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLP-G  156 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~~-~v~~~~~~-g  156 (302)
                      .++  +++++.+.|||...    ...+.++|+|+|+++.| +.++..      ......+.++.+++.+ ++.++..+ +
T Consensus       147 ~~~--~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~  224 (446)
T PRK14353        147 IVK--GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPED  224 (446)
T ss_pred             EEC--CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChh
Confidence            774  68999999998542    12578999999998655 444321      1111234466676664 58888876 4


Q ss_pred             eeEecCChHHHHHHHHHHHHhh-----cc------------ccccccccCceEecceEEcCCcEECCCCEECC-----Cc
Q 022113          157 FWMDIGQPRDYITGLRLYLDSL-----RK------------KSSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DV  214 (302)
Q Consensus       157 ~~~digt~~~~~~a~~~~l~~~-----~~------------~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~  214 (302)
                      +|.++++|++|..++..+....     ..            ...+.+.+++.|++++.|++++.||++|.|++     ++
T Consensus       225 ~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~  304 (446)
T PRK14353        225 EVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGA  304 (446)
T ss_pred             hcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEecc
Confidence            6999999999999886554321     00            01234555556666666666666666666665     45


Q ss_pred             EECCCCEECCCcEEe-ceEEccCCEECCCcEEec
Q 022113          215 AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS  247 (302)
Q Consensus       215 ~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~  247 (302)
                      +||++|.||+++.|. +++|+++|.|++++.+.+
T Consensus       305 ~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~  338 (446)
T PRK14353        305 HVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN  338 (446)
T ss_pred             EECCCcEECCCeEEeccceecCCeEEcCceEEec
Confidence            677777777777776 677777777777665543

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=1.3e-28  Score=228.16  Aligned_cols=239  Identities=18%  Similarity=0.259  Sum_probs=154.3

Q ss_pred             EEEEEecC--CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQET--EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~--~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.|+.++  ..+||+++++++...     .++|++++||..+.  ..+.++.+.+.++++++.+.+.+++..||.+..+
T Consensus        68 ~v~~~~~~~~~~~gt~~al~~~~~~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d  140 (430)
T PRK14359         68 GVIFHTQDLENYPGTGGALMGIEPK-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE  140 (430)
T ss_pred             ceEEEEecCccCCCcHHHHhhcccC-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc
Confidence            45566553  468999999885321     37899999998321  1234455556667788888888888889988775


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHhhccC-C------CCCccccchHHHHhc-CcEEEEEec-CeeE
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLDRIEL-R------PTSIEKEVFPKIALE-GKLFAMVLP-GFWM  159 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~-~------~~~~~~~~~~~l~~~-~~v~~~~~~-g~~~  159 (302)
                        ++++..+.|+|...    ...+.++|+|+|++++|..+.. .      ......+.++.+++. .++.++..+ ++|.
T Consensus       141 --~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~  218 (430)
T PRK14359        141 --NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFM  218 (430)
T ss_pred             --CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEe
Confidence              58999999987532    2357899999999999976521 1      111224556666665 578888886 5899


Q ss_pred             ecCChHHHHHHHHHHHHhhcccc-----------ccccccCceEecceEEcCCcEECCCCEE-----------CC----C
Q 022113          160 DIGQPRDYITGLRLYLDSLRKKS-----------SLKLATGANIVGNVLVHESAQIGEGCLI-----------GP----D  213 (302)
Q Consensus       160 digt~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~i~~~~~i~~~~~i~~~~~i-----------~~----~  213 (302)
                      |+++|++|.+++..++.......           ...+.+++.|.+++.+++++.|+++|.|           ++    +
T Consensus       219 dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~  298 (430)
T PRK14359        219 GVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESIIEN  298 (430)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEeccEEeC
Confidence            99999999999876655433211           2234555666666666666655444433           22    3


Q ss_pred             cEECCCCEECCCcEEeceEEccCC----------EECCCcEEeccEECCCCEECCCcEE
Q 022113          214 VAVGPGCVVESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      ++||++|.|+++++|.+|+|+++|          +|++++.|++|+||++|.||+++.+
T Consensus       299 ~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~  357 (430)
T PRK14359        299 SDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT  357 (430)
T ss_pred             CEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence            344455555555555555555554          4445555666777777777776443

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=1.6e-29  Score=235.69  Aligned_cols=253  Identities=22%  Similarity=0.328  Sum_probs=175.3

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      +++|+.|++++||+++++.+++++..  +++|++++||+  +.+.++.++++.|.+.+  ++++..+.+++..||++.. 
T Consensus        70 ~~~~i~~~~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~-  144 (456)
T PRK09451         70 PLNWVLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR-  144 (456)
T ss_pred             CcEEEECCCCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-
Confidence            67888888899999999999998853  36899999998  55678999998886543  4566677778888999754 


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHh-hccC---C---CCCccccchHHHHhcC-cEEEEE------e
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLD-RIEL---R---PTSIEKEVFPKIALEG-KLFAMV------L  154 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~-~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~------~  154 (302)
                      + +++|.+|.|||...    ..+++++|+|+|+++.|. .++.   .   ......++++.+++++ ++.+|.      +
T Consensus       145 ~-~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~  223 (456)
T PRK09451        145 E-NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEV  223 (456)
T ss_pred             c-CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHh
Confidence            3 68999999998642    136899999999998774 3321   1   1122357788888774 788885      4


Q ss_pred             cCe--eEecCChHHHHHHHH---HHHHhhccccccccccC-ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113          155 PGF--WMDIGQPRDYITGLR---LYLDSLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       155 ~g~--~~digt~~~~~~a~~---~~l~~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  228 (302)
                      +|+  |.|++++++|++++.   .++.....     .++. ..+.+++.+++++.|+++|.|.++++||++|.|+++|.|
T Consensus       224 ~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i  298 (456)
T PRK09451        224 EGVNNRLQLARLERVYQAEQAEKLLLAGVML-----RDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVL  298 (456)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE-----eCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceE
Confidence            566  678999999998763   22211111     1111 123345566666666666666666677777777777777


Q ss_pred             eceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113          229 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI  278 (302)
Q Consensus       229 ~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~  278 (302)
                      .+|.|+++|.|++++.|+++++++++.|++++.|.+++.|+++++|++++
T Consensus       299 ~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~  348 (456)
T PRK09451        299 KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFV  348 (456)
T ss_pred             ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccce
Confidence            66777777777777777666666666666666666566666665555544

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=7.4e-29  Score=230.85  Aligned_cols=255  Identities=21%  Similarity=0.296  Sum_probs=180.6

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .++++.|++++||+++++.|++++..  +++|++++||+  +.+.+++++++.|+++++++++++.+.+++..||.+.++
T Consensus        63 ~~~~~~~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d  140 (448)
T PRK14357         63 WVKIFLQEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD  140 (448)
T ss_pred             ccEEEecCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc
Confidence            45677888899999999999999853  37899999997  557789999999988888999999998888899998876


Q ss_pred             CCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhHhh-ccCCCC------CccccchHHHHhcCcEEEEEecCe--eE
Q 022113           93 ESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVLDR-IELRPT------SIEKEVFPKIALEGKLFAMVLPGF--WM  159 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~~-l~~~~~------~~~~~~~~~l~~~~~v~~~~~~g~--~~  159 (302)
                        ++++ .+.|+|..+.    .++.++|+|+|++++|.. ++....      ....++++.+   .++.+|.+.++  |.
T Consensus       141 --~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~  214 (448)
T PRK14357        141 --GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEIT  214 (448)
T ss_pred             --CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEE
Confidence              5777 8888765431    358999999999998643 432111      1112333333   35778888888  66


Q ss_pred             ecCChHHHHHHHHHHHHhhccc---cc-cccccC-ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEc
Q 022113          160 DIGQPRDYITGLRLYLDSLRKK---SS-LKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVM  234 (302)
Q Consensus       160 digt~~~~~~a~~~~l~~~~~~---~~-~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~  234 (302)
                      ++++|+++..+...+.....+.   .. ..+.++ +.|++++.|++++.|++++.|++++.||++|.|++++.|.+|+|+
T Consensus       215 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig  294 (448)
T PRK14357        215 GVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIG  294 (448)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEEC
Confidence            7789999988766553221111   11 113333 466777777777777777777777778888888888777777777


Q ss_pred             cCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113          235 RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI  278 (302)
Q Consensus       235 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~  278 (302)
                      ++|.|. .+.+.++++++++.|+++++|.++++|+++++|++++
T Consensus       295 ~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~  337 (448)
T PRK14357        295 NNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFV  337 (448)
T ss_pred             CCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCce
Confidence            777774 3566666666666666666665556666666655544

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.97  E-value=2.1e-28  Score=228.44  Aligned_cols=263  Identities=23%  Similarity=0.375  Sum_probs=200.6

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.|+.+++++||+++++++++++... ++.|+++.||.  +.+.++.++++.|++.++++++++.+.+++..||.+..+
T Consensus        66 ~~~~~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d  144 (458)
T PRK14354         66 RSEFALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRN  144 (458)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEc
Confidence            356777888999999999999998531 25799999997  346679999999988778888888887788889988887


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHh-hHhhccCC------CCCccccchHHHHhc-CcEEEEEecCe--e
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPA-VLDRIELR------PTSIEKEVFPKIALE-GKLFAMVLPGF--W  158 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~-~l~~l~~~------~~~~~~~~~~~l~~~-~~v~~~~~~g~--~  158 (302)
                      + +++++.+.|||...    ...++++|+|+|+++ +++.++..      ......+.++.+++. .++.+|..+++  |
T Consensus       145 ~-~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~  223 (458)
T PRK14354        145 E-NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEES  223 (458)
T ss_pred             C-CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceE
Confidence            5 78999999987431    235789999999987 44555321      111123556667655 46889988876  4


Q ss_pred             EecCChHHHHHHHHHHHHhhccc----ccccccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRKK----SSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                      ++++++++|..++..+.......    ....+++ .+.|++++.|++++.|+++|.|++++.||++|.|++++.|.+++|
T Consensus       224 i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~i  303 (458)
T PRK14354        224 LGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTI  303 (458)
T ss_pred             EccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEE
Confidence            57779999988876554433211    1122444 356778888888888888888888899999999999999999999


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      +++|.|+ ++.+.+++|++++.|++++.|.++++||+++++++++.+
T Consensus       304 g~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i  349 (458)
T PRK14354        304 GDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEI  349 (458)
T ss_pred             CCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEE
Confidence            9999998 477788888888888888888878888888888777655

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.96  E-value=5.9e-27  Score=218.22  Aligned_cols=263  Identities=17%  Similarity=0.283  Sum_probs=193.4

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.++.++.+.||+++++++++++... ++++++++||.  +.+.++.++++.|++.+++++++..+.+++..||.+.+|
T Consensus        67 ~i~~v~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d  145 (450)
T PRK14360         67 GLEFVEQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCD  145 (450)
T ss_pred             CeEEEEeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEEC
Confidence            467778888899999999999988532 25799999998  456779999999998888888887777788889999888


Q ss_pred             CCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhHhhc-cCCC-CCcccc-chHHHHhc-CcEEEEEecCee--EecC
Q 022113           93 ESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVLDRI-ELRP-TSIEKE-VFPKIALE-GKLFAMVLPGFW--MDIG  162 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l~~l-~~~~-~~~~~~-~~~~l~~~-~~v~~~~~~g~~--~dig  162 (302)
                      + ++++.+|.|||..    ..+.++++|+|+|+++.|..+ +... .....+ ++...+.. .++.++...++|  ..++
T Consensus       146 ~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~  224 (450)
T PRK14360        146 G-NNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVMAVEVEDYQEINGIN  224 (450)
T ss_pred             C-CCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhhceEEecCCHHHhhcCC
Confidence            5 7899999999853    245789999999999877543 2211 111122 22222211 234556666654  5699


Q ss_pred             ChHHHHHHHHHHHHhhc----cccccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCC
Q 022113          163 QPRDYITGLRLYLDSLR----KKSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGV  237 (302)
Q Consensus       163 t~~~~~~a~~~~l~~~~----~~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~  237 (302)
                      +|+++..+...+.....    ......+++.. .+.+++.+++++.|++++.|+++++||++|.|++++.|.+|.|+++|
T Consensus       225 ~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~  304 (450)
T PRK14360        225 DRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENV  304 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCC
Confidence            99999988876654332    11112455553 57778888888888888888888899999999999988888888888


Q ss_pred             EECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          238 RIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       238 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      .|+ ++.+.++++++++.|++++.|.++++|+++|+|++++.+
T Consensus       305 ~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i  346 (450)
T PRK14360        305 TVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEI  346 (450)
T ss_pred             EEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEE
Confidence            884 566777777888888777777777777777777776654

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.8e-26  Score=207.48  Aligned_cols=280  Identities=17%  Similarity=0.271  Sum_probs=199.0

Q ss_pred             hhHHHHHhhcC----CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcC-----Cc
Q 022113            2 LNFLKEFEAKL----GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG-----GE   72 (302)
Q Consensus         2 ~~~~~~~~~~~----g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~-----~~   72 (302)
                      .+|++.  +.|    ...++.+..++..-+|+++|..-..-..  .++|++++||++++.+|.+++++|++.+     +-
T Consensus        85 ~e~i~~--sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~li--tgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~i  160 (673)
T KOG1461|consen   85 IEYIEK--SEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAI  160 (673)
T ss_pred             HHHHhh--ccccccccceEEEEcCCCcCcHHHHHHHHHhccee--ecceEEEeCCeeecCchHHHHHHHHHHhhhCccce
Confidence            345544  445    3456677777788899999876443211  3799999999999999999999995532     34


Q ss_pred             EEEEEEeCC--CCCCcceEEEeCCCCcEEEEEe--cCCC----------------CCCCeEEEEEEEeCHhhHhhccCCC
Q 022113           73 ASIMVTKVD--EPSKYGVVVMEESTGKVEKFVE--KPKL----------------FVGNKINAGIYLLNPAVLDRIELRP  132 (302)
Q Consensus        73 ~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~~e--kp~~----------------~~~~~~~~Giy~~~~~~l~~l~~~~  132 (302)
                      +||++.+..  ....--.+.+|..+.+++.+.+  .+..                ...++.+++|-+++++++..+..+.
T Consensus       161 MTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNF  240 (673)
T KOG1461|consen  161 MTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNF  240 (673)
T ss_pred             EEEEEeccccccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcc
Confidence            455555431  1112245667776788888875  1110                1357889999999999998775432


Q ss_pred             C-----CccccchHHHHhcCcEEEEEecC--eeEecCChHHHHHHHHHHHHhh-----------------------cccc
Q 022113          133 T-----SIEKEVFPKIALEGKLFAMVLPG--FWMDIGQPRDYITGLRLYLDSL-----------------------RKKS  182 (302)
Q Consensus       133 ~-----~~~~~~~~~l~~~~~v~~~~~~g--~~~digt~~~~~~a~~~~l~~~-----------------------~~~~  182 (302)
                      .     ++.+.++-..+-..+++++....  |-..+.+.+.|....+..+.++                       .+..
T Consensus       241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~  320 (673)
T KOG1461|consen  241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSP  320 (673)
T ss_pred             cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCc
Confidence            2     22223333334456788877764  7778888888876665544332                       1122


Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      ...+.+.+.++.++.||.++.||.+++| .|++||+||.||.+++|.+|.||++|+||+||+|++|+|++++.|+.++.+
T Consensus       321 dv~~~~~~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l  399 (673)
T KOG1461|consen  321 DVVLSHSVIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAIL  399 (673)
T ss_pred             cceehhhccccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCccc
Confidence            2334445667777888888888888888 589999999999999999999999999999999999999999999999988


Q ss_pred             ccCcEECCCcEECCceEEcCCeEe
Q 022113          263 ENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       263 ~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      .++|++|.++++|++.++..++++
T Consensus       400 ~~g~vl~~~VVv~~~~~l~~ns~~  423 (673)
T KOG1461|consen  400 KPGSVLGFGVVVGRNFVLPKNSKV  423 (673)
T ss_pred             CCCcEEeeeeEeCCCccccccccc
Confidence            888888888888888888777654

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=4.5e-26  Score=196.31  Aligned_cols=256  Identities=21%  Similarity=0.357  Sum_probs=189.0

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC----CC-------CCcceEEEe
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD----EP-------SKYGVVVME   92 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~-------~~~g~v~~d   92 (302)
                      ..|||++|+...+++..   +|||+++||.+++.++..+++.|++.++..+++.....    .|       +.+.++..+
T Consensus        96 d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~igi~  172 (433)
T KOG1462|consen   96 DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIGIN  172 (433)
T ss_pred             ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceeeec
Confidence            56999999999999964   79999999999999999999999988776666555431    11       123456666


Q ss_pred             CCCCcEEEEEec-----------------CCC-CCCCeEEEEEEEeCHhhHhhccCC--CCCccccchHHHHhc------
Q 022113           93 ESTGKVEKFVEK-----------------PKL-FVGNKINAGIYLLNPAVLDRIELR--PTSIEKEVFPKIALE------  146 (302)
Q Consensus        93 ~~~~~v~~~~ek-----------------p~~-~~~~~~~~Giy~~~~~~l~~l~~~--~~~~~~~~~~~l~~~------  146 (302)
                      ++++|+......                 |+. ..+.+.++++|+|+.++++.|.++  -.++..++++.+++.      
T Consensus       173 e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~  252 (433)
T KOG1462|consen  173 EDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKKQFQKNP  252 (433)
T ss_pred             cccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhhhhhcCC
Confidence            656665543321                 221 146789999999999999999743  346666776654432      


Q ss_pred             ---------------------------CcEEEEEec--CeeEecCChHHHHHHHH--HHHHhhcccc--ccccccCceEe
Q 022113          147 ---------------------------GKLFAMVLP--GFWMDIGQPRDYITGLR--LYLDSLRKKS--SLKLATGANIV  193 (302)
Q Consensus       147 ---------------------------~~v~~~~~~--g~~~digt~~~~~~a~~--~~l~~~~~~~--~~~~~~~~~i~  193 (302)
                                                 -++++|..+  ..+.+++|.-.|+++++  .+........  .......+.++
T Consensus       253 ~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g  332 (433)
T KOG1462|consen  253 PLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVKKVALVG  332 (433)
T ss_pred             CcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhhheeccc
Confidence                                       234555543  46889999999999994  3322221111  11112225566


Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcE
Q 022113          194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH  273 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~  273 (302)
                      -+++++++++|++++.| ..++||++|.||++++|.+|++|+|++||+|+.|++|+||.++.||+++.+ .+|.||.+-+
T Consensus       333 ~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L-~nC~Ig~~yv  410 (433)
T KOG1462|consen  333 ADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKL-KNCIIGPGYV  410 (433)
T ss_pred             hhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCee-eeeEecCCcE
Confidence            68888899999988888 599999999999999999999999999999999999999999999999999 6688888877


Q ss_pred             ECCceEEcCCe
Q 022113          274 VCDEIYSNGGV  284 (302)
Q Consensus       274 v~~~~~v~~~~  284 (302)
                      |.+.....+.+
T Consensus       411 Veak~~~~~ev  421 (433)
T KOG1462|consen  411 VEAKGKHGGEV  421 (433)
T ss_pred             EcccccccccE
Confidence            77655544433

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=99.94  E-value=1.5e-25  Score=193.66  Aligned_cols=171  Identities=37%  Similarity=0.692  Sum_probs=143.4

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--   80 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--   80 (302)
                      +|+++....+++.+.|+.|++++||++|++++++++....+++|+|++||++++.|+++++++|+++++++|+++.+.  
T Consensus        63 ~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~  142 (257)
T cd06428          63 DFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR  142 (257)
T ss_pred             HHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence            455543334688999999988999999999999998533236899999999999999999999999999999888876  


Q ss_pred             CCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCC---------------------CCCccccc
Q 022113           81 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEV  139 (302)
Q Consensus        81 ~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~---------------------~~~~~~~~  139 (302)
                      +++..||++.+|+.+++|++|.|||....++++++|+|+|++++|+.++..                     ..++..++
T Consensus       143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~  222 (257)
T cd06428         143 EQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDV  222 (257)
T ss_pred             cccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhh
Confidence            457889999988336899999999987778899999999999999877521                     12234678


Q ss_pred             hHHHHhcCcEEEEEecCeeEecCChHHHHHHHHH
Q 022113          140 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL  173 (302)
Q Consensus       140 ~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~  173 (302)
                      ++.+++++++.+|.++|+|.|++++++|+++++.
T Consensus       223 ~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~  256 (257)
T cd06428         223 LTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL  256 (257)
T ss_pred             hhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence            8889988999999999999999999999999864

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=99.94  E-value=4e-25  Score=188.27  Aligned_cols=171  Identities=73%  Similarity=1.245  Sum_probs=148.0

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +|+.+...++++++.+..+.+++||+++++.|++++... +++|++++||++++.+++++++.|+++++++++++.+.++
T Consensus        62 ~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (233)
T cd06425          62 PFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED  140 (233)
T ss_pred             HHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence            344443335688888888888999999999999998531 3689999999999999999999999999999999998888


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecC
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG  162 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~dig  162 (302)
                      +..||++.+++++++|+++.|||..+.++++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.|+|
T Consensus       141 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig  220 (233)
T cd06425         141 PSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIG  220 (233)
T ss_pred             ccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCC
Confidence            88999999985358999999999876678999999999999999887665666678899999999999999999999999


Q ss_pred             ChHHHHHHHHHH
Q 022113          163 QPRDYITGLRLY  174 (302)
Q Consensus       163 t~~~~~~a~~~~  174 (302)
                      +|++|++|++.+
T Consensus       221 t~~~~~~a~~~~  232 (233)
T cd06425         221 QPKDFLKGMSLY  232 (233)
T ss_pred             CHHHHHHHHHHh
Confidence            999999998765

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=99.92  E-value=5.7e-24  Score=185.73  Aligned_cols=168  Identities=19%  Similarity=0.332  Sum_probs=140.3

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      +++++ ++.||++++|+.|++++|||+|++.+++++.+   +++++++||.+ ++.++.++++.|.+.++++|+++++.+
T Consensus        66 ~~l~~-g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~  141 (292)
T PRK15480         66 QLLGD-GSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN  141 (292)
T ss_pred             HHHcC-ccccCceeEEEECCCCCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            44555 56799999999999999999999999999964   57999999975 589999999999888888999988889


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCc-----cccchHHHHhcCcEEE-EEec
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSI-----EKEVFPKIALEGKLFA-MVLP  155 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~~~v~~-~~~~  155 (302)
                      +|..||++.+|+ ++++++|.|||..+.++++++|+|+|++++++.++....+-     ..++++.+++++++.. +..+
T Consensus       142 ~p~~yGvv~~d~-~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~  220 (292)
T PRK15480        142 DPERYGVVEFDQ-NGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGR  220 (292)
T ss_pred             CcccCcEEEECC-CCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecC
Confidence            999999999985 78999999999887789999999999999998875322221     1356777888887654 4556


Q ss_pred             C-eeEecCChHHHHHHHHHHH
Q 022113          156 G-FWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       156 g-~~~digt~~~~~~a~~~~l  175 (302)
                      | .|+|+|||++|.+|+..+.
T Consensus       221 g~~W~DiGt~~~l~~a~~~~~  241 (292)
T PRK15480        221 GYAWLDTGTHQSLIEASNFIA  241 (292)
T ss_pred             CcEEECCCCHHHHHHHHHHHH
Confidence            8 5999999999999988765

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=99.92  E-value=1.1e-23  Score=184.40  Aligned_cols=161  Identities=25%  Similarity=0.423  Sum_probs=131.0

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +++++++|+.|++++|||||+++|++++++   ++|+|++||++++        +++.+++++|.+.++.++++....++
T Consensus        94 ~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~  170 (297)
T TIGR01105        94 PPGVTIMNVRQAQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD  170 (297)
T ss_pred             CCCceEEEeeCCCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC
Confidence            468899999999999999999999999964   6899999999987        58999999998777666444443357


Q ss_pred             CCCcceEEEeC---CCCc---EEEEEecCCCC---CCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCc
Q 022113           83 PSKYGVVVMEE---STGK---VEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGK  148 (302)
Q Consensus        83 ~~~~g~v~~d~---~~~~---v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~  148 (302)
                      +..||++.+++   .+++   |.+|.|||..+   .++++++|+|+|++++|+.++....+     ...+.++.++++++
T Consensus       171 ~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~~  250 (297)
T TIGR01105       171 LSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQS  250 (297)
T ss_pred             CccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcCC
Confidence            88999999842   1454   58999999754   36899999999999999988643221     12366788888899


Q ss_pred             EEEEEecCeeEecCChHHHHHHHHHH
Q 022113          149 LFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       149 v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      +.++.++|+|+|+|+|++|++|+..+
T Consensus       251 v~~~~~~g~w~DiG~p~~~~~a~~~~  276 (297)
T TIGR01105       251 VDAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             EEEEEeccEEECCCCHHHHHHHHHHH
Confidence            99999999999999999999996543

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=99.92  E-value=8.2e-24  Score=184.49  Aligned_cols=168  Identities=20%  Similarity=0.362  Sum_probs=140.1

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      +++++ ++.||+++.|+.|++++|||+|++++++++.+   ++|++++||. +++.++.++++.|.+.++++++++++.+
T Consensus        62 ~~lg~-g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~  137 (286)
T TIGR01207        62 QLLGD-GSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS  137 (286)
T ss_pred             HHhcc-ccccCceEEEEEccCCCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence            44444 56799999999999999999999999999964   6899999997 4688999999999888888999999988


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEe-c
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVL-P  155 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~-~  155 (302)
                      +|..||++.+|+ +++|++|.|||..+.++++++|+|+|++++++.++....+     ...++++.+++++++.++.+ +
T Consensus       138 ~p~~yGvv~~d~-~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~  216 (286)
T TIGR01207       138 DPERYGVVEFDS-NGRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGR  216 (286)
T ss_pred             CHHHCceEEECC-CCeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecC
Confidence            999999999986 7899999999987778899999999999999877422111     12366777888887766665 6


Q ss_pred             Ce-eEecCChHHHHHHHHHHH
Q 022113          156 GF-WMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       156 g~-~~digt~~~~~~a~~~~l  175 (302)
                      |+ |.|+|||++|++|+..+.
T Consensus       217 g~~W~DiGt~~~l~~A~~~~~  237 (286)
T TIGR01207       217 GYAWLDTGTHDSLLEASNFIQ  237 (286)
T ss_pred             CCEEEeCCCHHHHHHHHHHHH
Confidence            76 999999999999987653

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=99.92  E-value=4.1e-24  Score=183.72  Aligned_cols=172  Identities=37%  Similarity=0.694  Sum_probs=142.2

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCC-CCcEEEEeCCeecCcCHHHHHHHHHHcCC--cEEEEEEe
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGG--EASIMVTK   79 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~-~~~~lv~~gD~l~~~~l~~~~~~~~~~~~--~~~l~~~~   79 (302)
                      +++++ ...++++++|+.|++++|||+||++|++++..+. +++|++++||++++.++.++++.|+++++  .+++...+
T Consensus        63 ~~~~~-~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~  141 (248)
T PF00483_consen   63 EHLGS-GYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP  141 (248)
T ss_dssp             HHHTT-SGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE
T ss_pred             ccccc-cccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccc
Confidence            44555 3347889999999999999999999999997632 23499999999999999999999999887  56777778


Q ss_pred             CCCCCCcceEEEeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhcc----C--CCCCccccchHHHHhcCc-EEE
Q 022113           80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE----L--RPTSIEKEVFPKIALEGK-LFA  151 (302)
Q Consensus        80 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~----~--~~~~~~~~~~~~l~~~~~-v~~  151 (302)
                      .++++.||++.+|+ +++|++|.|||.... +.++++|+|+|++++|+.+.    .  .......+.++.+++++. +.+
T Consensus       142 ~~~~~~~g~v~~d~-~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~  220 (248)
T PF00483_consen  142 VEDPSRYGVVEVDE-DGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYA  220 (248)
T ss_dssp             SSGGGGSEEEEEET-TSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccccccceeeeecc-ceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEE
Confidence            88889999999995 789999999999876 78999999999999998772    1  223344667888888874 557


Q ss_pred             EEecC--eeEecCChHHHHHHHHHHHH
Q 022113          152 MVLPG--FWMDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       152 ~~~~g--~~~digt~~~~~~a~~~~l~  176 (302)
                      +..++  +|+|+|+|++|++|++.+++
T Consensus       221 ~~~~~~~~w~dig~~~~~~~a~~~~~~  247 (248)
T PF00483_consen  221 FIFEGNAYWIDIGTPEDYLEANMDLLN  247 (248)
T ss_dssp             EEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred             EEecCCeEEEECCCHHHHHHHHHHHhc
Confidence            78888  79999999999999987753

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=99.91  E-value=2.4e-23  Score=178.09  Aligned_cols=162  Identities=23%  Similarity=0.370  Sum_probs=137.3

Q ss_pred             hhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcc
Q 022113            9 EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYG   87 (302)
Q Consensus         9 ~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g   87 (302)
                      ++.|++++.|..|++++||++|++++++++..   ++|++++||++ .+.++.++++.|.++++++++++.+.+++..||
T Consensus        68 ~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  144 (240)
T cd02538          68 GSDLGIRITYAVQPKPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYG  144 (240)
T ss_pred             ccccCceEEEeeCCCCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCc
Confidence            45689999999998899999999999999864   68999999984 577899999999888888999998888888999


Q ss_pred             eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC-----CCccccchHHHHhcCcEEEEEec--CeeEe
Q 022113           88 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEGKLFAMVLP--GFWMD  160 (302)
Q Consensus        88 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~v~~~~~~--g~~~d  160 (302)
                      ++.+|+ +|+|+.+.|||..+...++++|+|+|++++|+.++...     .....++++.+++++++.++.++  |+|.|
T Consensus       145 ~v~~d~-~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~d  223 (240)
T cd02538         145 VVEFDE-NGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLD  223 (240)
T ss_pred             eEEecC-CCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEe
Confidence            999986 78999999999877778999999999999998875211     11124677888888888888776  99999


Q ss_pred             cCChHHHHHHHHHH
Q 022113          161 IGQPRDYITGLRLY  174 (302)
Q Consensus       161 igt~~~~~~a~~~~  174 (302)
                      +|+|++|.++++.+
T Consensus       224 igt~~~~~~a~~~~  237 (240)
T cd02538         224 TGTHESLLEASNFV  237 (240)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998755

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK10122 GalU regulator GalF; Provisional

Probab=99.91  E-value=5.8e-23  Score=180.23  Aligned_cols=160  Identities=24%  Similarity=0.421  Sum_probs=132.5

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      +++++.|+.|++++|||+|+++|++++.+   ++|+|++||++++        +|+.++++.|.+.+++++++....+++
T Consensus        95 ~~~~i~~~~q~~~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~  171 (297)
T PRK10122         95 PGVTIMNVRQGQPLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDL  171 (297)
T ss_pred             CCceEEEeecCCcCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCC
Confidence            57899999999999999999999999953   7899999999886        589999999988877765555444578


Q ss_pred             CCcceEEEeC---CCC---cEEEEEecCCCC---CCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcCcE
Q 022113           84 SKYGVVVMEE---STG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEGKL  149 (302)
Q Consensus        84 ~~~g~v~~d~---~~~---~v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~v  149 (302)
                      ..||++.+++   .++   +|++|.|||..+   .++++++|+|+|++++|+.++....     ....++++.+++++++
T Consensus       172 ~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~~v  251 (297)
T PRK10122        172 SEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQSV  251 (297)
T ss_pred             CCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCCCE
Confidence            8999999862   245   789999999754   2689999999999999988864211     1224677888888999


Q ss_pred             EEEEecCeeEecCChHHHHHHHHHH
Q 022113          150 FAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       150 ~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      .+|.++|+|+|+|+|++|++++..+
T Consensus       252 ~~~~~~G~w~DiG~p~~~~~a~~~~  276 (297)
T PRK10122        252 DAMLMTGDSYDCGKKMGYMQAFVKY  276 (297)
T ss_pred             EEEEeCCEEEcCCCHHHHHHHHHHH
Confidence            9999999999999999999998765

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=99.91  E-value=7.9e-23  Score=176.12  Aligned_cols=152  Identities=32%  Similarity=0.486  Sum_probs=132.3

Q ss_pred             EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCC
Q 022113           16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST   95 (302)
Q Consensus        16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~   95 (302)
                      ++|..|.+++|||+|++++++++..   ++|++++||++++.|++++++.|.+.++++|++..  +++..||.+.+|  +
T Consensus        94 ~~~~~~~~~~gt~~al~~~~~~i~~---e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG~v~~d--~  166 (254)
T TIGR02623        94 VTLVDTGESTQTGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QPPGRFGALDLE--G  166 (254)
T ss_pred             eeeeecCCcCCcHHHHHHHHHhcCC---CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEEC--C
Confidence            4566777889999999999999963   78999999999999999999999998888887655  466789999987  3


Q ss_pred             CcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113           96 GKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus        96 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      ++|++|.|||... ..++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.|+|+|++|.+++..+.
T Consensus       167 ~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~  245 (254)
T TIGR02623       167 EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWE  245 (254)
T ss_pred             CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHH
Confidence            5899999999654 578999999999999998876666677789999999999999999999999999999988877653

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional

Probab=99.89  E-value=1.1e-21  Score=172.53  Aligned_cols=158  Identities=25%  Similarity=0.294  Sum_probs=131.8

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCCCC
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEPS   84 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~~~   84 (302)
                      +..+.|..|++++|||+|+++|++++.+   ++|+|++||++++        .++.++++.|.+.+++ ++++.+.+++.
T Consensus       101 ~~~i~~~~q~~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~  176 (302)
T PRK13389        101 HVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVT  176 (302)
T ss_pred             CceEEEeecCCCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCC
Confidence            4678899999999999999999999853   7899999999874        7899999999887766 67777888888


Q ss_pred             CcceEEEeC------CCCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcCcEEE
Q 022113           85 KYGVVVMEE------STGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEGKLFA  151 (302)
Q Consensus        85 ~~g~v~~d~------~~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~v~~  151 (302)
                      .||++.+++      .++++..|.|||..  +.++++++|+|+|++++|+.++....     ....++++.+++++++.+
T Consensus       177 ~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~  256 (302)
T PRK13389        177 AYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEA  256 (302)
T ss_pred             cceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHHcCCEEE
Confidence            999998863      13579999999973  34689999999999999988853221     223466788888899999


Q ss_pred             EEecCeeEecCChHHHHHHHHHH
Q 022113          152 MVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       152 ~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      |.++|+|+|+|+|++|++|+..+
T Consensus       257 ~~~~G~w~DIGtpe~~~~a~~~~  279 (302)
T PRK13389        257 YHMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_pred             EEeeeEEEeCCCHHHHHHHHHHH
Confidence            99999999999999999997654

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=99.88  E-value=9e-21  Score=161.77  Aligned_cols=168  Identities=30%  Similarity=0.533  Sum_probs=139.3

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +++++ +.+|++++.++.++.++||+++++.|++++..   ++|++++||++++.++.++++.|.+++.++++++.+.++
T Consensus        62 ~~~~~-~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (236)
T cd04189          62 EALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED  137 (236)
T ss_pred             HHhcc-hhhcCCeEEEEECCCCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence            34444 33578899999998899999999999999853   689999999999999999999999888899999998888


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcC-cEEEEEecC
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEG-KLFAMVLPG  156 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~-~v~~~~~~g  156 (302)
                      +..||.+.+|  +++|..+.|||......+.++|+|+|++++|+.++.....     ...++++.+++++ ++.++.+++
T Consensus       138 ~~~~g~~~~d--~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~  215 (236)
T cd04189         138 PRRFGVAVVD--DGRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTG  215 (236)
T ss_pred             cccceEEEEc--CCeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCc
Confidence            8889998887  4599999999976656789999999999999877432111     1235677777664 689999999


Q ss_pred             eeEecCChHHHHHHHHHHHH
Q 022113          157 FWMDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       157 ~~~digt~~~~~~a~~~~l~  176 (302)
                      +|.|++||++|.+++..+++
T Consensus       216 ~~~~i~t~~dl~~a~~~~l~  235 (236)
T cd04189         216 WWKDTGTPEDLLEANRLLLD  235 (236)
T ss_pred             eEEeCCCHHHHHHHHHHHHh
Confidence            99999999999999987765

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=99.87  E-value=7.5e-21  Score=160.67  Aligned_cols=152  Identities=24%  Similarity=0.407  Sum_probs=130.2

Q ss_pred             cCCcEEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHH--HcCCcEEEEEEeCCCCCCcc
Q 022113           11 KLGIKIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK--AHGGEASIMVTKVDEPSKYG   87 (302)
Q Consensus        11 ~~g~~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~g   87 (302)
                      .|++++.|..+. +.+||+++++.+++++..   ++|++++||++++.++.++++.|.  +.++.+++...+.+++..||
T Consensus        67 ~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  143 (221)
T cd06422          67 RFGLRITISDEPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVG  143 (221)
T ss_pred             cCCceEEEecCCCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcc
Confidence            589999999887 789999999999999854   789999999999999999999997  45667777777777778899


Q ss_pred             eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHH
Q 022113           88 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY  167 (302)
Q Consensus        88 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~  167 (302)
                      .+.+++ ++++..+.|+|..   .+.++|+|+|++++|..+...... ..++++.+++++++.++.++|+|.|+++|++|
T Consensus       144 ~v~~d~-~~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~~~-~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~  218 (221)
T cd06422         144 DFSLDA-DGRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPGKFS-LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERL  218 (221)
T ss_pred             eEEECC-CCcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcCccc-HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHH
Confidence            999986 6899999999853   789999999999999888654322 35788888888999999999999999999999


Q ss_pred             HHH
Q 022113          168 ITG  170 (302)
Q Consensus       168 ~~a  170 (302)
                      .+|
T Consensus       219 ~~a  221 (221)
T cd06422         219 LAA  221 (221)
T ss_pred             hhC
Confidence            764

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=99.86  E-value=3.9e-20  Score=156.26  Aligned_cols=155  Identities=34%  Similarity=0.610  Sum_probs=135.0

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      |+.++.+..+.+.+||+++++.+++.+..   ++|++++||++++.++.++++.|.+.+.++++++.+.+++..||.+.+
T Consensus        68 ~~~~~~~~~~~~~~G~~~~l~~a~~~~~~---~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (223)
T cd06915          68 GGIRIYYVIEPEPLGTGGAIKNALPKLPE---DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTV  144 (223)
T ss_pred             cCceEEEEECCCCCcchHHHHHHHhhcCC---CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEE
Confidence            57788888888899999999999999843   789999999999999999999998888888888888777778999988


Q ss_pred             eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHH
Q 022113           92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG  170 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a  170 (302)
                      ++ ++++..+.|||......+.++|+|+|++++|+.+.....+...++++.++.++++.+|.++++|+||+++++|.+|
T Consensus       145 d~-~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a  222 (223)
T cd06915         145 DG-DGRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA  222 (223)
T ss_pred             CC-CCeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence            86 6899999999876556789999999999999887654445556788888888899999999999999999999876

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=99.86  E-value=4.2e-20  Score=159.30  Aligned_cols=149  Identities=32%  Similarity=0.532  Sum_probs=127.3

Q ss_pred             ecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEE
Q 022113           20 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE   99 (302)
Q Consensus        20 ~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~   99 (302)
                      .+.+.+||++++++|++++..  +++|++++||++++.++.++++.|.+.++++|++..  .++..||.+.+|+ +++|.
T Consensus        97 ~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~--~~~~~~g~v~~d~-~g~V~  171 (253)
T cd02524          97 DTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV--HPPGRFGELDLDD-DGQVT  171 (253)
T ss_pred             ccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECC-CCCEE
Confidence            344578899999999999853  268999999999999999999999988888887766  3567899999986 68999


Q ss_pred             EEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113          100 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       100 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      .+.|||... +.++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.+|+++++|.+++..+
T Consensus       172 ~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~  245 (253)
T cd02524         172 SFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW  245 (253)
T ss_pred             EEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence            999998654 46899999999999999887654445567889999999999999999999999999999998765

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=99.85  E-value=7.2e-20  Score=159.10  Aligned_cols=158  Identities=30%  Similarity=0.395  Sum_probs=127.8

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEeCC--CCCCcc
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTKVD--EPSKYG   87 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g   87 (302)
                      +++++|..|++++|||++|+++++++..   ++|+|++||+++..   +++++++.|+++++++ +++.+.+  ++..||
T Consensus        92 ~~~i~~~~~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g  167 (267)
T cd02541          92 LANIHYVRQKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYG  167 (267)
T ss_pred             CceEEEEEcCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccce
Confidence            6788999999999999999999999864   68999999997754   4999999998776653 5554443  567899


Q ss_pred             eEEEeCC---CCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEecCe
Q 022113           88 VVVMEES---TGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVLPGF  157 (302)
Q Consensus        88 ~v~~d~~---~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~~g~  157 (302)
                      ++.+|+.   .++|..+.|||..  ..+.++++|+|+|++++|+.++.....     ...++++.+++++++.+|.++|+
T Consensus       168 ~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~  247 (267)
T cd02541         168 IVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGK  247 (267)
T ss_pred             EEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeE
Confidence            9999852   3589999999863  456789999999999999888542211     12355788888889999999999


Q ss_pred             eEecCChHHHHHHHHHH
Q 022113          158 WMDIGQPRDYITGLRLY  174 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~  174 (302)
                      |.|+|+|++|++++..+
T Consensus       248 w~digt~~~y~~a~~~~  264 (267)
T cd02541         248 RYDCGNKLGYLKATVEF  264 (267)
T ss_pred             EEeCCCHHHHHHHHHHH
Confidence            99999999999998755

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=99.85  E-value=5.4e-20  Score=154.76  Aligned_cols=147  Identities=39%  Similarity=0.756  Sum_probs=129.9

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      |+.++.++.++++.||+++++.+++++.   +++|++++||++++.++.++++.|.++++++++++.+.+++..||.+.+
T Consensus        68 ~~~~i~~~~~~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  144 (217)
T cd04181          68 FGVNIEYVVQEEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVEL  144 (217)
T ss_pred             cCceEEEEeCCCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEE
Confidence            6889999999888999999999999983   3799999999999999999999999989899999998888889999999


Q ss_pred             eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC---CCccccchHHHHhcCcEEEEEecCeeEecC
Q 022113           92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG  162 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~---~~~~~~~~~~l~~~~~v~~~~~~g~~~dig  162 (302)
                      |+ +++|..+.|||......++++|+|+|++++|+.++...   ..+..++++.++++.++.++.++|+|.|+|
T Consensus       145 d~-~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig  217 (217)
T cd04181         145 DD-DGRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG  217 (217)
T ss_pred             cC-CCcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence            86 68999999999876678999999999999998876432   345567888888889999999999999986

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=99.85  E-value=1.2e-19  Score=153.18  Aligned_cols=154  Identities=35%  Similarity=0.658  Sum_probs=129.7

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      .+|++++.|+.++.++||+++++.+.+..    +++|+|++||++++.++.++++.|++++.++++++.+......||++
T Consensus        66 ~~~~~~i~~~~~~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~  141 (220)
T cd06426          66 SKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVV  141 (220)
T ss_pred             cccCccEEEEECCCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence            35788899988888899999998887765    27899999999999999999999998888888888876666779999


Q ss_pred             EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcC-cEEEEEecCeeEecCChHHHH
Q 022113           90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI  168 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~g~~~digt~~~~~  168 (302)
                      ..|  +++|+.+.|||..  ..++++|+|+|++++++.+.........++++.+++++ ++.+|.++++|+|++||++|.
T Consensus       142 ~~d--~~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~  217 (220)
T cd06426         142 ETE--GGRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYE  217 (220)
T ss_pred             EEC--CCEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHH
Confidence            887  4899999999865  46889999999999999886554332356788887764 699999999999999999998


Q ss_pred             HHH
Q 022113          169 TGL  171 (302)
Q Consensus       169 ~a~  171 (302)
                      +|+
T Consensus       218 ~a~  220 (220)
T cd06426         218 KAN  220 (220)
T ss_pred             hhC
Confidence            873

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=99.84  E-value=9.8e-20  Score=157.66  Aligned_cols=153  Identities=29%  Similarity=0.401  Sum_probs=122.7

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEeC--CCCCCcce
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV   88 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~   88 (302)
                      .++.|..|.+++||+++++++++++.+   ++|+|++||+++..   ++.++++.|.++++++ +++...  +++..||+
T Consensus        93 ~~i~~~~~~~~~G~~~al~~~~~~~~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~  168 (260)
T TIGR01099        93 ATIFYVRQKEQKGLGHAVLCAEPFVGD---EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGV  168 (260)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHHhhCC---CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCce
Confidence            567888888899999999999999843   78999999997653   6999999998888775 444443  36678999


Q ss_pred             EEEe---CCCCcEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEecCee
Q 022113           89 VVME---ESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVLPGFW  158 (302)
Q Consensus        89 v~~d---~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~~g~~  158 (302)
                      +.+|   +.+++|+.|.|||.  .....++++|+|+|++++|+.+.....+     ...++++.+++++++.+|.++|+|
T Consensus       169 v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w  248 (260)
T TIGR01099       169 IDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKR  248 (260)
T ss_pred             EEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEE
Confidence            9886   22469999999995  2346789999999999999888532221     123557778888999999999999


Q ss_pred             EecCChHHHHHH
Q 022113          159 MDIGQPRDYITG  170 (302)
Q Consensus       159 ~digt~~~~~~a  170 (302)
                      .|+|+|++|+++
T Consensus       249 ~digs~~~y~~a  260 (260)
T TIGR01099       249 YDCGSKLGYLKA  260 (260)
T ss_pred             EeCCCHHHHhhC
Confidence            999999999864

Built to distinquish between the highly similar genes galU and galF

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=99.84  E-value=1.7e-19  Score=150.22  Aligned_cols=167  Identities=31%  Similarity=0.432  Sum_probs=135.2

Q ss_pred             HHHHHhhc-CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEe
Q 022113            4 FLKEFEAK-LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus         4 ~~~~~~~~-~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      +++.+.+- -+.++.|+.|++++|.|||+++|++++++   ++|.|+.||.++..   .+++|++.|.+.+.+ .+.+.+
T Consensus        86 ~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~e  161 (291)
T COG1210          86 LLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEE  161 (291)
T ss_pred             HHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEE
Confidence            34444332 37899999999999999999999999986   89999999997753   388999999887764 345555


Q ss_pred             C--CCCCCcceEE----EeCCCCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCCccccc-----hHHHHhc
Q 022113           80 V--DEPSKYGVVV----MEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE  146 (302)
Q Consensus        80 ~--~~~~~~g~v~----~d~~~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~-----~~~l~~~  146 (302)
                      .  ++.++||++.    .++.-.++..+.|||+.  ..+++...|.|+|+|++|+.|+.......+|+     +..+++.
T Consensus       162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~  241 (291)
T COG1210         162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK  241 (291)
T ss_pred             CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence            5  4678999998    33212589999999954  46899999999999999999987655554555     5567788


Q ss_pred             CcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113          147 GKLFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       147 ~~v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      .++.+|.++|..+|+|++..|.+|+..+
T Consensus       242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~  269 (291)
T COG1210         242 EPVLAYVFEGKRYDCGSKLGYIKANVEF  269 (291)
T ss_pred             CcEEEEEecccEEccCCcccHHHHHHHH
Confidence            9999999999999999999999997654

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.82  E-value=7e-20  Score=154.38  Aligned_cols=150  Identities=25%  Similarity=0.330  Sum_probs=123.2

Q ss_pred             cchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhcc---------------ccccccccCceEecceEEcCCc
Q 022113          138 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHESA  202 (302)
Q Consensus       138 ~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~~  202 (302)
                      +.++.+++.+   ++..+|||.|+   ++|+++++.++.....               ...+.+++++.+.+++.|++++
T Consensus        32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~  105 (231)
T TIGR03532        32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNA  105 (231)
T ss_pred             hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCC
Confidence            4445555444   67789999999   9999999988865321               2335678888888889999999


Q ss_pred             EECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECCCCEECCCcEEccCcEECCCc
Q 022113          203 QIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       203 ~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      .|++++.|.++++||++|.|++++.|. +++|+++|.|+.++.+.         .++|+++++||+++.|.+++.||+++
T Consensus       106 ~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~  185 (231)
T TIGR03532       106 VIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGA  185 (231)
T ss_pred             EEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCC
Confidence            999999999999999999999999996 89999999999999996         48899999999999999999999999


Q ss_pred             EECCceEEc----CCeE---ecCccccc
Q 022113          273 HVCDEIYSN----GGVV---LPHKEIKS  293 (302)
Q Consensus       273 ~v~~~~~v~----~~~v---~~~~~~~~  293 (302)
                      .|++++++.    ++++   .|++.++.
T Consensus       186 ~IgagsvV~~di~~~~vv~G~PA~~i~~  213 (231)
T TIGR03532       186 VVAAGAIVTEDVPPNTVVAGVPAKVIKQ  213 (231)
T ss_pred             EECCCCEEccccCCCcEEEecCCEEecc
Confidence            999998864    4444   47766653

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.71  E-value=1.2e-16  Score=125.77  Aligned_cols=111  Identities=21%  Similarity=0.320  Sum_probs=102.0

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWH  253 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~  253 (302)
                      ..+.+++++.|.+++.|+.++.|+++++|.++   ..||.+|-|.++|+|+     .+.|+++|.||+++.|+.|.|+++
T Consensus        16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~   95 (176)
T COG0663          16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN   95 (176)
T ss_pred             CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC
Confidence            35788999999999999999999999999874   4999999999999997     689999999999999999999999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEecCcccc
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK  292 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~  292 (302)
                      |.||-+++|.+++.||++|.||+|+.+.++..+|.+.+.
T Consensus        96 ~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~  134 (176)
T COG0663          96 VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV  134 (176)
T ss_pred             cEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence            999999999999999999999999999998887776553

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.71  E-value=1.9e-16  Score=129.74  Aligned_cols=110  Identities=16%  Similarity=0.305  Sum_probs=98.5

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWH  253 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~  253 (302)
                      ..+.+++++.+.++++|++++.|+++|+|.+   .++||++|.|+++|.|     .+|+|++++.|++++.|.+|+|+++
T Consensus        13 ~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~   92 (192)
T TIGR02287        13 PEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN   92 (192)
T ss_pred             CCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence            4567888888888999999999999999874   5789999999999999     4799999999999999999999999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +.||.++.+.++++||+++.|++++.+.+++.+|++.+
T Consensus        93 ~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l  130 (192)
T TIGR02287        93 ALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYL  130 (192)
T ss_pred             CEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeE
Confidence            99999999999999999999999999988887776655

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.71  E-value=3.2e-16  Score=124.88  Aligned_cols=108  Identities=20%  Similarity=0.326  Sum_probs=96.2

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+++++.+.+++.+++++.|+++|+|.+   .+.||++|.|+++|.|     .+++|+++|.|++++.+.+++|++++
T Consensus         6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   85 (155)
T cd04745           6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA   85 (155)
T ss_pred             CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence            456778888889999999999999999876   5899999999999999     57999999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +|+.++.|.+++.|++++.|++++++.+++.+|++.
T Consensus        86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~  121 (155)
T cd04745          86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRS  121 (155)
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCC
Confidence            999999999999999999999999887766665544

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.70  E-value=4.1e-16  Score=125.39  Aligned_cols=110  Identities=24%  Similarity=0.404  Sum_probs=95.2

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcE
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWAR  261 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~  261 (302)
                      ..+.+.+++.+.++++|++++.|+++|.|.++++|+++|.|++++.|.+|+|++++.|++++.+.++++++++.|++++.
T Consensus        22 ~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~  101 (163)
T cd05636          22 EGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTI  101 (163)
T ss_pred             CCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcE
Confidence            34567777888888889999999999999889999999999999999999999999999999999999999999999998


Q ss_pred             Ecc------------------------CcEECCCcEECCceEEcCCeEecCccc
Q 022113          262 VEN------------------------MTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       262 i~~------------------------~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +.+                        +++|++++.++.++.+.++++++++.+
T Consensus       102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~  155 (163)
T cd05636         102 TANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSW  155 (163)
T ss_pred             EcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCE
Confidence            843                        578888888888888888887776553

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.69  E-value=7.1e-16  Score=123.74  Aligned_cols=110  Identities=12%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEEC---CCcEECCCCEECCCcEEec-----------eEEccCCEECCCcEEec
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISS  247 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~  247 (302)
                      ..+.+++++.+.+++.+++++.|+++|.|.   +.++||++|.|+++|.|.+           +.|++++.+..++++.+
T Consensus         4 ~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~   83 (164)
T cd04646           4 PGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA   83 (164)
T ss_pred             CCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe
Confidence            346688888888899999999999999885   4589999999999999974           46888888988999999


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      ++||++|+|++++.|.+++.||+++.|++++++.++..+|+..+
T Consensus        84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~v  127 (164)
T cd04646          84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTV  127 (164)
T ss_pred             eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeE
Confidence            99999999999999999999999999999999998887776654

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.68  E-value=5.1e-16  Score=127.56  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=92.9

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+++++.|.+++.|++++.|+++|+|.++   ++|+++|.|+++|.|+     +++|++++.|++++.+.+++|+++|
T Consensus        16 ~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v   95 (196)
T PRK13627         16 TAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDA   95 (196)
T ss_pred             CeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCC
Confidence            4567788888888888888888888888654   5788889999998885     5899999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      +||.++.+.+++.||+++.|+++++|..++.+|+.
T Consensus        96 ~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~  130 (196)
T PRK13627         96 LVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKR  130 (196)
T ss_pred             EECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence            99999999999999999999999998887755443

>PLN02296 carbonate dehydratase

Probab=99.68  E-value=6.9e-16  Score=132.38  Aligned_cols=109  Identities=19%  Similarity=0.304  Sum_probs=97.5

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEEccCCEECCCcEEecc
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS  248 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~  248 (302)
                      .+.+.+++.+.+++.|++++.|+.+|+|.+.   ++||++|.|+++|.|.           +++|+++|.|+++|.|.+|
T Consensus        58 ~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~  137 (269)
T PLN02296         58 DAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGC  137 (269)
T ss_pred             CCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCC
Confidence            4667788888888999999999999998875   4999999999999995           6899999999999999999


Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +|+++|.||.++.|.+++.|++++.|+++++|.+++.+|+..+
T Consensus       138 ~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~  180 (269)
T PLN02296        138 TVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEV  180 (269)
T ss_pred             EECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeE
Confidence            9999999999999999999999999999999988877766554

>PLN02472 uncharacterized protein

Probab=99.67  E-value=1.2e-15  Score=129.13  Aligned_cols=109  Identities=19%  Similarity=0.213  Sum_probs=98.0

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEEccCCEECCCcEEecc
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS  248 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~  248 (302)
                      .+.+.+++.+.+++.|++++.|+.+++|.++   .+||++|.|+++|.|.           +++|+++|.||++|.|.+|
T Consensus        65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~  144 (246)
T PLN02472         65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSC  144 (246)
T ss_pred             CCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCe
Confidence            4668888999999999999999999988765   7999999999999994           5899999999999999999


Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +|+++|.||.++.|.++++|++++.|++++++.++..+|+..+
T Consensus       145 ~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~  187 (246)
T PLN02472        145 TIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGEL  187 (246)
T ss_pred             EEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCE
Confidence            9999999999999999999999999999999988887776554

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.66  E-value=7.5e-15  Score=126.52  Aligned_cols=101  Identities=25%  Similarity=0.394  Sum_probs=53.8

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCc------EECCCCEECCCcEEe-ceEEccCCEECCCcEEe----------
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDV------AVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS----------  246 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~----------  246 (302)
                      +.+.+++.|+++++|++++.||++|+|++++      .||++|.|.+++.|. ++.||++|.|+++++|+          
T Consensus       112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~  191 (338)
T COG1044         112 ATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTA  191 (338)
T ss_pred             CccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcccccccc
Confidence            3344444444444444444444444444444      444444444444444 46666677766666663          


Q ss_pred             ----------ccEECCCCEECCCcEEccC----cEECCCcEECCceEEcCCe
Q 022113          247 ----------SSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       247 ----------~~~i~~~~~i~~~~~i~~~----~~i~~~~~v~~~~~v~~~~  284 (302)
                                +.+|+++|.||++++|..+    ++|+++++|.+-+.|+-++
T Consensus       192 ~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv  243 (338)
T COG1044         192 IGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNV  243 (338)
T ss_pred             CCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEcccc
Confidence                      3556777777777776655    5555555544444433333

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=99.65  E-value=7e-15  Score=124.99  Aligned_cols=148  Identities=18%  Similarity=0.381  Sum_probs=113.3

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      ++++. ..+.+.+||++++++|++.+..  +++|++++||++++.++.++++.|.+.+.+.++++.+. +...||.+.+|
T Consensus        71 ~~~i~-~~~~~~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d  146 (231)
T cd04183          71 NATVV-ELDGETLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLD  146 (231)
T ss_pred             CCEEE-EeCCCCCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEEC
Confidence            45553 4456789999999999998842  37899999999999999999998887777777766665 45579999998


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEEEEEEeCHh-hH-hhccC---C-----CCCccccchHHHHhcC-cEEEEEe-cCeeEe
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPA-VL-DRIEL---R-----PTSIEKEVFPKIALEG-KLFAMVL-PGFWMD  160 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~-~l-~~l~~---~-----~~~~~~~~~~~l~~~~-~v~~~~~-~g~~~d  160 (302)
                      + ++++..+.||+.  .+.+.++|+|+|+++ .| +.+..   .     ......+.++.+++++ ++.++.+ +++|.|
T Consensus       147 ~-~~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~d  223 (231)
T cd04183         147 E-NGRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHS  223 (231)
T ss_pred             C-CCCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEE
Confidence            6 789999998854  346789999999987 43 43321   1     1112246677778775 6999999 689999


Q ss_pred             cCChHHH
Q 022113          161 IGQPRDY  167 (302)
Q Consensus       161 igt~~~~  167 (302)
                      +++|++|
T Consensus       224 i~t~~dl  230 (231)
T cd04183         224 FGTPEDL  230 (231)
T ss_pred             cCChHhc
Confidence            9999986

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.65  E-value=1.7e-15  Score=128.17  Aligned_cols=107  Identities=12%  Similarity=0.222  Sum_probs=80.8

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW  252 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~  252 (302)
                      ..++.+++.++++++|++++.|+++ .+..++.||.+|.|+.++.|. ++.|+++|+|+.++.|+         +++|++
T Consensus       100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD  178 (269)
T TIGR00965       100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED  178 (269)
T ss_pred             CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence            3455566666666666666666553 444567778888888777776 47788888888888773         479999


Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +|+||+++.|.++++||+++.|++|++|.+++.+-+++
T Consensus       179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~  216 (269)
T TIGR00965       179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE  216 (269)
T ss_pred             CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc
Confidence            99999999999999999999999999998887544433

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.64  E-value=5.5e-15  Score=117.39  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=97.3

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-----eEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+++++.|.+++.+|+++.|+++|.|.+.   ++||++|.|+++|.|..     ++|++++.|++++.+.+++|++++
T Consensus         6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   85 (154)
T cd04650           6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV   85 (154)
T ss_pred             CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence            4567888888889999999999999988875   69999999999999974     899999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +|+.++.+.++++|++++++++++.+.++..+|+..+
T Consensus        86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v  122 (154)
T cd04650          86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSL  122 (154)
T ss_pred             EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCE
Confidence            9999999999999999999999998888777666554

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.62  E-value=1.1e-14  Score=115.88  Aligned_cols=110  Identities=20%  Similarity=0.312  Sum_probs=98.5

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-----eEEccCCEECCCcEEeccEECCC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWH  253 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~  253 (302)
                      ..+.+++++.|.+++.+++++.|++++.|.++   ++||++|.|++++.|..     +.|++++.|+.++.+.+++++++
T Consensus         4 ~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~   83 (153)
T cd04645           4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN   83 (153)
T ss_pred             CCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence            34668888999999999999999999988764   69999999999999986     69999999999999999999999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +.|++++.+..+++|++++.|++++.+.+++.+|.+++
T Consensus        84 ~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~  121 (153)
T cd04645          84 CLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSL  121 (153)
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCE
Confidence            99999999998999999999999999988877776554

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.61  E-value=2.8e-14  Score=128.12  Aligned_cols=82  Identities=24%  Similarity=0.398  Sum_probs=47.8

Q ss_pred             EECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe--------------------ccEECCCCEECCCcEEcc---
Q 022113          209 LIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHSTVGQWARVEN---  264 (302)
Q Consensus       209 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~~---  264 (302)
                      +|++++.||++|.|+++++|. ++.|+++|.|+++++|+                    +++|++++.||+++.|.+   
T Consensus       144 ~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~  223 (343)
T PRK00892        144 VIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGAL  223 (343)
T ss_pred             EEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCcc
Confidence            333333444444444444444 35567777777777773                    467788888888777742   


Q ss_pred             -CcEECCCcEECCceEEcCCeEecCcc
Q 022113          265 -MTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       265 -~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                       +++||++++++..+.++.++.++.+.
T Consensus       224 ~~t~Ig~~~~i~~~v~I~~~~~IG~~~  250 (343)
T PRK00892        224 DDTVIGEGVKIDNLVQIAHNVVIGRHT  250 (343)
T ss_pred             ccceeCCCCEEeCCeEEccCCEECCCc
Confidence             35666666666665555555554443

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.60  E-value=1.3e-14  Score=102.19  Aligned_cols=79  Identities=46%  Similarity=0.969  Sum_probs=72.8

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      ++|++.|++++.|+++++|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++++..+++|+++++++.
T Consensus         2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~   80 (80)
T cd05824           2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD   80 (80)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence            5788899999999999999999999999999999999999999999999999999999999999977788888887763

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.60  E-value=2.7e-14  Score=111.61  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECCCC
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHS  254 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~  254 (302)
                      ++++++.+++++.+++++.|.+++.|..++.||+++.|+.++.|. ++.|+++|.|++++.++         ++++++++
T Consensus         3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~   82 (139)
T cd03350           3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV   82 (139)
T ss_pred             ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence            466777777777777777777777777777888888888888875 57888888888888885         37899999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      +|++++.|.+++.|++++.|++++++.+++.+...
T Consensus        83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~  117 (139)
T cd03350          83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR  117 (139)
T ss_pred             EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence            99999999999999999999999999887766544

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains

Probab=99.59  E-value=3e-14  Score=114.47  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=88.4

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      ..+.+++.+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.++++++++.|++++.+
T Consensus         6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i   85 (163)
T cd05636           6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV   85 (163)
T ss_pred             cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence            4577889999999999999999999999999999999999999998 699999999999999999999999999998887


Q ss_pred             ccCcEECCCcEECCceEEcC
Q 022113          263 ENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       263 ~~~~~i~~~~~v~~~~~v~~  282 (302)
                       .+++|++++.|++++.+..
T Consensus        86 -~~siIg~~~~I~~~~~i~~  104 (163)
T cd05636          86 -GDSVLGENVNLGAGTITAN  104 (163)
T ss_pred             -ecCEECCCCEECCCcEEcc
Confidence             5578888888888776643

Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.59  E-value=1.9e-14  Score=123.96  Aligned_cols=51  Identities=8%  Similarity=0.049  Sum_probs=21.4

Q ss_pred             EEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          232 TVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       232 ~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      .|+++|.|++++.| ++|+|++++.|+.++.+..+++||+++.|+.++.+.+
T Consensus       104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~  155 (254)
T cd03351         104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQ  155 (254)
T ss_pred             EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECC
Confidence            33444444444444 2344444444444444344444444444444444333

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=99.57  E-value=9.2e-14  Score=118.74  Aligned_cols=158  Identities=19%  Similarity=0.228  Sum_probs=111.5

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHc-CCcEEEEEEeCCCCC---C
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAH-GGEASIMVTKVDEPS---K   85 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~---~   85 (302)
                      +++++.+..+..++||++ +..++..+... .+.|++++||+ ++ +.++.++++.|.+. +.++++++.+.+++.   .
T Consensus        61 ~~~~~~~~~~~~~~gt~~-~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (239)
T cd02517          61 FGGKVVMTSPDHPSGTDR-IAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFN  138 (239)
T ss_pred             cCCEEEEcCcccCchhHH-HHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccC
Confidence            577777766667889986 66666666421 25799999998 44 56699999988776 677888888876555   4


Q ss_pred             cce--EEEeCCCCcEEEEEecCCC-------CCCCeEEEEEEEeCHhhHhhccCCC-CCcc-ccchH--HHHhc-CcEEE
Q 022113           86 YGV--VVMEESTGKVEKFVEKPKL-------FVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALE-GKLFA  151 (302)
Q Consensus        86 ~g~--v~~d~~~~~v~~~~ekp~~-------~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~-~~~~~--~l~~~-~~v~~  151 (302)
                      ++.  +..++ +++++.|.++|..       +...+.++|+|+|++++|+.+.... ..+. .+.+.  .+++. .++.+
T Consensus       139 ~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~  217 (239)
T cd02517         139 PNVVKVVLDK-DGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKV  217 (239)
T ss_pred             CCCCEEEECC-CCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEE
Confidence            444  55664 6899999876432       1357899999999999998775421 1111 11111  34444 45889


Q ss_pred             EEecCeeEecCChHHHHHHHH
Q 022113          152 MVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       152 ~~~~g~~~digt~~~~~~a~~  172 (302)
                      +..+++|.|+|+|++|.++++
T Consensus       218 ~~~~~~w~~i~t~~dl~~a~~  238 (239)
T cd02517         218 VETDHESIGVDTPEDLERVEA  238 (239)
T ss_pred             EEeCCCCCCCCCHHHHHHHHh
Confidence            988999999999999998864

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.57  E-value=1.4e-13  Score=117.98  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=112.2

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeC------CC
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKV------DE   82 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~------~~   82 (302)
                      .+++++.+..++.+.||++....+.. +.....+.+++++||+ +. ...+.++++.|.+++++.++++.+.      .+
T Consensus        60 ~~~~~v~~~~~~~~~gt~~~~~~~~~-~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~  138 (245)
T PRK05450         60 AFGGEVVMTSPDHPSGTDRIAEAAAK-LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFN  138 (245)
T ss_pred             HcCCEEEECCCcCCCchHHHHHHHHh-cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcC
Confidence            46788877777778899876544433 3211125688899999 55 4558899998877767777777665      34


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCC----------CCCeEEEEEEEeCHhhHhhccCCCCC-c--cc--cchHHHHhcC
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLF----------VGNKINAGIYLLNPAVLDRIELRPTS-I--EK--EVFPKIALEG  147 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~----------~~~~~~~Giy~~~~~~l~~l~~~~~~-~--~~--~~~~~l~~~~  147 (302)
                      +..++++ +|+ +|+++.|.|+|...          .+++.++|+|+|++++++.+...... +  ..  ++.+.+.++.
T Consensus       139 ~~~~~v~-~d~-~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~  216 (245)
T PRK05450        139 PNVVKVV-LDA-DGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGY  216 (245)
T ss_pred             cCCCEEE-eCC-CCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCC
Confidence            5556755 775 78999999998322          24899999999999999877532111 1  11  1122233446


Q ss_pred             cEEEEEecC-eeEecCChHHHHHHHHH
Q 022113          148 KLFAMVLPG-FWMDIGQPRDYITGLRL  173 (302)
Q Consensus       148 ~v~~~~~~g-~~~digt~~~~~~a~~~  173 (302)
                      ++.++..++ +|.|+|+|++|.+|++.
T Consensus       217 ~v~~~~~~~~~w~~i~~~~dl~~a~~~  243 (245)
T PRK05450        217 RIHVVVVEEAPSIGVDTPEDLERVRAL  243 (245)
T ss_pred             ceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence            899999986 99999999999999764

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.57  E-value=5.8e-14  Score=112.49  Aligned_cols=107  Identities=20%  Similarity=0.313  Sum_probs=84.1

Q ss_pred             cccccCceEec--ceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-------------eEEccCCEECCCcEE
Q 022113          184 LKLATGANIVG--NVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACI  245 (302)
Q Consensus       184 ~~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i  245 (302)
                      ..+++.+.+.+  ++.+++++.|+++|+|.++   ++||++|.|++++.|..             +.|++++.|++++.+
T Consensus         8 ~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i   87 (161)
T cd03359           8 NKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV   87 (161)
T ss_pred             CeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEE
Confidence            34556666644  6777777777777777664   57888888888887763             579999999999999


Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      .++++++++.|++++.|+.+++|++++.+++++++.+++++|+..
T Consensus        88 ~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~  132 (161)
T cd03359          88 NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS  132 (161)
T ss_pred             EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence            999999999999999988888888888888888887777665544

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.57  E-value=1.6e-13  Score=113.93  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=79.2

Q ss_pred             CeeEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc
Q 022113          156 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  234 (302)
Q Consensus       156 g~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  234 (302)
                      ..+..++.+....+....+. .........+.+.+.+.+++.+++++.|+++|+|+++++||++|.|++++.|. ++.|+
T Consensus        61 ~~iiai~~~~~~~~i~~~l~-~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig  139 (201)
T TIGR03570        61 DLVVAIGDNKLRRRLFEKLK-AKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG  139 (201)
T ss_pred             EEEEEcCCHHHHHHHHHHHH-hCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence            34556655444443333222 11122233455666666666677777777777777677777777777777765 47777


Q ss_pred             cCCEECCCcEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          235 RGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       235 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      +++.|++++.+. ++.++++++|++++.+.+++.|++++++++++++..
T Consensus       140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~  188 (201)
T TIGR03570       140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK  188 (201)
T ss_pred             CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence            777777777775 477777777777777777777777777777766644

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.57  E-value=1.6e-13  Score=113.12  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=59.8

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARV  262 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  262 (302)
                      .+++.+.+.+++.+++++.|+++|+|++++.||++|.|++++.|. ++.|+++|.|+.++.+. +++|+++|+|+.++.+
T Consensus        86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v  165 (197)
T cd03360          86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI  165 (197)
T ss_pred             EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence            344455555566666666666666666666666666666666664 45666666666666663 3666666666666666


Q ss_pred             ccCcEECCCcEECCceEEcC
Q 022113          263 ENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       263 ~~~~~i~~~~~v~~~~~v~~  282 (302)
                      .+++.|++++.+++++++..
T Consensus       166 ~~~~~ig~~~~v~~~~~v~~  185 (197)
T cd03360         166 IQGVTIGAGAIIGAGAVVTK  185 (197)
T ss_pred             cCCCEECCCCEECCCCEEcC
Confidence            66666666666666655543

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=99.56  E-value=1.8e-14  Score=125.37  Aligned_cols=154  Identities=25%  Similarity=0.297  Sum_probs=110.0

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhcc-CCCCcEEEEeCCeecC--cCHHHHHHHHHH---cCCcEEEEEEeCCCCCCc
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMVTKVDEPSKY   86 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~-~~~~~~lv~~gD~l~~--~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~   86 (302)
                      +..+.++.|++++||++|+..|+.++.. +.++.++|++||+++.  .+|.++++.+.+   .+..+|+.+.+.++...|
T Consensus        72 ~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~y  151 (274)
T cd02509          72 LPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGY  151 (274)
T ss_pred             CCCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCe
Confidence            4567889999999999999999998853 2236789999999775  557666665533   567888888888777899


Q ss_pred             ceEEEeCCC-C---cEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCC----------------CC---C
Q 022113           87 GVVVMEEST-G---KVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELR----------------PT---S  134 (302)
Q Consensus        87 g~v~~d~~~-~---~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~----------------~~---~  134 (302)
                      |++..++.. +   +|.+|.|||...        ...++|+|+|+|+++.| +.++.-                ..   .
T Consensus       152 GyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  231 (274)
T cd02509         152 GYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLR  231 (274)
T ss_pred             EEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhh
Confidence            999998532 2   899999999743        13589999999997655 333210                00   1


Q ss_pred             ccccchHH----------HHhcCcEEEEEecCeeEecCChHH
Q 022113          135 IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRD  166 (302)
Q Consensus       135 ~~~~~~~~----------l~~~~~v~~~~~~g~~~digt~~~  166 (302)
                      +..+.|..          +.+..++.+.+.+..|.|+|++.+
T Consensus       232 ~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~  273 (274)
T cd02509         232 LLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA  273 (274)
T ss_pred             hhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence            11122222          334567888888889999999764

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.56  E-value=4.1e-14  Score=99.46  Aligned_cols=79  Identities=35%  Similarity=0.561  Sum_probs=70.9

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      +|++++.|++++.|.+ ++||++|.|++++.|.+++|++++.|++++.+.++++++++.|++++++.+++++++++++++
T Consensus         1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~   79 (79)
T cd03356           1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED   79 (79)
T ss_pred             CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence            3678888899999976 999999999999999999999999999999999999999999999999977788888877763

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.56  E-value=5e-14  Score=121.60  Aligned_cols=48  Identities=15%  Similarity=0.250  Sum_probs=26.7

Q ss_pred             eEEccCCEECCCcEEec--------cEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113          231 CTVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVHVCDEI  278 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~--------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~  278 (302)
                      +.|+++|.|+++++|..        ++||+++.|+++++|+.+++||+++.+++++
T Consensus        81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~  136 (262)
T PRK05289         81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNA  136 (262)
T ss_pred             EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcc
Confidence            55666666666666643        3456666665555555555555555444443

>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc

Probab=99.56  E-value=5.1e-14  Score=121.24  Aligned_cols=104  Identities=16%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEec-----
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS-----  247 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~-----  247 (302)
                      +++++.|.+++.|+++++|+++|.|+++++||++|.|++++.|.             +++|+++|.|+++|+|..     
T Consensus        20 I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~   99 (254)
T cd03351          20 IGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQG   99 (254)
T ss_pred             ECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCC
Confidence            33444444444444444555555555556666666666666664             467888888888888853     


Q ss_pred             ---cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          248 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       248 ---~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                         ++||+++.|+++++|..++.||+++.+++++.+..+++++.+
T Consensus       100 ~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~  144 (254)
T cd03351         100 GGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDY  144 (254)
T ss_pred             CCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCC
Confidence               677888888877777777777776666666555544444433

It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.

>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.56  E-value=4.7e-14  Score=118.78  Aligned_cols=108  Identities=18%  Similarity=0.297  Sum_probs=87.9

Q ss_pred             cEEEEEecCCCCCChHHHHHc--HhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHc-----CCcEEEEEEeCCCCCC-
Q 022113           14 IKIICSQETEPLGTAGPLALA--RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVTKVDEPSK-   85 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a--~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~-----~~~~~l~~~~~~~~~~-   85 (302)
                      ..+.+..+++.+|||++++..  ++.+    +++|++++||++++.|+.+++++|+++     ++++|+++.+.+++.. 
T Consensus        77 ~~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~  152 (217)
T cd04197          77 MIVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT  152 (217)
T ss_pred             ceEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc
Confidence            568888888899999999654  4444    268999999999999999999999874     7788888888766542 


Q ss_pred             -----cceEEEeCCCCcEEEEEecCCCCC--------------------CCeEEEEEEEeCHhhH
Q 022113           86 -----YGVVVMEESTGKVEKFVEKPKLFV--------------------GNKINAGIYLLNPAVL  125 (302)
Q Consensus        86 -----~g~v~~d~~~~~v~~~~ekp~~~~--------------------~~~~~~Giy~~~~~~l  125 (302)
                           ++++.+|+.+++++.|.|||..+.                    +++.++|+|+|+++++
T Consensus       153 ~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl  217 (217)
T cd04197         153 RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL  217 (217)
T ss_pred             ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence                 578888864589999999986542                    6789999999999864

N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.56  E-value=9.6e-14  Score=123.07  Aligned_cols=104  Identities=17%  Similarity=0.258  Sum_probs=45.0

Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccC
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG  236 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~  236 (302)
                      +.-+.+|...+.....++..... ....+++.+.|.+++.+++++.|+++|.|+++++||++|.|++++.|. ++.|+++
T Consensus        67 ~~~v~~p~~~~~~~~~~~~~~~~-~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~  145 (324)
T TIGR01853        67 ALVVKDPYLAFAKVAELFDPPPK-REAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG  145 (324)
T ss_pred             EEEECCHHHHHHHHHHHhccccc-ccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence            45567776655543333322111 123344444444444444444444444444444444444444444442 3444444


Q ss_pred             CEECCCcEEe-ccEECCCCEECCCcEE
Q 022113          237 VRIKKHACIS-SSIIGWHSTVGQWARV  262 (302)
Q Consensus       237 ~~i~~~~~i~-~~~i~~~~~i~~~~~i  262 (302)
                      |.|+++++|. +++||++|.|++++.|
T Consensus       146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI  172 (324)
T TIGR01853       146 SRIHPNVVIYERVQLGKNVIIHSGAVI  172 (324)
T ss_pred             ceECCCcEECCCCEECCCCEECCCcEE
Confidence            4444444443 3444444444444333

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=99.56  E-value=1.2e-13  Score=117.27  Aligned_cols=149  Identities=23%  Similarity=0.324  Sum_probs=105.0

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCC--CCcceEE
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVV   90 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~v~   90 (302)
                      ++.+.+..+.++.|++++++.+++++ .   ++|++++||++++.   ++++.|.+.+++.++++.+..+.  ..++...
T Consensus        67 ~~~~~~~~~~~~~g~~~s~~~~~~~~-~---~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (229)
T cd02523          67 NIKFVYNPDYAETNNIYSLYLARDFL-D---EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL  139 (229)
T ss_pred             CeEEEeCcchhhhCcHHHHHHHHHHc-C---CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee
Confidence            44444444445799999999999998 3   68999999999865   46677777788888888764322  2344332


Q ss_pred             EeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhccC---------CCCCccccchHHHHhcCcEEEEEec-CeeE
Q 022113           91 MEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGKLFAMVLP-GFWM  159 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~~~~~~l~~~~~v~~~~~~-g~~~  159 (302)
                      .+  .++++.+.+||.... ..+.++|+|+|++++|+.+..         +......++++.++++.++.++.+. ++|.
T Consensus       140 ~~--~~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~~~w~  217 (229)
T cd02523         140 DD--AGVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWY  217 (229)
T ss_pred             cC--ccceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCCCCEE
Confidence            22  368999999986543 468999999999999876632         1222334667777774454444332 8999


Q ss_pred             ecCChHHHHHH
Q 022113          160 DIGQPRDYITG  170 (302)
Q Consensus       160 digt~~~~~~a  170 (302)
                      |++++++|.+|
T Consensus       218 dI~~~ed~~~a  228 (229)
T cd02523         218 EIDDLEDLERA  228 (229)
T ss_pred             EeCCHHHHHhh
Confidence            99999999876

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.56  E-value=6.1e-14  Score=120.75  Aligned_cols=72  Identities=11%  Similarity=0.116  Sum_probs=38.6

Q ss_pred             cEECCCCEECCCcEEe--------ceEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          214 VAVGPGCVVESGVRLS--------RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      ++||++|.|++++.|.        ++.|++++.|++++.| ++|+|++++.|++++.+..+++||+++.|+.++.+.+++
T Consensus        77 v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v  156 (254)
T TIGR01852        77 LIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFV  156 (254)
T ss_pred             EEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCc
Confidence            4455555555555553        2345555555555555 345566666666666555556666655555555544444


Q ss_pred             E
Q 022113          285 V  285 (302)
Q Consensus       285 v  285 (302)
                      .
T Consensus       157 ~  157 (254)
T TIGR01852       157 R  157 (254)
T ss_pred             E
Confidence            3

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=99.55  E-value=2.9e-14  Score=118.56  Aligned_cols=107  Identities=24%  Similarity=0.447  Sum_probs=88.4

Q ss_pred             cCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEE
Q 022113           21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK  100 (302)
Q Consensus        21 ~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~  100 (302)
                      |++++|||+|+++|++++....+++|++++||++++.++.++++.|+++++++|+++.                      
T Consensus        89 ~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------------------  146 (200)
T cd02508          89 GDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------------------  146 (200)
T ss_pred             CCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh----------------------
Confidence            3568999999999999985422378999999999999999999999988888876664                      


Q ss_pred             EEecCCCCCCCeEEEEEEEeCHhhHh-hccC----CCCCccccchHHHHhcCcEEEEEecCeeEec
Q 022113          101 FVEKPKLFVGNKINAGIYLLNPAVLD-RIEL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI  161 (302)
Q Consensus       101 ~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~g~~~di  161 (302)
                                  +++|+|+|++++|. .++.    +..+...++++.+++++++.+|.++|+|.|+
T Consensus       147 ------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di  200 (200)
T cd02508         147 ------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI  200 (200)
T ss_pred             ------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence                        68899999999984 3432    2334556888889988999999999999986

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.55  E-value=5.7e-14  Score=119.99  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=74.0

Q ss_pred             ccCceEecceEEcCCcEECCCCEEC-----CCcEECCCCEECCCcEEec-eEEccCCEECCCcEEe---------ccEEC
Q 022113          187 ATGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIG  251 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~  251 (302)
                      .+++.|.|++++++++.|+++++|.     .+++|+++|.|+.++.|.+ +.|+++|+|++++.|+         +++|+
T Consensus       101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg  180 (272)
T PRK11830        101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE  180 (272)
T ss_pred             cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence            3345555555555555555555554     3556667777777777664 5777778887777764         37899


Q ss_pred             CCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          252 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ++|.||.++.|.++++||++++|++++++.+++.+.+
T Consensus       181 Dnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~  217 (272)
T PRK11830        181 DNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYD  217 (272)
T ss_pred             CCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECc
Confidence            9999999999999999999999999999888776554

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.55  E-value=6.8e-14  Score=98.85  Aligned_cols=80  Identities=25%  Similarity=0.495  Sum_probs=71.8

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      +|++++.|++++.|. ++.|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++++ .+++|+++++|++
T Consensus         1 ~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v-~~~ii~~~~~i~~   78 (81)
T cd04652           1 LVGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL-KDCLVGSGYRVEA   78 (81)
T ss_pred             CccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEE-ccCEECCCcEeCC
Confidence            367888889999886 79999999999999999999999999999999999999999999999999 6688888888877


Q ss_pred             ce
Q 022113          277 EI  278 (302)
Q Consensus       277 ~~  278 (302)
                      ++
T Consensus        79 ~~   80 (81)
T cd04652          79 GT   80 (81)
T ss_pred             CC
Confidence            64

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.54  E-value=1.1e-13  Score=128.99  Aligned_cols=160  Identities=21%  Similarity=0.298  Sum_probs=112.3

Q ss_pred             CCcEE-EEEecCCCCCChHHHHHcHhhhcc--CCCCcEEEEeCCeecC--cCHHHHHHHH---HHcCCcEEEEEEeCCCC
Q 022113           12 LGIKI-ICSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISE--YPFAEMIEFH---KAHGGEASIMVTKVDEP   83 (302)
Q Consensus        12 ~g~~i-~~~~~~~~~Gt~~al~~a~~~i~~--~~~~~~lv~~gD~l~~--~~l~~~~~~~---~~~~~~~~l~~~~~~~~   83 (302)
                      ++.+. .|+.|+.++|||+|+..|..++..  ..++.++|++||+++.  .+|.++++.+   .+.++.+|+.+.+..+.
T Consensus        70 ~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~  149 (468)
T TIGR01479        70 IGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPE  149 (468)
T ss_pred             cCCCcceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCC
Confidence            45553 699999999999999998877732  1124588999998653  3488887764   34456777888777777


Q ss_pred             CCcceEEEeC-----CCCcEEEEEecCCCCC--------CCeEEEEEEEeCH------------hhHhhccC-----CC-
Q 022113           84 SKYGVVVMEE-----STGKVEKFVEKPKLFV--------GNKINAGIYLLNP------------AVLDRIEL-----RP-  132 (302)
Q Consensus        84 ~~~g~v~~d~-----~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~------------~~l~~l~~-----~~-  132 (302)
                      ..||++..++     +.++|..|.|||+...        ..++|+|+|+|++            ++++.+..     .. 
T Consensus       150 t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~  229 (468)
T TIGR01479       150 TGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPD  229 (468)
T ss_pred             CCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCC
Confidence            8999999873     1368999999997531        3689999999994            44433321     00 


Q ss_pred             ---CCccccchH---------H-HHhcCcEEEEEecCeeEecCChHHHHHHH
Q 022113          133 ---TSIEKEVFP---------K-IALEGKLFAMVLPGFWMDIGQPRDYITGL  171 (302)
Q Consensus       133 ---~~~~~~~~~---------~-l~~~~~v~~~~~~g~~~digt~~~~~~a~  171 (302)
                         ..+..+.|+         . +.+..++.+.+.+..|.|+|+++++++..
T Consensus       230 ~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~  281 (468)
T TIGR01479       230 LDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS  281 (468)
T ss_pred             cccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence               111123444         2 23345788888888999999999998864

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase

Probab=99.53  E-value=1.5e-13  Score=118.34  Aligned_cols=101  Identities=13%  Similarity=0.204  Sum_probs=52.9

Q ss_pred             cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEe--------
Q 022113          188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACIS--------  246 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------  246 (302)
                      +.+.|.+++.|++++.|+++|.|.++++||++|.|+++++|.             +++|+++|.|+++|+|.        
T Consensus        21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~  100 (254)
T TIGR01852        21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG  100 (254)
T ss_pred             CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence            333333344444444444444444455555666666666664             35666667666666664        


Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      .++||+++.|+.++.|..++.||+++.+++++.+..++++++
T Consensus       101 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd  142 (254)
T TIGR01852       101 VTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGD  142 (254)
T ss_pred             cEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECC
Confidence            245666666655555555555555555555444444444433

This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.53  E-value=1e-13  Score=97.38  Aligned_cols=78  Identities=21%  Similarity=0.366  Sum_probs=69.4

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      |+++++|+++|.|. ++.|+++|.|++++.|.++++++++.|+++++|.++++++++.|++++.++++++|++++++|+
T Consensus         2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~   79 (79)
T cd05787           2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD   79 (79)
T ss_pred             ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence            67888888889886 7999999999999999999999999999999999999999999999988887888888877764

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.9e-14  Score=131.85  Aligned_cols=95  Identities=23%  Similarity=0.395  Sum_probs=84.7

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEE
Q 022113          195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV  274 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v  274 (302)
                      +++-++.+.+.+.|.++.++.||.++.||.++.|.||+||.||+||.+++|.++.|+.+|.||++|.| ..++|+++++|
T Consensus       315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I-~~aii~d~v~i  393 (673)
T KOG1461|consen  315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRI-DHAIICDDVKI  393 (673)
T ss_pred             ccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceE-eeeEeecCcEe
Confidence            77778889999999999999999999999999999999999999999999999999999999999999 55888888888


Q ss_pred             CCceEEcCCeEecCcc
Q 022113          275 CDEIYSNGGVVLPHKE  290 (302)
Q Consensus       275 ~~~~~v~~~~v~~~~~  290 (302)
                      ++|+.+.+|+|++.+.
T Consensus       394 ~~~~~l~~g~vl~~~V  409 (673)
T KOG1461|consen  394 GEGAILKPGSVLGFGV  409 (673)
T ss_pred             CCCcccCCCcEEeeee
Confidence            8877777766655444

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=99.53  E-value=7.9e-14  Score=120.27  Aligned_cols=107  Identities=21%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCCCEECCCcE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR  261 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~  261 (302)
                      ..+++.+.|.+++.+++++.||++++|++++.||++|.|++++.|. ++.||++|.|.+++.|.+ +.||++|.|.+++.
T Consensus       100 ~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~Gav  179 (338)
T COG1044         100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAV  179 (338)
T ss_pred             cccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCE
Confidence            4455555555555555555555555555555555555555555554 455566666665655543 66666666666666


Q ss_pred             Ec-------------------cCcEECCCcEECCceEEcCC----eEecCcc
Q 022113          262 VE-------------------NMTILGEDVHVCDEIYSNGG----VVLPHKE  290 (302)
Q Consensus       262 i~-------------------~~~~i~~~~~v~~~~~v~~~----~v~~~~~  290 (302)
                      |+                   ..++|++++.||+++.|..+    ++++.++
T Consensus       180 IG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~  231 (338)
T COG1044         180 IGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGV  231 (338)
T ss_pred             EccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCc
Confidence            54                   24788888888888888777    5565443

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.52  E-value=2.1e-13  Score=112.68  Aligned_cols=91  Identities=29%  Similarity=0.471  Sum_probs=58.5

Q ss_pred             CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEE
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTIL  268 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i  268 (302)
                      .+.+++++.+++++.|+++|.|++++.||++|.|++++.|.++.|+++|.|++++.+.++++++++.|++++.|.+++.|
T Consensus         9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~I   88 (193)
T cd03353           9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVL   88 (193)
T ss_pred             eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEE
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666656666


Q ss_pred             CCCcEECCceE
Q 022113          269 GEDVHVCDEIY  279 (302)
Q Consensus       269 ~~~~~v~~~~~  279 (302)
                      +++++|++++.
T Consensus        89 g~~~~Ig~~~~   99 (193)
T cd03353          89 GEGVHIGNFVE   99 (193)
T ss_pred             CCCCEECCcEE
Confidence            66665555443

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.52  E-value=1.4e-13  Score=118.71  Aligned_cols=60  Identities=32%  Similarity=0.497  Sum_probs=26.6

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEE
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  245 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  245 (302)
                      +++.+.|++.+.|++++.|+++|.|+++++||++|.|++++.|. ++.|+++|.|++++.|
T Consensus         5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I   65 (262)
T PRK05289          5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI   65 (262)
T ss_pred             cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence            34444444444444444444444444444444444444444444 3444444444444444

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=99.51  E-value=1.8e-13  Score=121.32  Aligned_cols=77  Identities=27%  Similarity=0.399  Sum_probs=41.6

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe------------------
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS------------------  246 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~------------------  246 (302)
                      +.+++.|++++.|++++.|+++|.|+++++||++|.|++++.|. +++|+++|.|+++|+|+                  
T Consensus       112 I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~  191 (324)
T TIGR01853       112 IGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIP  191 (324)
T ss_pred             ECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecC
Confidence            33334444444444444444444444455555555555555555 56666666666666663                  


Q ss_pred             ---ccEECCCCEECCCcEE
Q 022113          247 ---SSIIGWHSTVGQWARV  262 (302)
Q Consensus       247 ---~~~i~~~~~i~~~~~i  262 (302)
                         .++|++++.||++++|
T Consensus       192 ~~G~vvIgd~v~IGa~~~I  210 (324)
T TIGR01853       192 QIGRVIIEDDVEIGANTTI  210 (324)
T ss_pred             ccceEEECCCcEECCCCEE
Confidence               2556666666666555

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.51  E-value=1.7e-13  Score=104.15  Aligned_cols=98  Identities=14%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE  263 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~  263 (302)
                      ..+.+++.|++++.|+++++|++++.|+++++||++|.|++++.+.++.+.. ..+..++.+++++++++++|++++.+.
T Consensus         5 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~~~~~~~~Ig~~~~Ig~~~~v~   83 (119)
T cd03358           5 CIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR-SKIYRKWELKGTTVKRGASIGANATIL   83 (119)
T ss_pred             CEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc-cccccccccCCcEECCCcEECcCCEEe
Confidence            3455556666666666666666666666666666666666666665543333 333446678889999999999999998


Q ss_pred             cCcEECCCcEECCceEEcC
Q 022113          264 NMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       264 ~~~~i~~~~~v~~~~~v~~  282 (302)
                      +++.|++++.|++++.+..
T Consensus        84 ~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          84 PGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             CCcEECCCCEEccCCEEeC
Confidence            8888888888888877754

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.50  E-value=7.7e-13  Score=106.63  Aligned_cols=99  Identities=18%  Similarity=0.320  Sum_probs=80.1

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECC----CcEECCCCEECCCcEEe-----ceEEccCCEECCCcEEec-cEEC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIG  251 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~  251 (302)
                      ..+.+++++.+.+++.+++++.|+++|.|+.    +++||++|.|++++.|.     ++.|++++.|++++.+.+ ++|+
T Consensus         7 ~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig   86 (167)
T cd00710           7 PSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIG   86 (167)
T ss_pred             CCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEEC
Confidence            3456777777777788888888888888765    36889999999999884     578999999999999965 8999


Q ss_pred             CCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          252 WHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      ++++|+.++.|. ++.||+++.|++++.+.
T Consensus        87 ~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~  115 (167)
T cd00710          87 DNCFIGFRSVVF-NAKVGDNCVIGHNAVVD  115 (167)
T ss_pred             CCCEECCCCEEE-CCEECCCCEEcCCCEEe
Confidence            999999998884 57888888888877764

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.50  E-value=3.2e-13  Score=115.66  Aligned_cols=15  Identities=13%  Similarity=0.060  Sum_probs=8.2

Q ss_pred             eEEccCCEECCCcEE
Q 022113          231 CTVMRGVRIKKHACI  245 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i  245 (302)
                      ..|++++.|+++++|
T Consensus        78 v~IG~~~~I~e~vtI   92 (255)
T PRK12461         78 LEIGDRNVIREGVTI   92 (255)
T ss_pred             eEECCceEECCccEE
Confidence            345555555555555

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.49  E-value=8.2e-13  Score=101.42  Aligned_cols=97  Identities=20%  Similarity=0.279  Sum_probs=64.8

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-----c----cEECCCCE
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-----S----SIIGWHST  255 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~----~~i~~~~~  255 (302)
                      +.+++.|...+.|++++.|.++++|..++.||++|.|..  +|. +++|+++|.|++++.|.     .    ..||++++
T Consensus         4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~   81 (147)
T cd04649           4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCL   81 (147)
T ss_pred             ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCE
Confidence            445555555555555555555555555555555555541  121 35667777777766663     3    67889999


Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ||+++.|  ++.||+++.|++|+++..++.+
T Consensus        82 IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i  110 (147)
T cd04649          82 LGANSGI--GISLGDNCIVEAGLYVTAGTKV  110 (147)
T ss_pred             ECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence            9999988  5899999999999988888864

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=99.49  E-value=4.2e-13  Score=120.48  Aligned_cols=42  Identities=26%  Similarity=0.461  Sum_probs=26.4

Q ss_pred             cceEEEeCCC-CcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhc
Q 022113           86 YGVVVMEEST-GKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus        86 ~g~v~~d~~~-~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l  128 (302)
                      +|+..++++. +.+ .|.++|+... .....++.+++++++.+.+
T Consensus        25 ~gva~l~~a~~~~L-sFl~~~k~~~~l~~~~A~a~Iv~~d~~~~~   68 (343)
T PRK00892         25 TGVASLEEAGPGQI-SFLANPKYRKQLATTKAGAVIVSPDDAEFV   68 (343)
T ss_pred             EeecccccCCCCeE-EEEcCchhHHHHhccCCeEEEechhhhhhc
Confidence            4555565433 455 5888876532 3456789999998765444

>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA

Probab=99.49  E-value=7.1e-13  Score=103.59  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=19.4

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  228 (302)
                      .+.+++.|.+.+++++++.||+++.|.++++|++++.||++|.|
T Consensus        15 ~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I   58 (139)
T cd03350          15 FIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHL   58 (139)
T ss_pred             EECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEE
Confidence            34444444444444444444444444444444444444444444

It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.48  E-value=2.8e-13  Score=110.68  Aligned_cols=110  Identities=16%  Similarity=0.259  Sum_probs=86.5

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------------ceEEccCCEECCC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------------RCTVMRGVRIKKH  242 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~  242 (302)
                      ..+.+.+++.|+|.++|+++++|+++++|+++++|...|.||.+++|.                   ..+||++|.|+++
T Consensus        14 ~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~   93 (260)
T COG1043          14 PGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREF   93 (260)
T ss_pred             CCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeE
Confidence            345666667777777777777777777777777777777777777662                   4578888999988


Q ss_pred             cEEe--------ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          243 ACIS--------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       243 ~~i~--------~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      ++|.        -+.||++..+-+|++|..+|+||++|.+..++.++..+.+++..+
T Consensus        94 vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~ai  150 (260)
T COG1043          94 VTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAI  150 (260)
T ss_pred             EEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEE
Confidence            8883        277999999999999999999999999999999888887776654

>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain

Probab=99.48  E-value=1e-12  Score=108.28  Aligned_cols=104  Identities=19%  Similarity=0.267  Sum_probs=94.4

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEEc
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVE  263 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~  263 (302)
                      +.....+++.+.+++++.++++|.|+++++|++++.||+++.|. +++|++++.|+++|.++ ++++..++.|+++++|+
T Consensus        81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig  160 (197)
T cd03360          81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG  160 (197)
T ss_pred             CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence            44457788899999999999999999999999999999999996 89999999999999994 68999999999999999


Q ss_pred             cCcEECCCcEECCceEEcCCeEecCc
Q 022113          264 NMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       264 ~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      .++.|.++++|++++.+++++++...
T Consensus       161 ~~~~v~~~~~ig~~~~v~~~~~v~~~  186 (197)
T cd03360         161 AGATIIQGVTIGAGAIIGAGAVVTKD  186 (197)
T ss_pred             CCCEEcCCCEECCCCEECCCCEEcCC
Confidence            99999999999999999999987654

The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.

>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional

Probab=99.48  E-value=4.2e-13  Score=114.93  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=44.7

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-------------ccEEC
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-------------SSIIG  251 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~  251 (302)
                      +++.+.|++++.+++++.|+++|.|++++.||++|+|++++.|. ++.|+++|.|++++.|+             ..+||
T Consensus         2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG   81 (255)
T PRK12461          2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG   81 (255)
T ss_pred             cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence            44555566666666666666666666666666666666666665 45666666666665554             24455


Q ss_pred             CCCEECCCcEE
Q 022113          252 WHSTVGQWARV  262 (302)
Q Consensus       252 ~~~~i~~~~~i  262 (302)
                      +++.|+++++|
T Consensus        82 ~~~~I~e~vtI   92 (255)
T PRK12461         82 DRNVIREGVTI   92 (255)
T ss_pred             CceEECCccEE
Confidence            55555555544

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=99.48  E-value=1.1e-12  Score=111.32  Aligned_cols=151  Identities=21%  Similarity=0.357  Sum_probs=114.0

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      ..++++.++...|+++++++|++++..+ .++|++++||.  +.+.++.++++.|.+.+.++++...+..++..||.+..
T Consensus        62 ~~~~~~~~~~~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  140 (229)
T cd02540          62 PNVEFVLQEEQLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR  140 (229)
T ss_pred             CCcEEEECCCCCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE
Confidence            3466777888899999999999998531 36899999998  33567999999998877778888888778888998877


Q ss_pred             eCCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhcC-cEEEEEecCe--
Q 022113           92 EESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGF--  157 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~~-~v~~~~~~g~--  157 (302)
                      ++ ++++..+.|+|....    ..++++|+|+|+++.| +.++..      ......+.++.+++.+ ++.++.++|+  
T Consensus       141 ~~-~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~  219 (229)
T cd02540         141 DG-NGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEE  219 (229)
T ss_pred             cC-CCCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcce
Confidence            75 689999999875321    2688999999998755 445421      1112345677777664 6899999875  


Q ss_pred             eEecCChHH
Q 022113          158 WMDIGQPRD  166 (302)
Q Consensus       158 ~~digt~~~  166 (302)
                      |+.+++|.+
T Consensus       220 ~~~~~~~~~  228 (229)
T cd02540         220 VLGVNDRVQ  228 (229)
T ss_pred             EecCCChHh
Confidence            688889876

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.48  E-value=8.3e-13  Score=109.51  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe----------------
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS----------------  246 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~----------------  246 (302)
                      ...+++++.+. ++.|++++.|+++|.|. +++||++|.|++++.|.++.||++|.|++++.+.                
T Consensus         8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~   85 (204)
T TIGR03308         8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY   85 (204)
T ss_pred             CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence            34678888886 47899999999999995 8999999999999999999999999999998884                


Q ss_pred             ----------------------ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          247 ----------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       247 ----------------------~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                                            +++|+++++||.++.|.+++.||+++.|++++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~  142 (204)
T TIGR03308        86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT  142 (204)
T ss_pred             ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence                                  34455555555555555555555555555555533

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.47  E-value=7.2e-13  Score=112.26  Aligned_cols=94  Identities=22%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             ccccccCceEecceE-----EcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc--------cCCEECCCcEEec-
Q 022113          183 SLKLATGANIVGNVL-----VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM--------RGVRIKKHACISS-  247 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~-----i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~--------~~~~i~~~~~i~~-  247 (302)
                      .+.+.+++.|++++.     +..++.||++|.|.++++||++|.||++|.|. ++.|+        +++.|+++|.|+. 
T Consensus       106 ~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~  185 (269)
T TIGR00965       106 GAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGAR  185 (269)
T ss_pred             CcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCC
Confidence            344444444444443     33446677777777667777777777777665 23332        3344444444432 


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      ++|.+++.|+.++.|+.+++|+++++|.+
T Consensus       186 a~I~~GV~IG~gavIGaGavI~~~~~I~~  214 (269)
T TIGR00965       186 SEIVEGVIVEEGSVISMGVFIGQSTKIYD  214 (269)
T ss_pred             CEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence            44444444554444444444444444444

The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.46  E-value=1.6e-12  Score=108.56  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=10.0

Q ss_pred             CcEECCCcEECCceEEcCCeEec
Q 022113          265 MTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       265 ~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      ++.|++++.|+.++.+.+++.++
T Consensus       150 ~~~Ig~~~~ig~~~~v~~~~~ig  172 (205)
T cd03352         150 STTIGDNVIIGGQVGIAGHLTIG  172 (205)
T ss_pred             ccEECCCeEEcCCCEEeCCcEEC
Confidence            34444444444444444444333

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=99.45  E-value=2.3e-12  Score=106.89  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEEc
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVE  263 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~  263 (302)
                      +...+.+.+.+.+++++.||+++.|+++++|++++.||++|.|. +++|++++.|++++.++ ++.++.++.|+++++|+
T Consensus        84 ~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig  163 (201)
T TIGR03570        84 YRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIG  163 (201)
T ss_pred             CcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEEC
Confidence            44456677888888888888888888888888888998888886 78888888888888885 57778888888888888


Q ss_pred             cCcEECCCcEECCceEEcCCeEecC
Q 022113          264 NMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       264 ~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      .++.+.+++.+++++.+++++++..
T Consensus       164 ~~~~v~~~~~i~~~~~i~~~~~v~~  188 (201)
T TIGR03570       164 AGATIIQGVTIGAGAIVGAGAVVTK  188 (201)
T ss_pred             CCCEEeCCCEECCCCEECCCCEECC
Confidence            8888888888888888887777644

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E

Probab=99.45  E-value=1.3e-12  Score=104.08  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=8.1

Q ss_pred             CCCCEECCCcEEeceEEccCCEE
Q 022113          217 GPGCVVESGVRLSRCTVMRGVRI  239 (302)
Q Consensus       217 g~~~~i~~~~~i~~~~i~~~~~i  239 (302)
                      +++|.|+.++.+.+++|+++|.|
T Consensus        65 g~~~~Ig~~~~i~~~~Ig~~~~I   87 (155)
T cd04745          65 EENGHIGHGAILHGCTIGRNALV   87 (155)
T ss_pred             cCCCEECCCcEEECCEECCCCEE
Confidence            33333333333333333333333

coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=99.43  E-value=5.1e-12  Score=107.91  Aligned_cols=155  Identities=19%  Similarity=0.251  Sum_probs=108.4

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCC-cEEEEEEeCCC-----
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMVTKVDE-----   82 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~-~~~l~~~~~~~-----   82 (302)
                      .+++++.+..+..+.||++ +..++..+.   .+.|++++||.  +.+.++.++++.|.+.+. ++++++.+.+.     
T Consensus        61 ~~~~~v~~~~~~~~~g~~~-~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (238)
T PRK13368         61 AFGGKVVMTSDDHLSGTDR-LAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFE  136 (238)
T ss_pred             HcCCeEEecCccCCCccHH-HHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhc
Confidence            4688887777777889984 777777763   26899999997  556779999998876543 55555654432     


Q ss_pred             -CCCcceEEEeCCCCcEEEEEecCCC------CCCCeEEEEEEEeCHhhHhhccCCC-CC---ccc-cchHHHH-hcCcE
Q 022113           83 -PSKYGVVVMEESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELRP-TS---IEK-EVFPKIA-LEGKL  149 (302)
Q Consensus        83 -~~~~g~v~~d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l~~~~-~~---~~~-~~~~~l~-~~~~v  149 (302)
                       +..+++ .+++ +|+++.|.|+|..      ....+.++|+|+|++++|..++... ..   +.. +++ .++ ...++
T Consensus       137 ~p~~~~~-~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v  213 (238)
T PRK13368        137 SPNVVKV-VVDK-NGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKI  213 (238)
T ss_pred             CcCCCEE-EECC-CCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCce
Confidence             444554 4443 6899999875421      1134789999999999998875311 11   111 334 444 44569


Q ss_pred             EEEEecCeeEecCChHHHHHHHH
Q 022113          150 FAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       150 ~~~~~~g~~~digt~~~~~~a~~  172 (302)
                      .++..+++|+||++|++|..++.
T Consensus       214 ~~~~~~~~~~DI~t~~Dl~~a~~  236 (238)
T PRK13368        214 RMVEVAATSIGVDTPEDLERVRA  236 (238)
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHH
Confidence            99988999999999999998865

>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase

Probab=99.43  E-value=3.5e-12  Score=105.43  Aligned_cols=60  Identities=22%  Similarity=0.482  Sum_probs=30.6

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      .+++++.|.+++.|++++.|+++|.|+ ++.|+++|.|++++.|.++++++++.|++++.|
T Consensus        23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I   82 (193)
T cd03353          23 VIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHL   82 (193)
T ss_pred             EECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEE
Confidence            344444444444444444444444443 225556666666555555555555555555554

It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.

>TIGR02287 PaaY phenylacetic acid degradation protein PaaY

Probab=99.41  E-value=2.5e-12  Score=105.41  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEE-----eccEECCCCEECCCcEE
Q 022113          201 SAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARV  262 (302)
Q Consensus       201 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i  262 (302)
                      ++.|++++.|.++++||++|.|+++|.|.    ..+|+++|.|+++|+|     .+++|++++.|++++.|
T Consensus        14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I   84 (192)
T TIGR02287        14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAIL   84 (192)
T ss_pred             CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEE
Confidence            33333333333344444444444444443    3455555555555555     23555555555554443

Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.

>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase

Probab=99.40  E-value=2.6e-12  Score=108.46  Aligned_cols=29  Identities=14%  Similarity=0.142  Sum_probs=10.8

Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      |+.+++|+.+++|.++++|++++++++++
T Consensus       163 IGd~v~IG~gsvI~~g~~Ig~~~~Igags  191 (231)
T TIGR03532       163 IEDNVLIGANAVILEGVRVGKGAVVAAGA  191 (231)
T ss_pred             ECCCcEECCCCEEcCCCEECCCCEECCCC
Confidence            33333333333333333333333333333

Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.

>PRK13627 carnitine operon protein CaiE; Provisional

Probab=99.40  E-value=3.5e-12  Score=104.93  Aligned_cols=86  Identities=23%  Similarity=0.335  Sum_probs=44.0

Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccCcEEC
Q 022113          199 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMTILG  269 (302)
Q Consensus       199 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~i~  269 (302)
                      ++++.|++++.|.++++||++|.|+++++|.    .++|+++|.|+++|+|+     +++|++++.|++++.+ .+++||
T Consensus        14 ~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i-~g~vIG   92 (196)
T PRK13627         14 HPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL-HGCVIG   92 (196)
T ss_pred             CCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE-eeEEEC
Confidence            3334444444444444444444444444443    24566666666666663     3667777777666554 334455


Q ss_pred             CCcEECCceEEcCCeE
Q 022113          270 EDVHVCDEIYSNGGVV  285 (302)
Q Consensus       270 ~~~~v~~~~~v~~~~v  285 (302)
                      +++.||.++.+.++++
T Consensus        93 ~~v~IG~ga~V~~g~~  108 (196)
T PRK13627         93 RDALVGMNSVIMDGAV  108 (196)
T ss_pred             CCCEECcCCccCCCcE
Confidence            5554444444333333

>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family

Probab=99.39  E-value=4.1e-12  Score=105.35  Aligned_cols=66  Identities=12%  Similarity=0.166  Sum_probs=54.9

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE  263 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~  263 (302)
                      .+++++.|+++|.|. ++.||+++.|+++|.|.++.||+++.|++++.+.+++||++|.|+++++|.
T Consensus         4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~   69 (204)
T TIGR03308         4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN   69 (204)
T ss_pred             ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence            356777788888884 588888999999999999999999999999998888888888888887764

This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.39  E-value=3e-12  Score=94.78  Aligned_cols=79  Identities=23%  Similarity=0.428  Sum_probs=58.3

Q ss_pred             cEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          202 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      +.|++++.| .+++||++|.|+ ++.|.+|+++++|.|++++.|.+|++++++.|+.++.+ .+++|+++++|++++.+.
T Consensus         2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~   78 (104)
T cd04651           2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIG   78 (104)
T ss_pred             ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEEECCCCEECCCCEEC
Confidence            345666666 357777777777 77777777788888887788877778888888877777 567777777777777776


Q ss_pred             CC
Q 022113          282 GG  283 (302)
Q Consensus       282 ~~  283 (302)
                      +.
T Consensus        79 ~~   80 (104)
T cd04651          79 GD   80 (104)
T ss_pred             CC
Confidence            55

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.39  E-value=4.6e-12  Score=101.64  Aligned_cols=27  Identities=11%  Similarity=0.164  Sum_probs=10.6

Q ss_pred             CCEECCCcEEeceEEccCCEECCCcEE
Q 022113          219 GCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       219 ~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      ++.|+.++.|.+++|+++|.|+.++.|
T Consensus        72 ~~~i~~~~~i~~~~IGd~~~Ig~~a~I   98 (164)
T cd04646          72 NNVFEVGCKCEALKIGNNNVFESKSFV   98 (164)
T ss_pred             CCEECCCcEEEeeEECCCCEEeCCCEE
Confidence            333333333334444444444443333

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.39  E-value=4.6e-12  Score=108.38  Aligned_cols=99  Identities=18%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             cccCceEecceEEcCCcEECCCCEECCCcEECCCCE-ECCCcE---Ee-ceEEccCCEECCCcEE-----ec----cEEC
Q 022113          186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACI-----SS----SIIG  251 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i-----~~----~~i~  251 (302)
                      +++++.|.+.+.|.+++.||+||+|.++++|+.++. +|+.+.   |. .++|+++|.||.+|.|     ++    +.||
T Consensus       175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IG  254 (341)
T TIGR03536       175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVG  254 (341)
T ss_pred             ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEEC
Confidence            344555555666666666666666666666666666 554444   33 4666666666666666     34    6788


Q ss_pred             CCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          252 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ++|.||.++.|  +..||++|+|++|++|.+++.+
T Consensus       255 e~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       255 EGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             CCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            89999999998  7899999999999999998863

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain

Probab=99.37  E-value=6.6e-12  Score=95.38  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=64.7

Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEE----------CCCCEECCCcEEccCcE
Q 022113          199 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSII----------GWHSTVGQWARVENMTI  267 (302)
Q Consensus       199 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i----------~~~~~i~~~~~i~~~~~  267 (302)
                      ++++.|++++.|+++++||++|.|++++.|. ++.|+++|.|++++.+.++.+          ..++.|++++.|+.+++
T Consensus         2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~   81 (119)
T cd03358           2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT   81 (119)
T ss_pred             CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence            4556666666666666666666666666664 567777777777777755332          45678888898888888


Q ss_pred             ECCCcEECCceEEcCCeEecC
Q 022113          268 LGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       268 i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      +.+++++++++.+++++++..
T Consensus        82 v~~~~~ig~~~~i~~~~~v~~  102 (119)
T cd03358          82 ILPGVTIGEYALVGAGAVVTK  102 (119)
T ss_pred             EeCCcEECCCCEEccCCEEeC
Confidence            888888999988888887754

WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.36  E-value=1.9e-11  Score=89.80  Aligned_cols=84  Identities=23%  Similarity=0.236  Sum_probs=62.3

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      +++.+++++.|++++.|.+.++||+++.|++++.|. ++.|+++|.|+.  .+.+|++++++.++.++.|+ +++||+++
T Consensus        10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v   86 (101)
T cd05635          10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC   86 (101)
T ss_pred             CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence            467777888888888887778888888888888777 477777777764  56777777777777777774 57777777


Q ss_pred             EECCceEE
Q 022113          273 HVCDEIYS  280 (302)
Q Consensus       273 ~v~~~~~v  280 (302)
                      .|++++..
T Consensus        87 ~ig~~~~~   94 (101)
T cd05635          87 NLGAGTNN   94 (101)
T ss_pred             EECCCcee
Confidence            77766544

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc

Probab=99.36  E-value=1.6e-11  Score=102.51  Aligned_cols=59  Identities=31%  Similarity=0.536  Sum_probs=25.2

Q ss_pred             ccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEE
Q 022113          187 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACI  245 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i  245 (302)
                      ++++.|.+++.|++++.|+++|.|+++++||++|.|++++.|.+ +.|+++|.|+++++|
T Consensus        11 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i   70 (205)
T cd03352          11 GPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI   70 (205)
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence            33333333333444444444444444444444444444444442 444444444444444

This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02296 carbonate dehydratase

Probab=99.35  E-value=1.1e-11  Score=106.65  Aligned_cols=104  Identities=19%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCC---EECCCcEEe-ceEEc----------cCCEECCCcEEec-cE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC---VVESGVRLS-RCTVM----------RGVRIKKHACISS-SI  249 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~---~i~~~~~i~-~~~i~----------~~~~i~~~~~i~~-~~  249 (302)
                      .+++++.|.+++.+..++.||++|.|.++++|...+   .||++|.|. +++|.          .++.||++++|+. |+
T Consensus        54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av  133 (269)
T PLN02296         54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV  133 (269)
T ss_pred             ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence            455556665555555555556666665555555443   555555555 34443          3455555555543 33


Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      + .+|.|++++.|+.+++|.++++|+++++|+++++++..
T Consensus       134 I-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~  172 (269)
T PLN02296        134 L-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN  172 (269)
T ss_pred             e-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence            3 44556666666666666666666666666666665544

>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition

Probab=99.35  E-value=1e-11  Score=98.67  Aligned_cols=26  Identities=12%  Similarity=0.004  Sum_probs=9.6

Q ss_pred             CCCCEECCCcEEeceEEccCCEECCC
Q 022113          217 GPGCVVESGVRLSRCTVMRGVRIKKH  242 (302)
Q Consensus       217 g~~~~i~~~~~i~~~~i~~~~~i~~~  242 (302)
                      ++++.|++++.+.+++|+++|.|+.+
T Consensus        65 g~~~~I~~~~~i~~~~Ig~~~~Ig~~   90 (154)
T cd04650          65 GDYVTIGHNAVVHGAKVGNYVIVGMG   90 (154)
T ss_pred             CCCCEECCCcEEECcEECCCCEEcCC
Confidence            33333333333333333333333333

It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.

>PRK10502 putative acyl transferase; Provisional

Probab=99.35  E-value=8.1e-12  Score=101.99  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=53.6

Q ss_pred             cEECCCCEECCCcEEe---ceEEccCCEECCCcEE----------------eccEECCCCEECCCcEEccCcEECCCcEE
Q 022113          214 VAVGPGCVVESGVRLS---RCTVMRGVRIKKHACI----------------SSSIIGWHSTVGQWARVENMTILGEDVHV  274 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i----------------~~~~i~~~~~i~~~~~i~~~~~i~~~~~v  274 (302)
                      ..||++|.|++++.|.   .+.|+++|.|++++.|                ...+||++|+||+++.|.+++.||+++.|
T Consensus        72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI  151 (182)
T PRK10502         72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV  151 (182)
T ss_pred             EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence            3444444444444443   3456666666666555                23578999999999999889999999999


Q ss_pred             CCceEE----cCCeE---ecCcccccc
Q 022113          275 CDEIYS----NGGVV---LPHKEIKSS  294 (302)
Q Consensus       275 ~~~~~v----~~~~v---~~~~~~~~~  294 (302)
                      ++++++    .++++   .|++.++..
T Consensus       152 ga~svV~~~v~~~~v~~G~Pa~~ik~r  178 (182)
T PRK10502        152 GARSSVFKSLPANTICRGNPAVPIRPR  178 (182)
T ss_pred             CCCCEEecccCCCcEEECCcceEeccc
Confidence            988884    34444   466665544

>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.34  E-value=1e-11  Score=87.15  Aligned_cols=74  Identities=16%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             EECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          215 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       215 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      +||+++.|++++.|.++.|+++|.|++++.|.++++++++.|+++++|. +++|+++++|++++.+.+++++.++
T Consensus         1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~v~~~   74 (79)
T cd05787           1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISFG   74 (79)
T ss_pred             CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCCEEeCC
Confidence            3677888888888888899999999999999999999999999999994 7889999999988888888877654

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=99.33  E-value=6.2e-12  Score=104.92  Aligned_cols=103  Identities=17%  Similarity=0.279  Sum_probs=91.7

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEe---------ccEECCC
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIGWH  253 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~  253 (302)
                      .++.|++.|+-.++|++|++|++.++|.=++.++.+|+|.-++++.. ..||.||+||.++.|.         .++|+++
T Consensus       109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn  188 (271)
T COG2171         109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN  188 (271)
T ss_pred             eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence            67888899998999999988888888877889999999998888874 6799999999999984         3789999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      |.||+++.+..++.+|++|+|++|++|.+++.+
T Consensus       189 cliGAns~~veGV~vGdg~VV~aGv~I~~~tki  221 (271)
T COG2171         189 CLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI  221 (271)
T ss_pred             cEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence            999999998899999999999999999999853

>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E

Probab=99.33  E-value=1.5e-11  Score=97.75  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=14.3

Q ss_pred             EEccCCEECCCcEEec-----cEECCCCEECCCcEE
Q 022113          232 TVMRGVRIKKHACISS-----SIIGWHSTVGQWARV  262 (302)
Q Consensus       232 ~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i  262 (302)
                      +|+++|.|+++++|..     ++|++++.|+.++.+
T Consensus        40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i   75 (153)
T cd04645          40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL   75 (153)
T ss_pred             EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE
Confidence            4444444444444433     244444444444443

coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.

>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site

Probab=99.33  E-value=4.4e-11  Score=96.41  Aligned_cols=100  Identities=16%  Similarity=0.207  Sum_probs=77.4

Q ss_pred             cccccCceEec----ceEEcCCcEECCCCEE----CCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEeccEECCCC
Q 022113          184 LKLATGANIVG----NVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       184 ~~~~~~~~i~~----~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      ..+.+++.|..    .+.|++++.|++++.|    +..+.||+++.|++++.|.. +.|+++|.|+.++.|.++.|++++
T Consensus        27 ~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~  106 (167)
T cd00710          27 VFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNC  106 (167)
T ss_pred             cEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCC
Confidence            34445555543    2456666666666666    33567788888888888884 999999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      .|++++.| .++.|++++.+++++++..+.
T Consensus       107 ~Ig~~s~i-~~~~i~~~~~v~~~~~v~~~~  135 (167)
T cd00710         107 VIGHNAVV-DGVEIPPGRYVPAGAVITSQT  135 (167)
T ss_pred             EEcCCCEE-eCCEeCCCCEECCCCEEcCCC
Confidence            99999999 568888888888888877655

They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.

>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional

Probab=99.32  E-value=2.9e-11  Score=103.45  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=42.4

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec---------------eEEccCCEECCCcEE-ec
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHACI-SS  247 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i-~~  247 (302)
                      +.+.+++.|.| .+++.++.|+++|.|++++.||++|.||++|.|..               ++|+++|.||.+|.| .+
T Consensus       116 a~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G  194 (272)
T PRK11830        116 AYIAPNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG  194 (272)
T ss_pred             CEECCCcEEEE-EEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC
Confidence            34445555442 34445555666666655555555555555555542               445555555555444 23


Q ss_pred             cEECCCCEECCCcEEccCcEECC
Q 022113          248 SIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      ++||+++.|++++.|.+++.|++
T Consensus       195 v~IGdgavIgag~vV~~gt~I~~  217 (272)
T PRK11830        195 VIVEEGSVLGMGVFLGQSTKIYD  217 (272)
T ss_pred             CEECCCCEEcCCCEEcCCeEECc
Confidence            44444444444444444444443

>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma

Probab=99.32  E-value=1.9e-11  Score=85.81  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=55.6

Q ss_pred             ECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          216 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       216 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      ||+++.|++++.|.+++|+++|.|++++.|.++++++++.|++++++ .+++|++++.|++++.+.++++++..
T Consensus         2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i-~~svv~~~~~i~~~~~i~~~~~ig~~   74 (79)
T cd03356           2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVI-VDSIIGDNAVIGENVRVVNLCIIGDD   74 (79)
T ss_pred             ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEE-ECCEECCCCEECCCCEEcCCeEECCC
Confidence            56677777777777777888888888888888888888888888888 45777788877777777666666543

Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.32  E-value=2.1e-11  Score=113.73  Aligned_cols=72  Identities=21%  Similarity=0.329  Sum_probs=62.9

Q ss_pred             eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe-ccEECCCCEECCCcEE
Q 022113          191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARV  262 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  262 (302)
                      .+++.+.|++++.|+++++|++++.||++|.|++++.|.+++|+++|.|++++.|. +++||++|.||+++.+
T Consensus       264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i  336 (446)
T PRK14353        264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV  336 (446)
T ss_pred             EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE
Confidence            45667788888888888888888888888888888888899999999999999997 7999999999998876

>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.31  E-value=2.1e-11  Score=89.54  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=65.0

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      .+.+.+++.+.+++++++++.|+++|.|+++++||++|.|+.  .|.+|+|++++.++++++|++++|++++.|++++.+
T Consensus        17 ~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~   94 (101)
T cd05635          17 DAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN   94 (101)
T ss_pred             CCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence            355667777777888888888888888888888888888875  577899999999999999999999999999988876

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.31  E-value=1.6e-11  Score=114.58  Aligned_cols=59  Identities=17%  Similarity=0.415  Sum_probs=26.4

Q ss_pred             cEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCc
Q 022113          202 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA  260 (302)
Q Consensus       202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~  260 (302)
                      +.|+++|.|++++.||++|.|++++.|.+++|++++.|.+++.+++++|+++|.||+++
T Consensus       320 ~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~  378 (450)
T PRK14360        320 VKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGT  378 (450)
T ss_pred             cEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccc
Confidence            33333333433444444444444444444444444444444444445555555555543

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.30  E-value=2.3e-11  Score=113.76  Aligned_cols=59  Identities=22%  Similarity=0.443  Sum_probs=28.3

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA  243 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~  243 (302)
                      +.+++++.|.+++.|++++.|+++|.|. +++|+++|.|++++.|.+|+|+++|.|++++
T Consensus       272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~  330 (456)
T PRK09451        272 VEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFA  330 (456)
T ss_pred             CEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCce
Confidence            3455555555555555555555555552 4444444444444444444444444443333

>COG1043 LpxA Acyl-[acyl carrier protein]

Probab=99.30  E-value=1.2e-11  Score=101.22  Aligned_cols=107  Identities=27%  Similarity=0.376  Sum_probs=65.9

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-------------ccE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-------------SSI  249 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~  249 (302)
                      +.++|.+.|.+.+.++++++||+-|+|++++.|+++|+|++.++|. .+.||.+++|-+.+.|+             ..+
T Consensus         4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~   83 (260)
T COG1043           4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLI   83 (260)
T ss_pred             cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEE
Confidence            4466666666666666666666666666666666666666666665 56677777777777664             256


Q ss_pred             ECCCCEECCCcEEccC-------cEECCCcEECCceEEcCCeEecCcc
Q 022113          250 IGWHSTVGQWARVENM-------TILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~-------~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      ||+++.|..+++|..+       +.||+++.+-+.+.|.-+|+++...
T Consensus        84 IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~  131 (260)
T COG1043          84 IGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNC  131 (260)
T ss_pred             ECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcE
Confidence            8888888888887432       4455554444444444444444443

>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport

Probab=99.29  E-value=5.5e-11  Score=95.26  Aligned_cols=95  Identities=18%  Similarity=0.295  Sum_probs=66.3

Q ss_pred             ccccccCceEecc---eEEcCCcEECCCCEECC------------CcEECCCCEECCCcEEeceEEccCCEECCCcEEec
Q 022113          183 SLKLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS  247 (302)
Q Consensus       183 ~~~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~  247 (302)
                      ...+++++.+.++   +.||+++.|+++|+|.+            +++||+++.|++++.+.++.|++++.|++++.|  
T Consensus        27 ~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I--  104 (161)
T cd03359          27 KTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI--  104 (161)
T ss_pred             ceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEE--
Confidence            4556677777764   57888888888888875            357888888888888888888888888877655  


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                         ++++.|++++.|+++++|.+++++++.+++..
T Consensus       105 ---g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g  136 (161)
T cd03359         105 ---GRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG  136 (161)
T ss_pred             ---cCCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence               44555555555555555566666666666543

Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.29  E-value=3.9e-11  Score=112.23  Aligned_cols=61  Identities=25%  Similarity=0.360  Sum_probs=38.2

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      +.+.+++.|++++.|++++.|+++|+|. +++||++|.|++++.|.+++|++++.|++++.+
T Consensus       275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i  335 (459)
T PRK14355        275 TTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL  335 (459)
T ss_pred             CEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence            3344455555555555566666666553 567777777777777777777777666655444

>PLN02472 uncharacterized protein

Probab=99.29  E-value=4.2e-11  Score=101.61  Aligned_cols=62  Identities=18%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             cccccCceEecc---eEEcCCcEECCCCEEC----------CCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113          184 LKLATGANIVGN---VLVHESAQIGEGCLIG----------PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       184 ~~~~~~~~i~~~---~~i~~~~~i~~~~~i~----------~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      +.+.+++.++++   +.||+++.|+++|+|.          ++++||++|.||++|.|.+|+|+++|.||.+|.|
T Consensus        84 a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI  158 (246)
T PLN02472         84 ASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSIL  158 (246)
T ss_pred             CEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEE
Confidence            344444544443   5556666666666663          2455666666666666555555555555555433

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=99.29  E-value=2.9e-11  Score=112.94  Aligned_cols=58  Identities=19%  Similarity=0.428  Sum_probs=30.9

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK  241 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~  241 (302)
                      .+.+++++.|.+++.|++++.|+++|.|. ++.|+++|.|++++.|.+++|+++|.|++
T Consensus       267 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~  324 (451)
T TIGR01173       267 DVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGP  324 (451)
T ss_pred             CCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECC
Confidence            45566666666666666666666666553 44454444444444444333333333333

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon)

Probab=99.29  E-value=3.7e-11  Score=84.75  Aligned_cols=75  Identities=16%  Similarity=0.305  Sum_probs=52.7

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA  260 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~  260 (302)
                      +.+.+++.+. ++.|++++.|+++|.|. +++|++++.|++++.|.+|++++++.|++++++.+|++++++.|++++
T Consensus         6 ~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~   80 (81)
T cd04652           6 TQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT   80 (81)
T ss_pred             CEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence            4455666664 46677777777777774 477777777777777777777777777777777777777777776653

eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.

>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase

Probab=99.28  E-value=5.8e-11  Score=87.86  Aligned_cols=79  Identities=22%  Similarity=0.251  Sum_probs=70.5

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE  263 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~  263 (302)
                      +.+.+++.|. +++|++++.|+ ++.|. +++|+++|.|++++.|.+|+|++++.|++++.+.++++++++.|++++++.
T Consensus         2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~   78 (104)
T cd04651           2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG   78 (104)
T ss_pred             ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEEC
Confidence            4567788884 67899999998 88884 899999999999999999999999999999999999999999999998886


Q ss_pred             cC
Q 022113          264 NM  265 (302)
Q Consensus       264 ~~  265 (302)
                      +.
T Consensus        79 ~~   80 (104)
T cd04651          79 GD   80 (104)
T ss_pred             CC
Confidence            54

It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.28  E-value=4.3e-11  Score=101.98  Aligned_cols=97  Identities=20%  Similarity=0.256  Sum_probs=78.8

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCc-EECCCCEECCCcEEe-ceEEccCCEECCCcEEec---------cEECC
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW  252 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~  252 (302)
                      .++.+.+.|+-.+++++++.|+++++|..++ +||+. .|  ++.|. +|+|+++|.|++++.|..         +.||+
T Consensus       154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe  230 (319)
T TIGR03535       154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE  230 (319)
T ss_pred             cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence            4566677777778888888888888887777 67775 66  36666 688899999998888533         78999


Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  285 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v  285 (302)
                      +|+||.++.|  +..||++|+|++|++|-.++.
T Consensus       231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~  261 (319)
T TIGR03535       231 RCLLGANSGL--GISLGDDCVVEAGLYVTAGTK  261 (319)
T ss_pred             CcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence            9999999999  789999999999999998885

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]

Probab=99.28  E-value=3.1e-11  Score=95.35  Aligned_cols=54  Identities=20%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             ceEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          230 RCTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       230 ~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      +..|+.++.|.++|+|+     .++||+++.||.++.| ++|.|+++|.||.++++.+++
T Consensus        50 ~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga  108 (176)
T COG0663          50 PIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGA  108 (176)
T ss_pred             ceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCc
Confidence            45567777777766663     2566666666666655 445555555555444443333

>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.2e-11  Score=107.57  Aligned_cols=84  Identities=17%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             CEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          208 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       208 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      +.++..++|+++|.|++++.|.+|+||++|.||+.+.|.+|++.+|+.||+++.| .+|+||.+++||+++.+.+..+=|
T Consensus       329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~nC~Ig~  407 (433)
T KOG1462|consen  329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLKNCIIGP  407 (433)
T ss_pred             eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeeeeeEecC
Confidence            5677788999999999999999999999999999999999999999999999999 789999999999998876544444


Q ss_pred             Ccccc
Q 022113          288 HKEIK  292 (302)
Q Consensus       288 ~~~~~  292 (302)
                      +.+++
T Consensus       408 ~yvVe  412 (433)
T KOG1462|consen  408 GYVVE  412 (433)
T ss_pred             CcEEc
Confidence            44433

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.25  E-value=4.9e-11  Score=111.52  Aligned_cols=43  Identities=16%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             CCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCC
Q 022113          217 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW  259 (302)
Q Consensus       217 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~  259 (302)
                      |++|.|++++.+.++++++++.++++++++++++++++.|+++
T Consensus       343 g~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~  385 (456)
T PRK14356        343 EEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAG  385 (456)
T ss_pred             CCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCC
Confidence            3333333333333444444444444444444555555555544

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=99.25  E-value=3e-10  Score=93.57  Aligned_cols=88  Identities=17%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             ceEEcCCcEECCCCEE----CCCcEECCCCEECCCcEEe---ceEEccCCEECCCcEEec--------------------
Q 022113          195 NVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS--------------------  247 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~--------------------  247 (302)
                      +..+++++.++.+|.+    .+...||+++.|++++.|.   ++.||++|.|++++.|.+                    
T Consensus        43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~  122 (192)
T PRK09677         43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD  122 (192)
T ss_pred             eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence            4446666666666665    3356777777777777775   567777777777777642                    


Q ss_pred             --------cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          248 --------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       248 --------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                              ++|+++++|++++.|.++++||++|.|++++++..
T Consensus       123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~  165 (192)
T PRK09677        123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK  165 (192)
T ss_pred             hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence                    46788888888888888888888888888887653

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=99.25  E-value=9.4e-11  Score=100.43  Aligned_cols=97  Identities=16%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             eEecceEEcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECC---CcEEeccEECCCCEECCCcEEccC
Q 022113          191 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENM  265 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~  265 (302)
                      ...-++.|++++.||+++.|..  +++||.+|.||++|.|     ++++++|.   .+...+.+||++|+||++++|.++
T Consensus       137 ~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg  211 (273)
T PRK11132        137 SVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN  211 (273)
T ss_pred             eeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC
Confidence            3334555556666666666653  3455555666555554     44444442   122335788999999999999888


Q ss_pred             cEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113          266 TILGEDVHVCDEIYSNG----GVV---LPHKEIK  292 (302)
Q Consensus       266 ~~i~~~~~v~~~~~v~~----~~v---~~~~~~~  292 (302)
                      +.||++++||++++|..    +++   +|++.+.
T Consensus       212 v~IG~~a~IGAgSvV~~dVp~~~~v~G~PArvi~  245 (273)
T PRK11132        212 IEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVG  245 (273)
T ss_pred             CEECCCCEECCCCEECcccCCCcEEEecCcEEeC
Confidence            99999999999888553    333   4665544

>PLN02694 serine O-acetyltransferase

Probab=99.24  E-value=4.7e-11  Score=102.30  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEec-eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      +-|+++++||+++.|..  +++||++|.||++|.|.+ ++++. +  +..+..++++|+++|.||++++|..+++||+++
T Consensus       161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a  237 (294)
T PLN02694        161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGA  237 (294)
T ss_pred             EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCCC
Confidence            34555555666655543  566666666666666542 22322 1  234455677888888888888888888888888


Q ss_pred             EECCceEEcC----CeE---ecCccccc
Q 022113          273 HVCDEIYSNG----GVV---LPHKEIKS  293 (302)
Q Consensus       273 ~v~~~~~v~~----~~v---~~~~~~~~  293 (302)
                      +|+++++|..    +++   +|.+.+..
T Consensus       238 ~IGAgSVV~kdVP~~~~v~G~PAkiv~~  265 (294)
T PLN02694        238 KIGAGSVVLIDVPPRTTAVGNPARLVGG  265 (294)
T ss_pred             EECCCCEECCcCCCCcEEEccCcEEEcc
Confidence            8888887653    333   46665553

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.24  E-value=1.2e-10  Score=109.65  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=14.8

Q ss_pred             EEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          232 TVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       232 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      +|++++.|++.+.+++++||++|.||+++.+
T Consensus       359 ~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i  389 (482)
T PRK14352        359 TIGRGTKVPHLTYVGDADIGEHSNIGASSVF  389 (482)
T ss_pred             EECCCcEEccCceecccEECCCcEECCCcEE
Confidence            3444444444444444555555555555433

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.23  E-value=6.2e-11  Score=111.32  Aligned_cols=63  Identities=19%  Similarity=0.315  Sum_probs=35.7

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      ....+.+++.|++++.|++++.|+++|.| .+++|+++|.|++++.|.+++|++++.|++++.+
T Consensus       275 ~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i  337 (481)
T PRK14358        275 RDVTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARL  337 (481)
T ss_pred             CCCEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEE
Confidence            34567777777777777777777666665 3455555555555555444444444444444444

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.23  E-value=1.4e-10  Score=95.65  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC----eE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG----VV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~----~v---~~~~~~~  292 (302)
                      ..+||++|+||+++.|.+++.||+++.|++++++..+    ++   .|++.++
T Consensus       131 pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~  183 (203)
T PRK09527        131 PITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIR  183 (203)
T ss_pred             CeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEec
Confidence            3688999999999999999999999999999887643    33   4665544

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.22  E-value=1.5e-10  Score=94.20  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=27.9

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      ...||++|+||+++.|.+++.||+++.|++++++..
T Consensus       129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             CeEECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence            467888888888888888888888888888877543

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.22  E-value=1.2e-10  Score=108.21  Aligned_cols=65  Identities=15%  Similarity=0.135  Sum_probs=46.3

Q ss_pred             ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCCCE
Q 022113          190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHST  255 (302)
Q Consensus       190 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~  255 (302)
                      ..+.+++.+.+.+.||++|.|++++.|+ +|.|+++|.|     .+|+|++++.|+++++|.+|.||+++.
T Consensus       254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~  323 (430)
T PRK14359        254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE  323 (430)
T ss_pred             eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE
Confidence            3456677777777788888888887665 5556666555     467788888888888887777776663

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=99.21  E-value=1.4e-10  Score=85.38  Aligned_cols=82  Identities=20%  Similarity=0.359  Sum_probs=56.0

Q ss_pred             EEcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECCCcE---EeccEECCCCEECCCcEEccCcEECCC
Q 022113          197 LVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGED  271 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~i~~~  271 (302)
                      .|+++++|++++.|..  .++|++++.|++++.     |++++.|++++.   ++.++|++++.|+.++.+.+++.|+++
T Consensus         4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~   78 (101)
T cd03354           4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDN   78 (101)
T ss_pred             EeCCCCEECCCEEECCCCeEEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCC
Confidence            3455555555555544  345566666666554     356666666664   677888888888888888888888888


Q ss_pred             cEECCceEEcCC
Q 022113          272 VHVCDEIYSNGG  283 (302)
Q Consensus       272 ~~v~~~~~v~~~  283 (302)
                      +.+++++.+.++
T Consensus        79 ~~i~~~~~i~~~   90 (101)
T cd03354          79 VKIGANAVVTKD   90 (101)
T ss_pred             CEECCCCEECcc
Confidence            888888887653

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.21  E-value=1.4e-10  Score=92.80  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      ..++|+++|+|+++++|..+++||+++.|++++++..+
T Consensus       112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d  149 (162)
T TIGR01172       112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD  149 (162)
T ss_pred             cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC
Confidence            44688888888888888888888888888888887654

Cysteine biosynthesis

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=99.21  E-value=3e-11  Score=90.57  Aligned_cols=93  Identities=20%  Similarity=0.344  Sum_probs=64.6

Q ss_pred             ceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEeccEECCCCEECC
Q 022113          195 NVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISSSIIGWHSTVGQ  258 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~i~~  258 (302)
                      +.++...+.|.++|.|.+   ++.+|.+|+++++++|+             +.+||+++-|+++|++..+.|+..+.+|.
T Consensus        33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk  112 (184)
T KOG3121|consen   33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK  112 (184)
T ss_pred             eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence            455556666777777765   77899999999998885             45788888888888887777777777776


Q ss_pred             CcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          259 WARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       259 ~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      ++.|+++|++.+-|+|.+++++++.+++|
T Consensus       113 naviGrrCVlkdCc~ild~tVlPpet~vp  141 (184)
T KOG3121|consen  113 NAVIGRRCVLKDCCRILDDTVLPPETLVP  141 (184)
T ss_pred             ceeEcCceEhhhheeccCCcccCcccccC
Confidence            66665555555555555555555444443

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=99.21  E-value=1.7e-10  Score=86.12  Aligned_cols=86  Identities=15%  Similarity=0.244  Sum_probs=61.5

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEece---EEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113          196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      +.|++++.|++++.|.+  ++.||++|.|++++.|.++   .+..++.+.+.....+++|++++.|++++.+.+++.|++
T Consensus         2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~   81 (109)
T cd04647           2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD   81 (109)
T ss_pred             eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence            45677777777777766  7888888888888888743   344444444445556777888888888888877778888


Q ss_pred             CcEECCceEEc
Q 022113          271 DVHVCDEIYSN  281 (302)
Q Consensus       271 ~~~v~~~~~v~  281 (302)
                      ++.+++++.+.
T Consensus        82 ~~~i~~~~~v~   92 (109)
T cd04647          82 GAVVGAGSVVT   92 (109)
T ss_pred             CCEECCCCEEe
Confidence            87777777766

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.21  E-value=1.1e-10  Score=108.84  Aligned_cols=12  Identities=8%  Similarity=0.052  Sum_probs=6.3

Q ss_pred             ChHHHHHcHhhh
Q 022113           27 TAGPLALARDKL   38 (302)
Q Consensus        27 t~~al~~a~~~i   38 (302)
                      +...+....+..
T Consensus       103 ~~~~i~~l~~~~  114 (448)
T PRK14357        103 SENTLKRLIEEH  114 (448)
T ss_pred             CHHHHHHHHHHH
Confidence            344555555544

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=99.20  E-value=1.5e-10  Score=108.30  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             CCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCC
Q 022113          205 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW  259 (302)
Q Consensus       205 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~  259 (302)
                      +++|.|.+++.||++|.|++++.|.++.|++++.+++.+.+++++|++++.|+++
T Consensus       326 g~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~  380 (458)
T PRK14354        326 GPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCG  380 (458)
T ss_pred             CCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCc
Confidence            3333333334444444444444444444444444444444444555555544443

>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH

Probab=99.19  E-value=2.3e-10  Score=88.01  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=40.6

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEEC----CCcEECCCCEECCCcEEeceEEccC----CEECCCcEE
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIG----PDVAVGPGCVVESGVRLSRCTVMRG----VRIKKHACI  245 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~i~~~----~~i~~~~~i  245 (302)
                      .+.+.+++.|-+.+.+..++.||++|.|.    .+++||.+|.|++++.|. +.+..+    +.||++|.|
T Consensus        13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~I   82 (147)
T cd04649          13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLL   82 (147)
T ss_pred             CCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEE
Confidence            35566666666677777777777777776    677777777777777776 444444    455555444

THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.18  E-value=2.3e-10  Score=104.47  Aligned_cols=89  Identities=21%  Similarity=0.353  Sum_probs=73.5

Q ss_pred             eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113          191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      .+.+...+.+.+.|++++.| .++.||++|.|+.  .+.+|+|+++|.|+++|+|.+|+|++++.|++++.| .+++|++
T Consensus       272 ~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i-~~~ii~~  347 (380)
T PRK05293        272 RIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI-ERAIIGE  347 (380)
T ss_pred             ceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEE-eEEEECC
Confidence            34344445556777777777 4778888888863  567999999999999999999999999999999999 6699999


Q ss_pred             CcEECCceEEcCC
Q 022113          271 DVHVCDEIYSNGG  283 (302)
Q Consensus       271 ~~~v~~~~~v~~~  283 (302)
                      +++|++++.+.++
T Consensus       348 ~~~i~~~~~i~~~  360 (380)
T PRK05293        348 NAVIGDGVIIGGG  360 (380)
T ss_pred             CCEECCCCEEcCC
Confidence            9999999988776

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=99.17  E-value=1.8e-10  Score=96.75  Aligned_cols=109  Identities=22%  Similarity=0.454  Sum_probs=86.2

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCC---------
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP---------   83 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~---------   83 (302)
                      +..+.+..+.+.+|||++++.+++.+.    ++|++++||.+++.++.++++.|++.++.+|+++++...+         
T Consensus        75 ~~~~~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~  150 (214)
T cd04198          75 KLDEVTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGK  150 (214)
T ss_pred             ceeEEEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCccc
Confidence            345666667889999999999999873    6899999999999999999999999999999988875421         


Q ss_pred             ----CCcceEEEeCCCCcEEEEEec-----------------CCC-CCCCeEEEEEEEeCHhhH
Q 022113           84 ----SKYGVVVMEESTGKVEKFVEK-----------------PKL-FVGNKINAGIYLLNPAVL  125 (302)
Q Consensus        84 ----~~~g~v~~d~~~~~v~~~~ek-----------------p~~-~~~~~~~~Giy~~~~~~l  125 (302)
                          ..+.++.+|+.+.+++.+...                 |.. ..+++.++++|+|+++++
T Consensus       151 ~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~  214 (214)
T cd04198         151 SKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL  214 (214)
T ss_pred             ccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence                236788888877888877652                 111 136788999999998764

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.16  E-value=4.4e-10  Score=96.44  Aligned_cols=153  Identities=23%  Similarity=0.304  Sum_probs=108.5

Q ss_pred             EEecCCCCCChHHHHHcHhhhccCC-CCcEEEEeCCeec-CcC-HHHHHHH---HHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           18 CSQETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVIS-EYP-FAEMIEF---HKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        18 ~~~~~~~~Gt~~al~~a~~~i~~~~-~~~~lv~~gD~l~-~~~-l~~~~~~---~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      ++.|+....||.||..|.-.+.... +.-++|+.+|++. +.+ |.+.++.   ..+++..+|+...|..+.++||++..
T Consensus        80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~  159 (333)
T COG0836          80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET  159 (333)
T ss_pred             eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence            8999999999999998877664322 2346888999966 333 6554443   34466888999999888899999988


Q ss_pred             eCC-----CCcEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCCCCC-------------------cccc
Q 022113           92 EES-----TGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELRPTS-------------------IEKE  138 (302)
Q Consensus        92 d~~-----~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~~~~-------------------~~~~  138 (302)
                      .+.     ..+|.+|.|||+..        ...+||+|+|+|+...+ +.+..-.++                   +..+
T Consensus       160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e  239 (333)
T COG0836         160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE  239 (333)
T ss_pred             CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence            542     24789999999753        24699999999998654 554321111                   0011


Q ss_pred             c----------hHHHHhcCcEEEEEecCeeEecCChHHHHHH
Q 022113          139 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITG  170 (302)
Q Consensus       139 ~----------~~~l~~~~~v~~~~~~g~~~digt~~~~~~a  170 (302)
                      -          |-.+.+..++.+.+.+-.|.|+|++.++++.
T Consensus       240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~  281 (333)
T COG0836         240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEV  281 (333)
T ss_pred             HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHH
Confidence            1          2234556788888888889999999887665

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.16  E-value=2.6e-10  Score=79.51  Aligned_cols=76  Identities=17%  Similarity=0.234  Sum_probs=43.7

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      .+++++.|++++.|.++++||++|.|++++.|.+.....        ......++++++++.++.+.+++.|++++.|++
T Consensus         2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~   73 (78)
T cd00208           2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA   73 (78)
T ss_pred             EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence            355555555556665556666666666666555432221        223356666666666666666666666666666


Q ss_pred             ceEE
Q 022113          277 EIYS  280 (302)
Q Consensus       277 ~~~v  280 (302)
                      ++.+
T Consensus        74 ~s~v   77 (78)
T cd00208          74 GAVV   77 (78)
T ss_pred             CcEe
Confidence            6554

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase

Probab=99.16  E-value=3e-10  Score=79.90  Aligned_cols=56  Identities=21%  Similarity=0.134  Sum_probs=29.2

Q ss_pred             EEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          232 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       232 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      +|+++|.|++++.|.++++++++.|++++.+ .++++++++.+++++.+..++++++
T Consensus        19 ~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i-~~sii~~~~~v~~~~~~~~~~~ig~   74 (80)
T cd05824          19 VIGPNVTIGDGVRLQRCVILSNSTVRDHSWV-KSSIVGWNSTVGRWTRLENVTVLGD   74 (80)
T ss_pred             EECCCCEECCCcEEeeeEEcCCCEECCCCEE-eCCEEeCCCEECCCcEEecCEEECC
Confidence            3444555555555555555555555555555 3355555555555555544444443

It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=99.16  E-value=4e-10  Score=91.00  Aligned_cols=36  Identities=11%  Similarity=0.045  Sum_probs=27.6

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      ++.||++|+||+++.|.+++.||+++.|++++++..
T Consensus       118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~  153 (169)
T cd03357         118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK  153 (169)
T ss_pred             CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            467788888888888777778888887777777654

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]

Probab=99.15  E-value=1.5e-10  Score=102.29  Aligned_cols=79  Identities=16%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             cccccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEE
Q 022113          180 KKSSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV  256 (302)
Q Consensus       180 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i  256 (302)
                      ..+++++.+++.+       .++.|++||+|.+   +|+|++++.|+++|+|.+|+||++|.||++|+|.+++|.++|.|
T Consensus       282 ~~pPak~~~~s~v-------~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I  354 (393)
T COG0448         282 NLPPAKFVNDSEV-------SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVI  354 (393)
T ss_pred             CCCCceEecCceE-------eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEe
Confidence            4455666666654       4445555555543   88999999999999999999999999999999999999999999


Q ss_pred             CCCcEEccC
Q 022113          257 GQWARVENM  265 (302)
Q Consensus       257 ~~~~~i~~~  265 (302)
                      +++++|+.+
T Consensus       355 ~~g~~i~~~  363 (393)
T COG0448         355 GEGVVIGGD  363 (393)
T ss_pred             CCCcEEcCC
Confidence            999998765

>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity

Probab=99.15  E-value=1.3e-10  Score=97.81  Aligned_cols=109  Identities=23%  Similarity=0.308  Sum_probs=81.0

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHH--HHHcCCcEEEEEEeC--CC------
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMVTKV--DE------   82 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~--~~~~~~~~~l~~~~~--~~------   82 (302)
                      ++.+.+..+.+.+|||++++.+++++.    ++|++++||++++.++.++++.  +...++++++++...  ++      
T Consensus        77 ~v~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  152 (216)
T cd02507          77 IVDVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSK  152 (216)
T ss_pred             eEEEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccc
Confidence            345667777789999999999999883    6899999999999999999964  333344555444443  22      


Q ss_pred             -CCCcceEEEeCCC--CcEEEEEecCCCC------------------CCCeEEEEEEEeCHhhH
Q 022113           83 -PSKYGVVVMEEST--GKVEKFVEKPKLF------------------VGNKINAGIYLLNPAVL  125 (302)
Q Consensus        83 -~~~~g~v~~d~~~--~~v~~~~ekp~~~------------------~~~~~~~Giy~~~~~~l  125 (302)
                       +..++++.+|+.+  .+++.+.|+|...                  .+++.++|+|+|+++++
T Consensus       153 ~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl  216 (216)
T cd02507         153 KTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL  216 (216)
T ss_pred             cCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence             3457999999855  5777777766431                  35788999999998764

N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>TIGR01172 cysE serine O-acetyltransferase

Probab=99.12  E-value=7.1e-10  Score=88.76  Aligned_cols=73  Identities=25%  Similarity=0.317  Sum_probs=34.6

Q ss_pred             ceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEec---------eEEccCCEECCCcEEe-ccEECCCCEEC
Q 022113          190 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACIS-SSIIGWHSTVG  257 (302)
Q Consensus       190 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i~  257 (302)
                      +.|++.+.|++++.|++  +++|++++.||++|.|++++.|..         ++|+++|.|+.++.|. +++||+++.|+
T Consensus        62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Ig  141 (162)
T TIGR01172        62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIG  141 (162)
T ss_pred             eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEEC
Confidence            44444444444444432  244444455555555555554442         3555555555555552 24445554444


Q ss_pred             CCcEE
Q 022113          258 QWARV  262 (302)
Q Consensus       258 ~~~~i  262 (302)
                      +++.+
T Consensus       142 a~s~V  146 (162)
T TIGR01172       142 ANSVV  146 (162)
T ss_pred             CCCEE
Confidence            44444

Cysteine biosynthesis

>PLN02357 serine acetyltransferase

Probab=99.11  E-value=5.6e-10  Score=98.35  Aligned_cols=84  Identities=23%  Similarity=0.254  Sum_probs=46.7

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      +-|+++++||.|+.|..  +++||++|+||++|.|. +++|+..   +.....++++||++|+||+++.|..+++||+++
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga  303 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA  303 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence            33445555555555543  34555555555555443 2222221   111113456777777777777777777777777


Q ss_pred             EECCceEEcC
Q 022113          273 HVCDEIYSNG  282 (302)
Q Consensus       273 ~v~~~~~v~~  282 (302)
                      +||++++|..
T Consensus       304 ~IGAgSVV~~  313 (360)
T PLN02357        304 KIGAGSVVLK  313 (360)
T ss_pred             EECCCCEECc
Confidence            7777777543

>PRK10191 putative acyl transferase; Provisional

Probab=99.10  E-value=7.4e-10  Score=86.55  Aligned_cols=36  Identities=17%  Similarity=0.104  Sum_probs=25.6

Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      +.||++++|++++.+.+++.||+++.+++++++..+
T Consensus        93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d  128 (146)
T PRK10191         93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS  128 (146)
T ss_pred             CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence            467777777777777777777777777777766543

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=99.09  E-value=2.1e-10  Score=101.63  Aligned_cols=106  Identities=19%  Similarity=0.350  Sum_probs=76.0

Q ss_pred             cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEec-cEECCCCEECCCcEEccCc
Q 022113          188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMT  266 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~  266 (302)
                      +++.+.+.+.|+.++.||++|+| .+|.|++++.|...++|.+|.|+++|.||+.++++. +.++++++||.++.+ .++
T Consensus       279 p~v~l~G~t~ig~~v~iGpg~~i-~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv-K~a  356 (460)
T COG1207         279 PNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV-KKA  356 (460)
T ss_pred             cCcEEeeeEEECCceEECCCcEE-EeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE-ecc
Confidence            33333334444444444444444 247777778887777888888888888888888864 888888999988888 778


Q ss_pred             EECCCcEECCceE-----EcCCeEecCccccccc
Q 022113          267 ILGEDVHVCDEIY-----SNGGVVLPHKEIKSSI  295 (302)
Q Consensus       267 ~i~~~~~v~~~~~-----v~~~~v~~~~~~~~~~  295 (302)
                      .||++++++.=++     |+.++-+++.+|.|+|
T Consensus       357 ~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNY  390 (460)
T COG1207         357 TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNY  390 (460)
T ss_pred             cccCCccccceeeeccceecCCceeccceEEEcC
Confidence            8888888888555     4455558888888885

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=99.07  E-value=1.1e-09  Score=99.05  Aligned_cols=94  Identities=15%  Similarity=0.164  Sum_probs=82.9

Q ss_pred             EecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCc-EECC
Q 022113          192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT-ILGE  270 (302)
Q Consensus       192 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~-~i~~  270 (302)
                      +.+.+.+.+.+.|+++|.| ++++|++.|.||++|.|.+++|+++|.|+++|+|++|.| .++.|+++++|+.+. .+ .
T Consensus       245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i-~~s~i~~~~~i~~~~~~~-~  321 (353)
T TIGR01208       245 VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV-EHSIVLDESVIEGVQARI-V  321 (353)
T ss_pred             cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE-EeeEEcCCCEEcCCccee-e
Confidence            5567888899999999999 899999999999999999999999999999999999888 489999999997764 55 5


Q ss_pred             CcEECCceEEcCCeEecC
Q 022113          271 DVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       271 ~~~v~~~~~v~~~~v~~~  288 (302)
                      ++.++.++.+++++.++.
T Consensus       322 ~~ii~~~~~i~~~~~~~~  339 (353)
T TIGR01208       322 DSVIGKKVRIKGNRRRPG  339 (353)
T ss_pred             cCEEcCCCEECCCccccc
Confidence            788999999988887764

Alternate name: dTDP-D-glucose synthase

>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=99.05  E-value=9.5e-10  Score=101.29  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             ECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          210 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       210 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      +.++++||++|.|+ ++.|.+|+|+++|.|+++|+|.+|+|+++|.|+++++| .+++|+++++|+++++++.
T Consensus       312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~  382 (407)
T PRK00844        312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVV-RRAILDKNVVVPPGATIGV  382 (407)
T ss_pred             eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCCEECC
Confidence            34679999999998 89999999999999999999999999999999999999 6699999999999998876

>PLN02739 serine acetyltransferase

Probab=99.03  E-value=1.1e-09  Score=95.88  Aligned_cols=46  Identities=17%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~  292 (302)
                      +.+||++|+||++++|..++.||+++.||+|++|.    ++++   +|++.++
T Consensus       257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~  309 (355)
T PLN02739        257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIG  309 (355)
T ss_pred             CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCCEEec
Confidence            35677777777777777777777777777777644    3333   4565554

>PLN02694 serine O-acetyltransferase

Probab=99.03  E-value=1.9e-09  Score=92.53  Aligned_cols=87  Identities=21%  Similarity=0.197  Sum_probs=53.9

Q ss_pred             ccccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCC---cEEeceEEccCCEECCCcEE-eccEECCCCEECC
Q 022113          185 KLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESG---VRLSRCTVMRGVRIKKHACI-SSSIIGWHSTVGQ  258 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~---~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~  258 (302)
                      .+++++.|+++++|+.  ++.||++|.|+.+|.|..++.+|..   +...+++|+++|.||.++.| ++++||+++.|++
T Consensus       162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA  241 (294)
T PLN02694        162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA  241 (294)
T ss_pred             EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence            3455555555555543  4444555555555555555554431   12235789999999999988 6788888888888


Q ss_pred             CcEEccCcEECCCcE
Q 022113          259 WARVENMTILGEDVH  273 (302)
Q Consensus       259 ~~~i~~~~~i~~~~~  273 (302)
                      ++.+..+  |.++++
T Consensus       242 gSVV~kd--VP~~~~  254 (294)
T PLN02694        242 GSVVLID--VPPRTT  254 (294)
T ss_pred             CCEECCc--CCCCcE
Confidence            8888652  444443

>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=99.03  E-value=3.4e-09  Score=90.55  Aligned_cols=96  Identities=17%  Similarity=0.181  Sum_probs=54.0

Q ss_pred             ccCceEecceEEcCCcEECCCCEECCCcEECCCC-EECCCcEEeceEEccCCEECCCcEEec-cEECC----C----CEE
Q 022113          187 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----STV  256 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~i  256 (302)
                      +.+++|.+...+--++.||+|++|.+.++|..++ .||+. .| ++.|.++|.||+++.|+. +.|+.    +    +.|
T Consensus       151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~I  228 (319)
T TIGR03535       151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISI  228 (319)
T ss_pred             CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEE
Confidence            4455555555555555666666666666666666 46653 33 455666666666666643 33333    3    556


Q ss_pred             CCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          257 GQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       257 ~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      |++|.|+.++.|  +..||++++|++|++|
T Consensus       229 Ge~~~IGagA~I--GI~IGd~~VVGAGaVV  256 (319)
T TIGR03535       229 GERCLLGANSGL--GISLGDDCVVEAGLYV  256 (319)
T ss_pred             CCCcEECCCCEE--CeEECCCCEECCCCEE
Confidence            666666655555  5556666666665544

Alternate name: tetrahydrodipicolinate N-succinyltransferase.

>TIGR02091 glgC glucose-1-phosphate adenylyltransferase

Probab=99.02  E-value=1.7e-09  Score=98.19  Aligned_cols=50  Identities=22%  Similarity=0.325  Sum_probs=25.1

Q ss_pred             CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      +++|+++|.|+++|+|.+|+|++++.|++++.|.+|++++++.|++++.|
T Consensus       310 ~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i  359 (361)
T TIGR02091       310 HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVI  359 (361)
T ss_pred             ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEe
Confidence            44555555555555555555555555555555554555444444444443

This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.

>PRK10092 maltose O-acetyltransferase; Provisional

Probab=99.02  E-value=7.5e-09  Score=84.30  Aligned_cols=93  Identities=15%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe-------------ccEECCCCE
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------SSIIGWHST  255 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-------------~~~i~~~~~  255 (302)
                      ++.|.+++.+    .+|.++.|+++++|+.+|+|++.+.|   .||++|.|++++.+.             ...++..+.
T Consensus        59 ~~~i~~~~~~----~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~  131 (183)
T PRK10092         59 EAYIEPTFRC----DYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVT  131 (183)
T ss_pred             CEEEeCCEEE----eecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeE
Confidence            4455554432    23444444444444444444444433   455555555555553             123455667


Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ||++++|+.+++|.++++||++++|++++++..
T Consensus       132 IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~  164 (183)
T PRK10092        132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK  164 (183)
T ss_pred             ECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence            777777777777777777777777777776543

>PRK10191 putative acyl transferase; Provisional

Probab=99.02  E-value=3.8e-09  Score=82.52  Aligned_cols=78  Identities=21%  Similarity=0.263  Sum_probs=34.7

Q ss_pred             ccccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCCcEEe--ceEEccCCEECCCcEEe-ccEECCCCEECCC
Q 022113          185 KLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACIS-SSIIGWHSTVGQW  259 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~  259 (302)
                      .+++++.+++++.+++  ++.|++++.||++++|+.+|.||+.....  .+.|+++|.|+.++.+. ++.|++++.|+++
T Consensus        43 ~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igag  122 (146)
T PRK10191         43 EIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAG  122 (146)
T ss_pred             ccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCC
Confidence            3444455554444444  23444444444444444444444332211  23455555555555553 2444444444444


Q ss_pred             cEE
Q 022113          260 ARV  262 (302)
Q Consensus       260 ~~i  262 (302)
                      +.+
T Consensus       123 s~V  125 (146)
T PRK10191        123 SVV  125 (146)
T ss_pred             CEE
Confidence            444

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=99.01  E-value=5.8e-09  Score=77.60  Aligned_cols=85  Identities=21%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             eEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEeceEEccCCEECCCc-EEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          196 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA-CISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      ..+|+++.|++++.|.  +.+.||++|.|++++.|....  +........ ..+...|+++|+|+.++.|.+++.|++++
T Consensus         4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~--h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~   81 (107)
T cd05825           4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGS--HDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGA   81 (107)
T ss_pred             EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCC--CCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCC
Confidence            4456666666666663  356677777777776664210  111111111 22457788888888888888788888888


Q ss_pred             EECCceEEcC
Q 022113          273 HVCDEIYSNG  282 (302)
Q Consensus       273 ~v~~~~~v~~  282 (302)
                      .|++++.+..
T Consensus        82 ~i~~gs~v~~   91 (107)
T cd05825          82 VVGARSVVVR   91 (107)
T ss_pred             EECCCCEEeC
Confidence            8888777754

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X)

Probab=99.00  E-value=3.7e-09  Score=73.55  Aligned_cols=70  Identities=16%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             ECCCCEECCCcEEec-eEEccCCEECCCcEEeccEEC---CCCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113          216 VGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  285 (302)
Q Consensus       216 ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~---~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v  285 (302)
                      ||+++.|++++.|.. +.|+++|.|++++.+.+....   ..+.|+++++++.++.+.++++|++++.++++++
T Consensus         3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~   76 (78)
T cd00208           3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV   76 (78)
T ss_pred             ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence            333333333343332 455555555555555544322   3356666666666666666666666666655554

Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.

>PRK09527 lacA galactoside O-acetyltransferase; Reviewed

Probab=99.00  E-value=8.5e-09  Score=85.13  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             eEEccCCEECCCcEEec-------------cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          231 CTVMRGVRIKKHACISS-------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      ..||++|.|++++.|..             ......+.||++++|+.+++|.++++||++++|+++++|...
T Consensus        96 I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd  167 (203)
T PRK09527         96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD  167 (203)
T ss_pred             EEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc
Confidence            34555555555555531             223445778888888888888888888888888888776643

>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.99  E-value=2e-09  Score=99.70  Aligned_cols=91  Identities=10%  Similarity=0.205  Sum_probs=74.9

Q ss_pred             EecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC-------------------
Q 022113          192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW-------------------  252 (302)
Q Consensus       192 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------  252 (302)
                      +...+.+.+.+.+ .++.|. ++.||++|.| +++.|.+|+|+++|.|+++|.|.+|+|+.                   
T Consensus       289 i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~  365 (429)
T PRK02862        289 IYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP  365 (429)
T ss_pred             eeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCc
Confidence            3434455566666 367774 6899999999 88999999999999999999999999976                   


Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ++.||++|.| .+++|+++++||+++.+.++..+
T Consensus       366 ~~~Ig~~~~i-~~~ii~~~~~i~~~~~~~~~~~~  398 (429)
T PRK02862        366 PLGIGEGTTI-KRAIIDKNARIGNNVRIVNKDNV  398 (429)
T ss_pred             ccEECCCCEE-EEEEECCCcEECCCcEEecCCCc
Confidence            6999999999 66999999999999888654433

>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine

Probab=98.99  E-value=6.9e-09  Score=76.33  Aligned_cols=78  Identities=24%  Similarity=0.280  Sum_probs=49.4

Q ss_pred             cccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCCcE---EeceEEccCCEECCCcEEec-cEECCCCEECCC
Q 022113          186 LATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW  259 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~  259 (302)
                      +++++.|+++++++.  ++.|++++.|++++.|+.++.|+.++.   +..++|+++|.|+.++.+.. +.+++++.|+++
T Consensus         5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~   84 (101)
T cd03354           5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN   84 (101)
T ss_pred             eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCC
Confidence            455566666666654  445666666666666666666666664   44667777777777777744 556666666655


Q ss_pred             cEEc
Q 022113          260 ARVE  263 (302)
Q Consensus       260 ~~i~  263 (302)
                      +.|.
T Consensus        85 ~~i~   88 (101)
T cd03354          85 AVVT   88 (101)
T ss_pred             CEEC
Confidence            5553

This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.

>PRK11132 cysE serine acetyltransferase; Provisional

Probab=98.97  E-value=3.6e-09  Score=90.73  Aligned_cols=78  Identities=19%  Similarity=0.229  Sum_probs=50.0

Q ss_pred             ccCceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCC
Q 022113          187 ATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHS  254 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~  254 (302)
                      ..++.|++.+.||+++.|++  +++|+.++.||++|.|..+++|.         +..|+++|.||.+|.| +++.||+++
T Consensus       139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a  218 (273)
T PRK11132        139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA  218 (273)
T ss_pred             eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCC
Confidence            34555555555666555543  44666666666666666666665         3578888888888777 456777777


Q ss_pred             EECCCcEEcc
Q 022113          255 TVGQWARVEN  264 (302)
Q Consensus       255 ~i~~~~~i~~  264 (302)
                      .||+++.+..
T Consensus       219 ~IGAgSvV~~  228 (273)
T PRK11132        219 KIGAGSVVLQ  228 (273)
T ss_pred             EECCCCEECc
Confidence            7777776644

>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=98.96  E-value=4.3e-09  Score=97.37  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=63.6

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCc
Q 022113          194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT  266 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~  266 (302)
                      .+++|+++|.| ++|.|. +|+|+++|.|+++|.|.+|+|+++|.|+++|+|.+|+|++++.|++++.|+.++
T Consensus       326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~  396 (425)
T PRK00725        326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDP  396 (425)
T ss_pred             EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCC
Confidence            47889999999 788886 799999999999999999999999999999999999999999998887775443

>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates

Probab=98.96  E-value=1.5e-08  Score=81.87  Aligned_cols=40  Identities=18%  Similarity=0.147  Sum_probs=26.7

Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ..+..+.||++++|+.+++|.++++||++++|++++++..
T Consensus       114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~  153 (169)
T cd03357         114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK  153 (169)
T ss_pred             eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            3455667777777777777777777777777777666543

MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).

>PLN02739 serine acetyltransferase

Probab=98.95  E-value=4.4e-09  Score=92.04  Aligned_cols=74  Identities=19%  Similarity=0.239  Sum_probs=44.1

Q ss_pred             eEecceEEcCCcEEC--CCCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEECC
Q 022113          191 NIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTVGQ  258 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~  258 (302)
                      .|++.+.||+++.|+  .+++|+.+++||++|.|..+++|.         +..|+++|.||.++.| +++.||+++.||+
T Consensus       207 dI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGA  286 (355)
T PLN02739        207 DIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAA  286 (355)
T ss_pred             ccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECC
Confidence            344444444444443  244555555555555555555553         3678888888888777 5577777777777


Q ss_pred             CcEEcc
Q 022113          259 WARVEN  264 (302)
Q Consensus       259 ~~~i~~  264 (302)
                      ++.+..
T Consensus       287 GSVV~k  292 (355)
T PLN02739        287 GSLVLK  292 (355)
T ss_pred             CCEECC
Confidence            777654

>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit

Probab=98.93  E-value=5.3e-09  Score=95.20  Aligned_cols=49  Identities=16%  Similarity=0.273  Sum_probs=22.0

Q ss_pred             cEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          214 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      |+|+++|.|+++|.|.+|++++++.|++++.+.+|++++++.|++++++
T Consensus       305 s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~  353 (369)
T TIGR02092       305 SILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI  353 (369)
T ss_pred             CEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence            4444444444444444444444444444444444444444444444433

This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.

>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

Probab=98.91  E-value=1e-08  Score=88.11  Aligned_cols=31  Identities=3%  Similarity=0.069  Sum_probs=16.0

Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |.||.++.|  +..|+.+|+|+.++.|-+++.|
T Consensus       257 ~lIGagA~I--GI~IGd~~iIGAGavVtagTkI  287 (341)
T TIGR03536       257 CLLGANAGI--GIPLGDRCTVEAGLYITAGTKV  287 (341)
T ss_pred             cEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence            444445544  4555555555555555555443

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.

>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E

Probab=98.91  E-value=1.6e-08  Score=75.16  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             eEEccCCEECCCcEEec----------cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          231 CTVMRGVRIKKHACISS----------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      ..|+++|.|++++.|..          ..+...+.|+++++|+.++.|..+++|++++++++++++.
T Consensus        24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~   90 (107)
T cd05825          24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV   90 (107)
T ss_pred             eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence            34555555555555421          2344456666666666666666666666666666666554

coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.

>PLN02917 CMP-KDO synthetase

Probab=98.91  E-value=9.2e-08  Score=83.93  Aligned_cols=160  Identities=17%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEE----eCCCCCC
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVT----KVDEPSK   85 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~----~~~~~~~   85 (302)
                      .++++.+..+..+.||+++ ..+++.+..+ .+.+++++||. +. ...++++++.+.+. ++.+++..    ..+++..
T Consensus       107 ~~v~vi~~~~~~~~GT~~~-~~a~~~l~~~-~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~  183 (293)
T PLN02917        107 FGADVIMTSESCRNGTERC-NEALKKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASD  183 (293)
T ss_pred             cCCEEEeCCcccCCchHHH-HHHHHhccCC-CCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcC
Confidence            4665544445667899987 5788877532 36788899999 55 45599999988654 34443333    4467889


Q ss_pred             cceEE--EeCCCCcEEEEEec--C---C----CCCCCeEEEEEEEeCHhhHhhccCC-CCCccccchH----HHHhcCcE
Q 022113           86 YGVVV--MEESTGKVEKFVEK--P---K----LFVGNKINAGIYLLNPAVLDRIELR-PTSIEKEVFP----KIALEGKL  149 (302)
Q Consensus        86 ~g~v~--~d~~~~~v~~~~ek--p---~----~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~~~~~~----~l~~~~~v  149 (302)
                      ||.+.  .|+ +|+++.|...  |   +    .....+.++|+|.|+.+.|..+..- ....+.+++.    .+.+..++
T Consensus       184 ygrv~vv~~~-~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i  262 (293)
T PLN02917        184 PNRVKCVVDN-QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKM  262 (293)
T ss_pred             CCceEEEECC-CCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCce
Confidence            99885  564 6886655432  1   1    1123588999999999988766432 2234444433    22233467


Q ss_pred             EEEEecCeeEecCChHHHHHHHHHHH
Q 022113          150 FAMVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       150 ~~~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      ..+..+.....++||+++..+++.+.
T Consensus       263 ~~~~~~~~~~GVnt~~dL~~ae~~~~  288 (293)
T PLN02917        263 KVIKVDHEAHGVDTPEDVEKIEALMR  288 (293)
T ss_pred             EEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence            77776666779999999999988764

>PLN02357 serine acetyltransferase

Probab=98.90  E-value=1.2e-08  Score=90.14  Aligned_cols=75  Identities=23%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             ceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEEC
Q 022113          190 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTVG  257 (302)
Q Consensus       190 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~  257 (302)
                      ..|++.+.||+++.|..  +++|+++++||++|.|..+++|.         +++|+++|.||.++.| ++.+||+++.||
T Consensus       227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG  306 (360)
T PLN02357        227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG  306 (360)
T ss_pred             eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence            34445555555555543  44555555555555555555553         4789999999999877 678888888888


Q ss_pred             CCcEEcc
Q 022113          258 QWARVEN  264 (302)
Q Consensus       258 ~~~~i~~  264 (302)
                      +++.+.+
T Consensus       307 AgSVV~~  313 (360)
T PLN02357        307 AGSVVLK  313 (360)
T ss_pred             CCCEECc
Confidence            8888754

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.88  E-value=2.1e-08  Score=80.27  Aligned_cols=46  Identities=15%  Similarity=0.204  Sum_probs=34.6

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~  292 (302)
                      +=+|++++.||++++|..+-.||++++||++++|..    +++   +|.|.+.
T Consensus       119 hPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii~  171 (194)
T COG1045         119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG  171 (194)
T ss_pred             CCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecCcceEec
Confidence            346788888888888877788888888888888553    332   6787776

>PRK10502 putative acyl transferase; Provisional

Probab=98.88  E-value=1.4e-08  Score=82.88  Aligned_cols=98  Identities=16%  Similarity=0.232  Sum_probs=47.9

Q ss_pred             cccccCceEecc--------eEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEec-e---------EEccCCEECCCc
Q 022113          184 LKLATGANIVGN--------VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-C---------TVMRGVRIKKHA  243 (302)
Q Consensus       184 ~~~~~~~~i~~~--------~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-~---------~i~~~~~i~~~~  243 (302)
                      +.+.+++.|.++        ..|++++.|+++|.|.  ..++||++|.|++++.|.. +         .+...+.||++|
T Consensus        52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~  131 (182)
T PRK10502         52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC  131 (182)
T ss_pred             cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence            344555555443        4456666666666664  2456777777777776631 0         111223444444


Q ss_pred             EEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          244 CIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       244 ~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      .|+ ++++..++.||+++.|+.++++-+.  +.+++++...
T Consensus       132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~  170 (182)
T PRK10502        132 WLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGN  170 (182)
T ss_pred             EEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECC
Confidence            442 2344444444444444444444332  4455554443

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=9.9e-09  Score=92.63  Aligned_cols=71  Identities=25%  Similarity=0.376  Sum_probs=56.1

Q ss_pred             ECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          204 IGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       204 i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      +.. +.|.+.++||++|.|++++.|. +++|+++|.|++++.|.+|++.+++.|++++.| .+++|+++|+|++
T Consensus       253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i-~~sIi~~~~~ig~  324 (358)
T COG1208         253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI-GDSIIGENCKIGA  324 (358)
T ss_pred             ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEE-eeeEEcCCcEECC
Confidence            445 6666677777777777777776 477788888888888999999999999998888 6688888888885

>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]

Probab=98.88  E-value=3.1e-09  Score=79.83  Aligned_cols=94  Identities=16%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             cccccCceEec---ceEEcCCcEECCCCEECC------------CcEECCCCEECCCcEEeceEEccCCEECCCcEEec-
Q 022113          184 LKLATGANIVG---NVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-  247 (302)
Q Consensus       184 ~~~~~~~~i~~---~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-  247 (302)
                      ..+.+++.|++   ++.+|..|.++.+++|.|            +..||+++.|+++|++.-..|+..+++|.+++|++ 
T Consensus        40 tIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrr  119 (184)
T KOG3121|consen   40 TIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRR  119 (184)
T ss_pred             EEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCc
Confidence            44667788876   677888888888888876            45899999999999999999999999999998865 


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCc
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDE  277 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~  277 (302)
                      |++.+.|.|.+++.+.+.+.+.+.++++.+
T Consensus       120 CVlkdCc~ild~tVlPpet~vppy~~~~g~  149 (184)
T KOG3121|consen  120 CVLKDCCRILDDTVLPPETLVPPYSTIGGN  149 (184)
T ss_pred             eEhhhheeccCCcccCcccccCCceEEcCC
Confidence            777777777777777777777776666654

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.87  E-value=3.3e-08  Score=91.84  Aligned_cols=156  Identities=19%  Similarity=0.228  Sum_probs=107.1

Q ss_pred             EEEEecCCCCCChHHHHHcHhhhccC---CCCcEEEEeCCeec-CcC-HHHHHHHH---HHcCCcEEEEEEeCCCCCCcc
Q 022113           16 IICSQETEPLGTAGPLALARDKLIDD---TGEPFFVLNSDVIS-EYP-FAEMIEFH---KAHGGEASIMVTKVDEPSKYG   87 (302)
Q Consensus        16 i~~~~~~~~~Gt~~al~~a~~~i~~~---~~~~~lv~~gD~l~-~~~-l~~~~~~~---~~~~~~~~l~~~~~~~~~~~g   87 (302)
                      -.++.|+...+||.||..|.-++...   .++.++|+++|+++ +.+ |.+.++..   .+.+.-+|+.+.|..+.+.||
T Consensus        80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyG  159 (478)
T PRK15460         80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYG  159 (478)
T ss_pred             ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCC
Confidence            37899999999999998887766331   12467889999976 333 55443332   234667888888888889999


Q ss_pred             eEEEeCCC--------CcEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCC----------------CC-
Q 022113           88 VVVMEEST--------GKVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELR----------------PT-  133 (302)
Q Consensus        88 ~v~~d~~~--------~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~----------------~~-  133 (302)
                      ++..++.-        .+|.+|.|||+..        ...+||+|||+|+.+.+ +.+..-                .. 
T Consensus       160 YI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~  239 (478)
T PRK15460        160 YIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDL  239 (478)
T ss_pred             eEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcc
Confidence            99986421        2699999999753        24689999999997654 444210                00 


Q ss_pred             C---ccccchH----------HHHhcCcEEEEEecCeeEecCChHHHHHHH
Q 022113          134 S---IEKEVFP----------KIALEGKLFAMVLPGFWMDIGQPRDYITGL  171 (302)
Q Consensus       134 ~---~~~~~~~----------~l~~~~~v~~~~~~g~~~digt~~~~~~a~  171 (302)
                      .   +..+.|.          .+.+..++.+.+.+-.|.|+|++.++.+..
T Consensus       240 ~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~  290 (478)
T PRK15460        240 DFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS  290 (478)
T ss_pred             cceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence            0   0012222          233446788888888899999999987753

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.87  E-value=2.1e-08  Score=78.63  Aligned_cols=51  Identities=18%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             EEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccccc
Q 022113          244 CISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIKSS  294 (302)
Q Consensus       244 ~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~~~  294 (302)
                      ...+++|+++|+||+++.|.+++.||+++.|+++++|.    ++++   .|++.++..
T Consensus        70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~  127 (145)
T cd03349          70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYR  127 (145)
T ss_pred             ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhh
Confidence            34678899999999999998889999999999988854    4434   366666554

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins

Probab=98.86  E-value=1.8e-08  Score=74.97  Aligned_cols=16  Identities=19%  Similarity=0.148  Sum_probs=6.8

Q ss_pred             ceEEccCCEECCCcEE
Q 022113          230 RCTVMRGVRIKKHACI  245 (302)
Q Consensus       230 ~~~i~~~~~i~~~~~i  245 (302)
                      .++|+++|.|++++.+
T Consensus        58 ~~~Ig~~~~ig~~~~i   73 (109)
T cd04647          58 PIVIGDDVWIGANVVI   73 (109)
T ss_pred             CeEECCCCEECCCCEE
Confidence            3444444444444433

MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.

>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional

Probab=98.85  E-value=7.5e-08  Score=79.33  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             ceEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEeceEE--------ccCCEE--------CCCcEEec-cEECCCCE
Q 022113          195 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTV--------MRGVRI--------KKHACISS-SIIGWHST  255 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i--------~~~~~i--------~~~~~i~~-~~i~~~~~  255 (302)
                      .+.+|+++.|++++.|.  +++.||++|.|++++.|.+...        ..+..+        ...++|++ +.++.++.
T Consensus        65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~  144 (192)
T PRK09677         65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT  144 (192)
T ss_pred             eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence            44445555555555544  2456666666666665542100        000000        01233422 44555555


Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCCeE---ecCcccc
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGGVV---LPHKEIK  292 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v---~~~~~~~  292 (302)
                      |.++++|+++++|++++.|...  ++++++   .|++.++
T Consensus       145 i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik  182 (192)
T PRK09677        145 ILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIK  182 (192)
T ss_pred             EcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEe
Confidence            5555555555666666666553  444443   3555544

>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]

Probab=98.82  E-value=1.6e-08  Score=84.74  Aligned_cols=70  Identities=17%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             CcEECCCCEECCC------cEECCCCEECCCcEEe---------ceEEccCCEECCCc-EEeccEECCCCEECCCcEEcc
Q 022113          201 SAQIGEGCLIGPD------VAVGPGCVVESGVRLS---------RCTVMRGVRIKKHA-CISSSIIGWHSTVGQWARVEN  264 (302)
Q Consensus       201 ~~~i~~~~~i~~~------~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~  264 (302)
                      |+.++++|.|..+      ++||.+|-||.++.|.         ..+|++||-||+++ .+.+..+|++|.|++++.|..
T Consensus       138 gA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~  217 (271)
T COG2171         138 GAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ  217 (271)
T ss_pred             CcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeC
Confidence            4444555544443      3444444444444442         46788888888877 446677777777776666655


Q ss_pred             CcEECC
Q 022113          265 MTILGE  270 (302)
Q Consensus       265 ~~~i~~  270 (302)
                      ++.|..
T Consensus       218 ~tki~~  223 (271)
T COG2171         218 DTKIYD  223 (271)
T ss_pred             CcceEE
Confidence            544443

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=98.81  E-value=2.6e-08  Score=92.53  Aligned_cols=81  Identities=15%  Similarity=0.285  Sum_probs=67.7

Q ss_pred             CCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC----------------C---CEECCCc
Q 022113          200 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQWA  260 (302)
Q Consensus       200 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~  260 (302)
                      +++.+ .++.|.+ ++|+++|.|+ ++.|.+|+|+++|.|+++|+|.++++..                +   +.|++++
T Consensus       304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~  380 (436)
T PLN02241        304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT  380 (436)
T ss_pred             CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence            55666 4666755 9999999999 9999999999999999999999988855                3   3899999


Q ss_pred             EEccCcEECCCcEECCceEEcCCe
Q 022113          261 RVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       261 ~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      ++. +++|+++++||+++.+.+..
T Consensus       381 ~i~-~~vI~~~v~Ig~~~~i~~~~  403 (436)
T PLN02241        381 KIR-NAIIDKNARIGKNVVIINKD  403 (436)
T ss_pred             EEc-ceEecCCCEECCCcEEeccc
Confidence            994 68899999999998886443

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.72  E-value=1.2e-08  Score=77.33  Aligned_cols=106  Identities=13%  Similarity=0.096  Sum_probs=72.8

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEec--------------eEEccCCEECCCcEE
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACI  245 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i  245 (302)
                      .+.+.-.+.|++++.++++|.|.+.+++..   .-+||.++.|++.++|.+              .+||.+-...-+|+.
T Consensus        14 ~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s   93 (190)
T KOG4042|consen   14 SAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS   93 (190)
T ss_pred             ceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence            344444556677777777777777666543   448888888888887743              467777777667777


Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ....+|+.-.|+..+.+++++.+.++|.||+++.+.....+|.
T Consensus        94 ~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpe  136 (190)
T KOG4042|consen   94 SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPE  136 (190)
T ss_pred             hhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCC
Confidence            7777777777777777777777777777777766554444443

>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]

Probab=98.61  E-value=1.9e-07  Score=74.83  Aligned_cols=76  Identities=26%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             CceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEE
Q 022113          189 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTV  256 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i  256 (302)
                      +..|+|.+.||++..|.+  +.+|++-+.||++|.|-.+++|.         +=.|++++.||+++.| ++-.||+++.|
T Consensus        67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akI  146 (194)
T COG1045          67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKI  146 (194)
T ss_pred             ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEE
Confidence            344444444444444433  34566666666666666666664         2379999999999887 77889999999


Q ss_pred             CCCcEEcc
Q 022113          257 GQWARVEN  264 (302)
Q Consensus       257 ~~~~~i~~  264 (302)
                      |+++.+..
T Consensus       147 GA~sVVlk  154 (194)
T COG1045         147 GAGSVVLK  154 (194)
T ss_pred             CCCceEcc
Confidence            99998855

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.60  E-value=5.8e-07  Score=74.34  Aligned_cols=158  Identities=19%  Similarity=0.254  Sum_probs=92.8

Q ss_pred             hcCCcEEEEEec--CCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEeCC--CCC
Q 022113           10 AKLGIKIICSQE--TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKVD--EPS   84 (302)
Q Consensus        10 ~~~g~~i~~~~~--~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~~~--~~~   84 (302)
                      .+.+.+..++..  .+-.+|+.+|..|++.+.    +.|++++||+++..+ ++.+++    .....+++.....  +..
T Consensus        66 ~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~  137 (239)
T COG1213          66 KKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVE  137 (239)
T ss_pred             hcCCcceEEEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccC
Confidence            335555555555  456677999999999995    579999999999876 333333    2222222222110  111


Q ss_pred             CcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhcc-CCCCCccccchHHHHhcCcEEEEEec-----Cee
Q 022113           85 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGKLFAMVLP-----GFW  158 (302)
Q Consensus        85 ~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~~~~l~~~~~v~~~~~~-----g~~  158 (302)
                      .-..+..+  +|++..+..+-.  ..+-.++|++.|++++|..+. ...... .--+....+.-.+.....+     .+|
T Consensus       138 ea~kv~~e--~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~di~~~g~~w  212 (239)
T COG1213         138 EATKVKDE--GGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERS-EYDYREVEKEAGLPFTEVDIHVDGLFW  212 (239)
T ss_pred             ceeEEEec--CCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhh-hHHHHHHHHHhCCceEEeeccccCcee
Confidence            11233333  688888776644  235678999999999886442 111100 0112333333222222222     589


Q ss_pred             EecCChHHHHHHHHHHHHhhcc
Q 022113          159 MDIGQPRDYITGLRLYLDSLRK  180 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~  180 (302)
                      +++.+||++.++.+.+......
T Consensus       213 ~EVDtpeDl~~ar~~~~~~~~k  234 (239)
T COG1213         213 MEVDTPEDLERARKYLVPNIKK  234 (239)
T ss_pred             EecCCHHHHHHHHHHHHHHHHh
Confidence            9999999999998877655443

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.59  E-value=1.9e-07  Score=91.15  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=41.5

Q ss_pred             CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      ..+||++|.|+++|.+.+..+.     +....++..+||++|.||+++.|.+++.||++++|++++.+..+.
T Consensus       131 li~IG~~~~I~~~v~l~~~~~~-----~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~  197 (695)
T TIGR02353       131 LLTIGAGTIVRKEVMLLGYRAE-----RGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQ  197 (695)
T ss_pred             ceEECCCCEECCCCEEEcccCC-----CCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCc
Confidence            3446666666666665432222     112233456777777777777777777777777777777765543

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.58  E-value=2.7e-07  Score=75.94  Aligned_cols=98  Identities=18%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             ceEEcCCcEECCCCEE--CCCcEECCCCEECCCcEEec-eEEccCCEECC--CcEEeccEECCCCEECCCcEEccCcEEC
Q 022113          195 NVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKK--HACISSSIIGWHSTVGQWARVENMTILG  269 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~--~~~i~~~~i~~~~~i~~~~~i~~~~~i~  269 (302)
                      ...++.++.++.++.+  ..+.+||.++.+++++.|.. ++.++...-..  ....+.++||++||||+++.|.++++||
T Consensus        67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG  146 (190)
T COG0110          67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG  146 (190)
T ss_pred             ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence            4445555555555542  23445666666666666652 23232222222  2223469999999999999999999999


Q ss_pred             CCcEECCceEEcC----CeE---ecCcccc
Q 022113          270 EDVHVCDEIYSNG----GVV---LPHKEIK  292 (302)
Q Consensus       270 ~~~~v~~~~~v~~----~~v---~~~~~~~  292 (302)
                      +++.||+++++..    .++   .|++.++
T Consensus       147 ~gavigagsVVtkdvp~~~iv~G~Pa~vir  176 (190)
T COG0110         147 EGAVIGAGSVVTKDVPPYGIVAGNPARVIR  176 (190)
T ss_pred             CCcEEeeCCEEeCccCCCeEEeCCcceEEE
Confidence            9999999988653    333   4666553

>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function

Probab=98.57  E-value=1.5e-07  Score=91.81  Aligned_cols=90  Identities=20%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             eEEcCCcEECCCCEECCC-------cEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEE
Q 022113          196 VLVHESAQIGEGCLIGPD-------VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTIL  268 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~~-------~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i  268 (302)
                      .+...+++||++|.|.+.       +.||++|.|+++|.|... ..++..    -.+++++||++|.||++++|.+++.|
T Consensus       592 ~lr~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h-~~~~~~----~~~~~v~IG~~~~IG~~a~V~~g~~I  666 (695)
T TIGR02353       592 ILRLLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTH-LFEDRV----MKSDTVTIGDGATLGPGAIVLYGVVM  666 (695)
T ss_pred             HHHHCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEec-cccccc----cccCCeEECCCCEECCCCEECCCCEE
Confidence            333444444444444432       466666666666665431 111111    12456778888888888888888888


Q ss_pred             CCCcEECCceEEcCCeEecCcc
Q 022113          269 GEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       269 ~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      |+++.|++++++..+..+|+++
T Consensus       667 Gd~a~Ig~~SvV~~g~~vp~~s  688 (695)
T TIGR02353       667 GEGSVLGPDSLVMKGEEVPAHT  688 (695)
T ss_pred             CCCCEECCCCEEcCCcccCCCC
Confidence            8888888887777666566544

This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.

>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.54  E-value=1.4e-07  Score=71.64  Aligned_cols=101  Identities=23%  Similarity=0.280  Sum_probs=76.6

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEec--------------cEECCC---
Q 022113          195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS--------------SIIGWH---  253 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~---  253 (302)
                      .+.|.|++.|..-+-|.++++|+++|++.+.+++.    .-+||+|+.|.++++|.+              -+||.+   
T Consensus         8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF   87 (190)
T KOG4042|consen    8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF   87 (190)
T ss_pred             eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence            35566777777777888888999999999988875    678999999999888843              344444   


Q ss_pred             --------CEECCCcEEccCcEECCCcEECCceEEcCCeE-ecCccccccc
Q 022113          254 --------STVGQWARVENMTILGEDVHVCDEIYSNGGVV-LPHKEIKSSI  295 (302)
Q Consensus       254 --------~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v-~~~~~~~~~~  295 (302)
                              ..+|+...|+..+.+|+++.+.+|+.+++++. ..++.+++|.
T Consensus        88 eVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent  138 (190)
T KOG4042|consen   88 EVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENT  138 (190)
T ss_pred             EeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcc
Confidence                    34566666777788888888888888888884 6777777763

>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3e-07  Score=78.00  Aligned_cols=62  Identities=21%  Similarity=0.266  Sum_probs=30.8

Q ss_pred             CcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEEC
Q 022113          213 DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVC  275 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~  275 (302)
                      +++|-+.+++.+.++|+ |..|+.+++||+|+++..|+|-+++.|.+++.+.+ ++||-++.||
T Consensus       288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iG  350 (407)
T KOG1460|consen  288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIG  350 (407)
T ss_pred             eeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeeccccccc
Confidence            33333333333333333 33455555666666666666666666666555532 4445444444

>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others

Probab=98.41  E-value=2e-06  Score=67.46  Aligned_cols=38  Identities=13%  Similarity=0.092  Sum_probs=24.8

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      ...++.||++++|+.+++|..+++|+++++++++++|.
T Consensus        70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~  107 (145)
T cd03349          70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT  107 (145)
T ss_pred             ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence            34456666666666666666666666666666666544

Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=98.36  E-value=9.2e-07  Score=71.98  Aligned_cols=79  Identities=22%  Similarity=0.313  Sum_probs=52.4

Q ss_pred             EcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECC---CcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          198 VHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       198 i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      |+|.++||.|-.+.-  +++||.-++||+++.     |.+++.+|.   ++-=+.=.||+|++||+++.|.+++.||+|+
T Consensus       151 ihpaa~ig~gilldhatgvvigeTAvvg~~vS-----ilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGega  225 (269)
T KOG4750|consen  151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVS-----ILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGA  225 (269)
T ss_pred             ccchhhcccceeeccccceeecceeEecccee-----eecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCc
Confidence            556666666665542  335555555554443     344444442   2222335799999999999999999999999


Q ss_pred             EECCceEEc
Q 022113          273 HVCDEIYSN  281 (302)
Q Consensus       273 ~v~~~~~v~  281 (302)
                      +|++|+++-
T Consensus       226 vIaAGsvV~  234 (269)
T KOG4750|consen  226 VIAAGSVVL  234 (269)
T ss_pred             EEeccceEE
Confidence            999998854

>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]

Probab=98.34  E-value=6.2e-07  Score=77.22  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113          191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      ....+-..-|++.+-.++.+.+-..+|.+|.||++     ++||.+|+|++++.|.+|++..+.+++.++.| ..+++|-
T Consensus       248 ~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~  321 (371)
T KOG1322|consen  248 PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEI-SSSIVGW  321 (371)
T ss_pred             cccCCccccCCccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHH-Hhhhccc
Confidence            33333334444555444555444455544444443     56788899999999999999999888888887 5566666


Q ss_pred             CcEECCceEEcCCeEecCccc
Q 022113          271 DVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       271 ~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      ++.||.++.+...++++.+++
T Consensus       322 ~~~IG~~~~id~~a~lG~nV~  342 (371)
T KOG1322|consen  322 NVPIGIWARIDKNAVLGKNVI  342 (371)
T ss_pred             cccccCceEEecccEeccceE
Confidence            677776666666666665554

>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]

Probab=98.18  E-value=1.7e-05  Score=65.17  Aligned_cols=36  Identities=14%  Similarity=0.149  Sum_probs=30.4

Q ss_pred             CCCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          251 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       251 ~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ...+.||++++|+.+++|.++++||+++++++++++
T Consensus       122 ~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVV  157 (190)
T COG0110         122 AGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV  157 (190)
T ss_pred             cCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEE
Confidence            335889999999999999999999999999888874

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=98.07  E-value=1.9e-05  Score=72.67  Aligned_cols=80  Identities=18%  Similarity=0.341  Sum_probs=52.3

Q ss_pred             CcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCC--CCCcceEEEeCCCC---------cEEEEEecCCCC---
Q 022113           44 EPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTG---------KVEKFVEKPKLF---  108 (302)
Q Consensus        44 ~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~v~~d~~~~---------~v~~~~ekp~~~---  108 (302)
                      .-++|..+|++ ...+ ...+. +  .+++++++..+.+.  .+..|++.+|+ ++         .+.+|..||...   
T Consensus        54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~-~~~~~~~~~~~~v~~~L~KpS~eem~  128 (414)
T PF07959_consen   54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDR-QGPDEEDLEYREVKDFLQKPSEEEMR  128 (414)
T ss_pred             cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCC-CCCccccchhhhHHHhhcCCCHHHHH
Confidence            36899999953 3332 11111 2  12567777776542  35579999987 56         688899998542   


Q ss_pred             --------CCCeEEEEEEEeCHhhHhhc
Q 022113          109 --------VGNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus       109 --------~~~~~~~Giy~~~~~~l~~l  128 (302)
                              ..-..++|++.|+.++.+.|
T Consensus       129 ~~~av~~~~~~~ldsG~~~~s~~~~e~L  156 (414)
T PF07959_consen  129 ASGAVLPDGNVLLDSGIVFFSSKAVESL  156 (414)
T ss_pred             hCCcccCCCcccccccceeccHHHHHHH
Confidence                    13356899999998877766

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.93  E-value=8.7e-06  Score=47.54  Aligned_cols=32  Identities=31%  Similarity=0.714  Sum_probs=14.1

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  228 (302)
                      .|+++++|++++.|.+++.||++|.|++++.|
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            34444444444444444444444444444443

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.87  E-value=7.9e-05  Score=61.17  Aligned_cols=70  Identities=19%  Similarity=0.341  Sum_probs=42.8

Q ss_pred             cEECCCCEECCCcEEeceEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          214 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      .+++....+|+++.|...++..+++|+.+|.+ ++.+.+.+++||.++.|....++...-.+|+++.|..+
T Consensus        34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Iegg  104 (277)
T COG4801          34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGG  104 (277)
T ss_pred             eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecC
Confidence            36666666777777776666677777777776 44666666666666666555444444444444444433

>COG4801 Predicted acyltransferase [General function prediction only]

Probab=97.84  E-value=5.6e-05  Score=62.02  Aligned_cols=60  Identities=13%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             ECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          222 VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       222 i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      ||+++.++-.++++...+|+++.|.+.++..+++|+.||++..++.++.++.||+++.|.
T Consensus        25 IG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~   84 (277)
T COG4801          25 IGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK   84 (277)
T ss_pred             EcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence            333333333344444444444444444444444444444444444444444444444443

>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix

Probab=97.83  E-value=1.5e-05  Score=46.45  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=13.3

Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      .|+++++|++++.|.+++.||+++.|++++.+
T Consensus         3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I   34 (36)
T PF00132_consen    3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI   34 (36)
T ss_dssp             EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred             EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence            33444444444444444444444444444433

A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=97.82  E-value=0.00045  Score=58.06  Aligned_cols=135  Identities=17%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             CCCChHHHHHcHhhhccC--CCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEE
Q 022113           24 PLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE   99 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~--~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~   99 (302)
                      ..|+.++++.+++++...  ..+.++++.||.  +...++.++++.+.+.+.+.++.+.+..+...++....++ +....
T Consensus        77 ~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  155 (223)
T cd02513          77 TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDN-GLEPV  155 (223)
T ss_pred             CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccC-Cceec
Confidence            458899999999887431  125789999999  4556699999999887778777777765554444443221 11222


Q ss_pred             EEEec--C---CCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecC-eeEecCChHHHHHHHH
Q 022113          100 KFVEK--P---KLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGLR  172 (302)
Q Consensus       100 ~~~ek--p---~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g-~~~digt~~~~~~a~~  172 (302)
                      .+.++  +   +.+.....++|+|+++++.+....   ..+          .+++..+..+. .-+||++++|+..++.
T Consensus       156 ~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~---~~~----------g~~~~~~~~~~~~~~dI~~~~D~~~ae~  221 (223)
T cd02513         156 NYPEDKRTRRQDLPPAYHENGAIYIAKREALLESN---SFF----------GGKTGPYEMPRERSIDIDTEEDFELAEA  221 (223)
T ss_pred             cCcccccCCcCCChhHeeECCEEEEEEHHHHHhcC---Ccc----------CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence            22221  1   122345678899999999774421   111          46666666654 5799999999977754

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=97.76  E-value=0.00035  Score=69.88  Aligned_cols=124  Identities=16%  Similarity=0.188  Sum_probs=76.9

Q ss_pred             cEEEEeCCeecCcC--HHHHHHHHHHcCCcEEEEEEeCCC--CCCcceEEEeCCC-CcEEEEEecCCCC--------CCC
Q 022113           45 PFFVLNSDVISEYP--FAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEEST-GKVEKFVEKPKLF--------VGN  111 (302)
Q Consensus        45 ~~lv~~gD~l~~~~--l~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~v~~d~~~-~~v~~~~ekp~~~--------~~~  111 (302)
                      .++|..||.+..++  +..      ..+++++......+.  .+..|++..++.. +++..|..||+..        ..-
T Consensus       154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~  227 (974)
T PRK13412        154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF  227 (974)
T ss_pred             ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence            68999999876554  221      123455555544432  3567999998631 5788899999642        234


Q ss_pred             eEEEEEEEeCHhhHhhccCC----------CCCccccchHHH----------HhcCcEEEEEe-cCeeEecCChHHHHHH
Q 022113          112 KINAGIYLLNPAVLDRIELR----------PTSIEKEVFPKI----------ALEGKLFAMVL-PGFWMDIGQPRDYITG  170 (302)
Q Consensus       112 ~~~~Giy~~~~~~l~~l~~~----------~~~~~~~~~~~l----------~~~~~v~~~~~-~g~~~digt~~~~~~a  170 (302)
                      +.++|+|+|+.++.+.|-..          ..++..||...|          ++..++....+ .+.|+.+||-+.|+..
T Consensus       228 l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~  307 (974)
T PRK13412        228 LMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISS  307 (974)
T ss_pred             EEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcC
Confidence            78999999999888766321          112233333332          12345555555 4589999999888864


Q ss_pred             HHHH
Q 022113          171 LRLY  174 (302)
Q Consensus       171 ~~~~  174 (302)
                      ...+
T Consensus       308 ~~~~  311 (974)
T PRK13412        308 TLAV  311 (974)
T ss_pred             chhH
Confidence            4333

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=97.76  E-value=0.0021  Score=54.85  Aligned_cols=156  Identities=14%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCC--
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSK--   85 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--   85 (302)
                      +.+|+++....+..+.||..... +...+.....+.++++.||. +.+ ..+.++++.+.+...+++.+..+..++..  
T Consensus        56 ~~~g~~~v~~~~~~~~Gt~r~~~-~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~  134 (238)
T TIGR00466        56 QKFGIEVCMTSKHHNSGTERLAE-VVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF  134 (238)
T ss_pred             HHcCCEEEEeCCCCCChhHHHHH-HHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence            34566544333444556555443 33333211125678899999 555 44889999886655677777777644211  


Q ss_pred             ---cceEEEeCCCCcEEEEEecCC----C-------CC--CCeEEEEEEEeCHhhHhhccCCCCCc---c--ccchHHHH
Q 022113           86 ---YGVVVMEESTGKVEKFVEKPK----L-------FV--GNKINAGIYLLNPAVLDRIELRPTSI---E--KEVFPKIA  144 (302)
Q Consensus        86 ---~g~v~~d~~~~~v~~~~ekp~----~-------~~--~~~~~~Giy~~~~~~l~~l~~~~~~~---~--~~~~~~l~  144 (302)
                         ...+..+. +|+.+.|...+-    .       ++  ..+...|+|.|++++|..+..-..+-   .  -|-++.+.
T Consensus       135 ~p~~vk~v~~~-~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le  213 (238)
T TIGR00466       135 NPNAVKVVLDS-QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLY  213 (238)
T ss_pred             CCCceEEEeCC-CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhh
Confidence               22333453 677766665411    1       11  14668999999999998764322211   1  12355566


Q ss_pred             hcCcEEEEEecCe-eEecCChHHH
Q 022113          145 LEGKLFAMVLPGF-WMDIGQPRDY  167 (302)
Q Consensus       145 ~~~~v~~~~~~g~-~~digt~~~~  167 (302)
                      .+.++.....+.. -..++||+|+
T Consensus       214 ~g~~i~~~~~~~~~~~~vdt~~d~  237 (238)
T TIGR00466       214 YGEKIHVKIAQEVPSVGVDTQEDL  237 (238)
T ss_pred             cCCceEEEEeCCCCCCCCCChHHc
Confidence            6778887776655 4589999886

>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]

Probab=97.68  E-value=8.2e-05  Score=60.83  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=9.0

Q ss_pred             EECCCcEECCCCEECCCcEE
Q 022113          209 LIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       209 ~i~~~~~ig~~~~i~~~~~i  228 (302)
                      +||+-++||.+|.|..++.+
T Consensus       170 vigeTAvvg~~vSilH~Vtl  189 (269)
T KOG4750|consen  170 VIGETAVVGDNVSILHPVTL  189 (269)
T ss_pred             eecceeEeccceeeecceee
Confidence            44444444444444444444

>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A

Probab=97.55  E-value=0.00014  Score=41.73  Aligned_cols=12  Identities=17%  Similarity=0.443  Sum_probs=3.7

Q ss_pred             EECCCcEECCce
Q 022113          267 ILGEDVHVCDEI  278 (302)
Q Consensus       267 ~i~~~~~v~~~~  278 (302)
                      .||++|.|++++
T Consensus        19 ~igd~~~i~~g~   30 (34)
T PF14602_consen   19 TIGDGVIIGAGV   30 (34)
T ss_dssp             EE-TTEEE-TTE
T ss_pred             EEcCCCEECCCC
Confidence            333333333333

...

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=97.25  E-value=0.019  Score=47.57  Aligned_cols=163  Identities=16%  Similarity=0.182  Sum_probs=107.4

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEE-EeCCe-ecCc-CHHHHHHHHHHcCCcEEEEEEeCCCCC---
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV-LNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPS---   84 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv-~~gD~-l~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~---   84 (302)
                      .+|.+.-.-....+.||-- +..+...+..+ ++.++| +.||. +.+. .+.++++...++..+++.+..+..++.   
T Consensus        61 ~~G~~avmT~~~h~SGTdR-~~Ev~~~l~~~-~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~  138 (247)
T COG1212          61 AFGGEAVMTSKDHQSGTDR-LAEVVEKLGLP-DDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAF  138 (247)
T ss_pred             HhCCEEEecCCCCCCccHH-HHHHHHhcCCC-cceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhc
Confidence            3577776666677888855 44555555443 244554 79999 5554 488888888888788877777764321   


Q ss_pred             --CcceEEEeCCCCcEEEEEecCC-CC------CCCeEEEEEEEeCHhhHhhccCCCCCcccc-----chHHHHhcCcEE
Q 022113           85 --KYGVVVMEESTGKVEKFVEKPK-LF------VGNKINAGIYLLNPAVLDRIELRPTSIEKE-----VFPKIALEGKLF  150 (302)
Q Consensus        85 --~~g~v~~d~~~~~v~~~~ekp~-~~------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~-----~~~~l~~~~~v~  150 (302)
                        .---+.+|. +|+-+.|...|- +.      ...+.-.|+|.|+.++|..+..-..+....     -+..+-.+.++.
T Consensus       139 nPN~VKvV~d~-~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~  217 (247)
T COG1212         139 NPNVVKVVLDK-EGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIH  217 (247)
T ss_pred             CCCcEEEEEcC-CCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeE
Confidence              112344664 789999876642 11      245667899999999998764433333222     244566677888


Q ss_pred             EEEecCee-EecCChHHHHHHHHHHHH
Q 022113          151 AMVLPGFW-MDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       151 ~~~~~g~~-~digt~~~~~~a~~~~l~  176 (302)
                      +...+... ..+.||+|+.++.+++.+
T Consensus       218 v~i~~~~p~~gVDT~EDLe~v~~~~~~  244 (247)
T COG1212         218 VEIVKEVPSIGVDTPEDLERVRKILSN  244 (247)
T ss_pred             EEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence            88777554 899999999988776643

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=97.07  E-value=0.039  Score=46.51  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             HHhhcCCcEEEEEec----CCCCCChHHHHHcHhhhcc-CCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEe
Q 022113            7 EFEAKLGIKIICSQE----TEPLGTAGPLALARDKLID-DTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~----~~~~Gt~~al~~a~~~i~~-~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      ++..++|.++.+..-    ....|+.++++.++..+.. ...+.++++.+|. +. ..++.++++.+.+.+.+..+.+.+
T Consensus        54 ~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~  133 (222)
T TIGR03584        54 EVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS  133 (222)
T ss_pred             HHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence            334557777665321    2356888999999988742 1135688899999 44 466999999998876788888877


Q ss_pred             CCCCCCcceEEEeCCCCcEEEEEec----CCC--CCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEE
Q 022113           80 VDEPSKYGVVVMEESTGKVEKFVEK----PKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMV  153 (302)
Q Consensus        80 ~~~~~~~g~v~~d~~~~~v~~~~ek----p~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~  153 (302)
                      ...+..+. ...++ +|+...+...    +++  +.....+.++|+++++.|..-  + ..+          .++...|.
T Consensus       134 ~~~~~~~~-~~~~~-~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~--~-~~~----------~~~~~~~~  198 (222)
T TIGR03584       134 FAFPIQRA-FKLKE-NGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES--G-PIF----------SPHSIPIV  198 (222)
T ss_pred             cCCChHHh-eEECC-CCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc--C-Ccc----------CCCcEEEE
Confidence            54322222 23333 5665554421    111  122356889999999987431  1 111          45666666


Q ss_pred             ecC-eeEecCChHHHHHHHH
Q 022113          154 LPG-FWMDIGQPRDYITGLR  172 (302)
Q Consensus       154 ~~g-~~~digt~~~~~~a~~  172 (302)
                      .+. ...||.+++|+.-|+.
T Consensus       199 m~~~~~iDID~~~D~~~ae~  218 (222)
T TIGR03584       199 LPRHLVQDIDTLEDWERAEL  218 (222)
T ss_pred             eCccceeCCCCHHHHHHHHH
Confidence            654 5799999999988765

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=96.96  E-value=0.02  Score=52.17  Aligned_cols=129  Identities=10%  Similarity=0.055  Sum_probs=83.6

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEE
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFV  102 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~  102 (302)
                      .+..+++++++..+..   +.+++..+|. +.+.+ +.++++.+.+.  +.++...+..++.+|+...++.  ..+. ..
T Consensus        81 ~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~-~~  152 (378)
T PRK09382         81 ATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK-LI  152 (378)
T ss_pred             chHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE-EE
Confidence            3467889999998853   5677888887 55544 78888776543  5778888888888888666653  3443 44


Q ss_pred             ecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113          103 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       103 ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      ++|+.+....           +++... ....+ .+-...+.. ..++..+.-+..|+++++|+|+..++..+
T Consensus       153 QTPQ~f~~~~-----------l~~a~~-~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l  212 (378)
T PRK09382        153 QTPQLSRTKT-----------LKAAAD-GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL  212 (378)
T ss_pred             ECCCCCCHHH-----------HHHHHh-CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence            8886652211           111111 12222 232333333 35777777788999999999999987755

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=96.60  E-value=0.019  Score=48.00  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEe
Q 022113           26 GTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE  103 (302)
Q Consensus        26 Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~e  103 (302)
                      +..++++.++..+.  ..+.++++.||. +.+ ..+.++++.+.+.  +.++++.+..+    ++...++ +|.+..+.+
T Consensus        76 ~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~~----~v~~~~~-~g~~~~~~~  146 (217)
T TIGR00453        76 TRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVAD----TLKRVEA-DGFIVETVD  146 (217)
T ss_pred             hHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEeccc----eEEEEcC-CCceeecCC
Confidence            35688999998772  126788899999 555 4588998987664  34445554432    4455553 577777766


Q ss_pred             cCCCCCCCeEEEEEEEeCHhhHhhccC----CCCCccccchHHHH-hcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113          104 KPKLFVGNKINAGIYLLNPAVLDRIEL----RPTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       104 kp~~~~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                      +..   -....+ .|.|+...+..+-.    ....+ .+....+. ...++.....+...++|++|+++..+..
T Consensus       147 r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~  215 (217)
T TIGR00453       147 REG---LWAAQT-PQAFRTELLKKALARAKEEGFEI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA  215 (217)
T ss_pred             hHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence            432   123444 68999887754421    11111 11112222 2346666666666689999999987754

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=96.60  E-value=0.022  Score=48.03  Aligned_cols=135  Identities=12%  Similarity=0.048  Sum_probs=79.7

Q ss_pred             CChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEe
Q 022113           26 GTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE  103 (302)
Q Consensus        26 Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~e  103 (302)
                      +.+++++.++..+.+  .+.++++.||. +.+ ..++++++.+.+.+  ..+++.+..++  +..  .++ +|.+..+.+
T Consensus        81 ~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~~--v~~-~g~~~~~~~  151 (227)
T PRK00155         81 ERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IKR--SDD-GGGIVDTPD  151 (227)
T ss_pred             hHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EEE--EcC-CCceeecCC
Confidence            568999999998732  25778889998 554 55899999887653  44444444332  222  243 466655432


Q ss_pred             cCCCCCCCeEEEEEEEeCHhhHhhccCC----CCCccccchHHHHh--cCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113          104 KPKLFVGNKINAGIYLLNPAVLDRIELR----PTSIEKEVFPKIAL--EGKLFAMVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       104 kp~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~~~~l~~--~~~v~~~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      ...   -.... +.+.|+.+.|..+-..    ...+ .+. ..++.  ..++.....+..+++|++|+++..++..+.
T Consensus       152 r~~---~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~-~d~-~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~  223 (227)
T PRK00155        152 RSG---LWAAQ-TPQGFRIELLREALARALAEGKTI-TDD-ASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK  223 (227)
T ss_pred             hHH---heeee-CCccchHHHHHHHHHHHHhcCCCc-CcH-HHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence            211   12223 3889998887654211    1111 111 12222  245666555666889999999988876553

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=96.27  E-value=0.033  Score=46.52  Aligned_cols=139  Identities=12%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.++.++  .+..++++.++..+.....+.++++.||+ +.+ ..++++++.+.+.+  ..+.+.+..+    +....|
T Consensus        70 ~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~~~  141 (218)
T cd02516          70 VVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD----TIKRVD  141 (218)
T ss_pred             CeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc----cEEEec
Confidence            34555443  25578999999987411236678889998 555 44899999886554  3334444332    223344


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCC----CCCccccchHHHHhc--CcEEEEEecCeeEecCChHH
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR----PTSIEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRD  166 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~~~~l~~~--~~v~~~~~~g~~~digt~~~  166 (302)
                      + +|.+.++.+..+   -..+.+. ++|+.+.|..+-..    ...+ .+. ..++..  .++....-+..-+||+||++
T Consensus       142 ~-~g~~~~~~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~-td~-~~~~~~~~~~v~~v~~~~~~~~i~t~~d  214 (218)
T cd02516         142 D-DGVVVETLDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEF-TDD-ASLVEAAGGKVALVEGSEDNIKITTPED  214 (218)
T ss_pred             C-CCceeecCChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCc-CcH-HHHHHHcCCCeEEEecCcccccCCCHHH
Confidence            3 688888776532   2355667 88998888654211    1111 111 222222  45665554455679999999


Q ss_pred             HH
Q 022113          167 YI  168 (302)
Q Consensus       167 ~~  168 (302)
                      +.
T Consensus       215 l~  216 (218)
T cd02516         215 LA  216 (218)
T ss_pred             Hh
Confidence            84

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=95.74  E-value=0.097  Score=42.45  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             EEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           15 KIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        15 ~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      .+.++.++ ...|++++++.++.....  .+.++++.+|+ +. ...++++++.+.+...++++....            
T Consensus        63 ~v~~v~~~~~~~g~~~si~~~l~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~------------  128 (188)
T TIGR03310        63 NITLVHNPQYAEGQSSSIKLGLELPVQ--SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK------------  128 (188)
T ss_pred             CeEEEECcChhcCHHHHHHHHhcCCCC--CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC------------
Confidence            34555543 346899999999883221  36899999999 44 455888888876655443322110            


Q ss_pred             eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcC--cEEEEEe--cCeeEecCChHHH
Q 022113           92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG--KLFAMVL--PGFWMDIGQPRDY  167 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~--~v~~~~~--~g~~~digt~~~~  167 (302)
                         ++        +..+         .++++..+..+.....   ..-+..++++.  +.....+  .+.++|++||++|
T Consensus       129 ---~~--------~~~P---------l~~~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~  185 (188)
T TIGR03310       129 ---GK--------RGHP---------VLFPRKLFPELLALTG---DTGGRQILRELPHEVKYVEVKDPGILFDIDTPEDY  185 (188)
T ss_pred             ---Cc--------cCCC---------EEECHHHHHHHHhCCC---CccHHHHHHhCcccEEEEEcCCCceeECCCCHHHH
Confidence               11        0011         1488888877753211   11233333332  3333333  3568999999998


Q ss_pred             H
Q 022113          168 I  168 (302)
Q Consensus       168 ~  168 (302)
                      .
T Consensus       186 ~  186 (188)
T TIGR03310       186 Q  186 (188)
T ss_pred             h
Confidence            5

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=94.82  E-value=0.15  Score=40.26  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=44.2

Q ss_pred             EEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEE
Q 022113           16 IICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVT   78 (302)
Q Consensus        16 i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~   78 (302)
                      ++++.++ ...|++++++.++..+..  .+.|+++++|+ +.+ ..+.++++.+.+++.++++...
T Consensus        60 ~~~v~~~~~~~G~~~sl~~a~~~~~~--~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   60 IKVVVDPEPGQGPLASLLAALSQLPS--SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             SEEEE-STSSCSHHHHHHHHHHTSTT--SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ceEEEeccccCChHHHHHHHHHhccc--CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence            4445553 358999999999998732  38999999999 434 4489999998877776655443

...

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=93.66  E-value=0.8  Score=38.60  Aligned_cols=134  Identities=11%  Similarity=0.061  Sum_probs=75.1

Q ss_pred             hHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEecC
Q 022113           28 AGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKP  105 (302)
Q Consensus        28 ~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp  105 (302)
                      .++++.++..+..  .+.++++.||. +.+.+ +.++++.+.+.+..  +.+.+..+    .+...+  ++.++...++.
T Consensus        85 ~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d----ti~~~~--~~~~~~~i~r~  154 (230)
T PRK13385         85 QESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD----TVKRVK--DKQVIETVDRN  154 (230)
T ss_pred             HHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc----eEEEEc--CCeeEeccCHH
Confidence            4899999988743  24567778999 66555 88999988765432  33333322    222222  35554433321


Q ss_pred             CCCCCCeEEEEEEEeCHhhHhhc-cC---CCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113          106 KLFVGNKINAGIYLLNPAVLDRI-EL---RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       106 ~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      .    -+..-+.+.|+.+.+... ..   ....+..+.........++....-+...+.|.+|+|+..|...+.
T Consensus       155 ~----~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~  224 (230)
T PRK13385        155 E----LWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ  224 (230)
T ss_pred             H----HhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence            1    112224778887766433 21   111222111122223456666665667789999999999876653

>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []

Probab=93.35  E-value=0.17  Score=46.80  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=25.3

Q ss_pred             CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccE
Q 022113          213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI  249 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~  249 (302)
                      ++++..++.++++++|++|.++.++.||++|.|.++-
T Consensus       284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~  320 (414)
T PF07959_consen  284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVD  320 (414)
T ss_pred             EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence            6666677777777777777777777777777665543

; GO: 0016772 transferase activity, transferring phosphorus-containing groups

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=92.88  E-value=0.69  Score=35.79  Aligned_cols=72  Identities=18%  Similarity=0.172  Sum_probs=53.7

Q ss_pred             HHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEe
Q 022113            4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus         4 ~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      .+.++.+ .+..++|+..++..|-+.++..+.+....   +.++++..|.+...+ +..+++.+.+.+.++.+....
T Consensus        44 ~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~---~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~  116 (169)
T PF00535_consen   44 ILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKG---EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI  116 (169)
T ss_dssp             HHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--S---SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             ccccccc-cccccccccccccccccccccccccccce---eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence            4445444 57889999998878999999999998864   677888999988777 889999998877766554443

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=92.69  E-value=1.3  Score=36.18  Aligned_cols=41  Identities=12%  Similarity=0.050  Sum_probs=31.0

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHH
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKA   68 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~   68 (302)
                      .|+..+++.++.....   +.++++.+|+ +.+.+ +.++++.+.+
T Consensus        74 ~g~~~~i~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~  116 (193)
T PRK00317         74 PGPLAGILAGLKQART---EWVLVVPCDTPFIPPDLVARLAQAAGK  116 (193)
T ss_pred             CCCHHHHHHHHHhcCC---CeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence            6888999999886542   6789999999 55544 7778776543

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=91.72  E-value=2.1  Score=35.08  Aligned_cols=124  Identities=16%  Similarity=0.222  Sum_probs=76.9

Q ss_pred             cEEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           14 IKIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        14 ~~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      ..++++..+ -..|.+.+++.+......+. +.++++.||+  +...++.++++.+.+.+ .   .+.+.     |    
T Consensus        68 ~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p~-----~----  133 (199)
T COG2068          68 LGVTVVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRPV-----Y----  133 (199)
T ss_pred             CCeEEEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeeee-----c----
Confidence            445555553 35699999999999986532 4788899999  66777999988886652 2   11111     0    


Q ss_pred             EeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEE--EEe-cCeeEecCChHHH
Q 022113           91 MEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFA--MVL-PGFWMDIGQPRDY  167 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~--~~~-~g~~~digt~~~~  167 (302)
                          .|..                .+=.+|++.+|..+.....+   .-...+++......  ... .+...||+||++|
T Consensus       134 ----~g~r----------------G~Pv~~~~~~~~~l~~l~GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~  190 (199)
T COG2068         134 ----GGAR----------------GHPVLLSKDLFPALARLSGD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDL  190 (199)
T ss_pred             ----cCCc----------------CCceeechhHHHHHhhcCCc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHH
Confidence                1100                11245667777666533322   22455555544333  333 5788999999999


Q ss_pred             HHHHHHH
Q 022113          168 ITGLRLY  174 (302)
Q Consensus       168 ~~a~~~~  174 (302)
                      ..+...+
T Consensus       191 ~~a~~~~  197 (199)
T COG2068         191 ARAQDLL  197 (199)
T ss_pred             HHHHHhh
Confidence            9887644

>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes

Probab=91.32  E-value=0.021  Score=49.50  Aligned_cols=111  Identities=15%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             hhHHHHHhhcCCcEEEEEec-CCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCc------EE
Q 022113            2 LNFLKEFEAKLGIKIICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE------AS   74 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~-~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~------~~   74 (302)
                      ++|+++.. .....+.++.| ..|..++++.....+...   .+.+..-+||++...+.+.+++.|.+++..      ++
T Consensus        69 ~~~l~~~~-~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~---~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vD  144 (266)
T cd04180          69 QCYFEKIN-QKNSYVITFMQGKLPLKNDDDARDPHNKTK---CHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVD  144 (266)
T ss_pred             HHHHHHcC-CCCCceEEEEeCCceEEeCCCCcccCCCCc---eeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccC
Confidence            45666633 22334555555 668899887763222111   145566799999988888899999998866      44


Q ss_pred             EEEEeCCCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeC
Q 022113           75 IMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN  121 (302)
Q Consensus        75 l~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~  121 (302)
                      .+++...||..+|++..++ ......+.+|+...    ...|+.+..
T Consensus       145 N~la~v~DP~~lG~~~~~~-~~~~~kvv~K~~~d----~k~G~~~~~  186 (266)
T cd04180         145 NLLVKVADPLFIGIAIQNR-KAINQKVVPKTRNE----ESGGYRIAN  186 (266)
T ss_pred             ccCccccCHHHHHHHHHcC-CCEEEEEEECCCCC----CeEEEEEEe
Confidence            4455555777788877664 57888899998543    245665543

This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o

>PLN02474 UTP--glucose-1-phosphate uridylyltransferase

Probab=90.95  E-value=14  Score=34.73  Aligned_cols=105  Identities=18%  Similarity=0.196  Sum_probs=64.0

Q ss_pred             CCCChHHHHHc-----HhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCC-CcceEEEeCCCCc
Q 022113           24 PLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-KYGVVVMEESTGK   97 (302)
Q Consensus        24 ~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~v~~d~~~~~   97 (302)
                      |.|-|+-....     ++.+....-+.+.+.+.|.+...-=..++..+..++++.++=+++...+. +=|.+...+..-+
T Consensus       189 P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk~~  268 (469)
T PLN02474        189 PPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQ  268 (469)
T ss_pred             eCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEECCEEE
Confidence            55666643322     33333333467788899997533224477888888888887777654332 3355443211235


Q ss_pred             EEEEEecCCCC--------CCCeEEEEEEEeCHhhHhhc
Q 022113           98 VEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus        98 v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l  128 (302)
                      ++++.+-|...        .-...|++.++|+-++++.+
T Consensus       269 lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~  307 (469)
T PLN02474        269 LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL  307 (469)
T ss_pred             EEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence            77777766421        23578999999998888765

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=89.83  E-value=1.4  Score=35.63  Aligned_cols=46  Identities=9%  Similarity=-0.030  Sum_probs=35.1

Q ss_pred             CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcC
Q 022113           22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG   70 (302)
Q Consensus        22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~   70 (302)
                      +...|++++|+.+++.+..   +.++++.+|+ +.+.+ +.++++.+.+..
T Consensus        70 ~~~~g~~~si~~al~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~~~  117 (186)
T TIGR02665        70 ADFPGPLAGILAGLRWAGT---DWVLTVPCDTPFLPEDLVARLAAALEASD  117 (186)
T ss_pred             CCCCCCHHHHHHHHHhcCC---CeEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence            4468999999999998843   6899999999 66555 777777665433

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=88.50  E-value=4.7  Score=36.70  Aligned_cols=45  Identities=13%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCc
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGE   72 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~   72 (302)
                      .|...+++.++..+..   +.++++.||+ +.+.+ +.++++.+.+.+++
T Consensus        78 ~G~~~si~~gl~~~~~---~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~  124 (366)
T PRK14489         78 QGPLSGILAGLEHADS---EYLFVVACDTPFLPENLVKRLSKALAIEGAD  124 (366)
T ss_pred             CChHHHHHHHHHhcCC---CcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence            5888999999998743   6799999998 55554 77777766554444

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=88.30  E-value=2.9  Score=34.34  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV   77 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~   77 (302)
                      +.++++.++.+..+.++..+...|-+.|+..+......   +-++++.+|...+.+ +.++++...+.+.++.+..
T Consensus        46 ~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~  118 (211)
T cd04188          46 EVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAIGS  118 (211)
T ss_pred             HHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence            34455555555446777777778999999999988753   667778999977665 7888887555555554443

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=88.26  E-value=1  Score=36.18  Aligned_cols=49  Identities=16%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCC
Q 022113           22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGG   71 (302)
Q Consensus        22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~   71 (302)
                      ....|++++++.++.++.. ..+.++++.+|+ +.+ ..++++++.+.+...
T Consensus        71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~  121 (186)
T cd04182          71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA  121 (186)
T ss_pred             ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence            3457999999999998852 136899999999 444 448888887765443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=87.05  E-value=1.6  Score=35.44  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=39.8

Q ss_pred             CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEe
Q 022113           22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus        22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      ....|...++..++..+..  .++|+++.+|+  +.+..+.++++.|.+.+...+..+.+
T Consensus        70 ~~g~G~~~~l~~al~~~~~--~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~  127 (183)
T TIGR00454        70 ASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP  127 (183)
T ss_pred             cCCCCHHHHHHHHhhcccC--CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence            4456777888888876532  37899999999  34566899999887766555544443

At this time this gene appears to be present only in Archea

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=84.97  E-value=2.3  Score=34.10  Aligned_cols=48  Identities=10%  Similarity=0.060  Sum_probs=35.3

Q ss_pred             EEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHH
Q 022113           16 IICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFH   66 (302)
Q Consensus        16 i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~   66 (302)
                      ++++.++ ...|+..+|+.++..+..   +.++++.+|+ +.+. .+.++++.+
T Consensus        59 ~~~v~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~  109 (181)
T cd02503          59 VPVIPDEPPGKGPLAGILAALRAAPA---DWVLVLACDMPFLPPELLERLLAAA  109 (181)
T ss_pred             CcEeeCCCCCCCCHHHHHHHHHhcCC---CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence            3444443 467999999999998753   7899999999 4444 477787766

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=84.32  E-value=11  Score=30.86  Aligned_cols=111  Identities=12%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEE
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF  101 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~  101 (302)
                      ..|...++..++.....   +.++++.+|+ +.+.+ +.++..   +.+.               ..+.... +++    
T Consensus        75 ~~gpl~gi~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~---~~~~---------------~~~~~~~-~~~----  128 (196)
T PRK00560         75 LFSPLFGIINAFLTLQT---PEIFFISVDTPFVSFESIKKLCG---KENF---------------SVTYAKS-PTK----  128 (196)
T ss_pred             CCCcHHHHHHHHHhcCC---CeEEEEecCcCcCCHHHHHHHHh---cCCC---------------CEEEEcc-CCc----
Confidence            45777777777665443   7899999999 55655 455521   1111               1111111 111    


Q ss_pred             EecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEec--CeeEecCChHHHHHHHH
Q 022113          102 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR  172 (302)
Q Consensus       102 ~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~--g~~~digt~~~~~~a~~  172 (302)
                                 ...-..+|++++++.+...... ...-...++++.++....++  +.+.|++||++|.++.+
T Consensus       129 -----------~~Pl~al~~~~~~~~l~~~l~~-~~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~  189 (196)
T PRK00560        129 -----------EHYLISLWHQSLLNALIYALKT-QNYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQ  189 (196)
T ss_pred             -----------eeeeEEEEcHHHHHHHHHHHHh-CCccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHH
Confidence                       1112468888888776421000 00123444555444444443  46789999999977644

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=83.90  E-value=8.5  Score=30.44  Aligned_cols=71  Identities=10%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV   77 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~   77 (302)
                      +.++++..++. .+.++..++..|-+.++..+......   +.++++.+|...+.+ +.++++...+.+.++.+..
T Consensus        44 ~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~  115 (185)
T cd04179          44 EIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS  115 (185)
T ss_pred             HHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence            34444444443 34667777778999999999887753   667788999876666 7888887556555554444

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=82.08  E-value=4  Score=33.10  Aligned_cols=47  Identities=15%  Similarity=0.103  Sum_probs=33.6

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcC
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG   70 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~   70 (302)
                      ..|.+++++.++..+.....+.++++.+|+ +.+.+ +.++++.+.+..
T Consensus        77 ~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~  125 (190)
T TIGR03202        77 CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP  125 (190)
T ss_pred             hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence            458899999999876432236789999999 55555 777877665433

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]

Probab=82.03  E-value=25  Score=28.28  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHH
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHK   67 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~   67 (302)
                      +|  +..+..+ ..|.-.-++.|.+.+.    .++|++++|. +.+ ..+..+++.+.
T Consensus        62 ~g--v~vi~tp-G~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~  112 (177)
T COG2266          62 VG--VKVIETP-GEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA  112 (177)
T ss_pred             cC--ceEEEcC-CCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence            55  4444443 4588889999999995    4999999999 444 33677777665

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=80.51  E-value=10  Score=28.23  Aligned_cols=50  Identities=14%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHH
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH   66 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~   66 (302)
                      ..+.+.......|.++++..+......   +.++++.+|..++.+ +..++..+
T Consensus        52 ~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~v~~~d~D~~~~~~~~~~~~~~~  102 (156)
T cd00761          52 PRVIRVINEENQGLAAARNAGLKAARG---EYILFLDADDLLLPDWLERLVAEL  102 (156)
T ss_pred             CCeEEEEecCCCChHHHHHHHHHHhcC---CEEEEECCCCccCccHHHHHHHHH
Confidence            345666667778999999999988743   678889999988777 45543444

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]

Probab=80.44  E-value=24  Score=29.39  Aligned_cols=149  Identities=15%  Similarity=0.170  Sum_probs=88.5

Q ss_pred             hhcCCcEEEEEecCC-CCCChH---HHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113            9 EAKLGIKIICSQETE-PLGTAG---PLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus         9 ~~~~g~~i~~~~~~~-~~Gt~~---al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +.+.|.++-+...++ ..+++.   ++..+...+... .+.++++.+=.  +...++++..+.+.++..+-.+.+++-+.
T Consensus        60 A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~  138 (228)
T COG1083          60 AKKYGAKVFLKRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH  138 (228)
T ss_pred             HHHhCccccccCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc
Confidence            666777765444432 334444   455666665442 23466666644  55677999999998888887777877653


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCC-------CCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEe-
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL-  154 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~-  154 (302)
                      .. |--+..+  +|.+..+.|.|...       .....++.+|+++.+.|..-   ..-+          ..+...|.. 
T Consensus       139 ~p-~k~f~~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~---~~~f----------~~~~~~y~m~  202 (228)
T COG1083         139 HP-YKAFSLN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEN---DCFF----------IPNTILYEMP  202 (228)
T ss_pred             ch-HHHHHhc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHhhc---Ccee----------cCCceEEEcC
Confidence            21 1112222  46777777776321       23456889999999888431   1111          122333433 


Q ss_pred             cCeeEecCChHHHHHHHHHH
Q 022113          155 PGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       155 ~g~~~digt~~~~~~a~~~~  174 (302)
                      +....||.+..++.-++..+
T Consensus       203 ~~~~~DID~~~Dl~iae~l~  222 (228)
T COG1083         203 EDESIDIDTELDLEIAENLI  222 (228)
T ss_pred             cccccccccHHhHHHHHHHh
Confidence            34578999999998776544

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=80.38  E-value=9  Score=32.19  Aligned_cols=61  Identities=5%  Similarity=0.069  Sum_probs=42.2

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV   77 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~   77 (302)
                      .++.+....+..|-+.|+..+......   +.++.+.+|...+.+ +.++++.+.+...++.++.
T Consensus        59 ~~i~~~~~~~~~G~~~a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~  120 (241)
T cd06427          59 FRVVVVPPSQPRTKPKACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ  120 (241)
T ss_pred             eeEEEecCCCCCchHHHHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence            455555555556888899888887643   566778999988777 7788888765545554443

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=80.33  E-value=12  Score=29.72  Aligned_cols=57  Identities=12%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEE
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI   75 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l   75 (302)
                      ++.++......|.+.|+..+......   +.++++.+|...+.+ +.++++.. +.+.++.+
T Consensus        56 ~i~~i~~~~n~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~  113 (181)
T cd04187          56 RVKVIRLSRNFGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAKW-EEGYDVVY  113 (181)
T ss_pred             CEEEEEecCCCCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEE
Confidence            56666666667999999998887653   677778999977665 77887763 44444433

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	302
1tzf_A	259	X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosph		3e-15
2ggo_A	401	Crystal Structure Of Glucose-1-Phosphate Thymidylyl		7e-12
2qkx_A	391	N-Acetyl Glucosamine 1-Phosphate Uridyltransferase		4e-05
3spt_A	501	Crystal Structure Of Glmu From Mycobacterium Tuberc		7e-05
3d8v_A	495	Crystal Structure Of Glmu From Mycobacterium Tuberc		7e-05
3foq_A	503	Crystal Structure Of N-Acetylglucosamine-1-Phosphat		7e-05
1lvw_A	295	Crystal Structure Of Glucose-1-phosphate Thymidylyl		3e-04

>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate Cytidylyltransferase From Salmonella Typhi Length = 259

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 27  TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY 86
           T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++
Sbjct: 108 TGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRF 163
Query: 87  GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE 146
           G + ++   G+V  F EKPK   G  IN G ++LNP+V+D I+   T+ E+E    +A +
Sbjct: 164 GALDIQ--AGQVRSFQEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQ 220
Query: 147 GKLFAMVLPGFWMDIGQPRD--YITG 170
           G+L A   PGFW  +   RD  Y+ G
Sbjct: 221 GELMAFEHPGFWQPMDTLRDKVYLEG 246

>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate Thymidylyltransferase From Sulfolobus Tokodaii Length = 401

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 40/294 (13%)
Query: 8   FEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEF 65
           FE KL    I +Q+ +  GT   +  A+  D+ +   G+ FF       +E     +I  
Sbjct: 61  FEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFS------NEKEICNIITL 114
Query: 66  HKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV- 124
                 E +I+  KV  P  YGV+V++     + K +EKP++   N INAGIY LN  + 
Sbjct: 115 K-----ENAIIGVKVSNPKDYGVLVLDNQNN-LSKIIEKPEIPPSNLINAGIYKLNSDIF 168
Query: 125 --LDRIELRPTSIEKEVFPKIALEGK---LFAMVLPGFWMDIGQPRDYI-TGXXXXXXXX 178
             LD+I +     E E+   I L  K   +  +   G+WMDIG+P + I           
Sbjct: 169 TYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLV 227
Query: 179 XXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGCV----- 221
                        I G V++ E A+            IG+G  IGP+  + P  +     
Sbjct: 228 FSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKN 287
Query: 222 -VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
            + + V +    +M G +I   + +  S+I      G    + N+    ++V V
Sbjct: 288 KIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341

>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From Mycobacterium Tuberculosis Complex With N-Acetyl Glucosamine 1-Phosphate Length = 391

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4   FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
            + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A+
Sbjct: 68  LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 127
Query: 62  MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
           +I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y
Sbjct: 128 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 187
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
             + A L      L   + ++E++
Sbjct: 188 AFDIAALRSALSRLSSNNAQQELY 211

>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Acetyl Coenzyme A And Uridine-Diphosphate-N-Acetylglucosamine Length = 501

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4   FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
            + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A+
Sbjct: 72  LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 131
Query: 62  MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
           +I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y
Sbjct: 132 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 191
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
             + A L      L   + ++E++
Sbjct: 192 AFDIAALRSALSRLSSNNAQQELY 215

>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis In Complex With Uridine-Diphosphate-N-Acetylglucosamine Length = 495

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4   FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
            + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A+
Sbjct: 66  LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 125
Query: 62  MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
           +I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y
Sbjct: 126 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 185
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
             + A L      L   + ++E++
Sbjct: 186 AFDIAALRSALSRLSSNNAQQELY 209

>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate Uridyltransferase (Glmu) From Mycobacterium Tuberculosis In A Cubic Space Group Length = 503

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4   FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
            + E    LG  I  + +  PLGT   +      L DD      V + D  ++     A+
Sbjct: 74  LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 133
Query: 62  MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
           +I  H+A     +++ T +D+P  YG ++     E    VE+    P      ++NAG+Y
Sbjct: 134 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 193
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
             + A L      L   + ++E++
Sbjct: 194 AFDIAALRSALSRLSSNNAQQELY 217

>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 10  AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH 69
           ++ G++     + EP G A    + +D + D   +   VL  +V   + F+E++    + 
Sbjct: 72  SQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSEILRRAASL 129
Query: 70  GGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL---- 125
              A I    V +P  +GVV  + S G+V    EKP     N +  G+Y  +  V+    
Sbjct: 130 EDGAVIFGYYVRDPRPFGVVEFD-SEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIAR 188
Query: 126 -----DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 162
                DR EL  TS+ +E      L  +L    +   W+D G
Sbjct: 189 RIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	302
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	8e-41
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	2e-37
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	4e-33
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	7e-25
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	9e-18
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	2e-15
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	5e-14
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	8e-13
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	1e-09
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	4e-08
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	1e-09
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	8e-04
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-09
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	2e-06
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	1e-08
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	2e-07
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	1e-08
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	4e-08
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	1e-08
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	1e-07
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	3e-08
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	2e-07
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	4e-08
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	1e-07
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	4e-07
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	1e-06
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	6e-05
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	2e-06
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	1e-05
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	3e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	3e-05
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	9e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	3e-05
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	8e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-05
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	4e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	5e-05
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	5e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	6e-05
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	1e-04
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	9e-05
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	3e-04

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232

 Score =  140 bits (356), Expect = 8e-41
 Identities = 28/167 (16%), Positives = 63/167 (37%), Gaps = 16/167 (9%)

Query: 3   NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEM 62
            FLK+       KI+     E  G    L +A++ +     + F +   D +      + 
Sbjct: 75  AFLKDK--GFNYKIVRHDRPE-KGNGYSLLVAKNHV----EDRFILTMGDHVYS---QQF 124

Query: 63  IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNP 122
           IE      G  +    +  +  +   + +E+  G+V K  +  +    + ++ G ++L+ 
Sbjct: 125 IEKAVRGEGVIADREPRFVDIGEATKIRVED--GRVAKIGKDLRE--FDCVDTGFFVLDD 180

Query: 123 AVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMDIGQPRDYI 168
           ++ +  E +    E+    +I    +L    +    WMD+    D  
Sbjct: 181 SIFEHAE-KLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVR 226

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401

 Score =  136 bits (345), Expect = 2e-37
 Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 63/284 (22%)

Query: 20  QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMV 77
           Q+ +  GT   +  A+        +   ++  D+   +E     +I        E +I+ 
Sbjct: 73  QKDDIKGTGAAILSAKFN------DEALIIYGDLFFSNEKEICNIITLK-----ENAIIG 121

Query: 78  TKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEK 137
            KV  P  YGV+V++     + K +EKP++   N INAGIY LN  +   ++    S   
Sbjct: 122 VKVSNPKDYGVLVLDNQ-NNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERG 180

Query: 138 EV----FPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANI 192
           E+       +  +  ++  +   G+WMDIG+P + I   +  LD                
Sbjct: 181 ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALD---------------- 224

Query: 193 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW 252
              V       + +   I   V +     ++SG  +                     IG 
Sbjct: 225 -NLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYI----------------EGPVYIGK 267

Query: 253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSIL 296
            S +G  + +   TIL E   +         V     E+K S++
Sbjct: 268 GSEIGPNSYLRPYTILVEKNKIGA------SV-----EVKESVI 300

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254

 Score =  121 bits (305), Expect = 4e-33
 Identities = 18/183 (9%), Positives = 57/183 (31%), Gaps = 26/183 (14%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
               + K G++++ + +         L L +++L +     + +   + + +        
Sbjct: 85  FDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELANS----YVIDADNYLFK-------N 133

Query: 65  FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
             +     ++      ++ +    +V  +   KV+  +   K     +I +G+   +   
Sbjct: 134 MFRNDLTRSTYFSVYREDCTNEWFLVYGDD-YKVQDIIVDSK---AGRILSGVSFWDAPT 189

Query: 125 LDRI----------ELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGLRL 173
            ++I                    +      E  ++   L G    +I   +DY     +
Sbjct: 190 AEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLEEI 249

Query: 174 YLD 176
             +
Sbjct: 250 LKN 252

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259

 Score = 99.4 bits (248), Expect = 7e-25
 Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 15  KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEAS 74
            +      +   T G L    + +     E F     D +++      I+FHKAHG +A+
Sbjct: 96  NVTLVDTGDSSMTGGRLKRVAEYV--KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153

Query: 75  IMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS 134
           +  T    P ++G + ++   G+V  F EKPK   G  IN G ++LNP+V+D I+   T+
Sbjct: 154 LTATF--PPGRFGALDIQA--GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATT 208

Query: 135 IEKEVFPKIALEGKLFAMVLPGFW--MDIGQPRDYITGL 171
            E+E    +A +G+L A   PGFW  MD  + + Y+ GL
Sbjct: 209 WEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGL 247

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420

 Score = 81.9 bits (203), Expect = 9e-18
 Identities = 56/274 (20%), Positives = 98/274 (35%), Gaps = 52/274 (18%)

Query: 59  FAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 115
           +  M++ H   G + +I   +V   E + +GV+ + E   ++  F+EKP    G   N  
Sbjct: 142 YEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNE-KDEIIDFIEKPADPPGIPGNEG 200

Query: 116 ------GIYLLNPAVL----DRIELRPTSIE---KEVFPKIALEGKLFA----------- 151
                 GIY+ +   L     R    PTS     K++ P I   GK  A           
Sbjct: 201 FALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSD 260

Query: 152 MVLPGFWMDIGQPRDY----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE- 200
                +W D+G    Y          +  L +Y  S    +  ++   A  V +      
Sbjct: 261 FEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRG 320

Query: 201 ---SAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 253
              S+ +   C+I G  +    +  G    S  RL    V+  V+I +HA +S+ +I   
Sbjct: 321 SAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHG 380

Query: 254 STVGQWARVENMTILGEDVHVCDEIY-SNGGVVL 286
             +      E + +  +          +  G+ L
Sbjct: 381 VVIP-----EGLIVGEDPELDAKRFRRTESGICL 409

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Length = 456

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 59/284 (20%), Positives = 108/284 (38%), Gaps = 47/284 (16%)

Query: 22  TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTK 79
           TE LGTA  +  A     D+  E   VL  D   I++    ++IE    +G   +++   
Sbjct: 77  TEQLGTAHAVQQAAPFFKDN--ENIVVLYGDAPLITKETLEKLIEAKPENG--IALLTVN 132

Query: 80  VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGIYLLNPAVLDRI--ELRPT 133
           +D P+ YG ++ E   G V   VE      +     ++N G+ + + A   +    +   
Sbjct: 133 LDNPTGYGRIIREN--GNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNN 190

Query: 134 SIEKE-----VFPKIALEGKLFAMVLPGFWMDIGQPRDY--ITGL--RLYLDSL------ 178
           + + E     +      +      V         Q  D   + G   RL L +L      
Sbjct: 191 NAQGEYYLTDLIALANQDNCQVVAV---------QATDVMEVEGANNRLQLAALERYFQN 241

Query: 179 RKKSSLKLATGANIV--GNVLVHESAQIGEGCLIGP------DVAVGPGCVVESGVRLSR 230
           ++ S L L  G  I       +  + + G+   I        +V +G    + +G  L  
Sbjct: 242 KQASKL-LLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKN 300

Query: 231 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
             +   V IK ++ +  SI+G  + +G ++R+     L  + HV
Sbjct: 301 VVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHV 344

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 50/313 (15%), Positives = 113/313 (36%), Gaps = 82/313 (26%)

Query: 59  FAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINA- 115
           + + I+ H+    + ++    +D    + +G++ ++E  G++ +F EKP+      +   
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVD 210

Query: 116 --------------------GIYLLNPAVL-DRIELRPTSIE---KEVFPKIALEG-KLF 150
                               GIY+++  V+ + +  +         EV P     G ++ 
Sbjct: 211 TTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQ 270

Query: 151 AMVLPGFWMDIGQPRDY-----------ITGLRLYLDSLRKKSSLKLATGANIVGNVLVH 199
           A +  G+W DIG    +           +     Y  S    +  +    + ++   +  
Sbjct: 271 AYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTD 330

Query: 200 ESAQIGEGCLI-GPDVA---VGPGCVVESGVRLSRCTVMRG------------------- 236
             + IGEGC+I    +    VG    +  G  +    +M                     
Sbjct: 331 --SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVP 388

Query: 237 VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE-------IYSNGGVVLPHK 289
           + I K+  I  +II  ++ +G     +N+ I+ +D +V +           +G V +   
Sbjct: 389 IGIGKNCHIKRAIIDKNARIG-----DNVKIINKD-NVQEAARETDGYFIKSGIVTVI-- 440

Query: 290 EIKSSILKPEIVM 302
             K +++   I++
Sbjct: 441 --KDALIPSGIII 451

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 20/123 (16%)

Query: 9   EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP--FAEMIEFH 66
            A    K I   +T   G    L            EPF V++SD+I+        ++++ 
Sbjct: 62  SAYKDYKNIVVIDTSGKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYF 117

Query: 67  KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD 126
                       K   P    + VM       ++    P +     + A I +++P    
Sbjct: 118 YCI---------KAKTPDVEALAVMIP-----KEKYPNPSIDFNGLVPADINVVSPKHGY 163

Query: 127 RIE 129
           + E
Sbjct: 164 QKE 166

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEM 62
           + E    LG  I  + +  PLGT   +      L DD      V + D   +     A++
Sbjct: 73  VGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADL 132

Query: 63  IEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGIY 118
           I  H+A     +++ T +D+P  YG ++  +   +V   VE     P      ++NAG+Y
Sbjct: 133 IATHRAVSAAVTVLTTTLDDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVNAGVY 191

Query: 119 LLNPAVL 125
             + A L
Sbjct: 192 AFDIAAL 198

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Length = 501

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 207 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 266
           G  +     +G  CVV     L+   V  G  +      SSS IG  + VG +  +   T
Sbjct: 295 GTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVV-RTHGSSSSIGDGAAVGPFTYLRPGT 353

Query: 267 ILGEDVHV 274
            LG D  +
Sbjct: 354 ALGADGKL 361

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL---------------S 229
            +  G  I  NV + ++  I  GC+I  +V +  G  + +   L                
Sbjct: 10  IIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKH 69

Query: 230 RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286
              +     I+    I   +IIG +   G    +   T +G +V +         V +
Sbjct: 70  PLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYI 127

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A* Length = 273

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC 244
            +    NI  NV V E + I +   + P        VV +         + GV I+  A 
Sbjct: 126 YIGNYVNIHSNVFVGEKSIIKDFVWLFP-------HVVLTNDPTPPSNELLGVTIELFAV 178

Query: 245 I-SSSIIGWHSTVGQWARVENMTILGEDV 272
           I + S++     + + A V    ++ +DV
Sbjct: 179 IAARSVVLPGIHINEDALVGAGAVVTKDV 207

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 57.1 bits (139), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 195 NVLVHESAQIGEGCLIGP------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 248
              +      G    I         V +G    + +G  L  C +     I  +  +  +
Sbjct: 262 RFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCVIGDDSEISPYTVLEDA 321

Query: 249 IIGWHSTVGQWARVENMTILGEDVHV 274
            +  + TVG +AR+     L E  HV
Sbjct: 322 RLDANCTVGPFARLRPGAELAEGAHV 347

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Length = 459

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 22  TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTK 79
            E LGT   +  A     DD  E   +L  DV  IS      ++      G    ++  K
Sbjct: 80  AEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRLLAAKPEGG--IGLLTVK 135

Query: 80  VDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGIYLLNPAVL 125
           +D PS YG +V E   G V   VE           N+IN GI + N   L
Sbjct: 136 LDNPSGYGRIVREN--GDVVGIVEHKDASDAQREINEINTGILVANGRDL 183

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 240
           ++ KL    +I  N ++    ++G+  +IG    VG    + +G RL +  T+   ++I 
Sbjct: 108 ATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIG 167

Query: 241 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 281
           ++  I S +++G     + +  G W ++  +   I+G+ V    EI + 
Sbjct: 168 QNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRV----EIGAC 212

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli} Length = 341

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 256
           +  SA I     +G +V++G   V+ESGV L     +  G  + K++      IG  S +
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNS-----KIGAGSRL 154

Query: 257 GQWARVENMTILGEDVHV 274
                + +   +G++  +
Sbjct: 155 WANVTIYHEIQIGQNCLI 172

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 9   EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFH 66
           E  L  +     ++E LGT   + +    L   +G    V+  D   I+      +I+FH
Sbjct: 69  EEVLAGQTEFVTQSEQLGTGHAVMMTEPILEGLSG-HTLVIAGDTPLITGESLKNLIDFH 127

Query: 67  KAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE----KPKLFVGNKINAGIYLLNP 122
             H   A+I+  + D P  YG +V  ++  +V + VE            +IN G Y+ + 
Sbjct: 128 INHKNVATILTAETDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFDN 186

Query: 123 AVL 125
             L
Sbjct: 187 ERL 189

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Length = 468

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 207 GCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 266
             ++     +G   V+ +G  +   T+  G  I  ++ I  S +    TVG +A +   +
Sbjct: 286 NVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI-TNSMIEESSVADGVTVGPYAHIRPNS 344

Query: 267 ILGEDVHV 274
            LG  VH+
Sbjct: 345 SLGAQVHI 352

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 13/109 (11%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 240
           +  ++   A++    ++   A+IG G  IG    +G   V+  G  L  R T+   V I 
Sbjct: 130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIG 189

Query: 241 KHACI-SSSIIG-----WHSTVGQWARVENM--TILGEDVHVCDEIYSN 281
               I S ++IG     + +  G W ++  +    +G+DV    EI +N
Sbjct: 190 ARVSIQSGAVIGGEGFGFANEKGVWQKIAQIGGVTIGDDV----EIGAN 234

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa} Length = 372

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 256
           +H +A +     + P  +VG   V+ESG R+ +  ++     I   +     +IG    +
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVIGARS-----VIGEGGWL 176

Query: 257 GQWARVENMTILGEDVHV 274
                + +   +G  V +
Sbjct: 177 APRVTLYHDVTIGARVSI 194

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 14/110 (12%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK 240
            +  +     I    +V + A +G  C IG    +G    V     +  R  +   V I 
Sbjct: 135 PTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIG 194

Query: 241 KHACI-SSSIIG------WHSTVGQWARVENM--TILGEDVHVCDEIYSN 281
           K   I   ++IG        S  GQ   ++++   I+ +DV    EI +N
Sbjct: 195 KRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIEDDV----EIGAN 240

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Length = 374

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWHSTV 256
           +H +A I    +I   V + P  VV     + S C +  G  I  ++      +G HS +
Sbjct: 127 IHPTAVIHPTAIIEDHVCIEPYAVVCQHAHVGSACHIGSGSVIGAYS-----TVGEHSYI 181

Query: 257 GQWARVENMTILGEDVHV 274
                +     +G+ V +
Sbjct: 182 HPRVVIRERVSIGKRVII 199

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 24/111 (21%)

Query: 34  ARDKLIDDTGEPFFVLNSDVI--SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKYGV 88
           AR  ++ D  EPF VL  D     +     +M++ +   GG   I   +V  D+  +YG+
Sbjct: 126 AR-DIVGD--EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGI 181

Query: 89  VVMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 129
           +      G   +V+  VEKP        L V      G Y+L P V+  +E
Sbjct: 182 ITPGTQDGVLTEVKGLVEKPAPGTAPSNLSV-----IGRYILQPEVMRILE 227

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 30/117 (25%)

Query: 34  ARDKLIDDTGEPFFVLNSDVI--------SEYPFAEMIEFHKAHGGEASIMVTKVDEPSK 85
           A   ++ D  EP  V+  DVI        S+   AEMI      G  + IMV  V + + 
Sbjct: 122 AH-PVVGD--EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADVTA 177

Query: 86  YGVV------VMEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 129
           YGVV      +    +  +   VEKPK       L +      G Y+L+  +   + 
Sbjct: 178 YGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAI-----VGRYVLSADIWPLLA 229

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 26/113 (23%)

Query: 34  ARDKLIDDTGEPFFVLNSDVI----SEYP-FAEMIEFHKAHGGEASIMVTKV--DEPSKY 86
               LI +  EPF V+ +D +           +M   ++ +     + + +V  +E SKY
Sbjct: 115 GE-ALIGN--EPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSI-VAIEEVALEEVSKY 170

Query: 87  GVVVMEESTG---KVEKFVEKPK-------LFVGNKINAGIYLLNPAVLDRIE 129
           GV+  E       +++  VEKP        L V      G Y+L P + + + 
Sbjct: 171 GVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAV-----IGRYILTPDIFEILS 218

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 11/109 (10%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI-------S 246
              +H +A + EG  IG    +     +  G  +   C++ + V +     I       +
Sbjct: 3   MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62

Query: 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 295
           +  +  +  +          +     +    I              +++
Sbjct: 63  NVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATL 111

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A* Length = 192

 Score = 42.3 bits (99), Expect = 6e-05
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHA 243
           ++   + I   V +   A+IGEGC +G +V VG    + + V++ +  +V   V ++   
Sbjct: 17  RIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDV 76

Query: 244 CISSSIIGW----------------HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286
               S++                   + V Q A +     +     +    +   G V+
Sbjct: 77  FCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGATIGRYAFVGAGAVV 135

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 23/123 (18%)

Query: 23  EPLGTAGPLALARDKLIDDTGEPFFV-LNSDVISEYP-FAEMIEFHKAHGGEASIMVTKV 80
           +PLG    + LA   ++DD  +   V L  D++        M +     GG + +   +V
Sbjct: 114 KPLGLGHAVGLAES-VLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEV 171

Query: 81  --DEPSKYGVV-----VMEESTGKVEKFVEKPK-------LFVGNKINAGIYLLNPAVLD 126
              + SKYG+        +    KV+  VEKP        L        G YLL+  + D
Sbjct: 172 SEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAA-----TGRYLLDRKIFD 226

Query: 127 RIE 129
            + 
Sbjct: 227 ALR 229

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334

 Score = 46.0 bits (108), Expect = 6e-06
 Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS- 246
              I     V+  A++  G        +     V     +   C +   V +  HA +  
Sbjct: 201 NVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRG 260

Query: 247 -SSIIGWHSTVGQWARVENMTILGEDVHVCD 276
              ++     +   A ++   ++   V +  
Sbjct: 261 GPILLDDRVLIEGHACIQGEILIERQVEISG 291

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 53/421 (12%), Positives = 110/421 (26%), Gaps = 156/421 (37%)

Query: 3   NFLKEFEAK----LGIKIICSQETEPLGTAGPLALARDKLID---DTGEP----FF--VL 49
            F+  F+ K    +   I+  +E + +  +        +L        E     F   VL
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 50  NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK-FVEKPKLF 108
             +    Y F  M          + +    +++  +     +        K  V + + +
Sbjct: 88  RIN----YKFL-MSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVSRLQPY 137

Query: 109 VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-----K--LFAMVL------- 154
              K+   +           ELRP          + ++G     K  +   V        
Sbjct: 138 --LKLRQALL----------ELRPA-------KNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 155 --PG--FWMDIGQ---PRDYITGL-RLYLD-----SLRKKSSLKLATGANIVGNVLVH-- 199
                 FW+++     P   +  L +L        + R   S  +    + +   L    
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 200 ESAQIGEGCLIGPDV-------AVGPGC-------------VVESGVR------------ 227
           +S       L+  +V       A    C              + +               
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 228 --------LSRCTVMRGVRIKKHACISS----SIIG-----WHSTVGQWARV-------- 262
                   L +    R   + +    ++    SII        +T   W  V        
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 263 -----------------ENMTILGEDVHV---------CDEIYSNGGVVLPHKEIKSSIL 296
                            + +++     H+          D I S+  VV+ +K  K S++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLV 417

Query: 297 K 297
           +
Sbjct: 418 E 418

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SI 249
           +    VL+H SA +    +IG  V+VGP C + S V+L       G ++   + +   + 
Sbjct: 3   SRDSEVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLG-----NGCKLYPSSHVFGNTE 57

Query: 250 IGWHSTVGQWARVENMTILGEDVHVCDEIYS 280
           +G    +   A V +       +   + I  
Sbjct: 58  LGESCVLMTGAVVGDELPGYTFIGCNNIIGH 88

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana} Length = 305

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSII 250
           +VH +A IG+G      C IG  V +G GC +     +   T +    +     +    +
Sbjct: 15  VVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDEL 74

Query: 251 GWHSTVGQWARVENMTILGED 271
             ++ +G    + +  ++G  
Sbjct: 75  PGYTFIGCNNIIGHHAVVGVK 95

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 247
           ++   A++ E        +I  +V++  G ++E  V++   + + +  R  + A I  
Sbjct: 8   IIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVIGV 65

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} PDB: 3i3a_A* 3i3x_A* Length = 259

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 196 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACI 245
           + +H +A I     +   V VGP  ++E  V +     +   V+I   + I
Sbjct: 1   MKIHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEI 51

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
           + ++A I     I   V +G  CV+  GV+L       GV++  +  +       H+ VG
Sbjct: 4   IAKTAIISPKAEINKGVEIGEFCVIGDGVKLD-----EGVKLHNNVTLQG-----HTFVG 53

Query: 258 QWARVENMTILGED 271
           +   +    +LG  
Sbjct: 54  KNTEIFPFAVLGTQ 67

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1 Length = 270

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACI 245
           ++   A+I +G      C+IG  V +  G  + + V L   T + +   I   A +
Sbjct: 9   IISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 247
           ++   AQ+ E        ++G +V +G    + S   +   T +    RI  +A +  
Sbjct: 30  IIEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGEDNRIGHYASVGG 87

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis} Length = 283

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTV 256
           +H +A I  G  +   V VGP  +V S V +          I  H+ I   + IG  + +
Sbjct: 25  IHPTAIIEPGAQLHETVEVGPYAIVGSNVTIG-----ARTTIGSHSVIEGHTTIGEDNRI 79

Query: 257 GQWA 260
           G +A
Sbjct: 80  GHYA 83

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 197 LVHESAQIGEG------CLIGPDVAVGPGCVVESGVRLSRCTVM-RGVRIKKHACISS 247
           ++ E AQ+G+         +  D  +G   V++ G R+   T +    R+  +A +  
Sbjct: 12  VIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGD 69

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} Length = 266

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
           +H SA I EG  +G DV +     V    ++        V IK+ A I S      +T+G
Sbjct: 7   IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIG-----NNVVIKQGARILS-----DTTIG 56

Query: 258 QWARVENMTILGED 271
             +RV +  I+G+ 
Sbjct: 57  DHSRVFSYAIVGDI 70

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A Length = 262

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SII 250
           I  +  VH +A + EG  IG +  +GP C+V   V +       G  +K H  ++  + I
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIG-----EGTVLKSHVVVNGHTKI 56

Query: 251 GWHSTVGQWA 260
           G  + + Q+A
Sbjct: 57  GRDNEIYQFA 66

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIK 240
            S++L  G  ++  V ++  + IG+  +I     V   C + +   L     +  GV + 
Sbjct: 110 PSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVG 169

Query: 241 KHACI-SSSIIGWHSTVGQWARV 262
           + A +   + +    T+G    V
Sbjct: 170 ERAFLGVGARVIPGVTIGADTIV 192

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* Length = 220

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 123 AVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKS 182
           A++D    R   +   V         L    L   ++ IG  R     LR  L    +  
Sbjct: 40  AIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNR-----LRQKLGRKARDH 94

Query: 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKK 241
              L     I  + +V  S ++GEG  +   VA+     +     + +   V    R+  
Sbjct: 95  GFSLVN--AIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGA 152

Query: 242 HACISSS-------IIGWHSTVGQWARVENMTILGEDVHV 274
              +  +        +G  + +G  ARV     +G D  V
Sbjct: 153 ACHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIV 192

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Length = 194

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 180 KKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVR 238
             + ++   G  I+  V+++  A+I +G ++     +   CV+     +S        V+
Sbjct: 86  PSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVK 145

Query: 239 IKKHACI-SSSIIGWHSTVGQWARV 262
           I K+  +  +S +  + ++   + +
Sbjct: 146 IGKNCFLGINSCVLPNLSLADDSIL 170

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A* Length = 240

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG-------- 236
           ++   A I+ N  ++  A IGEG +I  +  +G    V     +    V+ G        
Sbjct: 105 EIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAK 164

Query: 237 -VRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDV 272
            V ++    I ++ ++    TVG+ A V    ++ EDV
Sbjct: 165 PVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDV 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	302
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	100.0
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	100.0
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	100.0
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	100.0
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	100.0
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.97
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.97
3pnn_A	303	Conserved domain protein; structural genomics, PSI	99.88
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	99.88
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	99.87
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.87
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.87
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	99.82
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	99.82
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	99.81
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	99.81
1tzf_A	259	Glucose-1-phosphate cytidylyltransferase; nucleoti	99.8
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.77
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	99.76
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	99.76
4evw_A	255	Nucleoside-diphosphate-sugar pyrophosphorylase; st	99.76
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.72
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.71
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.71
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.71
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.7
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	99.7
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.69
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.67
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.67
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.66
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.66
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.63
3mqg_A	192	Lipopolysaccharides biosynthesis acetyltransferas;	99.63
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.63
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.62
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.62
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.62
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.61
3bfp_A	194	Acetyltransferase; LEFT-handed beta helix, COA bin	99.6
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.6
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.6
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.6
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.59
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.58
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.57
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	99.57
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.57
3r0s_A	266	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.57
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.57
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.56
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.56
3r8y_A	240	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- ac	99.55
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.55
4e6u_A	265	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.55
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.55
2x65_A	336	Mannose-1-phosphate guanylyltransferase; nucleotid	99.55
3hsq_A	259	Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam	99.54
3tk8_A	316	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.54
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	99.53
2qia_A	262	UDP-N-acetylglucosamine acyltransferase; LEFT-hand	99.53
3ixc_A	191	Hexapeptide transferase family protein; niaid, ssg	99.53
1j2z_A	270	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.53
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.53
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	99.52
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	99.51
1xhd_A	173	Putative acetyltransferase/acyltransferase; struct	99.51
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.51
3fs8_A	273	QDTC; acetyltransferase, natural product, deoxysug	99.51
3gos_A	276	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.51
3eg4_A	304	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- su	99.5
2cu2_A	337	Putative mannose-1-phosphate guanylyl transferase;	99.49
2ggo_A	401	401AA long hypothetical glucose-1-phosphate thymid	99.49
3tv0_A	194	Dynactin subunit 6; LEFT-handed beta-helix, ARP11,	99.49
3vbi_A	205	ANTD, galactoside O-acetyltransferase; anthrose, a	99.48
3t57_A	305	UDP-N-acetylglucosamine O-acyltransferase domain-	99.48
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.47
3r3r_A	187	Ferripyochelin binding protein; structural genomic	99.46
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.46
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	99.45
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.45
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	99.45
3r1w_A	189	Carbonic anhydrase; beta-helix, lyase; 1.73A {Unid	99.44
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	99.44
3kwd_A	213	Carbon dioxide concentrating mechanism protein; LE	99.44
1v3w_A	173	Ferripyochelin binding protein; beta-helix, carbon	99.43
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.43
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.43
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	99.43
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.43
4eqy_A	283	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam	99.42
2icy_A	469	Probable UTP-glucose-1-phosphate uridylyltransfera	99.42
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.41
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	99.41
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.41
2iu8_A	374	LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	99.41
1qre_A	247	Carbonic anhydrase; beta-helix, lyase; 1.46A {Meth	99.41
3c8v_A	496	Putative acetyltransferase; YP_390128.1, structura	99.39
2pig_A	334	Putative transferase; SCR6, NESG, YDCK, structural	99.39
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.37
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.36
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.35
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.35
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.34
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	99.34
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.33
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.3
3hjj_A	190	Maltose O-acetyltransferase; LEFT-handed beta-heli	99.3
3r5d_A	347	Tetrahydrodipicolinate N-succinyletransferase; 1.8	99.29
3fsy_A	332	Tetrahydrodipicolinate N-succinyltransferase; beta	99.29
1jyk_A	254	LICC protein, CTP:phosphocholine cytidylytransfera	99.28
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	99.28
3jqy_B	252	NEUO, polysialic acid O-acetyltransferase; LEFT-ha	99.27
3q1x_A	313	Serine acetyltransferase; cysteine biosynthesis, L	99.26
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.25
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	99.25
3nz2_A	195	Hexapeptide-repeat containing-acetyltransferase; s	99.24
3ftt_A	199	Putative acetyltransferase sacol2570; galactoside	99.23
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.22
2wlg_A	215	Polysialic acid O-acetyltransferase; enzyme, LEFT-	99.21
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	99.2
1krr_A	203	Galactoside O-acetyltransferase; LEFT-handed paral	99.19
1ocx_A	182	Maltose O-acetyltransferase; LEFT-handed parallel	99.19
2rij_A	387	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate	99.18
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	99.17
1ssq_A	267	SAT, serine acetyltransferase; LEFT-handed paralle	99.16
3mc4_A	287	WW/RSP5/WWP domain:bacterial transferase hexapept	99.16
3f1x_A	310	Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9	99.16
3srt_A	188	Maltose O-acetyltransferase; structural genomics,	99.14
1t3d_A	289	SAT, serine acetyltransferase; LEFT-handed-beta-he	99.13
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	99.12
2p2o_A	185	Maltose transacetylase; GK1921, GKA001001921.1, ge	99.12
3brk_X	420	Glucose-1-phosphate adenylyltransferase; ADP-gluco	99.07
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	99.05
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	99.05
4hur_A	220	Virginiamycin A acetyltransferase; structural geno	99.01
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.99
2i5k_A	488	UTP--glucose-1-phosphate uridylyltransferase; LEFT	98.9
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.84
3eev_A	212	Chloramphenicol acetyltransferase; beta-helix, str	98.82
4e8l_A	219	Virginiamycin A acetyltransferase; structural geno	98.74
1mr7_A	209	Streptogramin A acetyltransferase; LEFT-handed par	98.72
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	98.7
1jv1_A	505	Glcnac1P uridyltransferase isoform 1: AGX1; nucleo	98.7
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	98.66
1xat_A	212	Xenobiotic acetyltransferase; chloramphenicol, LEF	98.62
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	98.42
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	98.35
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	98.13
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	97.93
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	97.83
2oeg_A	505	UTP-glucose-1-phosphate uridylyltransferase 2, put	97.81
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	97.74
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	97.63
3oc9_A	405	UDP-N-acetylglucosamine pyrophosphorylase; structu	97.61
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	97.35
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	97.3
2yqc_A	486	UDP-N-acetylglucosamine pyrophosphorylase; uridine	97.23
2px7_A	236	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	97.19
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	97.17
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	97.08
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	96.79
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	96.24
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	95.26
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	94.95
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	94.42
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	90.82
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	84.24

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=100.00  E-value=3.9e-35  Score=271.95  Aligned_cols=264  Identities=19%  Similarity=0.307  Sum_probs=204.1

Q ss_pred             CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEE
Q 022113           24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKF  101 (302)
Q Consensus        24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~  101 (302)
                      ++||+++|+.+++++.....++|++++||++++.++.++++.|+++++++|+++.+.+  ++..||++.+|+ +++++.|
T Consensus       117 ~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~-~~~v~~~  195 (451)
T 1yp2_A          117 FQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDE-EGRIIEF  195 (451)
T ss_dssp             CCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECT-TSBEEEE
T ss_pred             ccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECC-CCCEEEE
Confidence            5899999999999885322378999999999999999999999998889998888764  567899999985 7899999


Q ss_pred             EecCCCC---------------------CCCeEEEEEEEeCHhhH-hhccC---CCCCccccchHHHHhc-CcEEEEEec
Q 022113          102 VEKPKLF---------------------VGNKINAGIYLLNPAVL-DRIEL---RPTSIEKEVFPKIALE-GKLFAMVLP  155 (302)
Q Consensus       102 ~ekp~~~---------------------~~~~~~~Giy~~~~~~l-~~l~~---~~~~~~~~~~~~l~~~-~~v~~~~~~  155 (302)
                      .|||...                     ...++++|+|+|++++| +.++.   ...++..++++.++++ .++.++.++
T Consensus       196 ~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~  275 (451)
T 1yp2_A          196 AEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYD  275 (451)
T ss_dssp             EESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECC
T ss_pred             EECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHHHHHhcCCceEEEEeC
Confidence            9999632                     24689999999999987 44443   2234555778887776 689999999


Q ss_pred             CeeEecCChHHHHHHHHHHHHhhcc-----cc------ccccccCceEecceEEcCCcEECCCCEECC----CcEECCCC
Q 022113          156 GFWMDIGQPRDYITGLRLYLDSLRK-----KS------SLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGC  220 (302)
Q Consensus       156 g~~~digt~~~~~~a~~~~l~~~~~-----~~------~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~  220 (302)
                      ++|.|+++|++|.++++.+++....     ..      .+.+.+++.+ +++.| .++.||++|.|++    +++||++|
T Consensus       276 ~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~~~i~~~~Ig~~~  353 (451)
T 1yp2_A          276 GYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKNCKIHHSVVGLRS  353 (451)
T ss_dssp             SCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEEEEEESCEECTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccchhccCCCCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcceEEeccEECCCC
Confidence            9999999999999998876543311     01      1223333333 22333 3455566665554    88999999


Q ss_pred             EECCCcEEeceEEccC-------------------CEECCCcEEeccEECCCCEECCCcEEccCc------EECCCcEEC
Q 022113          221 VVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHSTVGQWARVENMT------ILGEDVHVC  275 (302)
Q Consensus       221 ~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~------~i~~~~~v~  275 (302)
                      .||++|.|.++++..+                   +.||+++.|++++|+++|+||+++.|.+++      .||+++.||
T Consensus       354 ~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~ig~~~~ig  433 (451)
T 1yp2_A          354 CISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIK  433 (451)
T ss_dssp             EECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECTTCEECCSSCCSCEEEGGGTEEEE
T ss_pred             EECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEECCCCEEeCCcccccCceeCCCEEEc
Confidence            9999999998888877                   999999999999999999999999998653      567777777


Q ss_pred             Cce-EEcCCeEecCcc
Q 022113          276 DEI-YSNGGVVLPHKE  290 (302)
Q Consensus       276 ~~~-~v~~~~v~~~~~  290 (302)
                      +++ .|++++++++..
T Consensus       434 ~~~v~Ig~~a~i~ags  449 (451)
T 1yp2_A          434 SGIVTVIKDALIPSGI  449 (451)
T ss_dssp             TTEEEECTTCEECTTC
T ss_pred             CCEEEECCCcEECCCc
Confidence            764 467777776654

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=100.00  E-value=3.6e-35  Score=269.78  Aligned_cols=257  Identities=20%  Similarity=0.292  Sum_probs=207.1

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--CCCCCcceEEEeCCCCcEEEEE
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFV  102 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v~~~~  102 (302)
                      +||+++|+.|++++.....++|++++||++++.++.++++.|+++++++++++.+.  +++..||++.+++ +++++.|.
T Consensus       108 ~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~-~g~v~~~~  186 (420)
T 3brk_X          108 EGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNE-KDEIIDFI  186 (420)
T ss_dssp             CCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECT-TSBEEEEE
T ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECC-CCcEEEeE
Confidence            89999999999988531126899999999999999999999998888899888875  4667899999886 78999999


Q ss_pred             ecCCCCC-------CCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhcCcEEEEEe-----------cCe
Q 022113          103 EKPKLFV-------GNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEGKLFAMVL-----------PGF  157 (302)
Q Consensus       103 ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~~~v~~~~~-----------~g~  157 (302)
                      |||....       ..++++|+|+|++++| +.++..      ..++..++++.+++++++.++.+           +++
T Consensus       187 ekp~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~v~~~~~~~~~~~~~~~~~~~  266 (420)
T 3brk_X          187 EKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPY  266 (420)
T ss_dssp             ESCSSCCCBTTBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSCEEEEEHHHHBCCCTTCSSCC
T ss_pred             eCCCccccccccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCcEEEEEeccccccccccCCCE
Confidence            9986543       5789999999999987 455431      22344677888888889999999           889


Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECC-----CCEECCCcEECCCCEECCCcEEeceE
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGE-----GCLIGPDVAVGPGCVVESGVRLSRCT  232 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~-----~~~i~~~~~ig~~~~i~~~~~i~~~~  232 (302)
                      |.|+++|++|.+++..+++....  ...+.+++.+.+.+.++|.+.|++     ++.+ .++.||++|.| .++.|.+|+
T Consensus       267 ~~dI~t~~d~~~a~~~ll~~~~~--~~~~~~~~~i~~~~~i~~~~~i~~~~~~~~~~i-~~~~ig~~~~I-~~~~i~~~~  342 (420)
T 3brk_X          267 WRDVGTIDAYWQANIDLTDVVPD--LDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSA-VSSVVSGDCII-SGAALNRSL  342 (420)
T ss_dssp             EECCCSHHHHHHHHHHTTSSSCS--SCTTCCSSCCCCCCCCCCCCEEECBCSSCBCEE-ESCEECSSCEE-ESCEEESCE
T ss_pred             EEECCCHHHHHHHHHHHhCCCch--hhcCCCCCceeeccccCCCcEEecccccCCcEe-cCCEECCCCEE-cCCEEeCcE
Confidence            99999999999998876543211  112334445555666667777766     7777 69999999999 899999999


Q ss_pred             EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      |+++|.|+++|.|.+|+|++++.|++++.|.+ ++||+++.|++++++..+...|
T Consensus       343 ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~-~~ig~~~~i~~~~~i~~~~~~~  396 (420)
T 3brk_X          343 LFTGVRANSYSRLENAVVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELD  396 (420)
T ss_dssp             ECTTCEECTTCEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEESSCHHHH
T ss_pred             EcCCCEECCCCEEcceEEcCCCEECCCCEEec-eEECCCCEECCCCEEeCCCCCC
Confidence            99999999999999999999999999999965 9999999999999998766555

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=100.00  E-value=5.3e-33  Score=260.68  Aligned_cols=260  Identities=18%  Similarity=0.258  Sum_probs=177.0

Q ss_pred             hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEe
Q 022113            2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      ++|+++++++++.+++|+.|++++||||||++|++++.++..+++++++||. +.+ ..+.++++.|++.++++++++++
T Consensus        70 ~~~~~~~~~~~~~~i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~  149 (501)
T 3st8_A           70 APLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTT  149 (501)
T ss_dssp             HHHHHHHHHHHTSCCEEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHhcCCcEEEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeec
Confidence            5778887888999999999999999999999999999765557899999998 444 45899999999999999999999


Q ss_pred             CCCCCCcceEEEeCCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHhhccC--CCCCccccch-----HHHHhc-C
Q 022113           80 VDEPSKYGVVVMEESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLDRIEL--RPTSIEKEVF-----PKIALE-G  147 (302)
Q Consensus        80 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~--~~~~~~~~~~-----~~l~~~-~  147 (302)
                      .++|..||.+..++ +++++.|.|||...    ..+++++|+|+|+++.|..+..  .......+++     ..+... .
T Consensus       150 ~~dp~~yG~i~~~~-~g~v~~ivEk~~~~~~~~~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~  228 (501)
T 3st8_A          150 LDDPFGYGRILRTQ-DHEVMAIVEQTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQ  228 (501)
T ss_dssp             CSCCTTSCEEEECT-TCCEEEEECGGGCCHHHHHCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTC
T ss_pred             cCCchhcccccccc-ceeEEeeccccCCChhhccceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCc
Confidence            99999999999986 89999999997654    3578999999999988865532  1222233433     333333 4


Q ss_pred             cEEEEEecCeeE--ecCChHHHHHHHHHHHHhhcc-----------------ccccccccCceEec------ceEEcC--
Q 022113          148 KLFAMVLPGFWM--DIGQPRDYITGLRLYLDSLRK-----------------KSSLKLATGANIVG------NVLVHE--  200 (302)
Q Consensus       148 ~v~~~~~~g~~~--digt~~~~~~a~~~~l~~~~~-----------------~~~~~~~~~~~i~~------~~~i~~--  200 (302)
                      .+..+..+.+|.  .+++...+.++...+..+...                 .....+.+++.|.+      .+.++.  
T Consensus       229 ~v~~~~~~~~~~~~g~n~~~~l~~~~~~~~~r~~~~~~~~gv~~~dp~~~~i~~dv~IG~dv~I~~~v~i~g~~~Ig~~~  308 (501)
T 3st8_A          229 TVHASHVDDSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGRC  308 (501)
T ss_dssp             CEEEEECSSGGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEECTTCEECTTCEECSSEEEETTCEECTTC
T ss_pred             eEEEEeccchhhhcccccHHHHHHHHHHhhhhhhhhhcccCceeeeeccccccCceEECCcceecceeeecCccccccce
Confidence            566676666654  445555555544333221100                 01112222222222      222222  


Q ss_pred             -------------------------------CcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccE
Q 022113          201 -------------------------------SAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI  249 (302)
Q Consensus       201 -------------------------------~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~  249 (302)
                                                     ++.+++.+.+++++.|++++.||.++.+.+|+|++++.|++.+++++++
T Consensus       309 ~I~~~~~i~~~~i~~~~~i~~~~i~~~~ig~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~  388 (501)
T 3st8_A          309 VVGPDTTLTDVAVGDGASVVRTHGSSSSIGDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDAD  388 (501)
T ss_dssp             EECSSCEEEEEEECTTCEECSEEEEEEEECTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEE
T ss_pred             EEeeceeecCceEecCCEEEeecccccccccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCce
Confidence                                           2223333444445555566666666666677777777777777777777


Q ss_pred             ECCCCEECCCcEE
Q 022113          250 IGWHSTVGQWARV  262 (302)
Q Consensus       250 i~~~~~i~~~~~i  262 (302)
                      ||++|.||+++.+
T Consensus       389 Ig~~v~IG~g~i~  401 (501)
T 3st8_A          389 IGEYSNIGASSVF  401 (501)
T ss_dssp             ECSSCEECTTCEE
T ss_pred             EcCCCEECCCEEE
Confidence            7777777776544

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=100.00  E-value=7.2e-33  Score=253.00  Aligned_cols=262  Identities=22%  Similarity=0.385  Sum_probs=199.3

Q ss_pred             EEEEEecCC-CCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           15 KIICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        15 ~i~~~~~~~-~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      ++.++.+++ ++|++++++.+++   .   ++|+++.+|+++.  .+++++++     ..+.++++.+.+++..|+.+..
T Consensus        67 ~i~~~~~~~~~~g~~~~l~~~~~---~---~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~~~~~~~v~~  135 (401)
T 2ggo_A           67 EISIVTQKDDIKGTGAAILSAKF---N---DEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSNPKDYGVLVL  135 (401)
T ss_dssp             TCEEEECCTTCCBSTTTGGGCCC---S---SEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSCCSSSCEEEE
T ss_pred             cEEEEeCCCCCCChHHHHHHhcc---C---CCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCCCcceeEEEE
Confidence            456777777 8999999998876   2   6899999999765  55776665     3567888888888888999988


Q ss_pred             eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC------CCccccchHHHHhcCcEEEEEecCeeEecCChH
Q 022113           92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP------TSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPR  165 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~------~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~  165 (302)
                      ++ ++++..|.|||..+...++++|+|+|++++|+.++...      ..+ .++++.+....++..+..+++|.|++||+
T Consensus       136 ~~-~g~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~~dI~t~e  213 (401)
T 2ggo_A          136 DN-QNNLSKIIEKPEIPPSNLINAGIYKLNSDIFTYLDKISISERGELEL-TDAINLMAKDHRVKVIEYEGYWMDIGKPW  213 (401)
T ss_dssp             CT-TSSEEEEECSCSSCSCSEEEEEEEEEETHHHHHHHHSCCCSSSCBCH-HHHHHHHHHHSCEEEEECCSCEEECCSHH
T ss_pred             CC-CCeEEEEEECCCCCCCcEEEEEEEEEcHHHHHHhhhcCcCCCCceEH-HHHHHHHHCCCcEEEEEecceEEcCCCHH
Confidence            75 68999999999777778999999999999998774221      112 34455552235888888889999999999


Q ss_pred             HHHHHHHHHHHhhc-cc------------------cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCc
Q 022113          166 DYITGLRLYLDSLR-KK------------------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGV  226 (302)
Q Consensus       166 ~~~~a~~~~l~~~~-~~------------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~  226 (302)
                      +|.+++..++.... ..                  ..+.+.+++.|.+++.|++++.|+++|.|+++++||++|.|++++
T Consensus       214 dl~~a~~~l~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~  293 (401)
T 2ggo_A          214 NIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASV  293 (401)
T ss_dssp             HHHHHHHHHHHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETC
T ss_pred             HHHHHHHHHHHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCC
Confidence            99999988776533 11                  112233445555666667777777777777778888888888888


Q ss_pred             EEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc------------------------cCcEECCCcEECCceEEcC
Q 022113          227 RLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE------------------------NMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       227 ~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~------------------------~~~~i~~~~~v~~~~~v~~  282 (302)
                      .|.+++|++++.|++++.+++++||++++|++++.|.                        .+++||++|.||++++|.+
T Consensus       294 ~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~v~Ig~~~~Ig~~~~I~~  373 (401)
T 2ggo_A          294 EVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILP  373 (401)
T ss_dssp             EEESEEECTTCEEEESCEEESCEECTTCEECTTCEECCSCTTCSCCEEEETTEEEECSCSSCCCEECTTCEECTTCEECT
T ss_pred             EEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcCcccCCCceeEEECCceEEecccccCcEECCCeEECCCcEEcC
Confidence            8888899999999999999899999999999988886                        2677777777777776666


Q ss_pred             CeEecCc
Q 022113          283 GVVLPHK  289 (302)
Q Consensus       283 ~~v~~~~  289 (302)
                      ++.++.+
T Consensus       374 gv~Ig~~  380 (401)
T 2ggo_A          374 GVKIGAY  380 (401)
T ss_dssp             TCEECTT
T ss_pred             CcEECCC
Confidence            6555443

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=100.00  E-value=2.9e-31  Score=247.09  Aligned_cols=262  Identities=21%  Similarity=0.278  Sum_probs=198.4

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.|+.+++++||+++++.+++++... .+.|++++||+  +.+.+++++++.|++.++++++++.+.+++..||.+.+|
T Consensus        75 ~i~~v~~~~~~G~~~sl~~a~~~~~~~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d  153 (468)
T 1hm9_A           75 QTEFVTQSEQLGTGHAVMMTEPILEGL-SGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRN  153 (468)
T ss_dssp             SSEEEECSSCCCHHHHHHTTHHHHTTC-CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEEC
T ss_pred             CcEEEeCCccCChHHHHHHHHHHhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEEC
Confidence            456777888899999999999998521 37899999999  557789999999998888899999988888899999988


Q ss_pred             CCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhH-hhccCCC------CCccccchHHHHhc-CcEEEEEecCeeEe
Q 022113           93 ESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVL-DRIELRP------TSIEKEVFPKIALE-GKLFAMVLPGFWMD  160 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l-~~l~~~~------~~~~~~~~~~l~~~-~~v~~~~~~g~~~d  160 (302)
                      + ++++..|.|||..    ....++++|+|+|+++.| +.++...      .....++++.+++. .++.++..+++|.+
T Consensus       154 ~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~  232 (468)
T 1hm9_A          154 D-NAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDES  232 (468)
T ss_dssp             T-TCCEEEEECTTTCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCTTHHHHHHHHHTCCEEEEECSSGGGG
T ss_pred             C-CCCEEEEEECCCCChHHhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEHHHHHHHHHHCCCEEEEEEcCChHHh
Confidence            6 7899999999752    135789999999999844 5554211      12235667777766 48999999999976


Q ss_pred             --cCChHHHHHHHHHHHHhhccc----ccccccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          161 --IGQPRDYITGLRLYLDSLRKK----SSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       161 --igt~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                        +++|++|..++..+.......    ....+++ .+.+.+++.|++++.|++++.|++++.||++|.|++++.|.++.|
T Consensus       233 i~i~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i  312 (468)
T 1hm9_A          233 LGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTI  312 (468)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGCEECTTCEECTTCEECSSCEEESSCEECTTCEECTTCEEESCEE
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEECCCeeEECCCcEECCCCEECCCcEECCCCEECCCCEECCCCEEeccEE
Confidence              559999999887655432210    0111232 456777777777777777787777888888888888888888888


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceE
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIY  279 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~  279 (302)
                      +++|.|+ ++.+.+++|++++.|++++.|.++++||++++|++++.
T Consensus       313 g~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~  357 (468)
T 1hm9_A          313 GAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVE  357 (468)
T ss_dssp             CTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECTTCEEEEEEE
T ss_pred             eCCcEEE-EEEEeccccCCCcEECCceEEecCcEECCccEECCCcE
Confidence            8888887 78887788888888888777776777777776665444

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.97  E-value=1.9e-29  Score=233.98  Aligned_cols=260  Identities=18%  Similarity=0.270  Sum_probs=202.1

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .++|+.+++++||+++++.+++++..  .+.+++++||+  +.+.+++++++.|.+  .+++++..+.+++..||.+..+
T Consensus        70 ~~~~v~~~~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~~  145 (456)
T 2v0h_A           70 QVNWVLQTEQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDNPTGYGRIIRE  145 (456)
T ss_dssp             CCEEEECSCCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSSCTTSCEEEEE
T ss_pred             CcEEEeCCCCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCCCCccceEEEc
Confidence            46677788899999999999998853  37899999999  456779999998865  5788888888888889998887


Q ss_pred             CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccCCC------CCccccchHHHHhc-CcEEEEEecCe--e
Q 022113           93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIELRP------TSIEKEVFPKIALE-GKLFAMVLPGF--W  158 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~------~~~~~~~~~~l~~~-~~v~~~~~~g~--~  158 (302)
                        ++++..|.|+|...    ...++++|+|+|+++.| +.++...      .....++++.+... .++..+..+++  |
T Consensus       146 --~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~~  223 (456)
T 2v0h_A          146 --NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIALANQDNCQVVAVQATDVMEV  223 (456)
T ss_dssp             --TTEEEEEECTTTCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCCCGGGHHHHHHHTTCCEEEEECSCTGGG
T ss_pred             --CCcEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHHHhccccccccEEHHHHHHHHHHcCCEEEEEEeCCcceE
Confidence              68999999987632    34789999999999854 5553211      11224566666665 47888888765  5


Q ss_pred             EecCChHHHHHHHHHHHHhhccc---ccc-cccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113          159 MDIGQPRDYITGLRLYLDSLRKK---SSL-KLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV  233 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~~---~~~-~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i  233 (302)
                      ++++||++|.+++..+.......   ... .+++ .+.+++++.+++++.|+++|.|+++++||++|.|++++.|.++.|
T Consensus       224 ~~I~tpeDl~~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~i  303 (456)
T 2v0h_A          224 EGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLEHGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVI  303 (456)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHTTCEESCGGGEEEEEEEEECSSCEECSSEEEEEEEEECTTCEECTTCEEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHHHHHHHcCCEEECCCccEEcCceEECCCCEEcCCcEEcCCcEECCCCEECCCCEEEeEEE
Confidence            69999999999887655432211   111 1233 567888899999999999999988999999999999999999999


Q ss_pred             ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      +++|.|+++++|.+++||+++.|++++.|.++++||+++.||+++.+
T Consensus       304 g~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~ig~~~~ig~~~~i  350 (456)
T 2v0h_A          304 GNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELAAETHVGNFVEI  350 (456)
T ss_dssp             CTTCEECSSCEEEEEEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred             eCCCEEcCCeEEccCcCCCCcEECCccEECCCCEECCCCEECCCCEE
Confidence            99999999999988889999999988888877777777776665544

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.97  E-value=2.2e-29  Score=233.70  Aligned_cols=261  Identities=21%  Similarity=0.265  Sum_probs=204.6

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      ..+.++.+++.+||+++++.+++++..  .+.+++++||+  +.+.++.++++.|.+  .+++++..+..++..||.+..
T Consensus        72 ~~~~~v~~~~~~g~~~~i~~~~~~~~~--~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~~g~v~~  147 (459)
T 4fce_A           72 PSLNWVLQAEQLGTGHAMQQAAPHFAD--DEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSGYGRIVR  147 (459)
T ss_dssp             ---CEEECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTTSCEEEE
T ss_pred             CCcEEEeCCCCCCcHHHHHHHHHhcCC--CCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCcccEEEe
Confidence            356777788899999999999999863  37899999999  556779999998864  567888888888889999988


Q ss_pred             eCCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhc-CcEEEEEecCee-
Q 022113           92 EESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALE-GKLFAMVLPGFW-  158 (302)
Q Consensus        92 d~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~-~~v~~~~~~g~~-  158 (302)
                      +  ++++..+.|+|..    ....++++|+|+|+++.| +.++..      ......+.+..+.+. .++..+..+++| 
T Consensus       148 ~--~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~  225 (459)
T 4fce_A          148 E--NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPTRLSE  225 (459)
T ss_dssp             E--TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGGG
T ss_pred             C--CCcEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcCCHHH
Confidence            7  6899999998642    245789999999999866 444321      111224455666655 578888888766 


Q ss_pred             -EecCChHHHHHHHHHHHHhhcc-----ccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceE
Q 022113          159 -MDIGQPRDYITGLRLYLDSLRK-----KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCT  232 (302)
Q Consensus       159 -~digt~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~  232 (302)
                       +++++|++|..++..+......     ...-..++...+++++.+++++.|+++|.|.+++.||++|.|++++.|.++.
T Consensus       226 ~~~I~tp~Dl~~ae~~l~~~~~~~l~~~~~~~~~p~~~~~~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~  305 (459)
T 4fce_A          226 VEGVNNRLQLSALERVFQTEQAEKLLLAGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCVLKNCV  305 (459)
T ss_dssp             GCCCSSHHHHHHHHHHHHHHHHHHHHHHTCEESCGGGEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCE
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEEeCcEEECCCcEECCCeeeccceEECCCCEECCCCEEeccE
Confidence             6799999999998766544322     1111123345678888999999999999998899999999999999999999


Q ss_pred             EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |+++|.|+++++|++++||+++.|+++++|.++++|+++++||+++.+
T Consensus       306 Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i  353 (459)
T 4fce_A          306 IGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHVGNFVEI  353 (459)
T ss_dssp             ECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECTTCEEEEEEEE
T ss_pred             ECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECCCcEECCCeEE
Confidence            999999999999999999999999999999888889888888887654

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=99.88  E-value=2.6e-22  Score=176.20  Aligned_cols=170  Identities=17%  Similarity=0.214  Sum_probs=137.4

Q ss_pred             HHHHHhhcCCcEEEEEecC---------------CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113            4 FLKEFEAKLGIKIICSQET---------------EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK   67 (302)
Q Consensus         4 ~~~~~~~~~g~~i~~~~~~---------------~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~   67 (302)
                      ++++ +..|+.+++|+.|+               +++||++||++|++++ +   ++|+|++||++++.+ +++++++|.
T Consensus        66 ~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-~---~~~lV~~gD~l~~~~~~~~l~~~~~  140 (303)
T 3pnn_A           66 KILT-KYEGRIPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-R---EPFAVINADDFYGRNGFEVLARKLM  140 (303)
T ss_dssp             HTHH-HHTTTSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-C---SCEEEEESSCBCCHHHHHHHHHHHH
T ss_pred             HHHH-HhccCCcEEEEecccccccccccccccccccCCcHHHHHHHHHhc-C---CCEEEEECCeecCHHHHHHHHHHHH
Confidence            4444 34568889999987               7899999999999998 3   799999999999887 999999997


Q ss_pred             H---cCCcEEEEEEeCCCC-CCc-----ceEEEeCCCCcEEEEEecCCC-------------------CCCCeEEEEEEE
Q 022113           68 A---HGGEASIMVTKVDEP-SKY-----GVVVMEESTGKVEKFVEKPKL-------------------FVGNKINAGIYL  119 (302)
Q Consensus        68 ~---~~~~~~l~~~~~~~~-~~~-----g~v~~d~~~~~v~~~~ekp~~-------------------~~~~~~~~Giy~  119 (302)
                      +   ++++++++..+.+++ ..|     |++.+|+ +|+|++|.|||..                   ..++++++|+|+
T Consensus       141 ~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~~d~-~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~  219 (303)
T 3pnn_A          141 TLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQVDE-KHLLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWG  219 (303)
T ss_dssp             TTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEEECT-TSBEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEE
T ss_pred             HhccccCceEEEEEECCCccCccCceeeeeEeeCC-CCcEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEE
Confidence            6   567899999988877 777     5788875 7899999999853                   246799999999


Q ss_pred             eCHhhHhhccC--------C-----CCCccccchHHHHhcC--cEEEEEecCeeEecCChHHHHHHHHHHHHhhc
Q 022113          120 LNPAVLDRIEL--------R-----PTSIEKEVFPKIALEG--KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLR  179 (302)
Q Consensus       120 ~~~~~l~~l~~--------~-----~~~~~~~~~~~l~~~~--~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~  179 (302)
                      |++++|+.++.        .     ......+.++.+++++  ++.++.++++|+|+|+|+++.++++.+.+...
T Consensus       220 f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~~~~  294 (303)
T 3pnn_A          220 FTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTE  294 (303)
T ss_dssp             ECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHHHHH
Confidence            99999987752        1     1112245566777776  79999999999999999999999887765443

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=99.88  E-value=1e-21  Score=169.65  Aligned_cols=161  Identities=22%  Similarity=0.311  Sum_probs=139.5

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      ..|++++.|..|++++||+++|+.+++++..   ++|++++||++++.++.++++.|.++++++++++.+.+++..||++
T Consensus        93 ~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~---~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~v  169 (269)
T 4ecm_A           93 QEFGVSFTYRVQDKAGGIAQALGLCEDFVGN---DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPERFGVA  169 (269)
T ss_dssp             GGGTCEEEEEECSSCCCHHHHHHTTHHHHTT---SEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSCGGGSEEE
T ss_pred             cccCceEEEeeCCccCcHHHHHHHHHHhcCC---CcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCCCCCceEE
Confidence            3688999999999999999999999999863   7999999999999999999999998888999999998888999999


Q ss_pred             EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC----c-cccchHHHHhcCcEEEEEecCeeEecCCh
Q 022113           90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS----I-EKEVFPKIALEGKLFAMVLPGFWMDIGQP  164 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~----~-~~~~~~~l~~~~~v~~~~~~g~~~digt~  164 (302)
                      ..+  +++++.|.|||..+...++++|+|+|++++|+.++....+    + ..++++.++.++++.++..+++|.|++||
T Consensus       170 ~~d--~g~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g~v~~~~~~~~~~dIgt~  247 (269)
T 4ecm_A          170 NIQ--NRKIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAGTH  247 (269)
T ss_dssp             EEE--TTEEEEEEESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTTCEEEEECCSCEEECSSH
T ss_pred             EEc--CCEEEEEEECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcCCEEEEEeCCEEEeCCCH
Confidence            988  4899999999977777899999999999999877532211    1 24566777778899999999999999999


Q ss_pred             HHHHHHHHHHH
Q 022113          165 RDYITGLRLYL  175 (302)
Q Consensus       165 ~~~~~a~~~~l  175 (302)
                      ++|.+++..++
T Consensus       248 ~dl~~a~~~l~  258 (269)
T 4ecm_A          248 VSLQRANALAR  258 (269)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=99.87  E-value=3e-21  Score=167.73  Aligned_cols=162  Identities=20%  Similarity=0.293  Sum_probs=134.7

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-----HHHHHHHHHHcCCcEEEEEEeC--CCCC
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-----FAEMIEFHKAHGGEASIMVTKV--DEPS   84 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-----l~~~~~~~~~~~~~~~l~~~~~--~~~~   84 (302)
                      +|.++.|+.|++++||+++|++|++++.+   ++|+|++||++++.+     ++++++.|.++++ .++++...  +++.
T Consensus        93 ~~~~i~~~~~~~~~Gt~~al~~a~~~l~~---~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~  168 (281)
T 3juk_A           93 EKCCFSYVRQKQMKGLGHAILTGEALIGN---EPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVS  168 (281)
T ss_dssp             HHCEEEEEECSSCCCHHHHHHHTHHHHCS---SCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGG
T ss_pred             cCccEEEEecCCCCCcHHHHHHHHHHcCC---CCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcc
Confidence            46889999999999999999999999964   789999999999888     9999999988776 66666665  5678


Q ss_pred             CcceEEEeC-CCC--cEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCCc-----cccchHHHHhcCcEEEEEe
Q 022113           85 KYGVVVMEE-STG--KVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTSI-----EKEVFPKIALEGKLFAMVL  154 (302)
Q Consensus        85 ~~g~v~~d~-~~~--~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~~~v~~~~~  154 (302)
                      .||++..++ .++  ++..|.|||..  ....++++|+|+|++++|+.++....+.     ..++++.++.++++.++.+
T Consensus       169 ~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~  248 (281)
T 3juk_A          169 KYGVIRGEWLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRKRIIAYQF  248 (281)
T ss_dssp             GSEEEEEEEEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCCHHHHHHHHHHHSCCEEEEC
T ss_pred             cCCEEEeccCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCceeHHHHHHHHHhcCCEEEEEe
Confidence            899998873 036  99999999973  4568999999999999998886532221     1456777777789999999


Q ss_pred             cCeeEecCChHHHHHHHHHHHHh
Q 022113          155 PGFWMDIGQPRDYITGLRLYLDS  177 (302)
Q Consensus       155 ~g~~~digt~~~~~~a~~~~l~~  177 (302)
                      +++|.|+|+|++|.+|+..+++.
T Consensus       249 ~g~~~dIgt~~d~~~a~~~l~~~  271 (281)
T 3juk_A          249 KGKRYDCGSVEGYIEASNAYYKK  271 (281)
T ss_dssp             CSEEEETTSHHHHHHHHHHHHHH
T ss_pred             CCeEEcCCCHHHHHHHHHHHHhc
Confidence            99999999999999999877653

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.87  E-value=1.3e-23  Score=189.72  Aligned_cols=196  Identities=17%  Similarity=0.195  Sum_probs=102.4

Q ss_pred             EEEeCCeecCc--CHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCC-CcEEEEEecCCCCC-CCeEEEEEEEeCH
Q 022113           47 FVLNSDVISEY--PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST-GKVEKFVEKPKLFV-GNKINAGIYLLNP  122 (302)
Q Consensus        47 lv~~gD~l~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~-~~v~~~~ekp~~~~-~~~~~~Giy~~~~  122 (302)
                      |+-.+|+++.+  +|++|+++|.     +++..  .+++..+|+..+++++ +++ .|.|||+... ..+.++|+|+|++
T Consensus        14 ~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g--~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~~~~~~aGiyI~~~   85 (374)
T 2iu8_A           14 LVPRGSHMSQSTYSLEQLADFLK-----VEFQG--NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKHLKSSEAGAIIISR   85 (374)
T ss_dssp             -------CCSCCEEHHHHHHHTT-----CEEES--CTTCEECEECCTTTCCTTEE-EECCSSSTHHHHHTCCCSEEEEEH
T ss_pred             cccCccccccCcCcHHHHHHhhC-----CEEEC--CCcceEEEEeccccCCCCeE-EEEeCchhhhhhhcCCcEEEEeCh
Confidence            67789999987  8999999985     34443  4567788998887543 455 9999998642 2467899999999


Q ss_pred             hhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEec--CChHHHHHHHHHHHHhhccccccccccCceEecceEEcC
Q 022113          123 AVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI--GQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHE  200 (302)
Q Consensus       123 ~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~di--gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~  200 (302)
                      ++++.+..    + .+.++ ++.+++..+|.+..+|++.  .++.....      ........+.+.+++.|.+++.|++
T Consensus        86 ~~l~~~~~----~-~~~~p-l~~~~~~~a~~~~~~~~~~~i~~~~~~i~------~~~~i~~~a~Ig~~~~I~~~~~I~~  153 (374)
T 2iu8_A           86 TQFQKYRD----L-NKNFL-ITSESPSLVFQKCLELFITPVDSGFPGIH------PTAVIHPTAIIEDHVCIEPYAVVCQ  153 (374)
T ss_dssp             HHHHTSTT----S-CSCEE-EESSCHHHHHHHHHTTTSCCCCCSCCSBC------TTCEECTTCEECTTCEECTTCEECT
T ss_pred             hHhhhccc----c-ccceE-EEeCCHHHHHHHHHHHhccccccccCccC------CCCEECCCcEECCCCEECCCCEECC
Confidence            98853321    1 23333 3333333333333344443  12110000      0000112233444444445555555


Q ss_pred             CcEECCCCEECCCcEECCCCEECCCcEEe-------ceEEccCCEECCCcEEe---------------------ccEECC
Q 022113          201 SAQIGEGCLIGPDVAVGPGCVVESGVRLS-------RCTVMRGVRIKKHACIS---------------------SSIIGW  252 (302)
Q Consensus       201 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i~---------------------~~~i~~  252 (302)
                      ++.||++|.|+++++|+++|.||++|.|.       ++.|+++|.|+++++|+                     .++|++
T Consensus       154 ~~~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~Ig~~~~~~~~~~~~~~~~i~~~g~v~Ig~  233 (374)
T 2iu8_A          154 HAHVGSACHIGSGSVIGAYSTVGEHSYIHPRVVIRERVSIGKRVIIQPGAVIGSCGFGYVTSAFGQHKHLKHLGKVIIED  233 (374)
T ss_dssp             TCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSEEECTTCEECTTCEEEEECSCEEEETTTEEEECCCCCCEEECT
T ss_pred             CCEECCCCEECCCcEECCCcEECCceeeCCCcEEcccceECCCCEECCCCEECcCCcccccccCCceeEeeeeccEEECC
Confidence            55555555554444444444444444443       45555555555555552                     256666


Q ss_pred             CCEECCCcEE
Q 022113          253 HSTVGQWARV  262 (302)
Q Consensus       253 ~~~i~~~~~i  262 (302)
                      +|+||++++|
T Consensus       234 ~v~IG~~~~I  243 (374)
T 2iu8_A          234 DVEIGANTTI  243 (374)
T ss_dssp             TCEECTTCEE
T ss_pred             CCEECCCcEE
Confidence            6666666655

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.87  E-value=4.9e-23  Score=189.78  Aligned_cols=256  Identities=14%  Similarity=0.189  Sum_probs=181.3

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEe----CCeecCcCHHHHHHHHHHc-----------CCcEEE
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLN----SDVISEYPFAEMIEFHKAH-----------GGEASI   75 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~----gD~l~~~~l~~~~~~~~~~-----------~~~~~l   75 (302)
                      .+|..++++.++.+|+|+++++.+.+.+ .   + ++|++    +|....+++++++..|.++           +...++
T Consensus       110 ~~g~~vt~~~~~~pL~~a~~i~~~d~~~-~---~-t~V~~~~~kpd~~~~~~l~~l~~~h~~~~~g~~~~~~~ig~~~ti  184 (496)
T 3c8v_A          110 RKGQHFVCDGKMIPLHDDEVITIKDSFL-N---K-TLVHSNSHDPESPEEFTIRNTVAMPYANIHGSLTEGSFIGSFATV  184 (496)
T ss_dssp             CTTCEEEETTEEEECSSCCEEEEESCEE-E---S-CEEESCCCCTTCTTEEEEESCEECTTCEEESCCEESCEECTTCEE
T ss_pred             hcCCEEEEEecccchhHhhhHHhhhhcC-C---c-eEEeccccCCCCccccchHHHHHHHHHhhcCCcccceEeccccee
Confidence            3799999999999999999987766654 2   2 37888    6888777777777777652           123445


Q ss_pred             EEEeCCCC--CCcceEEEeCCCCcEEEEEecCCCC--CCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEE
Q 022113           76 MVTKVDEP--SKYGVVVMEESTGKVEKFVEKPKLF--VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFA  151 (302)
Q Consensus        76 ~~~~~~~~--~~~g~v~~d~~~~~v~~~~ekp~~~--~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~  151 (302)
                      .+....++  ..++.+.    .+++..+.++|...  ..+.....+|.|+++.++.+.....            ..+   
T Consensus       185 ~L~~l~d~li~~~~~~~----~g~i~~~~~~pg~~~i~~~~~lnf~Y~f~~~~L~~~l~~~~------------~~n---  245 (496)
T 3c8v_A          185 DLSTIHNSVVRYFSYVQ----TGELVGKCVEPGQIWIKSGDELEFHYSFDKAILDKYISQEA------------GSC---  245 (496)
T ss_dssp             ESCEEESCEECTTCEEE----SSEEESCEECTTEEEEECTTSEEEEEECCHHHHTTTCBCCT------------TSC---
T ss_pred             eHHHHHHHHHHHHhhhc----CCceEEeeecCCceecccccccceEEEcCHHHHHHHHhhcc------------Ccc---
Confidence            55555565  5677662    46777777887531  1122344599999988865421100            000   


Q ss_pred             EEecCeeEec--CChHHHHHHHHHHH--HhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcE
Q 022113          152 MVLPGFWMDI--GQPRDYITGLRLYL--DSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVR  227 (302)
Q Consensus       152 ~~~~g~~~di--gt~~~~~~a~~~~l--~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~  227 (302)
                        .++.|.|+  ..++++.+......  ........+.+.+++.+.+++.|++++.|+++|.| .+++||++|.|+++|.
T Consensus       246 --~~g~~~Dll~~~~~d~~~i~~~~~~~~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I-~~v~IG~~~~I~~~~~  322 (496)
T 3c8v_A          246 --PTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYL-DNAWMGKGSNAQENCY  322 (496)
T ss_dssp             --CBSHHHHHHHTTTHHHHHHHHC--------CCTTCEECTTSEEESSCEECTTCEECTTCEE-EEEEECTTCEECTTCE
T ss_pred             --ccceeeehhccchHHHHHHhhccccccCcccCCCcEECCCcEEeCCeEECCCCEECCCcEE-eceEecCCCEECCCce
Confidence              13334433  34444444322110  01111223556667777777888888888888888 6889999999999999


Q ss_pred             EeceEEccCCEECCCcEEeccEECCCCEECCCcEEccC----cEECCCcEECCceEEc--CCeEecCccccc
Q 022113          228 LSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYSN--GGVVLPHKEIKS  293 (302)
Q Consensus       228 i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~----~~i~~~~~v~~~~~v~--~~~v~~~~~~~~  293 (302)
                      |.+|+|+++|.|++++.+.+++||++|+||+++.|.++    ++||++|.||+++++.  ++..+|+..+-.
T Consensus       323 I~~~vIG~~~~Ig~~a~I~gv~IGd~v~IG~~a~I~~~~~~~v~IG~~a~IGagsvV~~~~~~~I~~~s~v~  394 (496)
T 3c8v_A          323 IINSRLERNCVTAHGGKIINAHLGDMIFTGFNSFLQGSESSPLKIGDGCVVMPHTIIDLEEPLEIPAGHLVW  394 (496)
T ss_dssp             EEEEEEEESCEECTTCEEESEEEEETCEECTTCEEECCSSSCEEECTTCEECTTCEEECSSCEEECSSEEEC
T ss_pred             EeceEeCCCCEECCCcEEcCceECCCcEECCCCEEeCCCCcceEECCCCEECCCCEEecCCCcEeCCCCEEE
Confidence            99999999999999999999999999999999999999    9999999999999998  788888776544

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=99.82  E-value=8.2e-19  Score=153.08  Aligned_cols=162  Identities=20%  Similarity=0.327  Sum_probs=132.9

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcce
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGV   88 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   88 (302)
                      ++||+++.|..|+++.||+++++.+++++..   ++++++.||.+ .+.++.++++.|.+.+.++++++.+..+|..||+
T Consensus        71 ~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~  147 (293)
T 1fxo_A           71 SNWGLDLQYAVQPSPDGLAQAFLIGESFIGN---DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPERYGV  147 (293)
T ss_dssp             GGGTCEEEEEECSSCCCGGGHHHHTHHHHTT---SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSCGGGSEE
T ss_pred             cccCceEEEeeCCCCCCHHHHHHHHHHHhCC---CCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCCcccCcE
Confidence            3589999999999999999999999999863   78999999985 4678999999998777778888888888889999


Q ss_pred             EEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC----c-cccchHHHHhcCcEEEEEec-Ce-eEec
Q 022113           89 VVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS----I-EKEVFPKIALEGKLFAMVLP-GF-WMDI  161 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~----~-~~~~~~~l~~~~~v~~~~~~-g~-~~di  161 (302)
                      +.+|+ ++++++|.|||..+.+++.++|+|+|++++++.+..-..+    + ..+.+..+++.+++.++... ++ |.|+
T Consensus       148 v~~d~-~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Di  226 (293)
T 1fxo_A          148 VEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDT  226 (293)
T ss_dssp             EEECT-TSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTTSEEEEC
T ss_pred             EEECC-CCcEEEEEECCCCCCCCeEEEEEEEEcHHHHHHHHhcCcccCCceeHHHHHHHHHhcCCeEEEEeCCCCEEEcC
Confidence            99986 7999999999977677899999999999998766421111    1 13456667777888877775 74 9999


Q ss_pred             CChHHHHHHHHHHH
Q 022113          162 GQPRDYITGLRLYL  175 (302)
Q Consensus       162 gt~~~~~~a~~~~l  175 (302)
                      +||++|.++...+.
T Consensus       227 gt~edl~~a~~~~~  240 (293)
T 1fxo_A          227 GTHDSLLEAGQFIA  240 (293)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999977553

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=99.82  E-value=5.6e-19  Score=154.25  Aligned_cols=162  Identities=22%  Similarity=0.345  Sum_probs=132.4

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcce
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGV   88 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   88 (302)
                      ++||+++.|+.|+.+.||+++++.+++++..   ++++++.||++ .+.++.++++.|.+.+.+++++..+..+|..||+
T Consensus        72 ~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~yg~  148 (296)
T 1mc3_A           72 SEFGIQLEYAEQPSPDGLAQAFIIGETFLNG---EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGV  148 (296)
T ss_dssp             GGGTCEEEEEECSSCCCSTHHHHHTHHHHTT---SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSCCSSSBB
T ss_pred             cccCceEEEeccCCCCCHHHHHHHHHHHhCC---CCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCCcccCCE
Confidence            4589999999999999999999999999863   68888889984 4778999999997766778888888888999999


Q ss_pred             EEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCcc-----ccchHHHHhcCcEEEEEec-Ce-eEec
Q 022113           89 VVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIE-----KEVFPKIALEGKLFAMVLP-GF-WMDI  161 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~~v~~~~~~-g~-~~di  161 (302)
                      +.+|+ ++++++|.|||..+.+++.++|+|+|++++++.+..-..+..     .+++..+++.+++.++... ++ |.|+
T Consensus       149 v~~d~-~g~v~~~~ekp~~~~s~~~~~Giy~~~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Di  227 (296)
T 1mc3_A          149 VEFDD-NFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDT  227 (296)
T ss_dssp             CEEET-TEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCTTCEEEEC
T ss_pred             EEECC-CCcEEEEEECCCCCCCCEEEEEEEEEcHHHHHHHHhcCccccCCccHHHHHHHHHhcCCeEEEEeCCCCEEEeC
Confidence            99986 789999999997777789999999999999877643221111     3445566777788777775 75 9999


Q ss_pred             CChHHHHHHHHHHH
Q 022113          162 GQPRDYITGLRLYL  175 (302)
Q Consensus       162 gt~~~~~~a~~~~l  175 (302)
                      ||+++|.++...+.
T Consensus       228 gt~edl~~a~~~~~  241 (296)
T 1mc3_A          228 GTHDSLIEASTFVQ  241 (296)
T ss_dssp             CSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=99.81  E-value=1.4e-18  Score=152.47  Aligned_cols=159  Identities=25%  Similarity=0.319  Sum_probs=129.2

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC-----c---CHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE-----Y---PFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~-----~---~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      +++++.|+.|+.++||+++|+.|++++..   ++|++++||++++     .   ++.++++.|++.+. .++++.+.+++
T Consensus       100 ~~~~i~~~~~~~~~Gt~~al~~a~~~~~~---~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~  175 (302)
T 2e3d_A          100 PHVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPVADV  175 (302)
T ss_dssp             TTCEEEEEECSSCCCHHHHHHHTHHHHCS---SCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEECSCG
T ss_pred             cCcceEEeeCCccCCHHHHHHHHHHHcCC---CcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEccCC
Confidence            47899999999999999999999999853   7899999999876     2   79999999987766 77888887778


Q ss_pred             CCcceEEEeC---CCC---cEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEE
Q 022113           84 SKYGVVVMEE---STG---KVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLF  150 (302)
Q Consensus        84 ~~~g~v~~d~---~~~---~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~  150 (302)
                      ..||++..+.   +++   ++..|.|||..  ....++++|+|+|++++|+.++....+     ...+.++.+++++++.
T Consensus       176 ~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~  255 (302)
T 2e3d_A          176 TAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVE  255 (302)
T ss_dssp             GGSEEEECTTCCCCTTCEEEECEEEESCCTTTCSCSEEEEEEEEECTTHHHHHTCCCC----CCCHHHHHHHHHHHSCEE
T ss_pred             CCccEEEecccccCCCCceeEEEEEECCCCCccccceEEEEEEEECHHHHHHHHhhCCCCCCceehHHHHHHHHHhCCEE
Confidence            8899987631   256   89999999863  346799999999999999887643221     1234566667667999


Q ss_pred             EEEecCeeEecCChHHHHHHHHHH
Q 022113          151 AMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       151 ~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      ++.++++|.|+|+|++|.+++..+
T Consensus       256 ~~~~~~~~~DIgt~~d~~~a~~~~  279 (302)
T 2e3d_A          256 AYHMKGKSHDCGNKLGYMQAFVEY  279 (302)
T ss_dssp             EEECCSCEEECSSHHHHHHHHHHH
T ss_pred             EEEeCCeEEcCCCHHHHHHHHHHH
Confidence            999999999999999999998544

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=99.81  E-value=1.5e-18  Score=151.42  Aligned_cols=162  Identities=22%  Similarity=0.349  Sum_probs=131.9

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcce
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGV   88 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   88 (302)
                      ++||+++.|+.|+++.||+++++.+++++..   ++++++.||.+ .+.++.++++.|.+...+.+++..+..+|.+||+
T Consensus        72 ~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~---~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp~~~g~  148 (295)
T 1lvw_A           72 SQFGVRFSYRVQEEPRGIADAFIVGKDFIGD---SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGV  148 (295)
T ss_dssp             GGGTSEEEEEECSSCCCGGGHHHHTHHHHTT---SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEE
T ss_pred             cccCceEEEeeCCCCCChHHHHHHHHHHhCC---CcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCCcccCCE
Confidence            4589999999999999999999999999863   68888889984 4778999999998777778888888888889999


Q ss_pred             EEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC----c-cccchHHHHhcCcEEEEEec-Ce-eEec
Q 022113           89 VVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS----I-EKEVFPKIALEGKLFAMVLP-GF-WMDI  161 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~----~-~~~~~~~l~~~~~v~~~~~~-g~-~~di  161 (302)
                      +.+|+ ++++++|.|||..+.+++.++|+|+|++++++.+..-..+    + ..+++..+++.+++.++... ++ |.|+
T Consensus       149 v~~d~-~g~v~~~~ekp~~~~s~~~~~Giy~f~~~~l~~~~~~~~~~~ge~~~td~~~~~l~~g~~~v~~~~~g~~w~Di  227 (295)
T 1lvw_A          149 VEFDS-EGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDT  227 (295)
T ss_dssp             EEECT-TSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCC
T ss_pred             EEECC-CCcEEEEEECCCCCCCCEEEEEeEEEcHHHHHHHHhcCCcccCceeHHHHHHHHHHcCCcEEEEeCCCCeEEeC
Confidence            99986 7999999999976667899999999999998766321111    1 13445566777787777665 74 9999


Q ss_pred             CChHHHHHHHHHHH
Q 022113          162 GQPRDYITGLRLYL  175 (302)
Q Consensus       162 gt~~~~~~a~~~~l  175 (302)
                      +||++|.++...+.
T Consensus       228 gt~edl~~a~~~~~  241 (295)
T 1lvw_A          228 GTHDGLLEASSFIE  241 (295)
T ss_dssp             SSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987653

>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*

Probab=99.80  E-value=3.4e-18  Score=146.55  Aligned_cols=153  Identities=32%  Similarity=0.541  Sum_probs=126.9

Q ss_pred             EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCC
Q 022113           16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST   95 (302)
Q Consensus        16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~   95 (302)
                      +.+..++.++||+++|+.|++++..  +++|++++||++++.++.++++.|.+.++++++...  +++..||.+.++  +
T Consensus        97 v~~~~~~~~~gt~~al~~a~~~~~~--~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~g~v~~~--~  170 (259)
T 1tzf_A           97 VTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--FPPGRFGALDIQ--A  170 (259)
T ss_dssp             EEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--CCCCCSEEEEEE--T
T ss_pred             eeeeecccccCcHHHHHHHHHhcCC--CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe--cCCCCccEEEEc--C
Confidence            4455667789999999999999842  378999999999999999999999887777776543  467789999887  6


Q ss_pred             CcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113           96 GKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus        96 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      +++..|.|||... ..++++|+|+|++++|+.++.....+..+.++.+++++++.++..+++|.|++++++|.+++..+.
T Consensus       171 g~v~~~~ekp~~~-~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~dI~t~~d~~~a~~~~~  249 (259)
T 1tzf_A          171 GQVRSFQEKPKGD-GAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLWE  249 (259)
T ss_dssp             TEEEEEEESCSCC-SCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEEEecCCCC-CceEEEEEEEeCHHHHHhhcccccccHHHHHHHHHHcCCEEEEEeCcEEEeCCCHHHHHHHHHHHh
Confidence            8999999999653 468999999999999988765444455677777787789999999999999999999999987664

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.77  E-value=4.5e-19  Score=150.45  Aligned_cols=124  Identities=19%  Similarity=0.253  Sum_probs=97.7

Q ss_pred             CeeEecCChHHHHHHHHHHHHhhccc---------------cccccccCceEecceEEcCCcEECCCCEECCCcEECCCC
Q 022113          156 GFWMDIGQPRDYITGLRLYLDSLRKK---------------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC  220 (302)
Q Consensus       156 g~~~digt~~~~~~a~~~~l~~~~~~---------------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~  220 (302)
                      |+|.|+++   +++++..+++.....               ..+.+.+++.|.+++.|++++.|++++.|+++++||++|
T Consensus        52 g~w~di~~---~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~  128 (240)
T 3r8y_A           52 GEWSEIKT---ILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGS  128 (240)
T ss_dssp             EEHHHHHH---HHHHTTTTEEEEEEEECCBSBCSCBCCCTTCSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTC
T ss_pred             ccHHHHHH---HHHhccceechhhhhhhhhhhccchhhccCCCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCC
Confidence            34888877   666666554322211               125566777777788888888888888888888888888


Q ss_pred             EECCCcEEe-ceEEccCCEECCCcEEec---------cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          221 VVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       221 ~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      .|+.++.|. +++|+++|.|++++.+.+         ++|+++|+||.++.|.+++.||+++.|++++++..
T Consensus       129 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~  200 (240)
T 3r8y_A          129 MIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTE  200 (240)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECCCCEECCCCEECC
Confidence            888888886 789999999999999976         89999999999999999999999999999988754

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=99.76  E-value=2.5e-18  Score=150.44  Aligned_cols=160  Identities=24%  Similarity=0.318  Sum_probs=110.8

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC---cCHHHHHHHHHHcCCcEEEEEEeC--CCCCCc
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE---YPFAEMIEFHKAHGGEASIMVTKV--DEPSKY   86 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~---~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~   86 (302)
                      .|.++.|+.|+.++||+++++.|++++..   ++|+|++||++++   .++.++++.|++.+. .++++.+.  +++..|
T Consensus       104 ~g~~i~~~~~~~~~Gt~~al~~a~~~~~~---~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~y  179 (297)
T 2ux8_A          104 KPGNIAYVRQQEPMGLGHAVWCARDIVGD---EPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRY  179 (297)
T ss_dssp             STTSEEEEECCSCCCHHHHHHTTHHHHCS---SCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC----------
T ss_pred             CCCceEEEeCCCCCChHHHHHHHHHHcCC---CcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCC
Confidence            46788999998999999999999999853   7999999999876   569999999987665 56666554  466789


Q ss_pred             ceEEEeC-CCC--cEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcCcEEEEEecC
Q 022113           87 GVVVMEE-STG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEGKLFAMVLPG  156 (302)
Q Consensus        87 g~v~~d~-~~~--~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~v~~~~~~g  156 (302)
                      |++..++ +++  ++..|.|||.  .....++++|+|+|++++|+.++....     ....+.++.+++++++.++.+++
T Consensus       180 g~v~~~~~~~~~~~v~~~~ekp~~~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~~  259 (297)
T 2ux8_A          180 GIITPGTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRILENQGKGAGGEIQLTDAMQRMIGDQPFHGVTFQG  259 (297)
T ss_dssp             -CCCCCCBCSSEEEC--------------CCCEEEEEEECTHHHHHHHHTC--------CCTTGGGGTTTSCEEEEECSS
T ss_pred             CeEEecccCCCceeEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhhCCCCCCeeEHHHHHHHHHhcCCEEEEEecc
Confidence            9887652 244  8999999985  334578999999999999987753211     11245677777778999999999


Q ss_pred             eeEecCChHHHHHHHHHHH
Q 022113          157 FWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       157 ~~~digt~~~~~~a~~~~l  175 (302)
                      +|.|++||++|.+++..++
T Consensus       260 ~w~dIgt~~dl~~a~~~~~  278 (297)
T 2ux8_A          260 TRYDCGDKAGFIQANLAVA  278 (297)
T ss_dssp             EEEETTSHHHHHHHHHHHH
T ss_pred             eEEeCCCHHHHHHHHHHHH
Confidence            9999999999999986554

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=1.3e-17  Score=147.48  Aligned_cols=159  Identities=24%  Similarity=0.339  Sum_probs=125.3

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCc--EEEEeCCeecC--cCHHHHHHHHHHcCCcEEEEEEeCC--CCCC
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEP--FFVLNSDVISE--YPFAEMIEFHKAHGGEASIMVTKVD--EPSK   85 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~--~lv~~gD~l~~--~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~   85 (302)
                      +|.++.|+.|++++||+++++.|++++..   ++  |+|++||++++  .++.++++.|++.+. .++.+.+.+  ++..
T Consensus       103 ~g~~i~~~~~~~~~Gt~~al~~a~~~l~~---~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~  178 (323)
T 2pa4_A          103 DLIKAVPVTQDKPLGLGHAVGLAESVLDD---DEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSK  178 (323)
T ss_dssp             HHCEEEEEECSSCCCHHHHHHTTGGGSCS---SCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGG
T ss_pred             cCcceEEEeCCccCCcHHHHHHHHHHhcC---CCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCC
Confidence            36788899998899999999999998853   44  99999999876  569999999987664 566666553  5678


Q ss_pred             cceEEEe----CCCC--cEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccCCCCCc-----cccchHHHHhc-CcEEE
Q 022113           86 YGVVVME----ESTG--KVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPTSI-----EKEVFPKIALE-GKLFA  151 (302)
Q Consensus        86 ~g~v~~d----~~~~--~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~-~~v~~  151 (302)
                      ||++.++    + ++  ++..|.|||.  .....+.++|+|+|++++|+.++....+.     ..+.++.++++ .++.+
T Consensus       179 yg~v~~d~~~~~-~~~~~V~~~~Ekp~~~~~~~~~~~~GiY~~~~~~~~~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~  257 (323)
T 2pa4_A          179 YGIFEIEADTKD-SDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGGELQLTDAIDLLIDEGHPVHI  257 (323)
T ss_dssp             SEEEEEEECCSS-TTEEEEEEEEESCCTTTCSCSEEEEEEEEEETHHHHHHHHCCCCGGGCCCHHHHHHHHHHTTCCEEE
T ss_pred             ccEEEeCCcccC-CCceeEEEEEECCCCccccccEEEEEEEEECHHHHHHHHhhCCCCCCeEeHHHHHHHHHHcCCCEEE
Confidence            9999876    4 44  9999999995  33467899999999999998875322211     14556667766 78999


Q ss_pred             EEecCeeEecCChHHHHHHHHHHH
Q 022113          152 MVLPGFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       152 ~~~~g~~~digt~~~~~~a~~~~l  175 (302)
                      +.++++|.|++||++|.+++..++
T Consensus       258 ~~~~g~w~DIgt~~dl~~a~~~~~  281 (323)
T 2pa4_A          258 VIHQGKRHDLGNPGGYIPACVDFG  281 (323)
T ss_dssp             EECCSEEEECSSHHHHHHHHHHHH
T ss_pred             EEeCCeEEeCCCHHHHHHHHHHHh
Confidence            999999999999999999985443

>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}

Probab=99.76  E-value=1.2e-17  Score=142.85  Aligned_cols=161  Identities=22%  Similarity=0.340  Sum_probs=117.7

Q ss_pred             hHHHHHhhcCCcE--EEEEecCCCCCChHHHHHcHhhhcc---CCCCcEEEEeCCeec-CcCHHHHHHHHHHcCCcEEEE
Q 022113            3 NFLKEFEAKLGIK--IICSQETEPLGTAGPLALARDKLID---DTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIM   76 (302)
Q Consensus         3 ~~~~~~~~~~g~~--i~~~~~~~~~Gt~~al~~a~~~i~~---~~~~~~lv~~gD~l~-~~~l~~~~~~~~~~~~~~~l~   76 (302)
                      +++.+.-++++.+  ..++.|++++||++|+++|++++..   +.+++|+|++||+++ +.++.++     .+.++.+++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~  135 (255)
T 4evw_A           61 VFVREKATQLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLE  135 (255)
T ss_dssp             HHHHHHHHHHTCSSEEEEEESSCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEE
T ss_pred             HHHHHHHHHcCCCCceEEEeCCCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEE
Confidence            3444433334432  3567788999999999999999820   114789999999988 5666553     245678889


Q ss_pred             EEeCCCCCCcceEEEeCCCC--cEEEEEecCCCCCCCeEEEEEEEeCHh-hH-h----hccC------CCCCccccchHH
Q 022113           77 VTKVDEPSKYGVVVMEESTG--KVEKFVEKPKLFVGNKINAGIYLLNPA-VL-D----RIEL------RPTSIEKEVFPK  142 (302)
Q Consensus        77 ~~~~~~~~~~g~v~~d~~~~--~v~~~~ekp~~~~~~~~~~Giy~~~~~-~l-~----~l~~------~~~~~~~~~~~~  142 (302)
                      +.+.++| .||++..|+ +|  +|++|.||+.  .++++++|+|+|++. .| +    .+..      .......++++.
T Consensus       136 ~~~~~~p-~yG~v~~d~-~g~~~V~~i~EK~~--~s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~~~~gE~~ltd~i~~  211 (255)
T 4evw_A          136 VFQGGGD-NWSFAKPEH-AGSTKVIQTAEKNP--ISDLCSTGLYHFNRKEDYLEAYREYVARPSQEWERGELYIAPLYNE  211 (255)
T ss_dssp             EEECCSS-CSCEEEESS-TTCCBEEEEESSSC--SSSEEEEEEEEESCHHHHHHHHHHHHTSCGGGCSCSCCCSTTHHHH
T ss_pred             EEecCCC-ceeEEEECC-CCCeEEEEEEeccC--ccCcEEEeEEEECcHHHHHHHHHHHHhcccccccCCeEehHHHHHH
Confidence            9888776 999999986 67  9999999953  468999999999985 22 2    2221      112223566777


Q ss_pred             HHhcC-cEEEEEec-CeeEecCChHHHHHHHH
Q 022113          143 IALEG-KLFAMVLP-GFWMDIGQPRDYITGLR  172 (302)
Q Consensus       143 l~~~~-~v~~~~~~-g~~~digt~~~~~~a~~  172 (302)
                      +++++ ++.++.++ ++|+|+|+|++|.++..
T Consensus       212 li~~g~~v~~~~~~~~~w~digt~~~l~~~~~  243 (255)
T 4evw_A          212 LIQKGLNIHYHLIARHEVIFCGVPDEYTDFLR  243 (255)
T ss_dssp             HHHTTCCEEEEECCGGGCEECCSHHHHHHHHH
T ss_pred             HHHCCCEEEEEEeccccEEECCCHHHHHHHHh
Confidence            77665 68888885 99999999999988864

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.72  E-value=1.2e-16  Score=128.74  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=94.2

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+.+++.+.+++.|++++.|+++|.|.++   ++||++|.|++++.|.     +++|+++|.|++++.+.+++|++++
T Consensus        18 ~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~   97 (173)
T 1xhd_A           18 SAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDA   97 (173)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTC
T ss_pred             CcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCC
Confidence            4556777777778888888888888888765   7999999999999998     7999999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +|++++.|.+++.||+++.|++++++.++..+|+..
T Consensus        98 ~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~  133 (173)
T 1xhd_A           98 LIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT  133 (173)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             EEcCCCEEcCCCEECCCCEECCCCEECCCcEeCCCC
Confidence            999999999999999999999999887766665544

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.71  E-value=1.7e-16  Score=130.11  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             ccccccccCceEecceEEcCCcEECCCCEEC---CCcEECCCCEECCCcEEe-----------------ceEEccCCEEC
Q 022113          181 KSSLKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLS-----------------RCTVMRGVRIK  240 (302)
Q Consensus       181 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~-----------------~~~i~~~~~i~  240 (302)
                      ...+.+.+++.|.+++.||+++.|+++|.|.   .++.||++|.|++++.|.                 ++.|++++.|+
T Consensus        16 ~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~   95 (194)
T 3tv0_A           16 APGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIGTNNVFE   95 (194)
T ss_dssp             CTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEECSSCEEC
T ss_pred             CCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEECCcceEe
Confidence            3445555555666666666666666666663   245888999999999884                 46899999999


Q ss_pred             CCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       241 ~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      .++.+.++.|+++++|+++++|++++.||++|.|+++++|.+++.+|+..+
T Consensus        96 ~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~~~Ip~~sv  146 (194)
T 3tv0_A           96 VGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTFEVIPENTV  146 (194)
T ss_dssp             TTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCCEEECTTEE
T ss_pred             cceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCCcEECCCCE
Confidence            999999999999999999999999999999999999999888877776654

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.71  E-value=1.2e-16  Score=130.78  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=90.4

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEe------ceEEccCCEECCCcEEeccEECCCC
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS------RCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~------~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      +.+.+++.|.+++.|++++.|+++|.|.+   .++||++|.|++++.|.      +++|+++|.|++++.+.+++|+++|
T Consensus        40 ~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~  119 (191)
T 3ixc_A           40 AFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNA  119 (191)
T ss_dssp             SEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTC
T ss_pred             CEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCC
Confidence            44555666666666777777777776653   33789999999999998      8999999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      +|++++.|.+++.||+++.|++++++.++..+|+..+
T Consensus       120 ~Ig~~~~I~~~~~Ig~~~~Ig~gsvV~~~~~i~~~~~  156 (191)
T 3ixc_A          120 FVGMGSIVMDRAVMEEGSMLAAGSLLTRGKIVKSGEL  156 (191)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTEE
T ss_pred             EECCCCEEeCCeEECCCCEECCCCEECCCcCcCCCeE
Confidence            9999999999999999999999999988777776654

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.71  E-value=1.1e-16  Score=130.50  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=93.7

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCc---EECCCCEECCCcEE------------eceEEccCCEECCCcEEec
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDV---AVGPGCVVESGVRL------------SRCTVMRGVRIKKHACISS  247 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~---~ig~~~~i~~~~~i------------~~~~i~~~~~i~~~~~i~~  247 (302)
                      ...+++++.+.+++.|++++.|++++.|.+++   .||++|.|++++.|            .+++|+++|.|++++.|.+
T Consensus        21 ~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~  100 (187)
T 3r3r_A           21 RVMIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHG  100 (187)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEES
T ss_pred             CeEECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeC
Confidence            34566677777777777888888888777654   99999999999999            5799999999999999999


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI  291 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~  291 (302)
                      ++||++++||+++.|.+++.||+++.|++++++.++..+|+..+
T Consensus       101 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~v  144 (187)
T 3r3r_A          101 CTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYL  144 (187)
T ss_dssp             CEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECTTEE
T ss_pred             cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcCcCCCcE
Confidence            99999999999999999999999999999999887777666554

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.70  E-value=1.5e-16  Score=127.99  Aligned_cols=108  Identities=17%  Similarity=0.225  Sum_probs=94.2

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+++++.+.+++.+++++.|++++.|.++   ++||++|.|++++.|.     +++|+++|.|++++.|.+++|++++
T Consensus        16 ~~~I~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~   95 (173)
T 1v3w_A           16 SAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYV   95 (173)
T ss_dssp             TCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSE
T ss_pred             CCEECCCCEEeCCEEECCCCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCC
Confidence            4567777788888888888888888888764   8999999999999998     5899999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +|++++.|.+++.||+++.|++++++.++..+|+..
T Consensus        96 ~Ig~~~~i~~~~~Ig~~~~Ig~~s~V~~~~~i~~~~  131 (173)
T 1v3w_A           96 IIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYS  131 (173)
T ss_dssp             EECTTCEECTTCEECSSEEECTTCEECTTCEECTTE
T ss_pred             EECCCCEEeCCCEECCCCEECCCCEECCCcEeCCCc
Confidence            999999999999999999999998887666555543

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=99.70  E-value=5.1e-17  Score=142.85  Aligned_cols=158  Identities=18%  Similarity=0.261  Sum_probs=111.1

Q ss_pred             CCc-EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeec-CcC-HHHHHHH---HHHcCCcEEEEEEeCCCCCC
Q 022113           12 LGI-KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEF---HKAHGGEASIMVTKVDEPSK   85 (302)
Q Consensus        12 ~g~-~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~-~~~-l~~~~~~---~~~~~~~~~l~~~~~~~~~~   85 (302)
                      ||+ ++.|+.|+.++||+++++.+++++..  ++.|++++||+++ +.+ +.++++.   |.++++++|+++.+.+++..
T Consensus        74 ~~~~~~~~i~~~~~~gt~~al~~a~~~l~~--~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~  151 (308)
T 2qh5_A           74 IKNKSVGFLLESLSKNTANAIALSALMSDK--EDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNTE  151 (308)
T ss_dssp             CSSCEEEEEEESSCCCHHHHHHHHHHTSCT--TSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSCCTT
T ss_pred             hCCCccEEEeCCCCCChHHHHHHHHHHhCC--CCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCCCCC
Confidence            676 78899999999999999999998842  2459999999987 677 9999887   76777788888888877788


Q ss_pred             cceEEEeCCCCcEEEEEecCCCCC--------CCeEEEEEEEeCHhhH-hhccCC-----------------C----CCc
Q 022113           86 YGVVVMEESTGKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIELR-----------------P----TSI  135 (302)
Q Consensus        86 ~g~v~~d~~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~l-~~l~~~-----------------~----~~~  135 (302)
                      ||++..++ +++|+.|.|||....        ..++++|+|+|++++| +.++..                 .    ..+
T Consensus       152 ~g~i~~d~-~~~V~~~~Ekp~~~~~~~~~~~g~~~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~e~~~  230 (308)
T 2qh5_A          152 FGYIESPN-GLDVKRFIEKPSLDKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENAYFFEKKI  230 (308)
T ss_dssp             SEEEECSS-SSBCSEEEESCCHHHHHHHHHHCCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHHHHGGGCEEECCSSSCE
T ss_pred             ceEEEECC-CCEEEEEEECCChHHHHHHhhcCCeEEEeEEEEEEHHHHHHHHHHhChHHHHHHHHHhhccccccccchhh
Confidence            99998874 689999999996421        4689999999999775 333210                 0    111


Q ss_pred             ---cccchH---------HHHhc-CcEEEEEecCeeEecCChHHHHHHHH
Q 022113          136 ---EKEVFP---------KIALE-GKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       136 ---~~~~~~---------~l~~~-~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                         ..+.|+         .++++ .++.++.++++|.|+|+|++|.+++.
T Consensus       231 ~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~  280 (308)
T 2qh5_A          231 ARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAA  280 (308)
T ss_dssp             EEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC------------
T ss_pred             hhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhh
Confidence               123333         13444 68999999999999999999988864

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.69  E-value=3.2e-16  Score=127.88  Aligned_cols=107  Identities=20%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEece------------EEccCCEECCCcEEecc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSRC------------TVMRGVRIKKHACISSS  248 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~~------------~i~~~~~i~~~~~i~~~  248 (302)
                      +.+.+++.+.+++.||+++.|+++|.|.++   +.||++|.|++++.|..+            .|+++|.|++++.|.++
T Consensus        26 ~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~  105 (189)
T 3r1w_A           26 VFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGC  105 (189)
T ss_dssp             CEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESC
T ss_pred             cEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCc
Confidence            445666666677777777777777777633   488999999999999754            99999999999999999


Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +||++|+|++++.|.+++.||+++.|++++++.++..+|+..
T Consensus       106 ~Ig~~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~g~~i~~~~  147 (189)
T 3r1w_A          106 TIGNRVLIGMKSMIMDGAIVEDEVIVAAGATVSPGKVLESGF  147 (189)
T ss_dssp             EECSSEEECTTCEECTTCEECSSCEECTTCEECTTCEECTTE
T ss_pred             EECCCcEECCCCEEcCCCEECCCCEEccCCEECCCCEeCCCC
Confidence            999999999999999999999999999999888776666554

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.67  E-value=2.8e-15  Score=122.81  Aligned_cols=125  Identities=14%  Similarity=0.080  Sum_probs=87.9

Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEc--CCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVH--ESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  234 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  234 (302)
                      ..-++++....+..+.+++. .......+++++.+.+++.++  +++.|+++++|++++.||++|.|++++.|. ++.|+
T Consensus        51 ~iaig~~~~r~~~~~~l~~~-~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~Ig  129 (194)
T 3bfp_A           51 FIAIGNNEIRKKIYQKISEN-GFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  129 (194)
T ss_dssp             EECCCCHHHHHHHHHHHHTT-TCCBCCEECTTCEECTTCEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEeCCHHHHHHHHHHHHHc-CCccccccCCeEEECCCceeCCCCCcEEcCCCEECCCCEECCCCEECCCCEEcCCCEEC
Confidence            45677776555544433221 122235567777777777777  777777777777777888888888887776 67788


Q ss_pred             cCCEECCCcEEec-cEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          235 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       235 ~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      ++|.|++++.|.+ ++|+++++|++++.|.+++.||+++.|++++++..+
T Consensus       130 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~  179 (194)
T 3bfp_A          130 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN  179 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence            8888888888855 778888888888877777777777777777776543

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.67  E-value=1.4e-16  Score=131.76  Aligned_cols=101  Identities=15%  Similarity=0.227  Sum_probs=88.3

Q ss_pred             ccccccCceEec--ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEE-----------
Q 022113          183 SLKLATGANIVG--NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----------  245 (302)
Q Consensus       183 ~~~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----------  245 (302)
                      ...+.+++.|.+  ++.|++++.|+++|.|.++++||++|.|++++.|.    +++|+++|.|++++.|           
T Consensus        38 ~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~  117 (205)
T 3vbi_A           38 NVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNA  117 (205)
T ss_dssp             SEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSS
T ss_pred             CCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCccccc
Confidence            355677777776  78888889999999998899999999999999994    4999999999999999           


Q ss_pred             ---------------eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          246 ---------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       246 ---------------~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                                     ++++||++|+||+++.|.+++.||++|.|+++++|..+
T Consensus       118 ~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~~  170 (205)
T 3vbi_A          118 LMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKES  170 (205)
T ss_dssp             CCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECSC
T ss_pred             ccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECCc
Confidence                           45899999999999999999999999999999987644

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.66  E-value=3.4e-15  Score=124.77  Aligned_cols=124  Identities=18%  Similarity=0.164  Sum_probs=96.5

Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccC
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG  236 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~  236 (302)
                      +.-+++++...+..+.+.. ..-.....+++.+.+.+.+.+++++.|+++++|++++.||++|.|+.++.|. ++.|+++
T Consensus        75 ~iAIg~~~~R~~i~~~l~~-~g~~~~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~  153 (220)
T 4ea9_A           75 FVAIGDNRLRQKLGRKARD-HGFSLVNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAA  153 (220)
T ss_dssp             EECCCCHHHHHHHHHHHHH-TTCEECCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTT
T ss_pred             EEecCCHHHHHHHHHHHHh-cCCCcCCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            3456665554444433322 2222345577888888888888888888888888888888889998888887 6889999


Q ss_pred             CEECCCcEEec-cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          237 VRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       237 ~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      |.|++++.+.+ ++|+++|+||+++.|.+++.||+++.|++++++..
T Consensus       154 ~~i~~~~~i~~~v~Ig~~~~Ig~~~~i~~~~~Ig~~~~igagsvv~~  200 (220)
T 4ea9_A          154 CHLGPASALAGGVSVGERAFLGVGARVIPGVTIGADTIVGAGGVVVR  200 (220)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CEECCCCEEcCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcc
Confidence            99999998865 89999999999999988999999999999888754

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=99.66  E-value=1.2e-15  Score=130.27  Aligned_cols=165  Identities=13%  Similarity=0.113  Sum_probs=124.8

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCc-
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY-   86 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-   86 (302)
                      ..+|+++.|..|+.++||++ +..++..+.....+.|++++||. + .+.++.++++.|.++++++++++.+.+++..| 
T Consensus        59 ~~~g~~v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~  137 (252)
T 3oam_A           59 QAFGGVVCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVF  137 (252)
T ss_dssp             HHTTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHT
T ss_pred             HHcCCEEEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhh
Confidence            34799999888888999999 55666666311137899999998 4 46679999999988888899999998888777 


Q ss_pred             ----ceEEEeCCCCcEEEEEecCCC-------------CCCCeEEEEEEEeCHhhHhhccCCCCC-cc-c---cchHHHH
Q 022113           87 ----GVVVMEESTGKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELRPTS-IE-K---EVFPKIA  144 (302)
Q Consensus        87 ----g~v~~d~~~~~v~~~~ekp~~-------------~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~-~---~~~~~l~  144 (302)
                          |.+.+|+ +|+++.|.++|-.             +...+.++|+|+|++++|+.+.....+ +. .   +.+..+.
T Consensus       138 ~p~~g~vv~d~-~g~v~~fsr~~i~~~~~~~~~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~~~~~e~~E~le~lr~l~  216 (252)
T 3oam_A          138 NPNAVKVITDK-SGYALYFSRATIPWDRDNFAKADKAIVQPLLRHIGIYAYRAGFINTYLDWQPSQLEKIECLEQLRVLW  216 (252)
T ss_dssp             CTTSCEEEECT-TSBEEEEESSCSSCCHHHHHSSSCCCCSCEEEEEEEEEEETTHHHHHHHSCCCHHHHHHTCTTHHHHH
T ss_pred             CCCceEEEECC-CCeEEEEeCCCCCCCCCccccccccccccceEEEEEEEcCHHHHHHHHcCCCCcccccchhHHHHHHH
Confidence                8899986 7999999988632             225689999999999999877433222 11 1   2233344


Q ss_pred             hcCcEEEEEec-CeeEecCChHHHHHHHHHHHH
Q 022113          145 LEGKLFAMVLP-GFWMDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       145 ~~~~v~~~~~~-g~~~digt~~~~~~a~~~~l~  176 (302)
                      +..++.++..+ .+|.|+++|+++.++++.+..
T Consensus       217 ~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~  249 (252)
T 3oam_A          217 HGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAE  249 (252)
T ss_dssp             TTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHh
Confidence            45688887664 478999999999999876643

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.63  E-value=4.6e-15  Score=121.33  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~  292 (302)
                      +++|+++++||+++.|.+++.||+++.|++++++.    ++++   .|+|.++
T Consensus       102 ~~~Ig~~v~IG~~~~I~~g~~Ig~~~~IgagsvV~~~vp~~~v~~G~PAk~i~  154 (192)
T 3mqg_A          102 DTIVRQGATLGANCTVVCGATIGRYAFVGAGAVVNKDVPDFALVVGVPARQIG  154 (192)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEE
T ss_pred             CcEECCCcEECCCCEECCCCEECCCCEEcCCCEECcccCCCCEEEccCCEEEE
Confidence            35777788888888888888888888888887754    3333   3566554

>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*

Probab=99.63  E-value=4e-15  Score=121.71  Aligned_cols=76  Identities=13%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEE-eccEECCCCEECCC
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACI-SSSIIGWHSTVGQW  259 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~  259 (302)
                      +.+++++.|.+++.|++++.|++++.|++++.||++|.|++++.|.+ +.|+++|.|++++.| .++.|++++.|+++
T Consensus         4 ~~I~p~a~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~Ig~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~ig~~   81 (192)
T 3mqg_A            4 ATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQNNVSVYDNVFLEDDVFCGPS   81 (192)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECSSCEECTTCEECTTEEECTTCEECTT
T ss_pred             CEECCCcEECCCCEECCCCEECCCCEECCCcEECCCCEECCCEEECCceEECCCcEEcCCcEEeCCCEECCCCEECCc
Confidence            45677777777777777777777777777777777777777777764 777777777777777 34667777655443

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.63  E-value=6.5e-15  Score=122.47  Aligned_cols=98  Identities=20%  Similarity=0.272  Sum_probs=84.8

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECC----CcEECCCCEECCCcEEec---------------eEEccCCEECCC
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKH  242 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~  242 (302)
                      ..+.+.+++.+.+++.|++++.|+++|.|..    .++||++|.|+++|.|..               +.|+++|.|+++
T Consensus        44 ~~~~I~~~a~i~~~v~IG~~~~I~~~~~I~~~~~~~v~IG~~~~Ig~~~~I~~~~~~~~ig~~~~~~~~~IG~~v~Ig~~  123 (213)
T 3kwd_A           44 PTAYVHSFSNLIGDVRIKDYVHIAPGTSIRADEGTPFHIGSRTNIQDGVVIHGLQQGRVIGDDGQEYSVWIGDNVSITHM  123 (213)
T ss_dssp             TTCEECTTSEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECSSCCEECTTSCEESEEECTTCEECTT
T ss_pred             CCCEECCCCEEeCceEECCCCEEcCCcEEecCCCCceEECCCCEECCCCEEEecCCCceeccCCcccceEECCCcEECCC
Confidence            3466777788888888888888888888853    589999999999999974               889999999999


Q ss_pred             cEEec-cEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          243 ACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       243 ~~i~~-~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      +.|.+ ++||++|+||+++.|.. ++||+++.|++++++
T Consensus       124 ~~I~~~v~Ig~~v~IG~~a~I~~-~~Ig~~~~Igags~V  161 (213)
T 3kwd_A          124 ALIHGPAYIGDGCFIGFRSTVFN-ARVGAGCVVMMHVLI  161 (213)
T ss_dssp             CEEEEEEEECTTCEECTTCEEEE-EEECTTCEECSSCEE
T ss_pred             cEEcCCCEECCCCEECCCCEEeC-cEECCCCEEcCCCEE
Confidence            99977 99999999999999865 888888888888888

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.62  E-value=3.5e-15  Score=129.98  Aligned_cols=105  Identities=10%  Similarity=0.166  Sum_probs=76.6

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEec---------cEECCCC
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIGWHS  254 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~~  254 (302)
                      ++.+++.|++++.|++++.|+++ .|++++.||++|.|+.++.|.+ +.|+++|.|++++.+.+         ++||++|
T Consensus       131 ~I~p~a~I~~~v~Ig~g~~I~~~-~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v  209 (304)
T 3eg4_A          131 RAVPNCIVRHSAYIAPNAILMPS-FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNC  209 (304)
T ss_dssp             EECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTC
T ss_pred             EEcCCEEECCCcEECCCCEEeCC-EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCC
Confidence            34455555555555555555554 5555667777777777677763 77788888888887766         8999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +||+++.|.+++.||++|.|+++++|.+++.+++..
T Consensus       210 ~IG~~a~I~~gv~IG~~avIgagsvV~~g~~Igd~~  245 (304)
T 3eg4_A          210 FIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRA  245 (304)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCCEEETT
T ss_pred             EECCCCEEcCCcEECCCcEECCCCEEcCCeEECccc
Confidence            999999999999999999999999988777544443

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.62  E-value=5.4e-15  Score=127.45  Aligned_cols=101  Identities=13%  Similarity=0.197  Sum_probs=78.9

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEe---------ccEECCCC
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIGWHS  254 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~  254 (302)
                      ++.+++.|++++.|++++.|+++ .|++++.||++|.|+.++.|.+ +.|+++|.|++++.+.         +++||++|
T Consensus       106 ~I~p~a~I~~~~~Ig~g~~I~~~-~i~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~g~~~~~~~~~v~IGd~v  184 (276)
T 3gos_A          106 RVVPPATVRKGAFIARNTVLMPS-YVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNC  184 (276)
T ss_dssp             EECTTCEEBTTCEECTTCEECSE-EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTC
T ss_pred             EECCCcEECCCCEECCCCEEcCC-EEcCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCccccCCCCCeEECCCC
Confidence            34555566666666666666655 5666788888888888888875 8888888888888884         48999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      +||+++.|.+++.||++|.|+++++|..++.+
T Consensus       185 ~IG~~a~I~~gv~IG~~avIgagsvV~~~~~I  216 (276)
T 3gos_A          185 FVGARSEVVEGVIVEEGSVISMGVFIGQSTRI  216 (276)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCCE
T ss_pred             EECCCCEECCCCEECCCCEECCCCEECCCcEE
Confidence            99999999999999999999999988876543

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.62  E-value=4.4e-15  Score=126.30  Aligned_cols=97  Identities=18%  Similarity=0.234  Sum_probs=81.0

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCc----EECCCCEECCCcEEe------------------------ceEEc
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDV----AVGPGCVVESGVRLS------------------------RCTVM  234 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~----~ig~~~~i~~~~~i~------------------------~~~i~  234 (302)
                      .+.+.+++.|.+++.||+++.|+++|.|.+.+    +||++|.|+++|.|.                        +++|+
T Consensus        65 ~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG  144 (247)
T 1qre_A           65 TAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIG  144 (247)
T ss_dssp             TCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEEC
T ss_pred             CcEECCCCEEeCCcEECCCCEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEEC
Confidence            45566666676777777778888777776543    899999999999986                        38899


Q ss_pred             cCCEECCCcEEec-cEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          235 RGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       235 ~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      ++|.|+++|.|.+ ++|+++|+||+++.|.+ +.||+++.|+++++|
T Consensus       145 ~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~-v~Ig~~~~IgagsvV  190 (247)
T 1qre_A          145 NNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAA  190 (247)
T ss_dssp             TTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEE
T ss_pred             CCCEECCCCEEcCCcEECCCCEECCCCEEec-eEECCCCEECCCCEE
Confidence            9999999999987 99999999999999877 888888888888888

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.61  E-value=7.6e-15  Score=127.30  Aligned_cols=16  Identities=13%  Similarity=0.129  Sum_probs=7.6

Q ss_pred             eEEccCCEECCCcEEe
Q 022113          231 CTVMRGVRIKKHACIS  246 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~  246 (302)
                      +.|+++|.|+++++|.
T Consensus       101 v~IG~~~~Ig~~~~I~  116 (283)
T 4eqy_A          101 LVIGDRNTIREFTTIH  116 (283)
T ss_dssp             EEECSSCEECTTEEEE
T ss_pred             EEECCCcccCcceeEc
Confidence            3444555555544443

>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A

Probab=99.60  E-value=3.3e-14  Score=116.39  Aligned_cols=142  Identities=17%  Similarity=0.102  Sum_probs=106.0

Q ss_pred             CcEEEEEecC-eeEecCChHHHHHH-----HHHHHHhh-ccccccccccCceEecceEEcCCcEEC--CCCEECCCcEEC
Q 022113          147 GKLFAMVLPG-FWMDIGQPRDYITG-----LRLYLDSL-RKKSSLKLATGANIVGNVLVHESAQIG--EGCLIGPDVAVG  217 (302)
Q Consensus       147 ~~v~~~~~~g-~~~digt~~~~~~a-----~~~~l~~~-~~~~~~~~~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig  217 (302)
                      .++.+|..++ .|..+++.+++ ++     +.....++ .............+++++.++++++||  ++|.|+++++|+
T Consensus        27 ~~v~~f~Dd~~g~~vig~~~~~-~~~iaig~~~~r~~~~~~l~~~~~~~~~~i~~~a~i~~~~~Ig~~~g~~I~~~~~I~  105 (194)
T 3bfp_A           27 YKECIFLDDFKGMKFESTLPKY-DFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPYVVIN  105 (194)
T ss_dssp             CSEEEEEC--------CCCCCC-EEEECCCCHHHHHHHHHHHHTTTCCBCCEECTTCEECTTCEECTTSCCEECTTCEEC
T ss_pred             CeEEEEEeCCCCCeEECCcccc-eEEEEeCCHHHHHHHHHHHHHcCCccccccCCeEEECCCceeCCCCCcEEcCCCEEC
Confidence            5566666553 47777765542 11     11111111 111122233447789999999999999  999999999999


Q ss_pred             CCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          218 PGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       218 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      +++.||++|.|. +++|++++.|++++.|+. +.+..++.||++++|+.+++|.++++|++++++++++++...
T Consensus       106 ~~~~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~Igagsvv~~~  179 (194)
T 3bfp_A          106 AKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVKN  179 (194)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence            999999999997 799999999999999974 999999999999999999999999999999999999988544

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.60  E-value=3e-15  Score=129.09  Aligned_cols=100  Identities=20%  Similarity=0.188  Sum_probs=79.7

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-----ceEEccCCEECCCcEEec---------cEE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SII  250 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~i  250 (302)
                      .+++++.|+|.+.|++++.||+++.|+++++|+.++.||++|.|.     .+.|+++|.|++++.|..         ++|
T Consensus       180 vI~~gv~I~P~AvI~~GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG~~~~~~~~~V~I  259 (347)
T 3r5d_A          180 VVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISV  259 (347)
T ss_dssp             CCCTTEEESSGGGBBTTEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC------CCCCEE
T ss_pred             eccCCcEECCcCEECCCCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEccccCCCCccceEE
Confidence            345566666666666666666666666666666666666666654     489999999999999965         799


Q ss_pred             CCCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          251 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       251 ~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      |++|+||+++.|  ++.||++|.|++|++|..++++
T Consensus       260 Gdnv~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          260 GEGCLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CTTCEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             CCCCEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            999999999999  8999999999999999999863

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.60  E-value=1.3e-14  Score=126.89  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=69.5

Q ss_pred             CceEecceEEcCCcEECCCCEECC-----CcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec---------cEECCC
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGWH  253 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~  253 (302)
                      ++.|.+++.|++++.||++|+|++     ++.||++|.|+.++.|. ++.|+++|.|++++.|.+         ++||++
T Consensus       145 ~~~I~p~a~I~~~~~IG~g~~I~~~~I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~  224 (316)
T 3tk8_A          145 GFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDN  224 (316)
T ss_dssp             CCEECTTCEEBTTCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTT
T ss_pred             CcEEeCCeEEeCCcEEcCCCEECCCEEeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCC
Confidence            455666666666666666665554     55566666666555554 466777777777777654         789999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      |+||+++.|.+++.||+++.|+++++|..++
T Consensus       225 v~IG~~a~I~~gv~IG~g~vIgagsvV~~~t  255 (316)
T 3tk8_A          225 CFIGARSEVVEGVIVEENSVISMGVYLGQST  255 (316)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             CEECCCCEEcCCCEECCCCEEcCCCEEcCCe
Confidence            9999999998889999999999988888755

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.60  E-value=1.9e-14  Score=124.26  Aligned_cols=91  Identities=22%  Similarity=0.365  Sum_probs=53.8

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec---------------eEEccCCEECCCcEE-ec
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHACI-SS  247 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i-~~  247 (302)
                      +.+++++.|.+++.|++++.|+++|+|++++.||++|.|++++.|..               +.|+++|.|+++++| ++
T Consensus         9 ~~I~~~a~I~~~~~Ig~~~~Ig~~~~I~~~v~Ig~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~Ig~~~~I~~~~~i~~~   88 (273)
T 3fs8_A            9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKKHPLIIGENALIRTENVIYGD   88 (273)
T ss_dssp             CEECTTCEECSSEEECTTCEECTTCEECSSEEECTTCEECTTCEEEECCTTHHHHTCCCCCCEEECTTCEECTTCEEESS
T ss_pred             eEECCCcEECCCCEECCCcEECCCCEECCCCEECCCcEECCCcEeCCccccccccccccccceEECCCCEECCCCEEeCC
Confidence            44556666666666666666666666666666666666666666652               667777777766666 34


Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEE
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHV  274 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v  274 (302)
                      ++|++++.|+.++.|+.++.|++++.|
T Consensus        89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~I  115 (273)
T 3fs8_A           89 TIIGDNFQTGHKVTIRENTKIGNNVKI  115 (273)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEE
T ss_pred             CEECCCCEECCceEECCCCEECCCCEE
Confidence            555555555544444444444443333

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.59  E-value=1.9e-14  Score=123.81  Aligned_cols=16  Identities=19%  Similarity=0.044  Sum_probs=7.3

Q ss_pred             CcEECCCCEECCCcEE
Q 022113          213 DVAVGPGCVVESGVRL  228 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i  228 (302)
                      ++.||++|.|++++.|
T Consensus        49 ~~~IG~~~~I~~~~~I   64 (270)
T 1j2z_A           49 HTFVGKNTEIFPFAVL   64 (270)
T ss_dssp             EEEECTTCEECTTCEE
T ss_pred             CeEEcCCCEEEeeeEE
Confidence            3444444444444444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.58  E-value=7.1e-15  Score=125.80  Aligned_cols=100  Identities=20%  Similarity=0.188  Sum_probs=85.1

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-----ceEEccCCEECCCcEEec---------cE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS---------SI  249 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~---------~~  249 (302)
                      ..+++++.|+|.++|++++.||+++.|+++++|+.++.++.+|.|.     .+.|+++|.|++++.|..         ++
T Consensus       156 ~vI~~gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga~Ig~g~~In~~i~iGv~IGd~v~IgpGa~IgG~~~~~~~~~V~  235 (332)
T 3fsy_A          156 YVVPTGVRIADADRVRLGAHLAPGTTVMHEGFVNYNAGTLGASMVEGRISAGVVVGDGSDVGGGASIMGTLSGGGTHVIS  235 (332)
T ss_dssp             TCCCTTCEESCGGGBBTTEEECTTCEECTTCEECTTEEESSCCEECSEECTTCEECTTCEECTTCEECSBCC---CCBCE
T ss_pred             eecCCCcEECCcCEECCCCEECCCCEEccccEEEECCeECcCCEECCceecceEECCCCEECCCCEEcCCCCCCCccceE
Confidence            3466777788888888888888888888888888888888877774     478999999999999965         89


Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  285 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v  285 (302)
                      ||++|+||+++.|  ++.||++|.|++|++|..+++
T Consensus       236 IGDnv~IGanAtI--gVtIGd~~iIGAGSVVtkdt~  269 (332)
T 3fsy_A          236 IGKRCLLGANSGL--GISLGDDCVVEAGLYVTAGTR  269 (332)
T ss_dssp             ECTTCEECTTCEE--CSCBCSSCEECTTCEECTTCE
T ss_pred             ECCCCEECCCCEE--eeEECCCCEECCCCEECCCCE
Confidence            9999999999999  899999999999999888874

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.57  E-value=3.6e-14  Score=126.86  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             eEEEeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhc
Q 022113           88 VVVMEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus        88 ~v~~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l  128 (302)
                      +..++++.-.-+.|.++|+... -....+++.+++++..+.+
T Consensus        32 ~~~~~~a~~~~~~f~~~~~~~~~~~~~~a~~~i~~~~~~~~~   73 (357)
T 4e79_A           32 LASLENAEVNHLTFVNGEKHLDQAKVSRAGAYIVTAALKEHL   73 (357)
T ss_dssp             ECCTTTCCTTEEEECCSGGGHHHHHTCCCSEEEECHHHHHTC
T ss_pred             ecChhcCCCCcEEEeCChhHHHHHhcCCCEEEEEcHHHhhhc
Confidence            3333333334455665554320 0112346677776655443

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=99.57  E-value=5.9e-14  Score=117.23  Aligned_cols=100  Identities=17%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCCCEECCCcEEccCc
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMT  266 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~  266 (302)
                      .+.+++.+.+++++.|+++|.|+++++|++++.||++|.|. +++|+++|.|+++|.|+. +.++.++.||++++|+.++
T Consensus        99 ~~~i~~~a~i~~~v~IG~g~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~  178 (220)
T 4ea9_A           99 VNAIHPSAVVSPSVRLGEGVAVMAGVAINADSWIGDLAIINTGAVVDHDCRLGAACHLGPASALAGGVSVGERAFLGVGA  178 (220)
T ss_dssp             CCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTC
T ss_pred             CCcCCCCCEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCCEECCCC
Confidence            36677888888888888888888888888888888888887 688888888888888865 8888888888888888888


Q ss_pred             EECCCcEECCceEEcCCeEecC
Q 022113          267 ILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       267 ~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      +|.++++||+++++++++++..
T Consensus       179 ~i~~~~~Ig~~~~igagsvv~~  200 (220)
T 4ea9_A          179 RVIPGVTIGADTIVGAGGVVVR  200 (220)
T ss_dssp             EECTTCEECTTCEECTTCEECS
T ss_pred             EEcCCcEECCCCEECCCCEEcc
Confidence            8888888888888888887643

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.57  E-value=5e-14  Score=121.04  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             ECCCCEECCCcEECCCCEECCCcEE--------------eceEEccCCEECCCcEEe
Q 022113          204 IGEGCLIGPDVAVGPGCVVESGVRL--------------SRCTVMRGVRIKKHACIS  246 (302)
Q Consensus       204 i~~~~~i~~~~~ig~~~~i~~~~~i--------------~~~~i~~~~~i~~~~~i~  246 (302)
                      |+++++|.++++||++|.|++++.|              .++.|+++|.|+++++|.
T Consensus        43 I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~   99 (266)
T 3r0s_A           43 IKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATIN   99 (266)
T ss_dssp             ECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEE
T ss_pred             EcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEec
Confidence            3333333334455555555555555              345566666666665553

>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0

Probab=99.57  E-value=4.2e-14  Score=121.51  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEE--------------ecc
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI--------------SSS  248 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------~~~  248 (302)
                      +.+++.+.|++++.|++++.|+++|.|++++.||++|.|++++.|. ++.|+++|.|++++.|              ..+
T Consensus         5 ~~I~p~a~I~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v   84 (266)
T 3r0s_A            5 KKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGV   84 (266)
T ss_dssp             -CBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEE
T ss_pred             cccCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceE
Confidence            4578888999999999999999999999999999999999999998 7999999999999999              478


Q ss_pred             EECCCCEECCCcEEccC-------cEECCCcEECCceEE
Q 022113          249 IIGWHSTVGQWARVENM-------TILGEDVHVCDEIYS  280 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~-------~~i~~~~~v~~~~~v  280 (302)
                      +||+++.|+++++|..+       +.||+++.+++++.+
T Consensus        85 ~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I  123 (266)
T 3r0s_A           85 VIGKNATIREFATINSGTAKGDGFTRIGDNAFIMAYCHI  123 (266)
T ss_dssp             EECTTCEECTTCEEECCCTTTTSEEEECTTCEECTTCEE
T ss_pred             EECCCCEECCceEecCCcccCCccEEECCCceeCCcceE
Confidence            88888888888877532       444444444444433

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.57  E-value=5.3e-14  Score=120.89  Aligned_cols=17  Identities=12%  Similarity=0.194  Sum_probs=9.0

Q ss_pred             ceEEccCCEECCCcEEe
Q 022113          230 RCTVMRGVRIKKHACIS  246 (302)
Q Consensus       230 ~~~i~~~~~i~~~~~i~  246 (302)
                      ++.|++++.|+++++|.
T Consensus        85 ~~~IG~~~~Ig~~~~I~  101 (265)
T 4e6u_A           85 WLEIGNNNLIREHCSLH  101 (265)
T ss_dssp             EEEECSSCEECTTCEEE
T ss_pred             eEEECCCeEECCceEEC
Confidence            34555555555555553

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.56  E-value=7.8e-14  Score=124.02  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             EecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCC
Q 022113          159 MDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGV  237 (302)
Q Consensus       159 ~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~  237 (302)
                      +-+.+|+..+.....++.... ...+.+++.+.|.+++.+++++.|+++++|+++++||++|.|++++.|. ++.|+++|
T Consensus        74 ~~~~~p~~~~~~~~~~~~~~~-~~~~~i~~~a~i~~~a~ig~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~  152 (341)
T 3eh0_A           74 LVVKNPYLTYARMAQILDTTP-QPAQNIAPSAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGS  152 (341)
T ss_dssp             EECSCHHHHHHHHHHHHCCCC-CSCCSBCTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EEeCCHHHHHHHHHHHhcccC-CccCccCCCcEECCCcEECCCCEECCCcEECCCcEECCCcEECCCcEECCCCEECCCc
Confidence            345566654443333332211 1223444444444444444444444444444444444444444444442 33333333


Q ss_pred             EECCCcEE
Q 022113          238 RIKKHACI  245 (302)
Q Consensus       238 ~i~~~~~i  245 (302)
                      .|+++++|
T Consensus       153 ~I~~~~~I  160 (341)
T 3eh0_A          153 RLWANVTI  160 (341)
T ss_dssp             EECSSCEE
T ss_pred             EECCCcEE
Confidence            33333333

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.56  E-value=6.9e-14  Score=119.73  Aligned_cols=48  Identities=13%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             cCCcEECCCCEECCCcEECCCCEECCCcEE-------------e-ceEEccCCEECCCcEEe
Q 022113          199 HESAQIGEGCLIGPDVAVGPGCVVESGVRL-------------S-RCTVMRGVRIKKHACIS  246 (302)
Q Consensus       199 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-------------~-~~~i~~~~~i~~~~~i~  246 (302)
                      ++++.|+++|.|.++++||++|.|++++.|             . ++.|+++|.|++++.|.
T Consensus        34 G~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~   95 (259)
T 3hsq_A           34 QEGTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIH   95 (259)
T ss_dssp             CTTCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEE
T ss_pred             CCCCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEEC
Confidence            333333333333334444455555555555             2 34555555555555554

>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*

Probab=99.55  E-value=4.5e-14  Score=119.53  Aligned_cols=101  Identities=15%  Similarity=0.240  Sum_probs=84.9

Q ss_pred             cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCC--------CEEC
Q 022113          188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWH--------STVG  257 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~--------~~i~  257 (302)
                      +++.|++++.+++++.||++|.|+++++|+.++.||++|.|. +++|++++.||++|.|+. +++...        +.|+
T Consensus        90 ~~~~I~~~a~I~~~v~Ig~~~~I~~~s~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig  169 (240)
T 3r8y_A           90 IKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVE  169 (240)
T ss_dssp             CSSEECTTCEEBSSCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECCCCSCTTSCCCEEC
T ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCccCCCCCCcEEC
Confidence            347788888888888888899888889998889999999987 788888999999998864 666543        8888


Q ss_pred             CCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          258 QWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       258 ~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ++++|+.+++|.++++||++++|++++++..
T Consensus       170 ~~~~IG~~~~I~~~~~Ig~~~~I~~gsvV~~  200 (240)
T 3r8y_A          170 DDVVIGANVVVLEGVTVGKGAVVAAGAVVTE  200 (240)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CCCEECCCCEECCCcEECCCCEECCCCEECC
Confidence            8999988899989999999999988887654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.55  E-value=5.1e-14  Score=126.43  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=20.6

Q ss_pred             ceEEEeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhh
Q 022113           87 GVVVMEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDR  127 (302)
Q Consensus        87 g~v~~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~  127 (302)
                      ++..++++....+.|.++|+... .....++..+++++.+..
T Consensus        49 ~~~~~~~a~~~~l~fl~~~~~~~~~~~~~a~~~i~~~~~~~~   90 (372)
T 3pmo_A           49 GLATLQEAGPAQLSFLANPQYRKYLPESRAGAVLLTAADADG   90 (372)
T ss_dssp             EEECGGGCCTTSEEECCCGGGGGGGGGCCCSEEEECHHHHTT
T ss_pred             eecChhhCCCCeEEEECCHHHHHHHhcCCCcEEEEcHHHHhh
Confidence            33344443444556666665421 112345677777765543

>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*

Probab=99.55  E-value=7.5e-14  Score=119.94  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=67.3

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEE-------------ecc
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI-------------SSS  248 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i-------------~~~  248 (302)
                      ...+++++.|.+++.|++++.|+++|.|++++.||++|.|++++.|. ++.|+++|.|++++.|             .++
T Consensus         7 ~~~I~p~a~i~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~   86 (265)
T 4e6u_A            7 HDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGGFTRIGQNNEIFQFASVGEVCQDLKYKGEETWL   86 (265)
T ss_dssp             -CCBCTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEECSSEEECSSCEECTTCEEEECCCCTTCCSCCCEE
T ss_pred             CCeECCCCEECCCCEECCCCEECCCeEECCCCEECCCCEEcCCcEEeCCcEECCCCEEcCCcEECCccccccccCCCCeE
Confidence            35678888888888888888888888888888888888888888888 5889999999999998             357


Q ss_pred             EECCCCEECCCcEEc
Q 022113          249 IIGWHSTVGQWARVE  263 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~  263 (302)
                      +||+++.|+++++|.
T Consensus        87 ~IG~~~~Ig~~~~I~  101 (265)
T 4e6u_A           87 EIGNNNLIREHCSLH  101 (265)
T ss_dssp             EECSSCEECTTCEEE
T ss_pred             EECCCeEECCceEEC
Confidence            788888888777775

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.55  E-value=7.6e-14  Score=119.71  Aligned_cols=48  Identities=13%  Similarity=0.174  Sum_probs=26.2

Q ss_pred             eEEccCCEECCCcEEec--------cEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113          231 CTVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVHVCDEI  278 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i~~--------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~  278 (302)
                      +.|+++|.|+++++|..        ++||++++|++++.|..++.||+++.+++++
T Consensus        84 ~~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~  139 (262)
T 2qia_A           84 VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNA  139 (262)
T ss_dssp             EEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTC
T ss_pred             eEECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcc
Confidence            45555555555555532        5666666666666555555555444444433

>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*

Probab=99.55  E-value=8.3e-15  Score=130.00  Aligned_cols=151  Identities=20%  Similarity=0.212  Sum_probs=109.6

Q ss_pred             EEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc--CHH----HHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           17 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY--PFA----EMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        17 ~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~--~l~----~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      .++.|+.++||++++..|+..+..  ++.+++++||+++..  +|.    ++++.|.+.+..+|+.+.+..+...||++.
T Consensus        76 ~ii~e~~~~gta~ai~~a~~~~~~--~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~~~yG~I~  153 (336)
T 2x65_A           76 NIIAEPMKKNTAPACFIGTKLADD--DEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIE  153 (336)
T ss_dssp             GEEEESSCCCHHHHHHHHHTTSCT--TCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCCSSSEEEE
T ss_pred             eEEeCCCCCCcHHHHHHHHHhhCC--CCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCCCCceEEE
Confidence            457788899999999999886632  367899999997643  444    445557665677888887776778999998


Q ss_pred             EeCCC-----CcEEEEEecCCCCC--------CCeEEEEEEEeCHhhH-hhccCCCC--------------CccccchHH
Q 022113           91 MEEST-----GKVEKFVEKPKLFV--------GNKINAGIYLLNPAVL-DRIELRPT--------------SIEKEVFPK  142 (302)
Q Consensus        91 ~d~~~-----~~v~~~~ekp~~~~--------~~~~~~Giy~~~~~~l-~~l~~~~~--------------~~~~~~~~~  142 (302)
                      .++ +     +++..|.|||....        ..++++|+|+|+++.| +.++...+              ++..+.|+.
T Consensus       154 ~~~-~~~~~~~~V~~f~EKp~~~~a~~~~~~g~y~~n~Giy~~~~~~ll~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~  232 (336)
T 2x65_A          154 IGE-ELEEGVHKVAQFREKPDLETAKKFVESGRFLWNSGMFLWKAREFIEEVKVCEPSIYENLKDVDPRNFEELKKAYEK  232 (336)
T ss_dssp             EEE-EEETTEEEEEEEEESCCHHHHHHHHHHTCEEEEEEEEEEEHHHHHHHHHHHCHHHHHHHTTCCTTCHHHHHHHHHH
T ss_pred             ECC-ccCCCccEEEEEEECCChHHHHHHHhcCCeEEEeeeEEEEHHHHHHHHHHHCHHHHHHHHHhhhhhhhHHHHHHHh
Confidence            874 3     68999999996421        2589999999999876 44421000              111233343


Q ss_pred             ---------HHh-cCcEEEEEecCeeEecCChHHHHHH
Q 022113          143 ---------IAL-EGKLFAMVLPGFWMDIGQPRDYITG  170 (302)
Q Consensus       143 ---------l~~-~~~v~~~~~~g~~~digt~~~~~~a  170 (302)
                               +.+ ..++.+++++++|.|+|++++|+++
T Consensus       233 ~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~  270 (336)
T 2x65_A          233 VPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI  270 (336)
T ss_dssp             SCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred             CccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence                     233 4689999999999999999999887

>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*

Probab=99.54  E-value=1.1e-13  Score=118.41  Aligned_cols=98  Identities=9%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEE-------------CCCcEECCCCEECCCcEEe-------ceEEccCCEECCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLI-------------GPDVAVGPGCVVESGVRLS-------RCTVMRGVRIKKH  242 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i-------------~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~  242 (302)
                      .+.+.+++.|.+++.|++++.|+++|.|             .+.++||++|.|++++.|.       .+.|+++|.|+++
T Consensus        36 ~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~IG~~~~I~~~  115 (259)
T 3hsq_A           36 GTIIEGHVKICAGSEIGKFNRFHQGAVIGVMPQDLGFNQQLLTKTVIGDHNIFREYSNIHKGTKEDSPTVIGNKNYFMGN  115 (259)
T ss_dssp             TCEECTTCEECTTEEECSSCEECTTCEEEECCSCTTCCTTSCCCEEECSSCEECTTCEEECCSBTTBCEEECSSCEECTT
T ss_pred             CCEEcCCcEEcCCcEECCCcEECCCCEECCCcccccccCccCCcEEECCCcEECCCCEECCCccCCCcEEECCCcEEcCC
Confidence            3445555666666667777777777777             5667777888888888876       5666776666666


Q ss_pred             cEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          243 ACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       243 ~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      +.|. ++.|+++++|+.++.+..++.||+++.||.+++|
T Consensus       116 ~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~a~V  154 (259)
T 3hsq_A          116 SHVGHDCILGNNNILTHGAVLAGHVTLGNFAFISGLVAV  154 (259)
T ss_dssp             CEECTTCEECSSCEECTTCEECTTCEECSSCEECSSEEE
T ss_pred             cEECCCcEECCccEEcCCceECCccEECCCcEEeCCCEE
Confidence            6663 3555555555444444444444444444444333

>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}

Probab=99.54  E-value=8.3e-14  Score=121.71  Aligned_cols=89  Identities=20%  Similarity=0.208  Sum_probs=55.0

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEcc--------CCEECCCcEEe-ccEECCCCEECCCcEEccCcE
Q 022113          198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR--------GVRIKKHACIS-SSIIGWHSTVGQWARVENMTI  267 (302)
Q Consensus       198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~--------~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~  267 (302)
                      ++.++.||++|.|..+++||.+|.||++|.|. ++.|+.        ++.||++|.|+ +++|++++.||+++.|+.+++
T Consensus       171 I~~g~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~I~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~g~vIgagsv  250 (316)
T 3tk8_A          171 TNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVY  250 (316)
T ss_dssp             ECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTSCCCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             EeCCCEECCCCEEccceEECCCCEECCCCEEcCCCEECCCcccccCCCcEECCCCEECCCCEEcCCCEECCCCEEcCCCE
Confidence            33355666666666666777777777777765 455555        56666666663 366666666666666666666


Q ss_pred             ECCCcEECCce-------EEcCCeEe
Q 022113          268 LGEDVHVCDEI-------YSNGGVVL  286 (302)
Q Consensus       268 i~~~~~v~~~~-------~v~~~~v~  286 (302)
                      |+++++|++.+       .|++++++
T Consensus       251 V~~~t~I~d~~~~~v~~g~Vp~gsvV  276 (316)
T 3tk8_A          251 LGQSTKIYDRETGEVTYGRIPAGSVV  276 (316)
T ss_dssp             ECTTCCEEETTTCCEECSEECTTEEE
T ss_pred             EcCCeeecccccccccccEeCCCCEE
Confidence            66666555544       56666654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=99.53  E-value=1.5e-13  Score=123.33  Aligned_cols=103  Identities=23%  Similarity=0.375  Sum_probs=57.1

Q ss_pred             ccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------ceEEccCCEECCCcEEe-------------
Q 022113          187 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------RCTVMRGVRIKKHACIS-------------  246 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i~-------------  246 (302)
                      .+++.|+++++|++++.||++|+|+++++|++++.||++|.|.       ++.|+++|.|+++++|+             
T Consensus       135 g~~~~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~~g~~Ig~dgfg~~~~~g~~  214 (372)
T 3pmo_A          135 DPSASVGAYAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQSGAVIGGEGFGFANEKGVW  214 (372)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECTTCEEEECCCCEEEETTEE
T ss_pred             CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEeeeEECceeeccCCcEEecCcccccccCCcc
Confidence            3344444444444455555555555555555555555555554       34455555555555553             


Q ss_pred             -------ccEECCCCEECCCcEEc----cCcEECCCcEECCceEEcCCeEecCc
Q 022113          247 -------SSIIGWHSTVGQWARVE----NMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       247 -------~~~i~~~~~i~~~~~i~----~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                             +++||+++.||++++|.    .+++||+++.|+.++.+..++.++..
T Consensus       215 ~~i~~~g~v~IGd~v~IGa~~~I~~g~~~~t~IG~~~~I~~~v~I~~~v~IG~~  268 (372)
T 3pmo_A          215 QKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIGDH  268 (372)
T ss_dssp             EECCCCCCEEECSSCEECTTCEEECCSSSCEEECTTCEECTTCEECTTCEECTT
T ss_pred             eeccccCCeEECCCCEECCCcEEccCcccceEECCCCEECCCCEECCCCEECCC
Confidence                   46777777777777775    44666666666665555555554433

>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A

Probab=99.53  E-value=1.4e-13  Score=118.02  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=27.9

Q ss_pred             ECCCCEECCCcEEe--------ceEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEE
Q 022113          216 VGPGCVVESGVRLS--------RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHV  274 (302)
Q Consensus       216 ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v  274 (302)
                      ||++|.|++++.|.        ++.|+++|.|++++.| .++.|+++++|+.++.+..++.||+++.|
T Consensus        86 IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~Ig~~~~I~~~~~Ig~~~~i~~~~~i~~~v~Ig~~~~I  153 (262)
T 2qia_A           86 IGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAII  153 (262)
T ss_dssp             ECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEE
T ss_pred             ECCCceeCCCCEEcCCccCCCCcCEECCCcEEeeeeEECCCCEECCCeEECCcccccCCcEECCCcEE
Confidence            34444444444443        2556666666655555 33555555444444444333333333333

>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}

Probab=99.53  E-value=6.8e-14  Score=114.26  Aligned_cols=88  Identities=22%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEe------ccEECCCCEECCCcEEc
Q 022113          194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS------SSIIGWHSTVGQWARVE  263 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~------~~~i~~~~~i~~~~~i~  263 (302)
                      +.+.+++++.|++++.|.+++.||++|.|++++.|.    ++.|+++|.|++++.|.      +++|++++.|++++.| 
T Consensus        32 ~~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~I~~~~~~i~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i-  110 (191)
T 3ixc_A           32 VSPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGDVDKIEVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCIL-  110 (191)
T ss_dssp             BCCEECTTSEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEECC----CCEEECTTCEECTTCEE-
T ss_pred             CCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEecCCCCeEECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEE-
Confidence            445556666666666666677777777777777775    34788888888888886      7888888887777665 


Q ss_pred             cCcEECCCcEECCceEEcC
Q 022113          264 NMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       264 ~~~~i~~~~~v~~~~~v~~  282 (302)
                      .+++||++|.|++++++.+
T Consensus       111 ~~~~Ig~~~~Ig~~~~I~~  129 (191)
T 3ixc_A          111 HACTLGNNAFVGMGSIVMD  129 (191)
T ss_dssp             CSCEECTTCEECTTCEECT
T ss_pred             ECCEECCCCEECCCCEEeC
Confidence            2344554444444444333

>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1

Probab=99.53  E-value=1.2e-13  Score=118.82  Aligned_cols=41  Identities=29%  Similarity=0.473  Sum_probs=15.6

Q ss_pred             cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113          188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  228 (302)
                      +.+.|++++.|++++.|+++|.|++++.||++|.|++++.|
T Consensus         6 p~a~I~~~a~Ig~~~~Ig~~~~I~~~v~IG~~~~I~~~~~I   46 (270)
T 1j2z_A            6 KTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTL   46 (270)
T ss_dssp             TTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcEE
Confidence            33333333333333333333333333333333333333333

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.53  E-value=1.4e-13  Score=120.61  Aligned_cols=61  Identities=18%  Similarity=0.352  Sum_probs=28.0

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEE
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI  245 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i  245 (302)
                      .+++++.|.+++.|++++.|+++|+|++++.||++|.|++++.|. ++.|+++|.|+++++|
T Consensus         9 ~I~p~A~I~~~a~Ig~~v~Ig~~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I   70 (305)
T 3t57_A            9 LIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMTGAVV   70 (305)
T ss_dssp             CBCTTSEECTTSEECTTCEECTTCEECTTEEECTTCEECTTCEECSSEEECTTCEECTTCEE
T ss_pred             eECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCcEECCCcEECCCcEEccCcEe
Confidence            344445554444445444444444444444444444444444443 3334444444333333

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=99.52  E-value=1.6e-13  Score=122.65  Aligned_cols=13  Identities=8%  Similarity=0.112  Sum_probs=6.8

Q ss_pred             eeEecCChHHHHH
Q 022113          157 FWMDIGQPRDYIT  169 (302)
Q Consensus       157 ~~~digt~~~~~~  169 (302)
                      .+.-+.+|...+.
T Consensus        78 ~~i~~~~p~~~~~   90 (357)
T 4e79_A           78 NFIIVDNPYLAFA   90 (357)
T ss_dssp             EEEECSCHHHHHH
T ss_pred             cEEEECCHHHHHH
Confidence            3455566665443

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=99.51  E-value=1.9e-13  Score=121.57  Aligned_cols=33  Identities=15%  Similarity=0.021  Sum_probs=15.0

Q ss_pred             CcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhc
Q 022113           96 GKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus        96 ~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l  128 (302)
                      ..-+.|..+|+... .....++..+++++.+..+
T Consensus        36 ~~~i~fl~~~~~~~~~~~~~a~~~i~~~~~~~~~   69 (341)
T 3eh0_A           36 TGHITFMVNPKYREHLGLCQASAVVMTQDDLPFA   69 (341)
T ss_dssp             TTEEEECCCSSGGGGGGGCCCSEEEECTTTGGGC
T ss_pred             CCeEEEeCCHHHHHHHhhCCCCEEEECHHHhhhh
Confidence            34455555554321 1112345566666554443

>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A

Probab=99.51  E-value=1.6e-13  Score=110.31  Aligned_cols=84  Identities=17%  Similarity=0.124  Sum_probs=54.0

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec----eEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccC
Q 022113          195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR----CTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENM  265 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~  265 (302)
                      .+.+++++.|++++.|.+++.||++|.|++++.|..    +.|+++|.|++++.|.     +++|++++.|++++.| .+
T Consensus        12 ~~~ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i-~~   90 (173)
T 1xhd_A           12 KPKIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVIL-HS   90 (173)
T ss_dssp             CCEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEE-ES
T ss_pred             CCEECCCcEECCCCEEECCEEECCCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEE-eC
Confidence            444566666666666666677777777777777763    6788888888888886     6778887777766654 22


Q ss_pred             cEECCCcEECCceE
Q 022113          266 TILGEDVHVCDEIY  279 (302)
Q Consensus       266 ~~i~~~~~v~~~~~  279 (302)
                      ++||+++.|++++.
T Consensus        91 ~~Ig~~~~Ig~~~~  104 (173)
T 1xhd_A           91 CHIKKDALIGMGSI  104 (173)
T ss_dssp             CEECTTCEECTTCE
T ss_pred             CEECCCCEEcCCCE
Confidence            34444444433333

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.51  E-value=1.3e-13  Score=117.57  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=81.3

Q ss_pred             ceEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEecc--------------------
Q 022113          195 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS--------------------  248 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~--------------------  248 (302)
                      ++.|++++.|++++.|.  .+++||++|.|++++.|.    ++.|+++|.|++++.|.++                    
T Consensus        85 ~v~Ig~~~~I~~~~~i~~g~~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~v  164 (252)
T 3jqy_B           85 YVRIHKNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPIFDIHSKKRINWAKDI  164 (252)
T ss_dssp             EEEECTTCEEEEEEEEESSCEEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECSCSSCEEETTTCBBCCCCCCE
T ss_pred             eEEECCCCEECCceEEccCCEEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecCCCcccccccccccccccCCe
Confidence            44566666666666663  367899999999999998    8999999999999999774                    


Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccccc
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIKSS  294 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~~~  294 (302)
                      +||++|+||+++.|.+++.||++++|+++++|.    ++++   .|.+.++.+
T Consensus       165 ~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  217 (252)
T 3jqy_B          165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKDVPSMCAAAGNPAKIIKRN  217 (252)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             EEecCcEECCCCEECCCCEECCCCEECCCCEECcccCCCCEEEccCCEEEccC
Confidence            899999999999999999999999999999984    4443   366666654

>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*

Probab=99.51  E-value=1.7e-13  Score=118.22  Aligned_cols=75  Identities=9%  Similarity=0.285  Sum_probs=54.2

Q ss_pred             cEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          214 VAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ++||++|.|++++.|. ++.|++++.|++++.|. ++.|++++.|+.++.+..++.||+++.|++++.+..++.++.
T Consensus        71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~~~~IG~~~~I~~~~~I~~~~~ig~  147 (273)
T 3fs8_A           71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKD  147 (273)
T ss_dssp             EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECSSCEECTTCEECSSCEECSSCEECTTCEECTTCEECT
T ss_pred             eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECCCCEECccceeCCceEECCceEECCCCEECCCceeCC
Confidence            4555556666666664 67788888888888884 688888888888887777777777777777777766666554

>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A

Probab=99.51  E-value=2.7e-13  Score=116.80  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=14.3

Q ss_pred             CcEECCCCEECCCcEECCCCEECCCcEEe
Q 022113          201 SAQIGEGCLIGPDVAVGPGCVVESGVRLS  229 (302)
Q Consensus       201 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~  229 (302)
                      ++.||++|.|+++++|++++.||++|.|.
T Consensus       133 ~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~  161 (276)
T 3gos_A          133 GAFVDEGTMVDTWATVGSCAQIGKNVHLS  161 (276)
T ss_dssp             TCEECTTCEECTTEEECTTCEECTTCEEC
T ss_pred             CeEECCCCEECCCCEECCCCEECCCCEEC
Confidence            45555555554444444444444444444

>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}

Probab=99.50  E-value=2.2e-13  Score=118.59  Aligned_cols=91  Identities=18%  Similarity=0.160  Sum_probs=45.6

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEec---------------eEEccCCEECCCcEE-eccEECCCCEECCCc
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHACI-SSSIIGWHSTVGQWA  260 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~  260 (302)
                      ++++++.||++|.|.++++||++|.||++|.|..               ++|+++|.||++|.| .+++||++|+|++++
T Consensus       154 ~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~~~~~i~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~avIgags  233 (304)
T 3eg4_A          154 FVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGV  233 (304)
T ss_dssp             EECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCCCSSTTCCCCEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             EECCCCEECCCcEEcCCcEECCCCccCCCcEECCCCEECCccccCccCCeEEcCCCEECCCCEEcCCcEECCCcEECCCC
Confidence            3344556666665555555555555555555542               444444444444444 234455555555555


Q ss_pred             EEccCcEECCCc-------EECCceEEcCCeEec
Q 022113          261 RVENMTILGEDV-------HVCDEIYSNGGVVLP  287 (302)
Q Consensus       261 ~i~~~~~i~~~~-------~v~~~~~v~~~~v~~  287 (302)
                      .|.+++.|++++       .|++++++.+++++.
T Consensus       234 vV~~g~~Igd~~~g~~~~~~Ip~~svV~~Gs~v~  267 (304)
T 3eg4_A          234 FIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPG  267 (304)
T ss_dssp             EECTTCCEEETTTCCEECSEECTTEEEEEEEEEC
T ss_pred             EEcCCeEECccceeeeccCEeCCCCEEecCcEec
Confidence            554444444443       355555555555443

>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20

Probab=99.49  E-value=2.7e-14  Score=126.81  Aligned_cols=150  Identities=20%  Similarity=0.236  Sum_probs=106.5

Q ss_pred             EecCCCCCChHHHHHcHhhhcc-CCCCcEEEEeCCeecCc--CHHHHHHH----HHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113           19 SQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISEY--PFAEMIEF----HKAHGGEASIMVTKVDEPSKYGVVVM   91 (302)
Q Consensus        19 ~~~~~~~Gt~~al~~a~~~i~~-~~~~~~lv~~gD~l~~~--~l~~~~~~----~~~~~~~~~l~~~~~~~~~~~g~v~~   91 (302)
                      +.|+.++||++++..++. +.. +.++.+++++||+++..  +|.++++.    |.+ ++.+|+.+.+..++..||++..
T Consensus        76 i~e~~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~i~p~~~~t~yG~I~~  153 (337)
T 2cu2_A           76 LLEPLGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALGLRPTRPETEYGYIRL  153 (337)
T ss_dssp             EEESSCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEEECCSSCCSSSCEEEE
T ss_pred             EecCCCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEeeccCCCCCCceEEEE
Confidence            567788999999999987 521 11368999999997642  35554443    333 5678888888777789999988


Q ss_pred             eCCC----CcEEEEEecCCCCC------C-CeEEEEEEEeCHhhH-hhccCCCCCc------------cccchHH-----
Q 022113           92 EEST----GKVEKFVEKPKLFV------G-NKINAGIYLLNPAVL-DRIELRPTSI------------EKEVFPK-----  142 (302)
Q Consensus        92 d~~~----~~v~~~~ekp~~~~------~-~~~~~Giy~~~~~~l-~~l~~~~~~~------------~~~~~~~-----  142 (302)
                      ++ +    +++..|.|||....      . .++++|+|+|+++.| +.++...+..            ..+.|..     
T Consensus       154 ~~-~~~~~~~V~~f~EKp~~~~a~~~~~~g~~~n~Giy~f~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s  232 (337)
T 2cu2_A          154 GP-REGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYAGLPKIS  232 (337)
T ss_dssp             EE-EETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHHTSCCCC
T ss_pred             CC-cccccCeEEEEEeCCChHHHHHHhhcCCEEEEEEEEEeHHHHHHHHHHHCHHHHHHHHHHhcCCcHHHHHhhCccch
Confidence            74 4    78999999996421      1 689999999999877 5543111100            0122322     


Q ss_pred             ----HH-hcCcEEEEEecCeeEecCChHHHHHHH
Q 022113          143 ----IA-LEGKLFAMVLPGFWMDIGQPRDYITGL  171 (302)
Q Consensus       143 ----l~-~~~~v~~~~~~g~~~digt~~~~~~a~  171 (302)
                          +. +..++.+++++++|.|+|++++|+++.
T Consensus       233 idy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~  266 (337)
T 2cu2_A          233 IDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (337)
T ss_dssp             HHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             HHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHh
Confidence                23 346899999999999999999998873

>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*

Probab=99.49  E-value=1.4e-13  Score=125.23  Aligned_cols=85  Identities=21%  Similarity=0.269  Sum_probs=63.1

Q ss_pred             hccccccc----cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECC
Q 022113          178 LRKKSSLK----LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGW  252 (302)
Q Consensus       178 ~~~~~~~~----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~  252 (302)
                      ........    +++++.+.+++.+++++.|++++.|.+++.||++|.|++++.|. +++|+++|.|++++.|++++|++
T Consensus       223 ~~~~~~~~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~ig~~~~i~~~~i~~  302 (401)
T 2ggo_A          223 LDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIME  302 (401)
T ss_dssp             HHHTCCCEECSEECSSCEEESCEEECTTCEECTTCEEESSEEECTTCEECSSCEECTTEEECSSCEEEETCEEESEEECT
T ss_pred             HHhcccccccceeCCCCEEcCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCcEECCCCEECCCCEEecCEEcC
Confidence            34688553    56777777888888888888888887788888888888888776 67788888888888777777777


Q ss_pred             CCEECCCcEE
Q 022113          253 HSTVGQWARV  262 (302)
Q Consensus       253 ~~~i~~~~~i  262 (302)
                      ++.|++++.+
T Consensus       303 ~~~i~~~~~i  312 (401)
T 2ggo_A          303 GSKIPHLSYV  312 (401)
T ss_dssp             TCEEEESCEE
T ss_pred             CcEECCCceE
Confidence            7766555444

>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}

Probab=99.49  E-value=2.6e-13  Score=111.04  Aligned_cols=97  Identities=21%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             ecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEe-----------------ccEEC
Q 022113          193 VGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----------------SSIIG  251 (302)
Q Consensus       193 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----------------~~~i~  251 (302)
                      ++++.|+|++.|+++|.|+++++||++|.|++++.|.    +..|+++|.|+++++|.                 .++|+
T Consensus        10 ~~~v~I~~~a~I~~~a~I~g~V~IG~~~~I~~~~~I~~~~g~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~Ig   89 (194)
T 3tv0_A           10 QKSVKIAPGAVVCVESEIRGDVTIGPRTVIHPKARIIAEAGPIVIGEGNLIEEQALIINAYPDNITPDTEDPEPKPMIIG   89 (194)
T ss_dssp             --CEEECTTCEECTTSEEESSEEECTTCEECTTCEEEESSSCEEECTTCEECTTCEEEECCCSCC---------CCEEEC
T ss_pred             CCCCEECCCCEEcCCCEEeCCCEECCCCEECCCCEEccCCCCeEECCCccccCCcccccccccccccccccCcCCceEEC
Confidence            3455555666666666666666666666666666663    35677777777777663                 24566


Q ss_pred             CCCEEC-----------CCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          252 WHSTVG-----------QWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       252 ~~~~i~-----------~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      ++++|+           ++++|+.+++|+++++||++++|+++++|...
T Consensus        90 ~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~~~~IgagsvV~~~  138 (194)
T 3tv0_A           90 TNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTSGCIIGACCNLNTF  138 (194)
T ss_dssp             SSCEECTTCEECCSEECSSCEECTTCEECTTEEECSSCEECTTCEECCC
T ss_pred             CcceEecceeEeeeeecccceecceeeECCeEEECCCCEECCCCEECCC
Confidence            655544           55566666777777777777777777766543

>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*

Probab=99.48  E-value=2.3e-13  Score=112.32  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=59.7

Q ss_pred             cccccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccC---CEECCCcEEec-cEE------
Q 022113          184 LKLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG---VRIKKHACISS-SII------  250 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~---~~i~~~~~i~~-~~i------  250 (302)
                      ..+.+++.|++++.+..  ++.||++|.|+++++|++++.||++|.|. ++.|..+   +.||++|.|+. ++|      
T Consensus        33 ~~ig~~~~I~~~~~i~~~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~  112 (205)
T 3vbi_A           33 LSVGKNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDD  112 (205)
T ss_dssp             SEECSSEEEBTTSEEESGGGEEECSSEEECTTCEEEEEEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECC
T ss_pred             eEECCCCEECCCeEEccCCeeEECCCCEECCCCEEccceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCC
Confidence            44556666666666555  55566666666666665555555555555 3444322   55555555543 444      


Q ss_pred             -------------------CCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          251 -------------------GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       251 -------------------~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                                         ..++.||++++|+.+++|.++++|+++++|++++++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~Ig~~~~Ig~gsvV~~  169 (205)
T 3vbi_A          113 FSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKE  169 (205)
T ss_dssp             CSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSSCEECTTCEECTTCEECS
T ss_pred             cccccccCcccccccceeccCCEEECCCCEECCCCEEcCCCEECCCCEEcCCCEECC
Confidence                               34555666666666666666666666666666666543

>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}

Probab=99.48  E-value=6.7e-13  Score=116.23  Aligned_cols=16  Identities=25%  Similarity=0.692  Sum_probs=6.5

Q ss_pred             CcEECCCCEECCCcEE
Q 022113          213 DVAVGPGCVVESGVRL  228 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i  228 (302)
                      ++.||++|.|++++.|
T Consensus        55 ~~~IG~~~~I~~~a~I   70 (305)
T 3t57_A           55 NTELGESCVLMTGAVV   70 (305)
T ss_dssp             SEEECTTCEECTTCEE
T ss_pred             CcEECCCcEEccCcEe
Confidence            3334444444444433

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.47  E-value=4.1e-13  Score=111.72  Aligned_cols=87  Identities=11%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             eEEcCCcEECCCCEECC---CcEECCCCEECCCcEE----eceEEccCCEECCCcEEecc--------------------
Q 022113          196 VLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL----SRCTVMRGVRIKKHACISSS--------------------  248 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i----~~~~i~~~~~i~~~~~i~~~--------------------  248 (302)
                      +.|++++.|++++.|..   ++.||++|.|++.+.+    .+++|+++|.|+++++|.++                    
T Consensus        59 v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~~~h~~~~~~~~~~~~~~~~v  138 (215)
T 2wlg_A           59 LFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGKDV  138 (215)
T ss_dssp             EEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESCCSSCEEETTTCBBCCCCCCE
T ss_pred             EEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECCCCcccccccccccccCCCCe
Confidence            66666666666666642   3888999999885555    57899999999999999763                    


Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      +||++++||+++.|.+++.||+++.|++++++..
T Consensus       139 ~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~~  172 (215)
T 2wlg_A          139 IIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYK  172 (215)
T ss_dssp             EECTTCEECTTCEECTTCEECSSCEECTTCEECS
T ss_pred             EECCCcEECCCCEECCCCEECCCCEECCCCEEcC
Confidence            8999999999999999999999999999988754

>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A

Probab=99.46  E-value=2.5e-13  Score=110.44  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=18.4

Q ss_pred             EECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEE
Q 022113          203 QIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI  245 (302)
Q Consensus       203 ~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i  245 (302)
                      .|++++.|.+++.||++|.|++++.|.    ++.|+++|.|++++.|
T Consensus        23 ~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I   69 (187)
T 3r3r_A           23 MIDTSSVVIGDVRLADDVGIWPLVVIRGDVNYVAIGARTNIQDGSVL   69 (187)
T ss_dssp             EECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred             EECCCCEEECceEECCCCEECCCcEEEcCCccEEECCCCEECCCCEE
Confidence            333333333334444444444444443    1245555555555555

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.46  E-value=1.2e-13  Score=120.03  Aligned_cols=89  Identities=20%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             ceEEcCCcEECCCCEE--CCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccCc
Q 022113          195 NVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMT  266 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~  266 (302)
                      ++.|++++.||+++.|  +.+++||++|.||++|.|. ++.|++++.+++++.+.     +++||++|+||++++|.+++
T Consensus       163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv  242 (313)
T 3q1x_A          163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNI  242 (313)
T ss_dssp             CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSC
T ss_pred             CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCc
Confidence            3334444444444444  3344444444444444444 34455555555555543     45999999999999999999


Q ss_pred             EECCCcEECCceEEcCC
Q 022113          267 ILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       267 ~i~~~~~v~~~~~v~~~  283 (302)
                      +||++|.||++++|..+
T Consensus       243 ~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          243 IVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             EECSSEEECTTCEECSC
T ss_pred             EECCCCEECCCCEECCC
Confidence            99999999999997654

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=99.45  E-value=4.6e-13  Score=123.70  Aligned_cols=22  Identities=18%  Similarity=-0.001  Sum_probs=13.4

Q ss_pred             EEecCCCCCChHHHHHcHhhhc
Q 022113           18 CSQETEPLGTAGPLALARDKLI   39 (302)
Q Consensus        18 ~~~~~~~~Gt~~al~~a~~~i~   39 (302)
                      ...-+.|+=+...+...++...
T Consensus       101 v~~~D~P~i~~~~i~~l~~~~~  122 (456)
T 2v0h_A          101 VLYGDAPLITKETLEKLIEAKP  122 (456)
T ss_dssp             EEETTCTTCCHHHHHHHHHHCC
T ss_pred             EEcCCcceeCHHHHHHHHHHHh
Confidence            3333556666777777776653

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.45  E-value=3.9e-13  Score=119.24  Aligned_cols=130  Identities=17%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             ecCeeEecCC--hHHHHHHHHHHHHhhc---c-------cccccc--ccCceEecceEEcCCcEECCCCEECCC-cEECC
Q 022113          154 LPGFWMDIGQ--PRDYITGLRLYLDSLR---K-------KSSLKL--ATGANIVGNVLVHESAQIGEGCLIGPD-VAVGP  218 (302)
Q Consensus       154 ~~g~~~digt--~~~~~~a~~~~l~~~~---~-------~~~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~-~~ig~  218 (302)
                      ...+|.|.|+  |+.+......+...-+   .       .....+  .+++.|.+++.|++++.||+++.|+++ ++|+.
T Consensus       168 ~~~~Wt~~G~~~~~~f~~~~~~l~~~G~~~~~~~~dk~p~~~~~v~p~~gv~I~p~a~I~~~a~IG~gv~Ig~g~a~Ig~  247 (387)
T 2rij_A          168 SNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTRILESSKVRMGASLAAGTTIMPGASYVNF  247 (387)
T ss_dssp             CCEEEETTEEECHHHHHHHHHHHHHTTCCCCCCEEESSCBGGGTCCCCTTCEESCGGGBBTTCBCCTTCEECSSSCEECT
T ss_pred             ceeeeccCcccCHHHHHHHHHHHHhcCCccceeecccccchhccccCCCCEEEcCCCEECCCeEEcCCCEEeCCeeEECC
Confidence            4568999888  6777666554442110   0       000001  125566666666666666666666664 66666


Q ss_pred             CCE-ECCCcEE----e-ceEEccCCEECCCcEEe----c-----cEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          219 GCV-VESGVRL----S-RCTVMRGVRIKKHACIS----S-----SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       219 ~~~-i~~~~~i----~-~~~i~~~~~i~~~~~i~----~-----~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      ++. ||+ |.|    . +++|+++|.|++++.|.    +     ++||++|+||+++.  +++.||++|.|+++++|..+
T Consensus       248 nv~vIG~-~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IGagAv--~GV~IGdgavIGAGsVVt~d  324 (387)
T 2rij_A          248 NAGTTGA-CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLGANSV--TGIPLGDNCIVDAGIAVLEG  324 (387)
T ss_dssp             TCEESSC-CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEECTTCE--ECSCBCTTCEECTTCEECTT
T ss_pred             CcEEECC-EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEECCCCc--CCcEECCCCEECCCCEECCC
Confidence            666 665 554    3 57788888888888642    2     78999999999998  78999999999999999888


Q ss_pred             eEe
Q 022113          284 VVL  286 (302)
Q Consensus       284 ~v~  286 (302)
                      +.+
T Consensus       325 v~i  327 (387)
T 2rij_A          325 TKF  327 (387)
T ss_dssp             CEE
T ss_pred             cee
Confidence            854

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=99.45  E-value=5.6e-13  Score=123.25  Aligned_cols=61  Identities=18%  Similarity=0.397  Sum_probs=32.2

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI  245 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i  245 (302)
                      +.+++++.|.+++.||+++.|+++|.|. ++.||++|.|++++.|.++.|+++|.|++++.|
T Consensus       275 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i  335 (459)
T 4fce_A          275 ITIDTNVIIEGHVILGDRVRIGTGCVLK-NCVIGDDSEISPYTVLEDARLDANCTVGPFARL  335 (459)
T ss_dssp             CEECTTEEEEEEEEECTTCEECTTCEEE-SCEECTTCEECSSCEEESCEECTTCEECSSEEE
T ss_pred             cEECCCeeeccceEECCCCEECCCCEEe-ccEECCCCEECCCcEEeCCEECCCCEECCccEE
Confidence            3455555555555555555555555554 355555555555555554445554444444444

>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}

Probab=99.44  E-value=7.1e-13  Score=107.92  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=35.6

Q ss_pred             EcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEecc------------EECCCCEECCCcE
Q 022113          198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISSS------------IIGWHSTVGQWAR  261 (302)
Q Consensus       198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~------------~i~~~~~i~~~~~  261 (302)
                      +++++.|++++.|.+++.||++|.|++++.|.    ++.|+++|.|++++.|..+            +||++++|++++.
T Consensus        22 ig~~~~I~~~~~i~~~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~  101 (189)
T 3r1w_A           22 LGERVFVDRSSVIIGDVELGDDCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAM  101 (189)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCE
T ss_pred             ECCCcEECCCCEEeeeeEECCCCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCE
Confidence            44444444444444555555555555555553    2366666666666666443            6666665555554


Q ss_pred             E
Q 022113          262 V  262 (302)
Q Consensus       262 i  262 (302)
                      |
T Consensus       102 i  102 (189)
T 3r1w_A          102 L  102 (189)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=99.44  E-value=1.9e-12  Score=110.30  Aligned_cols=160  Identities=17%  Similarity=0.145  Sum_probs=115.9

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHc-CCcEEEEEEeCC-----
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAH-GGEASIMVTKVD-----   81 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~-~~~~~l~~~~~~-----   81 (302)
                      +.+|.++.+..++.+.||++ ++.++..+.....+.++++.||. +. +..+.++++.|.++ +.++++++.+..     
T Consensus        66 ~~~g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~  144 (256)
T 3tqd_A           66 EDFGAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDEL  144 (256)
T ss_dssp             HHTTCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHH
T ss_pred             HHcCCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHh
Confidence            35789998888888899987 78888877421237899999999 44 55699999999775 456777777763     


Q ss_pred             -CCCCcceEEEeCCCCcEEEEEecCC-CC-------------CCCeEEEEEEEeCHhhHhhccCCCCC-ccc----cchH
Q 022113           82 -EPSKYGVVVMEESTGKVEKFVEKPK-LF-------------VGNKINAGIYLLNPAVLDRIELRPTS-IEK----EVFP  141 (302)
Q Consensus        82 -~~~~~g~v~~d~~~~~v~~~~ekp~-~~-------------~~~~~~~Giy~~~~~~l~~l~~~~~~-~~~----~~~~  141 (302)
                       +|..++ +.+|+ +|+++.|.++|. .+             .+.+.+.|+|.|++++|+.+.....+ ++.    +.+.
T Consensus       145 ~~p~~vk-vv~d~-~g~~l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l~~s~lE~~e~leqlr  222 (256)
T 3tqd_A          145 FNPHSTK-VVLNR-RNYALYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLSWDACPAEKMEALEQLR  222 (256)
T ss_dssp             TCTTSCE-EEECT-TSBEEEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHH
T ss_pred             hCCCccE-EEECC-CCEEeEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHhCCCCcccchhhhHHHH
Confidence             344444 45775 899999999874 11             14689999999999999877533222 111    2234


Q ss_pred             HHHhcCcEEEEEecCe-eEecCChHHHHHHHH
Q 022113          142 KIALEGKLFAMVLPGF-WMDIGQPRDYITGLR  172 (302)
Q Consensus       142 ~l~~~~~v~~~~~~g~-~~digt~~~~~~a~~  172 (302)
                      .+....++.++..+++ |.+|+||+||.++.+
T Consensus       223 ~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~  254 (256)
T 3tqd_A          223 ILWHGGRIHMVVAKSKCPPGVDTEEDLERVRA  254 (256)
T ss_dssp             HHHTTCCCEEEECSSCCCCCCSSHHHHHHHHT
T ss_pred             HHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHH
Confidence            4556678999988875 899999999988753

>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A

Probab=99.44  E-value=9.5e-13  Score=109.31  Aligned_cols=67  Identities=10%  Similarity=0.027  Sum_probs=43.6

Q ss_pred             cEECCCCEECCCcEEec-eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          214 VAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      ++||++|.|++++.|.. +.|+++|.||.++.|.+++|+++++|++++.+ .+++|++++.|++++++.
T Consensus       112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V-~~~~i~~~~~v~~~~vv~  179 (213)
T 3kwd_A          112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLI-QDVEIPPGKYVPSGMVIT  179 (213)
T ss_dssp             EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEE-ESCEECTTBEECTTCEEC
T ss_pred             eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEE-CCcEeCCCCEECCCcEEc
Confidence            55666666666666664 67777777777777766667777777777666 455666666665555554

>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A

Probab=99.43  E-value=1.1e-12  Score=105.42  Aligned_cols=15  Identities=13%  Similarity=0.122  Sum_probs=6.3

Q ss_pred             eEEccCCEECCCcEE
Q 022113          231 CTVMRGVRIKKHACI  245 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i  245 (302)
                      +.|+++|.|++++.|
T Consensus        50 ~~IG~~~~I~~~~~I   64 (173)
T 1v3w_A           50 IYVGKYSNVQDNVSI   64 (173)
T ss_dssp             EEECTTCEECTTCEE
T ss_pred             EEECCCCEECCCcEE
Confidence            334444444444444

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.43  E-value=8.1e-13  Score=108.16  Aligned_cols=37  Identities=14%  Similarity=0.084  Sum_probs=31.6

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      +++||++|+||+++.|.+++.||+++.|+++++|..+
T Consensus       132 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  168 (195)
T 3nz2_A          132 PIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVNQD  168 (195)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CeEECCCCEEcCCCEECCCCEECCCCEECCCCEEccc
Confidence            4689999999999999999999999999999886543

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.43  E-value=2.2e-12  Score=104.89  Aligned_cols=52  Identities=15%  Similarity=0.122  Sum_probs=41.5

Q ss_pred             EEccCCEECCCcEE-------------------eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          232 TVMRGVRIKKHACI-------------------SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       232 ~i~~~~~i~~~~~i-------------------~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      .||++|.|+++++|                   ..++||++|+||+++.|.++++||+++.|+++++|..+
T Consensus        98 ~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  168 (188)
T 3srt_A           98 EIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGDNVWIGGGVIITPGITIGDNVVIGAGSVVTKD  168 (188)
T ss_dssp             EECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSCEECTTCEECTTCEECSSEEECTTCEECSC
T ss_pred             EECCeeEECCCcEEeeCCccCchhhccccceECCCcEECCCcEEcCCCEECCCcEECCCCEECCCCEECcc
Confidence            56777777777776                   35788999999999988888888888888888887654

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=99.43  E-value=9.6e-13  Score=112.67  Aligned_cols=163  Identities=13%  Similarity=0.056  Sum_probs=118.7

Q ss_pred             hhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCc
Q 022113            9 EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY   86 (302)
Q Consensus         9 ~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~   86 (302)
                      -+.+|.++.+..++.+.||++ +..++..+.....+.++++.||. + .+..+.++++.|.+.++++++++.+..++..|
T Consensus        74 ~~~~g~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~  152 (264)
T 3k8d_A           74 VEAAGGEVCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEA  152 (264)
T ss_dssp             HHHTTCEEEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHH
T ss_pred             HHHcCCEEEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHc
Confidence            345788888877888899987 78888777421237899999999 3 45669999999988788899999988765433


Q ss_pred             c-----eEEEeCCCCcEEEEEecCCC-C------------CCCeEEEEEEEeCHhhHhhccCCCCC-cc----ccchHHH
Q 022113           87 G-----VVVMEESTGKVEKFVEKPKL-F------------VGNKINAGIYLLNPAVLDRIELRPTS-IE----KEVFPKI  143 (302)
Q Consensus        87 g-----~v~~d~~~~~v~~~~ekp~~-~------------~~~~~~~Giy~~~~~~l~~l~~~~~~-~~----~~~~~~l  143 (302)
                      +     -+.+|+ +|+++.|.++|.- +            ...+.++|+|+|++++|+.+.....+ ++    -+.+..+
T Consensus       153 ~~p~~vkVv~d~-~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~~~lE~~e~leqlr~l  231 (264)
T 3k8d_A          153 FNPNAVKVVLDA-EGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVL  231 (264)
T ss_dssp             TCTTSCEEEECT-TSBEEEEESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCCCHHHHHHTCTTHHHH
T ss_pred             cCCCceEEEECC-CCeEEEEecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCCChhhhHHHHHHHHHH
Confidence            2     245675 8999999999741 1            24689999999999999876432222 11    1223444


Q ss_pred             HhcCcEEEEEe-cCeeEecCChHHHHHHHHH
Q 022113          144 ALEGKLFAMVL-PGFWMDIGQPRDYITGLRL  173 (302)
Q Consensus       144 ~~~~~v~~~~~-~g~~~digt~~~~~~a~~~  173 (302)
                      .+..++.++.. ..+|.+|+||+++..+...
T Consensus       232 e~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~  262 (264)
T 3k8d_A          232 WYGEKIHVAVAQEVPGTGVDTPEDLERVRAE  262 (264)
T ss_dssp             HTTCCEEEEECSCCCSCCCCSHHHHHHHHHH
T ss_pred             HCCCceEEEEeCCCCCCCCCCHHHHHHHHHH
Confidence            55668888765 4468999999999988653

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.43  E-value=2e-12  Score=105.45  Aligned_cols=36  Identities=17%  Similarity=0.148  Sum_probs=30.7

Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      ++||++|+||+++.|.+++.||++|+|+++++|..+
T Consensus       135 v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~d  170 (190)
T 3hjj_A          135 VKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTKD  170 (190)
T ss_dssp             EEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             eEECCCCEECCCCEECCCCEECCCCEECCCCEECcc
Confidence            678999999999999888999999999998887543

>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}

Probab=99.42  E-value=2.8e-12  Score=111.12  Aligned_cols=69  Identities=14%  Similarity=0.042  Sum_probs=36.6

Q ss_pred             CCCCEECCCcEEec--------eEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113          217 GPGCVVESGVRLSR--------CTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV  285 (302)
Q Consensus       217 g~~~~i~~~~~i~~--------~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v  285 (302)
                      |++|.|++++.|.+        +.|+++|.|++++.| .+++|+++++|+.++.+..++.||+++.||.+++|.+++.
T Consensus       104 G~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~~~v~Igd~~~Ig~~a~V~~~v~  181 (283)
T 4eqy_A          104 GDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMAGHVEIGDWAIVGGMSGVHQYVR  181 (283)
T ss_dssp             CSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             CCCcccCcceeEccceecCCCceEECCCcEECceeEEcCCcEECCCcEECCCceEcCCcEECCCeEEecCCEEcCCeE
Confidence            44444444444442        556666666666655 3455555555555555555555555555555555444443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.41  E-value=1.3e-12  Score=114.98  Aligned_cols=100  Identities=16%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCc------------------
Q 022113          182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA------------------  243 (302)
Q Consensus       182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~------------------  243 (302)
                      ..+.+.+++.|.+++.|+++++|+++|.|+ +|+|++++.|+++++|.+++|+++|.|+.++                  
T Consensus        70 ~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~s~I~~~~~~~~~~  148 (334)
T 2pig_A           70 AGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEILAIQGLTHEH  148 (334)
T ss_dssp             TTCEECTTCEEESSCEEESSCEECTTCEEE-SCEEESSCEECTTCEEESCEEESSEEECTTCEEESSCEEEC--------
T ss_pred             CCcEECCCcEEeeeeeECCCcEECCCCEEE-eEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCCEEEeecceeeccc
Confidence            345566677777777777777777777776 7777888888877777766665555544443                  


Q ss_pred             ----------EEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          244 ----------CISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       244 ----------~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                                ++.+++|+++|.|++++.|+ +++|++++.|++++.+..+
T Consensus       149 ~~g~~I~~~a~I~~s~I~~g~~I~~~a~I~-~svI~~~a~I~~~a~V~~~  197 (334)
T 2pig_A          149 AQILQIYDRATVNHSRIVHQVQLYGNATIT-HAFIEHRAEVFDFALIEGD  197 (334)
T ss_dssp             CCCEEECTTCEEESCEEETTCEECTTCEEE-SEEECTTCEECTTCEEECC
T ss_pred             CCCeEECCCCEEeccEEcCCCEEcCCeEEe-CcEEcCCCEECCCcEECCc
Confidence                      33445555555566666654 4566666666666555444

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=99.41  E-value=1.6e-12  Score=120.56  Aligned_cols=24  Identities=25%  Similarity=0.134  Sum_probs=13.8

Q ss_pred             EEEEecCCCCCChHHHHHcHhhhc
Q 022113           16 IICSQETEPLGTAGPLALARDKLI   39 (302)
Q Consensus        16 i~~~~~~~~~Gt~~al~~a~~~i~   39 (302)
                      +-...-+.|+=+...+...++...
T Consensus       105 vlv~~~D~P~i~~~~i~~l~~~~~  128 (468)
T 1hm9_A          105 TLVIAGDTPLITGESLKNLIDFHI  128 (468)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHHHH
T ss_pred             EEEEeCCccccCHHHHHHHHHHHH
Confidence            333344556556677777766553

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.41  E-value=1e-12  Score=107.93  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~  292 (302)
                      .++||++|+||.++.|.+++.||+++.|+++++|..    +++   .|++.++
T Consensus       130 ~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~dvp~~~v~~G~Pak~i~  182 (199)
T 3ftt_A          130 PIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVR  182 (199)
T ss_dssp             CEEECSSEEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEE
T ss_pred             CeEEcCCcEEcCCCEECCCCEECCCCEECCCCEECcccCCCCEEEEECCEEEe
Confidence            457899999999999988999999999999888754    333   3666554

>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*

Probab=99.41  E-value=3.3e-12  Score=114.97  Aligned_cols=15  Identities=20%  Similarity=0.266  Sum_probs=9.5

Q ss_pred             eEEccCCEECCCcEE
Q 022113          231 CTVMRGVRIKKHACI  245 (302)
Q Consensus       231 ~~i~~~~~i~~~~~i  245 (302)
                      +.|+++|.||++++|
T Consensus       229 v~Ig~~v~IG~~~~I  243 (374)
T 2iu8_A          229 VIIEDDVEIGANTTI  243 (374)
T ss_dssp             EEECTTCEECTTCEE
T ss_pred             EEECCCCEECCCcEE
Confidence            556666666666655

>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A

Probab=99.41  E-value=1.9e-12  Score=109.91  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=80.5

Q ss_pred             cccccCceEecce----EEcCCcEECCCCEECC-----------------------CcEECCCCEECCCcEEec-eEEcc
Q 022113          184 LKLATGANIVGNV----LVHESAQIGEGCLIGP-----------------------DVAVGPGCVVESGVRLSR-CTVMR  235 (302)
Q Consensus       184 ~~~~~~~~i~~~~----~i~~~~~i~~~~~i~~-----------------------~~~ig~~~~i~~~~~i~~-~~i~~  235 (302)
                      ..+.+++.|.++.    .||+++.|+++|.|.+                       +++||++|.|+++|.|.. ++|++
T Consensus        84 ~~I~~~~~I~~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~g~~~~~~~~~~~~~~~~v~IG~~v~Ig~~~~I~~~~~Ig~  163 (247)
T 1qre_A           84 VMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGD  163 (247)
T ss_dssp             CEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEEECTTCEECTTCEEEEEEEECT
T ss_pred             CEECCCcEEecCCCCCEEECCCCEECCCeEEEecccccccCcccccceeeccCccCceEECCCCEECCCCEEcCCcEECC
Confidence            4455566665533    7888888888888864                       389999999999999997 99999


Q ss_pred             CCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          236 GVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       236 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      +|.||.++.|.++.|+++++|++++.+ +++.|++++.|++++++..
T Consensus       164 ~v~IG~~a~I~~v~Ig~~~~IgagsvV-~~~~I~~~~~v~~g~vv~~  209 (247)
T 1qre_A          164 DTFIGMQAFVFKSKVGNNCVLEPRSAA-IGVTIPDGRYIPAGMVVTS  209 (247)
T ss_dssp             TCEECTTCEEEEEEECTTCEECTTCEE-ESCEECTTBEECTTCEECS
T ss_pred             CCEECCCCEEeceEECCCCEECCCCEE-CCeEeCCCCEECCCCEEec
Confidence            999999999977889999999999988 7788888888877777753

>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}

Probab=99.39  E-value=1.1e-12  Score=120.88  Aligned_cols=95  Identities=13%  Similarity=0.171  Sum_probs=75.1

Q ss_pred             cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcE
Q 022113          194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH  273 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~  273 (302)
                      ....+++++.|++++++.+++.||++|.|++++.|.+++|+++|.|+++|+|.+++||++|+|++++.| .+++||++|.
T Consensus       272 ~~~~I~~~a~I~p~a~i~g~v~IG~~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I-~gv~IGd~v~  350 (496)
T 3c8v_A          272 SGAGSASGASVSGYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKI-INAHLGDMIF  350 (496)
T ss_dssp             ----CCTTCEECTTSEEESSCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEE-ESEEEEETCE
T ss_pred             cCcccCCCcEECCCcEEeCCeEECCCCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEE-cCceECCCcE
Confidence            345667778888888888888999999999999999999999999999999999999999999998887 3477777777


Q ss_pred             ECCceEEcCC----eEecCc
Q 022113          274 VCDEIYSNGG----VVLPHK  289 (302)
Q Consensus       274 v~~~~~v~~~----~v~~~~  289 (302)
                      ||++++|.++    ++++..
T Consensus       351 IG~~a~I~~~~~~~v~IG~~  370 (496)
T 3c8v_A          351 TGFNSFLQGSESSPLKIGDG  370 (496)
T ss_dssp             ECTTCEEECCSSSCEEECTT
T ss_pred             ECCCCEEeCCCCcceEECCC
Confidence            7776666666    555443

>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A

Probab=99.39  E-value=3.1e-12  Score=112.63  Aligned_cols=81  Identities=20%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             ccCceEec-ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccC
Q 022113          187 ATGANIVG-NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM  265 (302)
Q Consensus       187 ~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~  265 (302)
                      ..+++|.+ ++.+++++.|+++|.|++++.||++|.|+++|.|.+|.|++++.|+++++|.++++++++.|+.++++.++
T Consensus        56 ~~~~~I~~~~a~I~~~a~I~~~~~I~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~I~~~s~I~~s~I~~~~~I~~~~~i~~~  135 (334)
T 2pig_A           56 QGDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDARVLNQ  135 (334)
T ss_dssp             SSSCEECCTTCEEETTCEECTTCEEESSCEEESSCEECTTCEEESCEEESSCEECTTCEEESCEEESSEEECTTCEEESS
T ss_pred             CCceEEcCCCeEEcCCcEECCCcEEeeeeeECCCcEECCCCEEEeEEEcCCCEEeCCcEEeccEEcCCeEEecCCEEeCC
Confidence            45578888 88899999999999999999999999999999999999999999999999998887777776666655444


Q ss_pred             cE
Q 022113          266 TI  267 (302)
Q Consensus       266 ~~  267 (302)
                      +.
T Consensus       136 s~  137 (334)
T 2pig_A          136 SE  137 (334)
T ss_dssp             CE
T ss_pred             EE
Confidence            33

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.37  E-value=8.4e-13  Score=110.14  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=39.6

Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccccc
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIKSS  294 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~~~  294 (302)
                      ++++||++|+||+++.|.+++.||+++.|+++++|.    ++++   .|++.++.+
T Consensus       118 g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~dVp~~~vv~G~PAk~ir~r  173 (220)
T 4hur_A          118 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  173 (220)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEcccCCCCcEEeCCCCEeehhc
Confidence            457899999999999999999999999999999975    4444   467776654

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.36  E-value=4.1e-12  Score=104.20  Aligned_cols=46  Identities=17%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIK  292 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~  292 (302)
                      +++||++|+||+++.|.++++||+++.|+++++|..    +++   .|++.++
T Consensus       131 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~dvp~~~vv~G~PArvik  183 (203)
T 1krr_A          131 PITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIR  183 (203)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEE
T ss_pred             CcEECCCeEECCCCEEeCCeEECCCCEECCCCEECCCcCCCcEEEccCcEEec
Confidence            478899999999999988999999999999988654    333   3555554

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.35  E-value=3.5e-12  Score=103.35  Aligned_cols=37  Identities=14%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      +++||++|+||+++.|.++++||+++.|+++++|..+
T Consensus       130 ~v~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~~~  166 (185)
T 2p2o_A          130 PVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKD  166 (185)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CeEEcCCeEECCCCEECCCCEECCCCEECCCCEECCC
Confidence            4788888888888888888888888888888887644

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.35  E-value=3.7e-12  Score=102.91  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      +++||++|+||+++.|.+++.||+++.|+++++|..+
T Consensus       128 ~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV~~d  164 (182)
T 1ocx_A          128 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD  164 (182)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CeEEeCCeEECCCCEECCCcEECCCCEECCCCEECCc
Confidence            5788888888888888888888888888888886544

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.34  E-value=2.2e-12  Score=110.47  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             ceEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEeceEEccCCEECCCcE---EeccEECCCCEECCCcEEccCcEEC
Q 022113          195 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILG  269 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~i~  269 (302)
                      ++.|+++++||+++.|+  .+++||++|+||++|.|.     +++.|+....   ...++||++|+||++++|.++++||
T Consensus       164 gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~-----~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG  238 (287)
T 3mc4_A          164 QTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSIL-----HGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVG  238 (287)
T ss_dssp             CCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEE-----TTCEEEC-----CCCSCEECTTCEECTTCEEESSCEEC
T ss_pred             CeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEc-----CCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEEC
Confidence            34444555555555554  344555555555444432     2222222111   1236788888888888888888888


Q ss_pred             CCcEECCceEEcC----CeE---ecCccccc
Q 022113          270 EDVHVCDEIYSNG----GVV---LPHKEIKS  293 (302)
Q Consensus       270 ~~~~v~~~~~v~~----~~v---~~~~~~~~  293 (302)
                      ++|+||++++|..    +++   .|++.++.
T Consensus       239 ~~a~IGagsvV~kdVp~~svvvG~PAkii~~  269 (287)
T 3mc4_A          239 QCSKIAAGSVVLKSVPHNVTVAGVPARIIGE  269 (287)
T ss_dssp             TTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             CCCEECCCCEEccccCCCCEEEccCCEEeCc
Confidence            8888888887653    333   36666553

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=99.34  E-value=4.4e-12  Score=118.65  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             ccCceEecceEEcCCcEECCCCEEC-----CCcEECCCCEECCCcEEeceEEccCCEECCCcEEec--------cEECCC
Q 022113          187 ATGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS--------SIIGWH  253 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~--------~~i~~~  253 (302)
                      .+++.+++.+++.+++.|++++.|+     .+++||++|.|+..+.|.+++|+++|.||+++.+.+        ++||++
T Consensus       338 g~~~~ig~~~~i~~~~~i~~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n~dg~~~~~t~IGd~  417 (501)
T 3st8_A          338 GDGAAVGPFTYLRPGTALGADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVNYDGTSKRRTTVGSH  417 (501)
T ss_dssp             CTTCEECSSEEECTTCEECTTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEECBCSSSBCCEEECTT
T ss_pred             ccccccCCceeecCCcEEccccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEcccCCcccCCEECCC
Confidence            3444445555555555555555444     367888888888888888999999999999998843        889999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      |.||.++.|.+++.||+++.|++|++|..+
T Consensus       418 ~~iG~~~~l~~~v~Ig~~~~i~ags~v~~d  447 (501)
T 3st8_A          418 VRTGSDTMFVAPVTIGDGAYTGAGTVVRED  447 (501)
T ss_dssp             CEECTTCEEESSEEECTTCEECTTCEECSC
T ss_pred             cEECCCCEEcCCcEECCCCEECCCCEECcc
Confidence            999999999999999999999999887543

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.33  E-value=3.6e-12  Score=110.58  Aligned_cols=89  Identities=20%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             cceEEcCCcEECCCCEE--CCCcEECCCCEECCCcEEe-ceEEccCCEECCC------cEEeccEECCCCEECCCcEEcc
Q 022113          194 GNVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH------ACISSSIIGWHSTVGQWARVEN  264 (302)
Q Consensus       194 ~~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~------~~i~~~~i~~~~~i~~~~~i~~  264 (302)
                      .++.|++++.||+++.|  +.+++||++|.||++|.|. ++.|++++...+.      ..-.+.+||++|+||++++|.+
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~  268 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILG  268 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEES
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECC
Confidence            34445555555555555  4455555555555555443 2333333311100      1113468899999999999988


Q ss_pred             CcEECCCcEECCceEEcC
Q 022113          265 MTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       265 ~~~i~~~~~v~~~~~v~~  282 (302)
                      +++||++++||++++|..
T Consensus       269 gv~IGd~a~IGagsvV~~  286 (310)
T 3f1x_A          269 RVTIGKGATVGGNIWVTE  286 (310)
T ss_dssp             SCEECTTCEECSSCEECS
T ss_pred             CcEECCCCEECCCCEECC
Confidence            999999999999988764

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=99.30  E-value=3.1e-11  Score=102.61  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=115.6

Q ss_pred             HHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcC-CcEEEEEEeC---
Q 022113            7 EFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHG-GEASIMVTKV---   80 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~-~~~~l~~~~~---   80 (302)
                      ++.+.+|.++.+..++.+.||. ++..++..+.....+.++++.||. +. +..+.++++.|.+.. ..++.++.+.   
T Consensus        56 ~~~~~~g~~v~~~~~~~~~Gt~-~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~  134 (253)
T 4fcu_A           56 EICRAEGVDVVLTSADHPSGTD-RLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHAL  134 (253)
T ss_dssp             HHHHTTTCCEEECCTTCCCHHH-HHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCH
T ss_pred             HHHHHcCCeEEEeCCCCCChHH-HHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCH
Confidence            3345578888777777788884 788888877521236789999999 55 456999999998763 3444444442   


Q ss_pred             ---CCCCCcceEEEeCCCCcEEEEEecCC----C---------CCCCeEEEEEEEeCHhhHhhccCCCCC-cc----ccc
Q 022113           81 ---DEPSKYGVVVMEESTGKVEKFVEKPK----L---------FVGNKINAGIYLLNPAVLDRIELRPTS-IE----KEV  139 (302)
Q Consensus        81 ---~~~~~~g~v~~d~~~~~v~~~~ekp~----~---------~~~~~~~~Giy~~~~~~l~~l~~~~~~-~~----~~~  139 (302)
                         .+|+.++ +.+|+ +|+++.|.++|-    .         +...+.++|+|+|++++|..+.....+ ++    -+.
T Consensus       135 ~~~~~p~~~k-vv~d~-~g~~l~fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~~~~~~le~~e~le~  212 (253)
T 4fcu_A          135 DEFQRDSIVK-VVMSK-QNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVTWEMGKLEKLESLEQ  212 (253)
T ss_dssp             HHHHCTTSCE-EEECT-TSBEEEEESSCCSCCTTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTTSCCCHHHHHHTCTT
T ss_pred             HHccCCCccE-EEECC-CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEEeCHHHHHHHHhCCCCcccchhHHHH
Confidence               4566655 45665 799999998763    1         124578999999999999877532221 11    122


Q ss_pred             hHHHHhcCcEEEEEecCe-eEecCChHHHHHHHHHH
Q 022113          140 FPKIALEGKLFAMVLPGF-WMDIGQPRDYITGLRLY  174 (302)
Q Consensus       140 ~~~l~~~~~v~~~~~~g~-~~digt~~~~~~a~~~~  174 (302)
                      +..+....++.++..+++ |.+++||+++.+++..+
T Consensus       213 lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l  248 (253)
T 4fcu_A          213 LRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMP  248 (253)
T ss_dssp             HHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSC
T ss_pred             HHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence            333445678999999999 99999999999886543

>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*

Probab=99.30  E-value=6.1e-11  Score=96.56  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=36.5

Q ss_pred             EEccCCEECCCcEEec-------------cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          232 TVMRGVRIKKHACISS-------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       232 ~i~~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      .||++|.|++++.|..             ..++..+.||++++|+.+++|.++++||++++|+++++|..
T Consensus       100 ~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~~  169 (190)
T 3hjj_A          100 RIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGDNAVIASGAVVTK  169 (190)
T ss_dssp             EECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             EECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECc
Confidence            4555555555555532             34456667777777777777777777777777777776653

>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A

Probab=99.29  E-value=5e-12  Score=109.08  Aligned_cols=31  Identities=10%  Similarity=0.142  Sum_probs=15.1

Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |.||.++.|  +++|+.+|+||.+++|..++.|
T Consensus       263 v~IGAnAtI--GVtIGd~~iIGAGSVVtkdt~I  293 (347)
T 3r5d_A          263 CLIGANAGI--GIPLGDRNIVEAGLYITAGTKV  293 (347)
T ss_dssp             CEECTTCEE--CSCBCTTCEECTTCEECTTCEE
T ss_pred             CEECCCCEE--eeEECCCCEECCCCEECCCCEE
Confidence            444444444  4444444555555555555444

>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*

Probab=99.29  E-value=2.7e-11  Score=103.80  Aligned_cols=32  Identities=3%  Similarity=0.099  Sum_probs=17.9

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCCc
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDV  214 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~  214 (302)
                      ...+++.+.|++.+.|++++.|+++++|..++
T Consensus       161 gv~I~P~AvI~~gA~IGeGv~Igp~~fVniga  192 (332)
T 3fsy_A          161 GVRIADADRVRLGAHLAPGTTVMHEGFVNYNA  192 (332)
T ss_dssp             TCEESCGGGBBTTEEECTTCEECTTCEECTTE
T ss_pred             CcEECCcCEECCCCEECCCCEEccccEEEECC
Confidence            34555666666666666666666555554433

>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*

Probab=99.28  E-value=2.5e-11  Score=103.50  Aligned_cols=151  Identities=14%  Similarity=0.207  Sum_probs=99.2

Q ss_pred             HHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEeCCCC-C
Q 022113            7 EFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKVDEP-S   84 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~-~   84 (302)
                      ++.+.|++++.+..+...+||+++++.|++++     +++++++||+++..+ +.+++    +.+  ..+.+ ...++ .
T Consensus        87 ~~~~~~~~~iv~~~~~~~~g~~~al~~a~~~~-----~~~lv~~~D~~~~~~~~~~~~----~~~--~~~t~-~~~~~~~  154 (254)
T 1jyk_A           87 YLKEKYGVRLVFNDKYADYNNFYSLYLVKEEL-----ANSYVIDADNYLFKNMFRNDL----TRS--TYFSV-YREDCTN  154 (254)
T ss_dssp             HHHHHHCCEEEECTTTTTSCTHHHHHTTGGGC-----TTEEEEETTEEESSCCCCSCC----CSE--EEEEC-EESSCSS
T ss_pred             HHHHhCCcEEEECCCccCCCcHHHHHHHHHHC-----CCEEEEeCCcccCHHHHHHHH----hCC--ceEEE-EcccCCC
Confidence            33445676654433444789999999999987     258899999976545 33322    222  22222 22333 3


Q ss_pred             CcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhc----c----CC--CCCccccchHHHHhcCcEEEEEe
Q 022113           85 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----E----LR--PTSIEKEVFPKIALEGKLFAMVL  154 (302)
Q Consensus        85 ~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l----~----~~--~~~~~~~~~~~l~~~~~v~~~~~  154 (302)
                      .|+++ +|+ +|+++.|.|+|.   ..++++|+|+|+++.++.+    +    .+  ......+++..+.+..++.++.+
T Consensus       155 ~~~v~-~d~-~g~v~~~~e~~~---~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e~~~~d~~~~l~~~~~v~~~~~  229 (254)
T 1jyk_A          155 EWFLV-YGD-DYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEEL  229 (254)
T ss_dssp             CCEEE-ECT-TCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEEC
T ss_pred             CeEEE-ECC-CCeEEEEEECCC---CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhCCeEEEEe
Confidence            68765 765 789999999863   3588999999998744322    1    11  11112334444556678998888


Q ss_pred             c-CeeEecCChHHHHHHHHHH
Q 022113          155 P-GFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       155 ~-g~~~digt~~~~~~a~~~~  174 (302)
                      + ++|.+|+|+++|.+++..+
T Consensus       230 ~~~~~~~Idt~edl~~a~~~l  250 (254)
T 1jyk_A          230 EGNSIYEIDSVQDYRKLEEIL  250 (254)
T ss_dssp             CTTSEEECCSHHHHHHHHHHH
T ss_pred             cCCeEEEcCCHHHHHHHHHHh
Confidence            7 7999999999999997755

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=99.28  E-value=6.3e-11  Score=99.46  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=104.5

Q ss_pred             cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeC---CCCCCcce
Q 022113           14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKV---DEPSKYGV   88 (302)
Q Consensus        14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~g~   88 (302)
                      .++.+..++.+.||++++ .++..+.   .+.+++++||. +++ .++.++++.|.+.++.+++.....   .++..++.
T Consensus        61 ~~~~~~~~~~~~g~~~~~-~~~~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (234)
T 2y6p_A           61 CEVFLTPSDLPSGSDRVL-YVVRDLD---VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYERPEDVKV  136 (234)
T ss_dssp             SEEEECCTTCCSHHHHHH-HHHTTCC---CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGGCTTSCEE
T ss_pred             eEEEECCcccccchHHHH-HHHHhCC---CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhcCCCceEE
Confidence            566555556678999876 4555553   26899999999 777 679999999987764344444321   13444443


Q ss_pred             EEEeCCCCcEEEEEecCCC--C----CCCeEEEEEEEeCHhhHhhccCCCCC-cc-ccc---hHHHHhcCcEEEEEecCe
Q 022113           89 VVMEESTGKVEKFVEKPKL--F----VGNKINAGIYLLNPAVLDRIELRPTS-IE-KEV---FPKIALEGKLFAMVLPGF  157 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~--~----~~~~~~~Giy~~~~~~l~~l~~~~~~-~~-~~~---~~~l~~~~~v~~~~~~g~  157 (302)
                       ..++ +|++..|.|+|..  .    ...+.++|+|+|+++.|..+...... +. .+.   +..+.++.++.++..+++
T Consensus       137 -~~~~-~g~v~~~~e~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~g~~v~~~~~~~~  214 (234)
T 2y6p_A          137 -VLDR-EGYALYFSRSPIPYFRKNDTFYPLKHVGIYGFRKETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENY  214 (234)
T ss_dssp             -EECT-TSBEEEEESSCCSCCSSCCSSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTHHHHHHTTCCCEEEECCSC
T ss_pred             -EEcC-CCCEeeeecCCCCcccccccceeeEEEEEEEcCHHHHHHHHhCCCCccchhhHHHHHHHHHCCCeEEEEEeCCc
Confidence             3454 7899999998742  1    13578999999999988665322111 10 111   222334678999999999


Q ss_pred             eEecCChHHHHHHHHH
Q 022113          158 WMDIGQPRDYITGLRL  173 (302)
Q Consensus       158 ~~digt~~~~~~a~~~  173 (302)
                      |.||++|++|..++..
T Consensus       215 ~~dI~t~~dl~~a~~~  230 (234)
T 2y6p_A          215 YHGVDTEEDLKIVEEK  230 (234)
T ss_dssp             CCCCCSHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHH
Confidence            9999999999988654

>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}

Probab=99.27  E-value=1.5e-11  Score=104.61  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=15.2

Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      .||++|+|+.++.|.++++||++++|++++++
T Consensus       165 ~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV  196 (252)
T 3jqy_B          165 IISSYVWVGRNVSIMKGVSVGSGSVIGYGSIV  196 (252)
T ss_dssp             EECSSCEECSSEEECTTCEECTTCEECTTCEE
T ss_pred             EEecCcEECCCCEECCCCEECCCCEECCCCEE
Confidence            44444444444444444444444445544444

>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A

Probab=99.26  E-value=1.4e-11  Score=107.21  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=41.6

Q ss_pred             CceEecceEEcCCcEE--CCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCC----cEEec-cEECCCCEECCCc
Q 022113          189 GANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKH----ACISS-SIIGWHSTVGQWA  260 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~----~~i~~-~~i~~~~~i~~~~  260 (302)
                      ++.|++++.|++++.|  +.+++|++++.||++|.|+.+++|. ++.+++++.++.+    ++|++ +.||.++.|..++
T Consensus       163 gv~I~p~a~IG~~v~I~~g~gvvIG~~~~IG~~v~I~~~vtIG~~~~ig~~~~i~~~~~~~~~IGd~v~IGaga~Ilggv  242 (313)
T 3q1x_A          163 SIDIHPGASIKGHFFIDHGVGVVIGETAIIGEWCRIYQSVTLGAMHFQEEGGVIKRGTKRHPTVGDYVTIGTGAKVLGNI  242 (313)
T ss_dssp             CCEECTTCEECSSCEESSCTTCEECTTCEECSSCEECTTCEEECCCCCCTTCCCCCCSSCSCEECSSCEECTTCEEESSC
T ss_pred             CeEECCCCEECCCEEECCCCceEECCCcEECCCCEECCCcEEeCCcEECCCceEcCCCccCCEECCCCEECCCCEECCCc
Confidence            4445555555555555  4445555555555555555555554 2333433333332    13322 3344444444444


Q ss_pred             EEccCcEECCCcEECCc
Q 022113          261 RVENMTILGEDVHVCDE  277 (302)
Q Consensus       261 ~i~~~~~i~~~~~v~~~  277 (302)
                      +|+.+++||.+++|..+
T Consensus       243 ~IG~~a~IGagsvV~~d  259 (313)
T 3q1x_A          243 IVGSHVRIGANCWIDRD  259 (313)
T ss_dssp             EECSSEEECTTCEECSC
T ss_pred             EECCCCEECCCCEECCC
Confidence            44444444444444443

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.25  E-value=4.6e-11  Score=101.64  Aligned_cols=27  Identities=15%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             CcEE--EEeCCeecCcCHHHHHHHHHHcC
Q 022113           44 EPFF--VLNSDVISEYPFAEMIEFHKAHG   70 (302)
Q Consensus        44 ~~~l--v~~gD~l~~~~l~~~~~~~~~~~   70 (302)
                      |++|  ++++|++...+|.+.+.+|.+++
T Consensus        20 EP~L~~~l~~~IL~~~~l~~aLa~~la~k   48 (267)
T 1ssq_A           20 EPMLASFFHSTILKHQNLGGALSYLLANK   48 (267)
T ss_dssp             CHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred             CCHHHHHhcccccCCCCHHHHHHHHHhcc
Confidence            7999  89999999999999999997753

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=99.25  E-value=2.2e-10  Score=98.04  Aligned_cols=163  Identities=12%  Similarity=0.128  Sum_probs=109.6

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHcCCcEEEEEEeCCCC-----
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEP-----   83 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-----   83 (302)
                      .+|+++.+..+..+.||+ .+..++..+.....+.+++++||. + .+.++.++++.|.+.++++++++.+..++     
T Consensus        60 ~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (262)
T 1vic_A           60 SFGAEVCMTSVNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFN  138 (262)
T ss_dssp             HTTCEEEECCCSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTC
T ss_pred             hcCCEEEECCccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcC
Confidence            467776333344567887 455666655321236789999998 3 35669999999988777888888887653     


Q ss_pred             CCcceEEEeCCCCcEEEEEecC-----------------CCCCCCeEEEEEEEeCHhhHhhccCCCCC-c-cccchH--H
Q 022113           84 SKYGVVVMEESTGKVEKFVEKP-----------------KLFVGNKINAGIYLLNPAVLDRIELRPTS-I-EKEVFP--K  142 (302)
Q Consensus        84 ~~~g~v~~d~~~~~v~~~~ekp-----------------~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-~-~~~~~~--~  142 (302)
                      ..+..+..++ +|+++.|.+++                 ..+...+.++|+|+|+++++..+...... . ..+++.  .
T Consensus       139 ~~~~~~~~~~-~g~v~~f~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~~~~~~~~~~e~~~~~~  217 (262)
T 1vic_A          139 PNAVKVLTDK-DGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLR  217 (262)
T ss_dssp             TTSCEEEECT-TSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTHH
T ss_pred             CCceEEEECC-CCCEeeeecCCCCcCCccccccccccccccccceEEEEEEEEeeHHHHHHHHhCCCCchhhhhhHHHHH
Confidence            3445455564 68999888764                 22234689999999999988765321111 0 011111  2


Q ss_pred             HH-hcCcEEEEEec-CeeEecCChHHHHHHHHHHH
Q 022113          143 IA-LEGKLFAMVLP-GFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       143 l~-~~~~v~~~~~~-g~~~digt~~~~~~a~~~~l  175 (302)
                      ++ ...++.++..+ ++|.||++|++|..++..+.
T Consensus       218 ~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~  252 (262)
T 1vic_A          218 VLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILA  252 (262)
T ss_dssp             HHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHH
T ss_pred             HHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence            33 45689999888 79999999999999887654

>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*

Probab=99.24  E-value=8e-11  Score=96.23  Aligned_cols=38  Identities=8%  Similarity=0.047  Sum_probs=19.3

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      ++..+.||++++|+.+++|.++++||++++|+++++|.
T Consensus       129 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV~  166 (195)
T 3nz2_A          129 ICKPIVIEDDVWIGGNVVINQGVTIGARSVVAANSVVN  166 (195)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             ecCCeEECCCCEEcCCCEECCCCEECCCCEECCCCEEc
Confidence            34444555555555555555555555555555555443

>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A

Probab=99.23  E-value=8.1e-11  Score=96.50  Aligned_cols=37  Identities=11%  Similarity=0.040  Sum_probs=20.9

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      +...+.||++|+|+.+++|.++++||++++|+++++|
T Consensus       127 ~~~~v~IG~~v~IG~~~~I~~gv~IG~~~vIgagsvV  163 (199)
T 3ftt_A          127 KAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVV  163 (199)
T ss_dssp             EECCEEECSSEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             ecCCeEEcCCcEEcCCCEECCCCEECCCCEECCCCEE
Confidence            3455555555555555555555555555555555554

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.22  E-value=8.9e-11  Score=100.76  Aligned_cols=47  Identities=11%  Similarity=0.078  Sum_probs=33.0

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCccccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIKS  293 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~~  293 (302)
                      +++||++|+||++++|.++++||++++||++++|..    +++   .|++.++.
T Consensus       209 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~~dVp~~s~v~G~PAr~i~~  262 (289)
T 1t3d_A          209 HPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGK  262 (289)
T ss_dssp             SCEECTTCEECTTCEEESSCEECTTCEECTTCEECSCBCTTCEEETTTTEEEEC
T ss_pred             CeEECCCeEECCCCEEecCcEECCCCEECCCCEEccCCCCCCEEEecCCEEeCc
Confidence            367788888888888877788888888888877653    333   46666553

>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*

Probab=99.21  E-value=6.4e-11  Score=98.34  Aligned_cols=104  Identities=12%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             cccccCceEecc-eEEcC---CcEECCCCEECCCcEECC---CCEECCCcEEeceEE-c---cCCEECCCcEEe-ccEEC
Q 022113          184 LKLATGANIVGN-VLVHE---SAQIGEGCLIGPDVAVGP---GCVVESGVRLSRCTV-M---RGVRIKKHACIS-SSIIG  251 (302)
Q Consensus       184 ~~~~~~~~i~~~-~~i~~---~~~i~~~~~i~~~~~ig~---~~~i~~~~~i~~~~i-~---~~~~i~~~~~i~-~~~i~  251 (302)
                      ..+.+++.|.++ +.+..   ++.||++|.|++++++..   ++.||++|.|..+.+ .   .++.||++|.|+ ++.|.
T Consensus        37 v~Ig~~~~I~~~~~~i~g~~~~v~IG~~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~  116 (215)
T 2wlg_A           37 VYIGNNCKIVSSNIRLKGNNITLFIADDVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIR  116 (215)
T ss_dssp             EEECTTCEEESCEEEEESSSCEEEECTTCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEE
T ss_pred             EEECCCCEEeCceEEEEcCCCEEEECCCCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEE
Confidence            345555666555 34433   266666666666666642   366777776664333 2   456667777775 45555


Q ss_pred             CC-------------------CEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          252 WH-------------------STVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       252 ~~-------------------~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      +.                   +.||++++|+.+++|.++++||++++|++++++.
T Consensus       117 ~~~~h~~~~~~~~~~~~~~~~v~Igd~v~IG~~~~I~~gv~Ig~~~vIgagsvV~  171 (215)
T 2wlg_A          117 NTDMHPIYSLENGERINHGKDVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLY  171 (215)
T ss_dssp             SCCSSCEEETTTCBBCCCCCCEEECTTCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred             CCCCcccccccccccccCCCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEc
Confidence            42                   4666667776677777777777777777777654

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=99.20  E-value=3.3e-11  Score=111.18  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=76.1

Q ss_pred             cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCC--------------
Q 022113          188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH--------------  253 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~--------------  253 (302)
                      +.+.|++++.+++++.| .++.| .+++||++|.|+. +.|.+++|+++|.|+++++|+++++..+              
T Consensus       307 ~~~~i~~~~~i~~~~~i-~~~~I-~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~  383 (451)
T 1yp2_A          307 RSAPIYTQPRYLPPSKM-LDADV-TDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAA  383 (451)
T ss_dssp             SSSCCCCCCCCCCCEEE-EEEEE-EEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHT
T ss_pred             CCCeeccCCccCCCeEE-cceEE-eCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccc
Confidence            34555566666666666 66777 5789999999986 8888999999999999999999888777              


Q ss_pred             -----CEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          254 -----STVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       254 -----~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                           +.||++++| .+++||++|.||+++++.++.
T Consensus       384 ~g~~~~~Ig~~~~i-~~~~Ig~~~~IG~~~~i~~~~  418 (451)
T 1yp2_A          384 KGSVPIGIGKNCHI-KRAIIDKNARIGDNVKIINKD  418 (451)
T ss_dssp             TTCCCSEECTTCEE-ESEEECTTCEECTTCEECCSS
T ss_pred             cCceeEEECCCCEE-eccEeCCCcEECCCCEEeCCc
Confidence                 999999998 558888888888888887653

>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*

Probab=99.19  E-value=3.3e-10  Score=92.83  Aligned_cols=37  Identities=14%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ++..+.||++++|+.+++|.++++||++++|+++++|
T Consensus       128 ~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV  164 (203)
T 1krr_A          128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIV  164 (203)
T ss_dssp             EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             eCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEE
Confidence            3444555555555555555555555555555555554

>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3

Probab=99.19  E-value=1.5e-10  Score=93.34  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=15.6

Q ss_pred             CCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          252 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ..+.||++++|+.+++|.++++||++++|+++++|
T Consensus       127 ~~v~IG~~v~Ig~~a~I~~gv~IG~~~vIgagsvV  161 (182)
T 1ocx_A          127 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV  161 (182)
T ss_dssp             CCEEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             CCeEEeCCeEECCCCEECCCcEECCCCEECCCCEE
Confidence            34444444444444444444444444444444443

>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}

Probab=99.18  E-value=4.3e-11  Score=106.20  Aligned_cols=12  Identities=25%  Similarity=0.210  Sum_probs=6.1

Q ss_pred             CCCChHHHHHcH
Q 022113           24 PLGTAGPLALAR   35 (302)
Q Consensus        24 ~~Gt~~al~~a~   35 (302)
                      ..|++..+..|+
T Consensus        56 ~~~~~~~~~~~~   67 (387)
T 2rij_A           56 NFGSAAIMLEAF   67 (387)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             hcchHHHHHHHH
Confidence            345555455554

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=99.17  E-value=1.3e-10  Score=97.57  Aligned_cols=150  Identities=15%  Similarity=0.258  Sum_probs=95.4

Q ss_pred             HHhhcCCcEEEEEecCCC-CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEeC---C
Q 022113            7 EFEAKLGIKIICSQETEP-LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKV---D   81 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~~~~-~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~~---~   81 (302)
                      .+.+.++.++.++.++.+ +|++++++.+++.+.    +++++++||+.++.+ +.++++    .. . + ++...   .
T Consensus        75 ~~~~~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~~~~~l~~----~~-~-~-~~~~~~~~~  143 (232)
T 2xme_A           75 AFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQFIEKAVR----GE-G-V-IADREPRFV  143 (232)
T ss_dssp             HHHTTSCCCEEEEECSCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHHHHHHHTT----CC-E-E-EEESSCSSS
T ss_pred             HHHHhcCCcEEEEECCCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHHHHHHHHh----CC-C-c-EEEcccccc
Confidence            334557778888887654 899999999999884    579999999976544 333333    21 2 2 22221   1


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEec-CeeEe
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP-GFWMD  160 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~-g~~~d  160 (302)
                      ++..++.+..+  +|+++.|.++|.  ..++.++|+|++++++|+.++.....- ...+..+++.+++..+..+ ++|.|
T Consensus       144 ~~~~~~~v~~~--~g~v~~~~~~~~--~~~~~~~g~~~~~~~~~~~l~~~~~~g-~~~l~~ll~~~~v~~~~~~~~~~~d  218 (232)
T 2xme_A          144 DIGEATKIRVE--DGRVAKIGKDLR--EFDCVDTGFFVLDDSIFEHAEKLRDRE-EIPLSEIVKLARLPVTYVDGELWMD  218 (232)
T ss_dssp             CTTTSCEEEEE--TTEEEEEETTCS--SCSEEEEEEEEECTTHHHHHGGGTTSS-CCCHHHHHHHHTCBEEECCSCCEEE
T ss_pred             CCCcceEEEEc--CCEEEEeecCCC--CcceEEEEEEEECHHHHHHHHHHHhcC-hhHHHHHHHcCCEEEEEECCCCEEe
Confidence            34456777665  689999998874  346789999999999998775321100 1124445555566666665 68999


Q ss_pred             cCChHHHHHHHH
Q 022113          161 IGQPRDYITGLR  172 (302)
Q Consensus       161 igt~~~~~~a~~  172 (302)
                      ++||++|.+++.
T Consensus       219 I~tpeDl~~a~~  230 (232)
T 2xme_A          219 VDTKEDVRRANR  230 (232)
T ss_dssp             EECC--------
T ss_pred             CCCHHHHHHHHh
Confidence            999999987754

>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*

Probab=99.16  E-value=2.7e-10  Score=96.93  Aligned_cols=34  Identities=9%  Similarity=0.014  Sum_probs=24.7

Q ss_pred             cEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      ++||++|+||++++|.++++||++++||++++|.
T Consensus       190 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~  223 (267)
T 1ssq_A          190 PKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL  223 (267)
T ss_dssp             CEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred             eEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence            5677777777777777777777777777777654

>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}

Probab=99.16  E-value=1.6e-10  Score=99.07  Aligned_cols=78  Identities=19%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             ccCceEecceEEcCCcEEC--CCCEECCCcEECCCCEECCCcEEec---------eEEccCCEECCCcEEe-ccEECCCC
Q 022113          187 ATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACIS-SSIIGWHS  254 (302)
Q Consensus       187 ~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~  254 (302)
                      ..++.|++++.||+++.|+  .+++|++++.||++|.|+.+++|..         ++|+++|.||.++.|. +++||++|
T Consensus       162 ~~gi~I~p~a~IG~~v~I~hg~gvvIG~~~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~~a  241 (287)
T 3mc4_A          162 IFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCS  241 (287)
T ss_dssp             HTCCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECTTC
T ss_pred             ccCeEECCCCEECCCeEEccCCCeEECCCeEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECCCC
Confidence            3456677777777777776  6777777778888888887777764         6889999999888884 47788888


Q ss_pred             EECCCcEEcc
Q 022113          255 TVGQWARVEN  264 (302)
Q Consensus       255 ~i~~~~~i~~  264 (302)
                      .||+++.|..
T Consensus       242 ~IGagsvV~k  251 (287)
T 3mc4_A          242 KIAAGSVVLK  251 (287)
T ss_dssp             EECTTCEECS
T ss_pred             EECCCCEEcc
Confidence            8888877754

>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}

Probab=99.16  E-value=1.9e-10  Score=99.76  Aligned_cols=75  Identities=28%  Similarity=0.348  Sum_probs=41.9

Q ss_pred             cCceEecceEEcCCcEE--CCCCEECCCcEECCCCEECCCcEEec-e-----------------EEccCCEECCCcEEe-
Q 022113          188 TGANIVGNVLVHESAQI--GEGCLIGPDVAVGPGCVVESGVRLSR-C-----------------TVMRGVRIKKHACIS-  246 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i--~~~~~i~~~~~ig~~~~i~~~~~i~~-~-----------------~i~~~~~i~~~~~i~-  246 (302)
                      .++.|++++.|++++.|  +.+++|+++++||++|.|+.+++|.. +                 +|+++|.||++++|. 
T Consensus       189 ~gv~I~p~a~IG~~v~I~hg~gvvIG~~~~IG~~v~I~~gvtIg~~~~~~~~~g~~i~~~~~~~~IGd~V~IGaga~Il~  268 (310)
T 3f1x_A          189 TGIDIHPGAQIGHHFTIDHGTGVVIGATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILG  268 (310)
T ss_dssp             HSCEECTTCEECSSCEEESCTTCEECTTCEECSSCEEETTCEEECC--------------CCSCEECTTCEECTTCEEES
T ss_pred             CCcEECCCCEECCCcEECCCCCeEECCceEEcCCCEECCCCEECCCccccccccccccCCCCCCEECCCcEEcCCCEECC
Confidence            44556666666666666  55666666666666666666666652 2                 456666666555553 


Q ss_pred             ccEECCCCEECCCcEE
Q 022113          247 SSIIGWHSTVGQWARV  262 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i  262 (302)
                      +++||+++.||++++|
T Consensus       269 gv~IGd~a~IGagsvV  284 (310)
T 3f1x_A          269 RVTIGKGATVGGNIWV  284 (310)
T ss_dssp             SCEECTTCEECSSCEE
T ss_pred             CcEECCCCEECCCCEE
Confidence            3444444444444444

>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*

Probab=99.14  E-value=7.2e-10  Score=89.95  Aligned_cols=101  Identities=17%  Similarity=0.241  Sum_probs=51.3

Q ss_pred             ccccCceEecceEE--cCCcEECCCCEECCCc--------EECCCCEECCCcEEe-------------ceEEccCCEECC
Q 022113          185 KLATGANIVGNVLV--HESAQIGEGCLIGPDV--------AVGPGCVVESGVRLS-------------RCTVMRGVRIKK  241 (302)
Q Consensus       185 ~~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~--------~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~  241 (302)
                      .+.+++.|.+++.+  +.++.||+++.|++++        +||++|.|+++|.|.             ...++..++||+
T Consensus        58 ~ig~~~~I~~~~~~~~g~~~~IG~~~~i~~~~~i~~~~~i~IG~~~~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~  137 (188)
T 3srt_A           58 SVGKQINVEQNIRCDYGYNIHVGENFFANYDCIFLDVCKIEIGDNVMLAPNVQIYTAYHPIDAQLRNSGIEYGSPVKIGD  137 (188)
T ss_dssp             BCCSCEEECSCEEESSSTTEEECTTEEECTTEEEECSSCEEECSSCEECTTCEEECEECCSSHHHHHTTEEEECCEEECS
T ss_pred             hcCCCCEEcCCEEEEeCCCeEECCcccccCceEEecCCceEECCeeEECCCcEEeeCCccCchhhccccceECCCcEECC
Confidence            34555555554444  2344444444444433        667777777777773             122344555555


Q ss_pred             CcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeE---ecCcccc
Q 022113          242 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV---LPHKEIK  292 (302)
Q Consensus       242 ~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v---~~~~~~~  292 (302)
                      +|.|     |.++.|.++++|+.+++||.+++|..+  +.++++   .|++.++
T Consensus       138 ~v~I-----G~~~~I~~gv~IG~~~vIgagsvV~~d--vp~~~v~~G~Pa~vi~  184 (188)
T 3srt_A          138 NVWI-----GGGVIITPGITIGDNVVIGAGSVVTKD--IPPNTVAVGNPCRVIK  184 (188)
T ss_dssp             SCEE-----CTTCEECTTCEECSSEEECTTCEECSC--BCSSEEEETTTTEEEE
T ss_pred             CcEE-----cCCCEECCCcEECCCCEECCCCEECcc--cCCCCEEEccCCEEec
Confidence            5544     444444444555555555555555554  344443   3555443

>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6

Probab=99.13  E-value=4.7e-10  Score=96.30  Aligned_cols=76  Identities=17%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             CceEecceEEcCCcEEC--CCCEECCCcEECCCCEECCCcEEec---------eEEccCCEECCCcEEe-ccEECCCCEE
Q 022113          189 GANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACIS-SSIIGWHSTV  256 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i  256 (302)
                      +..|++++.|++++.|+  .+++|+++++||++|.|+.+++|.+         ++|+++|.||.++.|. +++||+++.|
T Consensus       157 g~~I~p~a~IG~gv~I~~g~gvvIG~~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~~a~I  236 (289)
T 1t3d_A          157 QVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKI  236 (289)
T ss_dssp             SCEECTTCEECSSCEECSCTTCEECTTCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCEE
T ss_pred             ceEEcCCCEEcCCEEECCCCceEECCCcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECCCCEE
Confidence            34555555566666665  3566666677777777777776653         5778888888777773 4667777777


Q ss_pred             CCCcEEcc
Q 022113          257 GQWARVEN  264 (302)
Q Consensus       257 ~~~~~i~~  264 (302)
                      |+++.+.+
T Consensus       237 GagsvV~~  244 (289)
T 1t3d_A          237 GAGSVVLQ  244 (289)
T ss_dssp             CTTCEECS
T ss_pred             CCCCEEcc
Confidence            77776644

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=99.12  E-value=1e-10  Score=96.94  Aligned_cols=49  Identities=22%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccccc
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIKSS  294 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~~~  294 (302)
                      ++++||++|+||+++.|.+++.||++|.|+++++|.    ++++   .|++.++..
T Consensus       110 g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~dVp~~~vv~G~PAk~i~~~  165 (212)
T 3eev_A          110 GDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTKDVAPYEVVGSNPAKHIKFR  165 (212)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEEecc
Confidence            457889999999999999999999999999998864    4444   477776654

>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A

Probab=99.12  E-value=3.4e-10  Score=91.58  Aligned_cols=16  Identities=31%  Similarity=0.850  Sum_probs=8.5

Q ss_pred             CcEECCCCEECCCcEE
Q 022113          213 DVAVGPGCVVESGVRL  228 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i  228 (302)
                      .++||++|.|+++|.|
T Consensus        94 ~i~IG~~v~Ig~~v~I  109 (185)
T 2p2o_A           94 EVRIGDHCFIGPGVHI  109 (185)
T ss_dssp             CEEECTTCEECTTCEE
T ss_pred             ceEECCCcEEeCCCEE
Confidence            3455555555555555

>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}

Probab=99.07  E-value=5.1e-10  Score=102.30  Aligned_cols=49  Identities=24%  Similarity=0.262  Sum_probs=23.3

Q ss_pred             cEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          214 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       214 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      ++||++|.||++|.|.+|+|+++|.|+++|+|.+++||+++.|++++.|
T Consensus       341 ~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i  389 (420)
T 3brk_X          341 SLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIV  389 (420)
T ss_dssp             CEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEE
T ss_pred             cEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEE
Confidence            4444444444444444444444444444444444444444444444444

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=99.05  E-value=3.8e-10  Score=93.58  Aligned_cols=49  Identities=16%  Similarity=0.138  Sum_probs=38.4

Q ss_pred             eccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCcccccc
Q 022113          246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIKSS  294 (302)
Q Consensus       246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~~~  294 (302)
                      ++++||++|+||.++.|.+++.||+++.|+++++|..    +++   .|++.++..
T Consensus       117 g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~dv~~~~~~~G~Pa~~i~~r  172 (219)
T 4e8l_A          117 GDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKNVAPYSIVGGNPLKFIRKR  172 (219)
T ss_dssp             CCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcccCCCCeEEEecCCEeeccc
Confidence            5688999999999999999999999999999988654    333   366666544

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=99.05  E-value=3.2e-09  Score=89.64  Aligned_cols=160  Identities=13%  Similarity=0.144  Sum_probs=104.3

Q ss_pred             cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHc-CCcEEEEEEeCCCCC---
Q 022113           11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAH-GGEASIMVTKVDEPS---   84 (302)
Q Consensus        11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~---   84 (302)
                      .+|+++.+..++.+.||++++.. +..+.   .+.+++++||. + .+.++.++++.|.+. +.++++++.+. ++.   
T Consensus        61 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~~---~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~  135 (245)
T 1h7e_A           61 AFGGKAIMTRNDHESGTDRLVEV-MHKVE---ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAI-SAAEAA  135 (245)
T ss_dssp             HTTCEEEECCSCCSSHHHHHHHH-HHHSC---CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEE-CHHHHT
T ss_pred             HcCCeEEeCCCccCCcHHHHHHH-HHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecC-CHHHhc
Confidence            35776654445667899776644 44443   36899999999 3 355699999999887 67777777765 211   


Q ss_pred             CcceE--EEeCCCCcEEEEEecCCC--C----CCCeEEEEEEEeCHhhHhhccCCC-CCc-cccchHHH---HhcCcEEE
Q 022113           85 KYGVV--VMEESTGKVEKFVEKPKL--F----VGNKINAGIYLLNPAVLDRIELRP-TSI-EKEVFPKI---ALEGKLFA  151 (302)
Q Consensus        85 ~~g~v--~~d~~~~~v~~~~ekp~~--~----~~~~~~~Giy~~~~~~l~~l~~~~-~~~-~~~~~~~l---~~~~~v~~  151 (302)
                      .++.+  ..++ +|++..|.+++..  .    ...+.++|+|+|+++.+..+.... ..+ ..+.+..+   ....++.+
T Consensus       136 ~~~~~~~~~~~-~g~~~~~~~~~~~~~r~~~~~~~~~~~g~y~~~~~~l~~~~~~~~~~~~~td~~~~~~~~~~g~~v~~  214 (245)
T 1h7e_A          136 EPSTVKVVVNT-RQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGINIRT  214 (245)
T ss_dssp             CTTSCEEEECT-TCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTCCEEE
T ss_pred             CCCCcEEEECC-CCcEEEeecCCCCCCcccccCceeEEEEEEEcCHHHHHHHHhCCCCccccchhhHHHHHHHCCCeEEE
Confidence            12222  2243 7899999886432  1    125789999999999875432111 100 01111121   23568999


Q ss_pred             EEecCeeEecCChHHHHHHHHHHHH
Q 022113          152 MVLPGFWMDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       152 ~~~~g~~~digt~~~~~~a~~~~l~  176 (302)
                      +..+++|.|+++|++|..+...+..
T Consensus       215 ~~~~~~~~dIdtp~Dl~~a~~~l~~  239 (245)
T 1h7e_A          215 FEVAATGPGVDTPACLEKVRALMAQ  239 (245)
T ss_dssp             EECCCCCCCSSSHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998876544

>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A

Probab=99.01  E-value=5.4e-10  Score=93.02  Aligned_cols=40  Identities=10%  Similarity=0.083  Sum_probs=33.3

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      +..++.||++|+|+.+++|.++++||++++|+++++|...
T Consensus       116 ~~g~v~IG~~v~IG~~a~I~~gv~IG~gavIgagsvV~~d  155 (220)
T 4hur_A          116 LKGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTKN  155 (220)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             ccCCeEECCCcEECCCCEEeCCCEECCCCEEcCCCEEccc
Confidence            4567789999999888999999999999999888887544

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.99  E-value=5e-10  Score=92.30  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=51.8

Q ss_pred             cEECCCCEECCCcEECCCCEECCCcEEec---eE-----EccCCEECCC----------cEE-eccEECCCCEECCCcEE
Q 022113          202 AQIGEGCLIGPDVAVGPGCVVESGVRLSR---CT-----VMRGVRIKKH----------ACI-SSSIIGWHSTVGQWARV  262 (302)
Q Consensus       202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---~~-----i~~~~~i~~~----------~~i-~~~~i~~~~~i~~~~~i  262 (302)
                      +.+...+.+++.++||++|.|++++.|..   .+     .++.+.++++          +.+ ++++||++|+||.++.|
T Consensus        49 ~~i~~~~~i~~~v~IG~~~~Ig~gv~I~~~~~~h~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~v~Ig~~v~IG~~a~I  128 (209)
T 1mr7_A           49 QILYHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGNDVWIGKDVVI  128 (209)
T ss_dssp             GEESCCGGGCCCEEECSSCEECTTCEEECGGGCCCCSSCCCCGGGGCTTGGGGCCCGGGSCCCCCEEECSSCEECTTCEE
T ss_pred             eEEeeccccCCCEEECCCCEEcCCCEEEeCCCcccccCccccceEECCcccccccccccccccCCcEECCCCEEcCCCEE
Confidence            34444444555667777777777776621   11     1111222222          222 45788999999999999


Q ss_pred             ccCcEECCCcEECCceEEcCC
Q 022113          263 ENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       263 ~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      .+++.||+++.|++++++..+
T Consensus       129 ~~gv~Ig~~~~Igags~V~~~  149 (209)
T 1mr7_A          129 MPGVKIGDGAIVAANSVVVKD  149 (209)
T ss_dssp             CTTCEECTTCEECTTCEECSC
T ss_pred             cCCCEECCCCEEcCCCEEcCC
Confidence            888999999999988886543

>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}

Probab=98.90  E-value=3.5e-09  Score=97.68  Aligned_cols=123  Identities=19%  Similarity=0.247  Sum_probs=89.7

Q ss_pred             hhHHHHHhhcCCcEEEEEecC------------------------CCCCChHHHHH--c---HhhhccCCCCcEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQET------------------------EPLGTAGPLAL--A---RDKLIDDTGEPFFVLNSD   52 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~------------------------~~~Gt~~al~~--a---~~~i~~~~~~~~lv~~gD   52 (302)
                      ++|+++ ...+|+++.|+.|+                        +|+||||++..  +   ++.+.....+.++|++||
T Consensus       157 ~~~~~~-~~~fg~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngD  235 (488)
T 2i5k_A          157 EHLIKK-YSANRIRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGD  235 (488)
T ss_dssp             HHHHGG-GCSSSCEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTT
T ss_pred             HHHHHh-ccccCceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCC
Confidence            456666 45678999999888                        89999999984  3   455522224799999999


Q ss_pred             eecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCC-cceEEEeCCCCc--EEEEEecCCCC--------CCCeEEEEEEEe
Q 022113           53 VISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSK-YGVVVMEESTGK--VEKFVEKPKLF--------VGNKINAGIYLL  120 (302)
Q Consensus        53 ~l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~g~v~~d~~~~~--v~~~~ekp~~~--------~~~~~~~Giy~~  120 (302)
                      ++.. .|+. ++..|.++++++++.+.+.+++.. ||.+..+  +|+  ++++.|.|...        .-...|+|+|+|
T Consensus       236 nL~~~~d~~-~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~~~~~~~~~Ntgi~~f  312 (488)
T 2i5k_A          236 NLGATVDLK-ILNHMIETGAEYIMELTDKTRADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWI  312 (488)
T ss_dssp             BSSCCCCHH-HHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHTCTTTCCEEEEEEEEE
T ss_pred             cCCCcccHH-HHHHHHhcCCcEEEEEEEecCCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcccccccCEEEEEEEEE
Confidence            9775 5776 668888999999999998887764 9988765  455  33333344321        135789999999


Q ss_pred             CHhhHhhc
Q 022113          121 NPAVLDRI  128 (302)
Q Consensus       121 ~~~~l~~l  128 (302)
                      +.+++..+
T Consensus       313 ~~~~L~~~  320 (488)
T 2i5k_A          313 NLKAVKRL  320 (488)
T ss_dssp             EHHHHHHH
T ss_pred             eHHHHHHH
Confidence            99888654

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.84  E-value=1e-08  Score=84.48  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             CCcEECCCCEECCCcEEe--ce--EEccC---------------CEECCCcEE-eccEECCCCEECCCcEEccCcEECCC
Q 022113          212 PDVAVGPGCVVESGVRLS--RC--TVMRG---------------VRIKKHACI-SSSIIGWHSTVGQWARVENMTILGED  271 (302)
Q Consensus       212 ~~~~ig~~~~i~~~~~i~--~~--~i~~~---------------~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~  271 (302)
                      +.+.||++|.|+++|+|.  ..  +..++               +.+++++.+ +.++||++|+||.++.|.+++.||++
T Consensus        55 ~~i~IG~~~~Ig~~v~i~~~g~~~h~~~~~s~~p~~~~~~~~~~~~i~~~~~~~~~v~IG~~v~IG~~a~I~~gv~Ig~~  134 (212)
T 1xat_A           55 DKLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHG  134 (212)
T ss_dssp             CCEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTT
T ss_pred             cCEEEcCCCEECCCCEEEeCCCCccccccccccceeeecccccccccccCceecCCeEECCCCEECCCCEEeCCCEECCC
Confidence            466788888888888762  11  22211               233445555 35889999999999999999999999


Q ss_pred             cEECCceEEcCC----eE---ecCcccccc
Q 022113          272 VHVCDEIYSNGG----VV---LPHKEIKSS  294 (302)
Q Consensus       272 ~~v~~~~~v~~~----~v---~~~~~~~~~  294 (302)
                      +.|+++++|..+    ++   .|++.++.+
T Consensus       135 ~~IgagsvV~~~vp~~~~~~G~Pa~~i~~~  164 (212)
T 1xat_A          135 AIIGSRALVTGDVEPYAIVGGNPARTIRKR  164 (212)
T ss_dssp             CEECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             CEECCCCEEcccCCCCcEEEccCCEEEccc
Confidence            999999887543    33   356655543

>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3

Probab=98.82  E-value=1.1e-08  Score=84.68  Aligned_cols=38  Identities=8%  Similarity=0.065  Sum_probs=21.7

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      +..++.||++|+|+.+++|.++++||++++|+++++|.
T Consensus       108 ~~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~  145 (212)
T 3eev_A          108 RSGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVT  145 (212)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             cCCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEc
Confidence            34455566666665556666666666666665555543

>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}

Probab=98.74  E-value=3.2e-08  Score=81.99  Aligned_cols=38  Identities=11%  Similarity=0.056  Sum_probs=29.8

Q ss_pred             CCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          251 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       251 ~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      ..++.||++++|+.+++|.++++||++++|+++++|..
T Consensus       116 ~g~v~Igd~v~IG~~a~I~~gv~IG~~~~IgagsvV~~  153 (219)
T 4e8l_A          116 KGDIEIGNDVWIGRDVTIMPGVKIGDGAIIAAEAVVTK  153 (219)
T ss_dssp             CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             cCCcEECCCeEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence            44577888888888888888888888888888887653

>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*

Probab=98.72  E-value=2.7e-08  Score=81.91  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=15.2

Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      +.||++++|+.+++|.++++||++++|++++++
T Consensus       114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V  146 (209)
T 1mr7_A          114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVV  146 (209)
T ss_dssp             EEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEE
Confidence            444444444444444444444444444444443

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=98.70  E-value=6e-09  Score=87.37  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=88.5

Q ss_pred             CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeCCCCcE
Q 022113           22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKV   98 (302)
Q Consensus        22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~~~~~v   98 (302)
                      +.+.||+++++.+++.+.    +.+++++||+  +.+.++.++++ | +.+.++++.+.+.+++ ..|+.+     .+++
T Consensus        67 ~~~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~v  135 (232)
T 2dpw_A           67 PDRGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAVEARFPRT-----KRTY  135 (232)
T ss_dssp             CCCSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHHHHHCTTC-----CCCC
T ss_pred             cCCCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccchhhhCCCc-----ceeE
Confidence            456899999999999874    6899999999  45666899998 6 5566777777653322 234432     2457


Q ss_pred             EEEEecCCCCCCCeEEEEEEEeCHhhHhhccC-----------------------------CCCCccccchHHHHh--cC
Q 022113           99 EKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL-----------------------------RPTSIEKEVFPKIAL--EG  147 (302)
Q Consensus        99 ~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~-----------------------------~~~~~~~~~~~~l~~--~~  147 (302)
                      ..+.|||      .+++|+|+|+++++..+..                             +... ..+++..+..  ..
T Consensus       136 ~~~~ek~------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~~~~ge~~-l~~~~~~~~~~~g~  208 (232)
T 2dpw_A          136 ARLREGT------FTGGNLLLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLS-LAEVEARAQRILGV  208 (232)
T ss_dssp             EEETTEE------EEECSEEEEEHHHHTTTHHHHHHHHHTTTCHHHHHHHHCHHHHHHHHHTCCC-HHHHHHHHHHHHSS
T ss_pred             EEEecCc------eeeeeEEEEcHHHHHHHHHHHHHHHHhccCHHHHHHHHCHHHHHHHHhccCC-HHHHHHHHHHHhCc
Confidence            7777776      3789999999998866531                             1111 1223333332  25


Q ss_pred             cEEEEEe--cCeeEecCChHHHH
Q 022113          148 KLFAMVL--PGFWMDIGQPRDYI  168 (302)
Q Consensus       148 ~v~~~~~--~g~~~digt~~~~~  168 (302)
                      ++..+..  .+.|.|++||++|.
T Consensus       209 ~v~~v~~~~~~~~~dIdtpeDl~  231 (232)
T 2dpw_A          209 EARALVTPYPEVGVDVDREEDLV  231 (232)
T ss_dssp             CEEEEECSCGGGTCCCCSHHHHC
T ss_pred             EEEEEecCChhhccCCCChhhcc
Confidence            7777777  46799999999973

>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*

Probab=98.70  E-value=4.7e-08  Score=90.52  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=93.2

Q ss_pred             hhHHHHHhhcCCc---EEEEEecC---------------------CCCCChHHHHHcHh-----hhccCCCCcEEEEeCC
Q 022113            2 LNFLKEFEAKLGI---KIICSQET---------------------EPLGTAGPLALARD-----KLIDDTGEPFFVLNSD   52 (302)
Q Consensus         2 ~~~~~~~~~~~g~---~i~~~~~~---------------------~~~Gt~~al~~a~~-----~i~~~~~~~~lv~~gD   52 (302)
                      ++|+++ .+.+|+   +|.|+.|+                     .|+|||+.+..+..     .+.....+.|+|+++|
T Consensus       175 ~~~f~~-~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~n~D  253 (505)
T 1jv1_A          175 KEFFTK-HKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVD  253 (505)
T ss_dssp             HHHHHH-TGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETT
T ss_pred             HHHHHh-hhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEEECC
Confidence            466776 667888   49888763                     69999999877643     2222223789999999


Q ss_pred             ee-cCcCHHHHHHHHHHcCCcEEEEEEe-CCCCCCcceEEEeCCCCc--EEEEEecCCCC----------CCCeEEEEEE
Q 022113           53 VI-SEYPFAEMIEFHKAHGGEASIMVTK-VDEPSKYGVVVMEESTGK--VEKFVEKPKLF----------VGNKINAGIY  118 (302)
Q Consensus        53 ~l-~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~v~~d~~~~~--v~~~~ekp~~~----------~~~~~~~Giy  118 (302)
                      ++ ...+...++..|.++++++++.+++ ..++.++|.+..+  +|+  ++++.|+|...          ..+..|+|+|
T Consensus       254 n~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~--dg~~~vvEy~E~p~~~~~~~~~~g~~~~~~~N~~~~  331 (505)
T 1jv1_A          254 NILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV--DGVYQVVEYSEISLATAQKRSSDGRLLFNAGNIANH  331 (505)
T ss_dssp             BTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGSCHHHHHCBCTTSSBSSCEEEEEEE
T ss_pred             ccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE--CCeEEEEEEeeCCHHHhhhcccccccccceeeEEEE
Confidence            95 7777788999999999999999987 5677899998876  354  45555555410          1368999999


Q ss_pred             EeCHhhHhhcc
Q 022113          119 LLNPAVLDRIE  129 (302)
Q Consensus       119 ~~~~~~l~~l~  129 (302)
                      +|+.++++.+.
T Consensus       332 ~f~l~~L~~i~  342 (505)
T 1jv1_A          332 FFTVPFLRDVV  342 (505)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EecHHHHHHHH
Confidence            99999887664

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=98.66  E-value=8.7e-08  Score=79.89  Aligned_cols=147  Identities=10%  Similarity=0.099  Sum_probs=96.2

Q ss_pred             hcCCcEEEEEecC----CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCC-
Q 022113           10 AKLGIKIICSQET----EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDE-   82 (302)
Q Consensus        10 ~~~g~~i~~~~~~----~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~-   82 (302)
                      +.+|+++ +..+.    ...|++++++.++..+.. ..+.++++.||. +. +.++.++++.|.+.+.++++.+.+..+ 
T Consensus        62 ~~~~~~~-~~~~~~~~~~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~  139 (228)
T 1ezi_A           62 KNFGVEV-VLRPAELASDTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHH  139 (228)
T ss_dssp             HHTTCEE-EECCC------CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSC
T ss_pred             HHcCCEE-EeCchHHcCCCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence            3467776 33322    356778999999998842 126789999998 33 466899998887766678888887766 


Q ss_pred             CCCcceEEEeCCCCcEEEEEe-c---CCC---CCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEec
Q 022113           83 PSKYGVVVMEESTGKVEKFVE-K---PKL---FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP  155 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~e-k---p~~---~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~  155 (302)
                      |..+..  .++ +|++..|.+ +   +..   ......++|+|+++++.+....        .+     ...++..+..+
T Consensus       140 p~~~~~--~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~--------~~-----~g~~v~~~~~~  203 (228)
T 1ezi_A          140 PLKTLL--QIN-NGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANN--------CF-----FIAPTKLYIMS  203 (228)
T ss_dssp             TTSCEE--ECC---CEEESSCHHHHTCCGGGSCCEEEEEEEEEEEEHHHHHHHT--------SS-----CCSSCEEEECC
T ss_pred             cceeeE--EcC-CCcEeeccccccccCCcccCchhheeeeEEEEEeHHHHhhCC--------cc-----cCCceEEEEeC
Confidence            444333  354 688888876 2   111   1123567899999988764421        11     14566666665


Q ss_pred             -CeeEecCChHHHHHHHHHH
Q 022113          156 -GFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       156 -g~~~digt~~~~~~a~~~~  174 (302)
                       .+|.||+||++|..+...+
T Consensus       204 ~~~~~dIdtpeDl~~a~~~l  223 (228)
T 1ezi_A          204 HQDSIDIDTELDLQQAENIL  223 (228)
T ss_dssp             TGGGCCCCSHHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHH
Confidence             5899999999998886544

>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*

Probab=98.62  E-value=2e-07  Score=76.77  Aligned_cols=39  Identities=8%  Similarity=0.050  Sum_probs=26.3

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      +...+.||++++|+.+++|.++++||++++|+++++|..
T Consensus       107 ~~~~v~IG~~v~IG~~a~I~~gv~Ig~~~~IgagsvV~~  145 (212)
T 1xat_A          107 PAGDTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTG  145 (212)
T ss_dssp             CCCCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ecCCeEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence            334566777777777777777777777777777776654

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=98.42  E-value=3.6e-07  Score=76.25  Aligned_cols=146  Identities=9%  Similarity=0.036  Sum_probs=87.2

Q ss_pred             hcCCcEEEEEec----CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113           10 AKLGIKIICSQE----TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus        10 ~~~g~~i~~~~~----~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      +.+|+++.+-.+    +.. +..++++.++..+..  .+.+++++||. +. ..++.++++.|.+.+++.++.+.+..+|
T Consensus        61 ~~~g~~~~~~~~~~~~~~~-~~~~~v~~al~~~~~--~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~~p  137 (229)
T 1qwj_A           61 KQFGAQVHRRSSETSKDSS-TSLDAIVEFLNYHNE--VDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQF  137 (229)
T ss_dssp             HHTTCEEEECCGGGSSTTC-CHHHHHHHHHTTCTT--CSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEECCC
T ss_pred             HHcCCEEEeChhhhcCCCC-cHHHHHHHHHHhcCC--CCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeeccCh
Confidence            446777632221    122 223788888887732  36799999998 44 4569999999988777766655555566


Q ss_pred             CCcceEEEeCCCCcEEE--EEec----CCC--CCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEec
Q 022113           84 SKYGVVVMEESTGKVEK--FVEK----PKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP  155 (302)
Q Consensus        84 ~~~g~v~~d~~~~~v~~--~~ek----p~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~  155 (302)
                      ..++..  +. ...+..  +.++    +..  +.....++|+|+|++++|  +.    .+        .....+..+..+
T Consensus       138 ~~~~v~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~giY~~~~~~l--~~----~~--------~~g~~~~~~~~~  200 (229)
T 1qwj_A          138 RWSEIQ--KG-VREVTEPLNLNPAKRPRRQDWDGELYENGSFYFAKRHLI--EM----GY--------LQGGKMAYYEMR  200 (229)
T ss_dssp             EECCCC--SS-TTCCCCBSSSBTTBCCCTTTSCCEEEEEEEEEEEEHHHH--HT----TC--------SSCSSEEEEECC
T ss_pred             hHhhcc--cc-ccccccccccccccccCCCCCCceEEEeeEEEEEEHHHh--cc----cc--------ccCCeEEEEECC
Confidence            555431  20 000111  1111    111  123467999999999988  11    01        112334321444


Q ss_pred             -CeeEecCChHHHHHHHHHHH
Q 022113          156 -GFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       156 -g~~~digt~~~~~~a~~~~l  175 (302)
                       ++|.||++|++|..++..+.
T Consensus       201 ~~~~~dIdt~~Dl~~a~~~~~  221 (229)
T 1qwj_A          201 AEHSVDIDVDIDWPIAEQRVL  221 (229)
T ss_dssp             GGGCCCHHHHCSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHH
Confidence             68999999999999977654

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=98.35  E-value=1.8e-06  Score=71.43  Aligned_cols=148  Identities=16%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      +..+.++.+.  .+++++++.|+..+..  .+.++++.||+ +.+ .++.++++.|. ...+.++.+.+..++..+    
T Consensus        67 ~~~v~~~~~~--~~~~~~i~~al~~~~~--~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~d~~~~----  137 (223)
T 2xwl_A           67 GEDSVIVSGG--VDRTESVALALEAAGD--AEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPADTIKA----  137 (223)
T ss_dssp             BTTEEEEECC--SSHHHHHHHHHTTCTT--CSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCSSCEEE----
T ss_pred             cCCeEEEcCC--CCHHHHHHHHHHhcCC--CCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecccceEE----
Confidence            3445666553  3578999999988721  25678889998 444 46899999883 234566666666555333    


Q ss_pred             EeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC-CCccccchHHHHh-cCcEEEEEecCeeEecCChHHHH
Q 022113           91 MEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-TSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYI  168 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~  168 (302)
                      .++ +|++..+.|++..    ......++|+++.+..+.... .....+....+.. ..++..+..+++|+||+||++|.
T Consensus       138 ~~~-~g~~~~~~e~~~l----~~~~~p~~f~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~  212 (223)
T 2xwl_A          138 VDA-NGAVLGTPERAGL----RAVQTPQGFHADVLRRAYARATAGGVTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLV  212 (223)
T ss_dssp             ECT-TSBEEECCCGGGE----EEECSCEEEEHHHHHHHHTTCCSCCCCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHH
T ss_pred             EcC-CCcEEeecChHHh----eeeeCCcccCHHHHHHHHHHhhCCCCccHHHHHHHcCCCEEEEECCcccccccCHHHHH
Confidence            253 6888888887632    111235788887765443221 1111222222222 35677777788999999999998


Q ss_pred             HHHHHH
Q 022113          169 TGLRLY  174 (302)
Q Consensus       169 ~a~~~~  174 (302)
                      .+...+
T Consensus       213 ~a~~~l  218 (223)
T 2xwl_A          213 LAEAVL  218 (223)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            886654

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=98.13  E-value=6.6e-06  Score=68.51  Aligned_cols=137  Identities=7%  Similarity=-0.041  Sum_probs=86.3

Q ss_pred             CCChHHHHHcHhhhcc--C--CCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCC-c
Q 022113           25 LGTAGPLALARDKLID--D--TGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTG-K   97 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~--~--~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~-~   97 (302)
                      .|++++++.++..+..  .  ..+.++++.||+ +. ..++.++++.|.+.++  .+++.+..++     +..++ +| +
T Consensus        84 ~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~~~~~-----~~~~~-~g~~  155 (236)
T 2vsh_A           84 ADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVEAVDT-----IVEST-NGQF  155 (236)
T ss_dssp             SSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEECCSC-----EEECS-SSSB
T ss_pred             CchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEecccc-----EEEeC-CCCe
Confidence            5788899999888731  1  125678889999 54 4569999999987654  3455555554     22233 57 7


Q ss_pred             EEEEEecCCCCCCCeEEEEEEEeCHhhHhh-ccCCCC-Cc--cccchHHHHh-cCcEEEEEecCeeEecCChHHHHHHHH
Q 022113           98 VEKFVEKPKLFVGNKINAGIYLLNPAVLDR-IELRPT-SI--EKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus        98 v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~-l~~~~~-~~--~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                      +..+.+++..    ......++|+++.+.. ++.... ..  ..+.+..+.. ..++..+..+++|+||+||++|..++.
T Consensus       156 ~~~~~~~~~~----~~~~~p~~f~~~~l~~~~~~~~~~g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~  231 (236)
T 2vsh_A          156 ITDIPNRAHL----YQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKS  231 (236)
T ss_dssp             CCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTCCHHHHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             eeeecChHHh----eeecCCcEecHHHHHHHHHHHHhcCCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHH
Confidence            7777776522    1112478899887753 332110 00  0111223333 357888887889999999999988865


Q ss_pred             H
Q 022113          173 L  173 (302)
Q Consensus       173 ~  173 (302)
                      .
T Consensus       232 ~  232 (236)
T 2vsh_A          232 M  232 (236)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=97.93  E-value=6.3e-05  Score=62.23  Aligned_cols=153  Identities=10%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             HHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCC
Q 022113            7 EFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPS   84 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~   84 (302)
                      .+...++.++.++.++  .|..++++.+++.+..+ .+.++++.||. +. +.++.++++.|.+.+  .++++.+..+. 
T Consensus        65 ~~~~~~~~~v~~~~~~--~~~~~sv~~al~~~~~~-~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~-  138 (228)
T 2yc3_A           65 EYEESIDVDLSFAIPG--KERQDSVYSGLQEIDVN-SELVCIHDSARPLVNTEDVEKVLKDGSAVG--AAVLGVPAKAT-  138 (228)
T ss_dssp             TTTTTSSSEEEEECCC--SSHHHHHHHHHTTSCTT-CSEEEEEETTCTTCCHHHHHHHHHHHHHHS--EEEEEEECCSC-
T ss_pred             HHHHhCCCcEEEECCC--CCHHHHHHHHHHhhccC-CCEEEEecCCCccCCHHHHHHHHHHHHhcC--ceEEEEeccce-
Confidence            3444566678777642  58889999999988531 25677889997 44 456899999887654  34445554432 


Q ss_pred             CcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhH-hhcc---CCCCCccccchHHHHh-cCcEEEEEecCeeE
Q 022113           85 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIE---LRPTSIEKEVFPKIAL-EGKLFAMVLPGFWM  159 (302)
Q Consensus        85 ~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~---~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~  159 (302)
                         +..+++ ++.+..+.+++   ...... ..|+|+++.+ +.++   .....+ .+....+.+ ..++.....+..|+
T Consensus       139 ---~~~~~~-~~~v~~~~~~~---~~~~~~-~~~~f~~~~l~~~~~~~~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~  209 (228)
T 2yc3_A          139 ---IKEVNS-DSLVVKTLDRK---TLWEMQ-TPQVIKPELLKKGFELVKSEGLEV-TDDVSIVEYLKHPVYVSQGSYTNI  209 (228)
T ss_dssp             ---CCCBCT-TSCBCCCCSCC---CCEEEE-EEEEECHHHHHHHHHHHHHHTCCC-CSTTHHHHHSSSCCEEEECCTTCC
T ss_pred             ---EEEEcC-CCceEEecCcc---ceEEEe-CCcEEEHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCceEEEeCCcccc
Confidence               112232 34454332222   112333 4899998655 3332   112222 233333333 34565444456799


Q ss_pred             ecCChHHHHHHHHHH
Q 022113          160 DIGQPRDYITGLRLY  174 (302)
Q Consensus       160 digt~~~~~~a~~~~  174 (302)
                      ||+||++|..+...+
T Consensus       210 dIdtpeDl~~a~~~l  224 (228)
T 2yc3_A          210 KVTTPDDLLLAERIL  224 (228)
T ss_dssp             CCCSHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHH
Confidence            999999998886544

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=97.83  E-value=2.9e-05  Score=65.28  Aligned_cols=151  Identities=9%  Similarity=0.026  Sum_probs=93.0

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhcc----CCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcce
Q 022113           15 KIICSQETEPLGTAGPLALARDKLID----DTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGV   88 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~----~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   88 (302)
                      .+.++..  +.+..++++++++.+..    ...+.++++.||.  +.+..+.++++.|.+.++  .+++.+..+    .+
T Consensus        75 ~~~~~~~--~~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a--~i~~~~~~d----~i  146 (246)
T 3f1c_A           75 RIVVIEG--GEDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA--VDTVIEALD----TI  146 (246)
T ss_dssp             TEEEEEC--CSSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE--EEEEEECSS----CE
T ss_pred             CEEEECC--CCchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEeccc----eE
Confidence            4555543  34678899999998853    1136789999998  445669999999988764  344455444    34


Q ss_pred             EEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhH-hhccCCCCC---ccccchHHHHh-cCcEEEEEecCeeEecCC
Q 022113           89 VVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIELRPTS---IEKEVFPKIAL-EGKLFAMVLPGFWMDIGQ  163 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~~~~~~---~~~~~~~~l~~-~~~v~~~~~~g~~~digt  163 (302)
                      +..++ ++.+....+++..    +..-..++|+.+.| +.++.-...   ...+....+.+ ..++..+..+.+|++|++
T Consensus       147 ~~~~~-~~~v~~~~~r~~l----~~~qtpq~f~~~~L~~a~~~~~~~~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt  221 (246)
T 3f1c_A          147 VESSN-HEVITDIPVRDHM----YQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKITT  221 (246)
T ss_dssp             EECSS-SSBCCBCCCGGGE----EEEEEEEEEEHHHHHHHHHTSCHHHHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCS
T ss_pred             EEecC-CCeEEEecChHHh----hhhcCCceeEHHHHHHHHHHHHHcCCCccCcHHHHHHHcCCCEEEEeCCCCccCcCC
Confidence            44432 4566655556531    12224578886655 333221000   01122222333 357888888889999999


Q ss_pred             hHHHHHHHHHHHHhh
Q 022113          164 PRDYITGLRLYLDSL  178 (302)
Q Consensus       164 ~~~~~~a~~~~l~~~  178 (302)
                      |+++..++..+..+.
T Consensus       222 ~~Dl~~ae~~l~~~~  236 (246)
T 3f1c_A          222 PYDLKVANAIIQERI  236 (246)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999988775443

>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*

Probab=97.81  E-value=4.2e-05  Score=70.58  Aligned_cols=106  Identities=16%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCCCChHHHHHc-----HhhhccCCCCcEEEEeCCeecC-cCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeC-
Q 022113           22 TEPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISE-YPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEE-   93 (302)
Q Consensus        22 ~~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~-   93 (302)
                      ..|.|||+++..+     ++.+.....+.++|.++|.+.. .|+ .++..|.++++++++.+.+..++ ..+|++..+. 
T Consensus       186 ~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~-~llg~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~  264 (505)
T 2oeg_A          186 WAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK-RVLAYMEKEKIDFLMEVCRRTESDKKGGHLARQTV  264 (505)
T ss_dssp             EECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-HHHHHHHHHTCSEEEEEEECCTTCCSSEEEEEEEE
T ss_pred             cCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-HHHHHHHhcCCcEEEEEEEecCCccceeEEEEecc
Confidence            3467999998755     3433222237899999999874 567 89999999999999999988776 5788887731 


Q ss_pred             ----CCCc-------E--EEEEecCCCC--------CCCeEEEEEEEeCHhhHhhc
Q 022113           94 ----STGK-------V--EKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI  128 (302)
Q Consensus        94 ----~~~~-------v--~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l  128 (302)
                          .+|+       +  +++.|-|...        .-.+.|++..+|+-+++..+
T Consensus       265 ~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~~g~~~f~~~Ninn~~~~l~~l~~~  320 (505)
T 2oeg_A          265 YVKGKDGQPDAEKRVLLLRESAQCPKADMESFQDINKYSFFNTNNLWIRLPVLLET  320 (505)
T ss_dssp             EECCSSSCCCEEEEEEEEEEGGGSCGGGHHHHHCTTTTCEEEEEEEEEEHHHHHHH
T ss_pred             cccccCCccccccCceeEEEeccCChhhhhcccCccccCeeEEEEEEEEHHHHHHH
Confidence                2566       3  3333334321        12357899999998877544

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=97.74  E-value=0.00016  Score=59.77  Aligned_cols=145  Identities=14%  Similarity=0.098  Sum_probs=84.1

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccC----CCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcce
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDD----TGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGV   88 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~----~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   88 (302)
                      .+.++  ....|++++++.++..+...    ..+.++++.||. +.+ ..+.++++.|.+.+.. .+++.+..++.    
T Consensus        74 ~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~----  146 (231)
T 1vgw_A           74 VRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GILAVPVADTL----  146 (231)
T ss_dssp             SEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEEEEECCSCE----
T ss_pred             ceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEEEeecccce----
Confidence            35554  34679999999999887320    136789999998 444 4588999988665422 34455544431    


Q ss_pred             EEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhc-cCCC-CCccccchHHHHh-cCcEEEEEecCeeEecCChH
Q 022113           89 VVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI-ELRP-TSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPR  165 (302)
Q Consensus        89 v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l-~~~~-~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~  165 (302)
                       ...+ +|++....++   .. .+.....++|+.+.|..+ .... ..+ .+....+.. ..++..+..++.|+||+||+
T Consensus       147 -~~~~-~g~i~~~~~~---~~-~~~~~~p~~f~~~~l~~~~~~~~~~g~-~~~~~~~~~~~~~v~~v~~~~~~~dIdtpe  219 (231)
T 1vgw_A          147 -KRAE-SGQISATVDR---SG-LWQAQTPQLFQAGLLHRALAAENLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQ  219 (231)
T ss_dssp             -EEES-SSBEEEEECC---TT-EEEEEEEEEEEHHHHHHHHHC----CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHH
T ss_pred             -EEeC-CCceEecCCh---HH-heeeeCCcEecHHHHHHHHHHHhhcCC-CcHHHHHHHcCCCEEEEECCccccCcCCHH
Confidence             1222 4555543332   11 122224889998877543 2211 111 111111111 35677777778899999999


Q ss_pred             HHHHHHHH
Q 022113          166 DYITGLRL  173 (302)
Q Consensus       166 ~~~~a~~~  173 (302)
                      +|..+...
T Consensus       220 Dl~~a~~~  227 (231)
T 1vgw_A          220 DAYIVRLL  227 (231)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99887653

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=97.63  E-value=0.0014  Score=52.54  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=77.0

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee--cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI--SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l--~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      .|+++.+ .+....|++++++.++..+.. ..+.++++.||+.  ...++.++++.  +.++++++...           
T Consensus        67 ~~~~~~~-~~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~-----------  131 (199)
T 2waw_A           67 DGLDIVL-VDDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY-----------  131 (199)
T ss_dssp             TTSEEEE-CCCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----------
T ss_pred             CCCEEEE-CCCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----------
Confidence            4666544 244567999999999998832 1368999999993  35558888876  44444332211           


Q ss_pred             EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhc--CcEEEEEe-cCeeEecCChHH
Q 022113           90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRD  166 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~--~~v~~~~~-~g~~~digt~~~  166 (302)
                           +++-    .            .-++|+++.+..+.....+   .-...++.+  .++..+.. +++|.||+||++
T Consensus       132 -----~g~~----~------------~P~~~~~~~l~~~~~~~~~---~~~~~~l~~~~~~v~~~~~~~~~~~dIdtpeD  187 (199)
T 2waw_A          132 -----ANGI----G------------HPFWVSRGVFGDLAELHGD---KGVWRLIESGRHGVRRIRVDADVPLDVDTWDD  187 (199)
T ss_dssp             -----TTEE----E------------EEEEEEGGGHHHHHTCSST---TCHHHHHHSSSSCEEEEECSSCCCCCCSSHHH
T ss_pred             -----CCcc----c------------CCEEEcHHHHHHHHhcCCC---HHHHHHHHhCcccEEEEEcCcccccCCCCHHH
Confidence                 1110    0            1247888888766532111   113344444  35666666 468999999999


Q ss_pred             HHHHHHHH
Q 022113          167 YITGLRLY  174 (302)
Q Consensus       167 ~~~a~~~~  174 (302)
                      |..+...+
T Consensus       188 l~~~~~~~  195 (199)
T 2waw_A          188 YERLLASV  195 (199)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98886644

>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}

Probab=97.61  E-value=0.00019  Score=64.22  Aligned_cols=127  Identities=21%  Similarity=0.252  Sum_probs=91.4

Q ss_pred             hhHHHHHhhcCCc---EEEEEec---------------------CCCCCChHHHHHcH-----hhhccCCCCcEEEEeCC
Q 022113            2 LNFLKEFEAKLGI---KIICSQE---------------------TEPLGTAGPLALAR-----DKLIDDTGEPFFVLNSD   52 (302)
Q Consensus         2 ~~~~~~~~~~~g~---~i~~~~~---------------------~~~~Gt~~al~~a~-----~~i~~~~~~~~lv~~gD   52 (302)
                      ++|+++ .+.+|+   +|.|+.|                     ..|.|+|+.+....     +.+....-+.+.+.+.|
T Consensus       109 ~~~f~~-~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~nvD  187 (405)
T 3oc9_A          109 NNYFKE-HQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVD  187 (405)
T ss_dssp             HHHHHH-TGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEECTT
T ss_pred             HHHHHh-CcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEeCC
Confidence            467777 566777   4887664                     45899999877643     22222222577888889


Q ss_pred             e-ecCcCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeCCCCcEEEEEecCCCC---------CCCeEEEEEEEeC
Q 022113           53 V-ISEYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKLF---------VGNKINAGIYLLN  121 (302)
Q Consensus        53 ~-l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~~---------~~~~~~~Giy~~~  121 (302)
                      . +.......++..|.++++++++-+++..++ .+.|.+...+...+|+++.|.|...         .-+..|.++++|+
T Consensus       188 N~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~dg~~~vvEysei~~e~e~~~~~g~l~fn~~Ni~~h~fs  267 (405)
T 3oc9_A          188 NILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQERIKVVEYTELTDELNKQLSNGEFIYNCGHISINGYS  267 (405)
T ss_dssp             BTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEETTEEEEECGGGCCTTTTCBCTTSCBSSCEEEEEEEEEE
T ss_pred             CcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEECCeeEEEEEeeCCHHHhhcCCCCceeeccceeEeeecC
Confidence            9 888888899999999999999999988766 7788887542233677777766531         1246788999999


Q ss_pred             HhhHhhcc
Q 022113          122 PAVLDRIE  129 (302)
Q Consensus       122 ~~~l~~l~  129 (302)
                      .++++.+.
T Consensus       268 ~~fL~~i~  275 (405)
T 3oc9_A          268 TSFLEKAA  275 (405)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99997664

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=97.35  E-value=0.0025  Score=51.07  Aligned_cols=121  Identities=13%  Similarity=0.129  Sum_probs=71.1

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      +++++.+ .+....|++++++.++..+.. ..+.++++.||+ +. +..+.++++.  +.+.++++...           
T Consensus        67 ~~~~~~~-~~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~-----------  131 (197)
T 2wee_A           67 DGTDVVV-VEDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY-----------  131 (197)
T ss_dssp             TTSEEEE-CC----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----------
T ss_pred             CCCEEEE-CCCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----------
Confidence            4665543 233457999999999998731 126799999999 44 4558888876  33334322111           


Q ss_pred             EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhc--CcEEEEEe-cCeeEecCChHH
Q 022113           90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVL-PGFWMDIGQPRD  166 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~--~~v~~~~~-~g~~~digt~~~  166 (302)
                           +|+.    ..            -++|++++|..+.....   ..-+..+++.  .++..+.. +++|.|++||++
T Consensus       132 -----~g~~----~~------------P~~~~~~~l~~l~~~~~---~~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeD  187 (197)
T 2wee_A          132 -----ADGV----GH------------PFWFSRTVFGELARLHG---DKGVWKLVHSGRHPVRELAVDGCVPLDVDTWDD  187 (197)
T ss_dssp             -----TTEE----EE------------EEEEEGGGHHHHHTCCS---TTHHHHHHHCTTSCEEEEECSSCCCCCCSSHHH
T ss_pred             -----CCCc----CC------------CEEECHHHHHHHHhCCC---ChhHHHHHHhCcccEEEEEcCcccccCCCCHHH
Confidence                 1211    01            13788888877652111   1123344444  35666665 468999999999


Q ss_pred             HHHHH
Q 022113          167 YITGL  171 (302)
Q Consensus       167 ~~~a~  171 (302)
                      |..+.
T Consensus       188 l~~~~  192 (197)
T 2wee_A          188 YRRLL  192 (197)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97764

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=97.30  E-value=0.0023  Score=51.32  Aligned_cols=115  Identities=19%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHH-----cCCcEEEEEEeCCCCCCcc
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKA-----HGGEASIMVTKVDEPSKYG   87 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~g   87 (302)
                      .+.++. ....|++++++.++..+ .   +.++++.||+  +.+..+.++++.|.+     .+.+.++.+.+.....   
T Consensus        69 ~~~~~~-~~~~g~~~si~~al~~~-~---~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~---  140 (196)
T 3rsb_A           69 NIVVID-TSGKGYIEDLNECIGYF-S---EPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPKEKYP---  140 (196)
T ss_dssp             EEEE---------CCCCCTTTTTC-S---SCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEETTTCC---
T ss_pred             CEEEEE-CCCCCcHHHHHHHHHhC-C---CCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEccccC---
Confidence            555543 45789999999999987 3   7999999999  445669999999986     5556666666653221   


Q ss_pred             eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHH
Q 022113           88 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY  167 (302)
Q Consensus        88 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~  167 (302)
                                      .|......+..+++..++.+.                    .......+.+++...||+||++|
T Consensus       141 ----------------~~~~~~~~~~~~~l~~l~~~~--------------------~~~~~~~~~~~~~~~DIDt~eDl  184 (196)
T 3rsb_A          141 ----------------NPSIDFNGLVPADINVVSPKH--------------------GYQKEEIMVIDELIFNINTKDDL  184 (196)
T ss_dssp             ----------------SCSCCSSSEEEEEEEEECSCS--------------------SCCCEEEEECSSCCEECCSHHHH
T ss_pred             ----------------CCCeeeccccceeeEEecCCC--------------------CcceeEEEEecceEEecCCHHHH
Confidence                            222111233344555554322                    01122233444667899999999


Q ss_pred             HHHHHH
Q 022113          168 ITGLRL  173 (302)
Q Consensus       168 ~~a~~~  173 (302)
                      ..+...
T Consensus       185 ~~ae~l  190 (196)
T 3rsb_A          185 KLAEML  190 (196)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            887643

>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*

Probab=97.23  E-value=0.00065  Score=62.60  Aligned_cols=124  Identities=16%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             hhHHHHHhhcCCc---EEEEEecC----------------------CCCCChHHHHHcH-----hhhccCCCCcEEEEeC
Q 022113            2 LNFLKEFEAKLGI---KIICSQET----------------------EPLGTAGPLALAR-----DKLIDDTGEPFFVLNS   51 (302)
Q Consensus         2 ~~~~~~~~~~~g~---~i~~~~~~----------------------~~~Gt~~al~~a~-----~~i~~~~~~~~lv~~g   51 (302)
                      ++|+++ .+.+|+   +|.++.|+                      .|.|+|+.+....     +.+....-+.+.+.+.
T Consensus       178 ~~~~~~-~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v~~v  256 (486)
T 2yqc_A          178 ESFFIE-NNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCV  256 (486)
T ss_dssp             HHHHHH-TGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEET
T ss_pred             HHHHhh-ccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEEECC
Confidence            466766 556776   35555543                      5889999886553     2221212366777888


Q ss_pred             Ceec--CcCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeCCCC--cEEEEEecCCC------C------CCCeEE
Q 022113           52 DVIS--EYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTG--KVEKFVEKPKL------F------VGNKIN  114 (302)
Q Consensus        52 D~l~--~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~~~~--~v~~~~ekp~~------~------~~~~~~  114 (302)
                      |.+.  ..| ..++..|.++++++++.+++..++ .+.|.+...+.+|  +++++.|+|..      .      ..+..|
T Consensus       257 DN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~~~~~~~~~~~~~~~N  335 (486)
T 2yqc_A          257 DNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKDPQDSSKLFLRAAN  335 (486)
T ss_dssp             TBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHHCEETTEEEEESSCEEE
T ss_pred             CCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhhccccccccccccccee
Confidence            9744  345 457888989999999988887544 6788877542234  47777777732      1      236889


Q ss_pred             EEEEEeCHhhHhh
Q 022113          115 AGIYLLNPAVLDR  127 (302)
Q Consensus       115 ~Giy~~~~~~l~~  127 (302)
                      +|+|+|+.++++.
T Consensus       336 i~~~~~~l~~L~~  348 (486)
T 2yqc_A          336 IVNHYYSVEFLNK  348 (486)
T ss_dssp             EEEEEEEHHHHHH
T ss_pred             EEEEEEeHHHHHH
Confidence            9999999999876

>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}

Probab=97.19  E-value=0.00078  Score=56.07  Aligned_cols=141  Identities=12%  Similarity=0.034  Sum_probs=82.8

Q ss_pred             EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeC
Q 022113           16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEE   93 (302)
Q Consensus        16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~   93 (302)
                      +.++.+  ..|+..+++.++..+..   +.+++++||. +.+ ..+.++++.+.+.+  ..+.+.+..++..+    .+ 
T Consensus        84 v~~~~~--~~~~~~~i~~al~~~~~---~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~~----~~-  151 (236)
T 2px7_A           84 AVFLEG--GATRQASVARLLEAASL---PLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVPDTLMA----PE-  151 (236)
T ss_dssp             CEEEEC--CSSHHHHHHHHHHHCCS---SEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECCSEEEE----EC-
T ss_pred             cEEEeC--CCchHHHHHHHHHHcCC---CeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecCCcEEE----ec-
Confidence            344443  24678899999988752   6789999997 544 45889998887653  34444554443221    22 


Q ss_pred             CCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhh-ccC---CCCCccccchHHHH-hcCcEEEEEecCeeEecCChHHHH
Q 022113           94 STGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDR-IEL---RPTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRDYI  168 (302)
Q Consensus        94 ~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~-l~~---~~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~~~  168 (302)
                       +|++..+.+++..   .... ..++|+++.|.. ++.   ....+ .+....+. ...++..+..++.|.||+||++|.
T Consensus       152 -~G~v~~~~~~~~~---~~~~-~~~~f~~~~l~~~~~~~~~~g~~~-~d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~  225 (236)
T 2px7_A          152 -GEAYGRVVPREAF---RLVQ-TPQGFFTALLREAHAYARRKGLEA-SDDAQLVQALGYPVALVEGEATAFKITHPQDLV  225 (236)
T ss_dssp             -SSSCEEEECGGGC---EEEC-SCEEEEHHHHHHHHHHHHHHTCCC-SSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHH
T ss_pred             -CCeEEecCChHhh---cccc-CCeEEcHHHHHHHHHHHHhcCCCc-hhHHHHHHHcCCcEEEEECCccccCCCCHHHHH
Confidence             5777766654321   1122 356778776633 221   01111 11111111 134677777778999999999998


Q ss_pred             HHHHHH
Q 022113          169 TGLRLY  174 (302)
Q Consensus       169 ~a~~~~  174 (302)
                      .+...+
T Consensus       226 ~a~~~l  231 (236)
T 2px7_A          226 LAEALA  231 (236)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            886544

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=97.17  E-value=0.0029  Score=52.26  Aligned_cols=133  Identities=10%  Similarity=0.050  Sum_probs=75.1

Q ss_pred             ChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEec
Q 022113           27 TAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK  104 (302)
Q Consensus        27 t~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ek  104 (302)
                      ..++++.++..+.....+.++++.||. +.+ ..+.++++.+.+.+  ..+++.+..++    +...++ +| + .+.++
T Consensus        91 ~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~~~~~~----~~~~~~-~g-v-~~~~r  161 (234)
T 1vpa_A           91 RSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLALKNSDA----LVRVEN-DR-I-EYIPR  161 (234)
T ss_dssp             HHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEEECCSE----EEEEET-TE-E-EEECC
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEEecCCc----EEEECC-CC-c-ccCCh
Confidence            556788888877320124567788998 554 45889998887653  33444444332    223343 45 5 55543


Q ss_pred             CCCCCCCeE-EEEEEEeCHhhHhhccCCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113          105 PKLFVGNKI-NAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       105 p~~~~~~~~-~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      .     .+. .-..++|+.+.+..+-...... .+....+.. ..++..+..++.|.||+||++|..+...+
T Consensus       162 ~-----~~~~~~~p~~f~~~~l~~~~~~~~~~-~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l  227 (234)
T 1vpa_A          162 K-----GVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIA  227 (234)
T ss_dssp             T-----TEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHH
T ss_pred             h-----HeeeecCCccccHHHHHHHHHhcCCC-CcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHH
Confidence            1     222 1134578887765442221111 111111211 34566666667899999999998887644

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=97.08  E-value=0.00087  Score=54.29  Aligned_cols=112  Identities=13%  Similarity=0.048  Sum_probs=63.3

Q ss_pred             EEEec-CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHH-HHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           17 ICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAE-MIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        17 ~~~~~-~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~-~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      +++.+ ....|++++++.+++.+..   +.+++++||+ +.+.+ +.+ ++    +  .++++              ...
T Consensus        73 ~~v~~~~~~~g~~~~i~~al~~~~~---~~~lv~~~D~P~i~~~~i~~~l~----~--~~~~v--------------~~~  129 (201)
T 2e8b_A           73 PVVLDEFEESASIIGLYTALKHAKE---ENVFVLSGDLPLMKKETVLYVLE----N--FKEPV--------------SVA  129 (201)
T ss_dssp             CEEECCCSSCCHHHHHHHHHHHCSS---SEEEEEETTCTTCCHHHHHHHHH----T--CCSSE--------------EEE
T ss_pred             eEEecCCCCCCcHHHHHHHHHHcCC---CCEEEEeCCcCcCCHHHHHHHHh----c--CCEEE--------------Eec
Confidence            34443 3568999999999998853   7899999999 33443 555 54    1  12211              111


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccC----CCCCccccchHHHHhcCcEEEEEec--CeeE--ecCCh
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL----RPTSIEKEVFPKIALEGKLFAMVLP--GFWM--DIGQP  164 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~--g~~~--digt~  164 (302)
                        +|+             .....|+| |++++++.++.    +...     +..+++..++..+..+  +.|.  |++||
T Consensus       130 --~g~-------------~~p~~giy-~~~~~~~~l~~~~~~g~~~-----~~~~l~~~~~~~~~~~~~~~~~~~dintp  188 (201)
T 2e8b_A          130 --KTE-------------KLHTLVGV-YSKKLLEKIEERIKKGDYR-----IWALLKDVGYNEVEIPEELRYTLLNMNTK  188 (201)
T ss_dssp             --ESS-------------SEEEEEEE-EEGGGHHHHHHHHHTTCCC-----HHHHHHHHCCEEEECCGGGGGGGCCSCCC
T ss_pred             --CCc-------------eeeEEEEE-eChhHHHHHHHHHHcCCch-----HHHHHHHCCeEEeccccccchhhcCCCCH
Confidence              111             24578999 99998877642    2222     2233333345555553  5789  99999


Q ss_pred             HHHHHHHH
Q 022113          165 RDYITGLR  172 (302)
Q Consensus       165 ~~~~~a~~  172 (302)
                      ++|.++.+
T Consensus       189 edl~~~~~  196 (201)
T 2e8b_A          189 EDLKRILA  196 (201)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            99987654

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=96.79  E-value=0.024  Score=46.67  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=81.4

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.++.+.  .|+.++++.++..+..  .+.++++.||. +.+. .+.++++.+.+.+... +.+.+..+.    .-..+
T Consensus        75 ~v~~~~~~--~g~~~~i~~al~~~~~--~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~~~----~~~~~  145 (236)
T 1i52_A           75 QITVVDGG--DERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVRDT----MKRAE  145 (236)
T ss_dssp             TEEEEECC--SSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECCSC----EEEEC
T ss_pred             CEEEECCC--CCHHHHHHHHHHhcCC--CCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecccc----EEEEc
Confidence            45555432  5888999999988742  26789999998 4454 4888888776554233 334444332    11223


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEE-EEEEeCHhhHh-hccC---CCCCccccchHHHH-hcCcEEEEEecCeeEecCChHH
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINA-GIYLLNPAVLD-RIEL---RPTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRD  166 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~-Giy~~~~~~l~-~l~~---~~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~  166 (302)
                      +.++++....+.     ...... +.++|+.+.+. .+..   ....+ .+....+. ...++..+..++.|+||+||++
T Consensus       146 ~~~~~i~~~~~~-----~~i~~~~~p~~f~~~~l~~~~~~~~~~g~~~-td~~~~~~~~~~~v~~v~~~~~~~dIdtpeD  219 (236)
T 1i52_A          146 PGKNAIAHTVDR-----NGLWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPED  219 (236)
T ss_dssp             TTSSSEEEEECC-----TTCEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHH
T ss_pred             CCCCceeeccCh-----HhheeeeCCceecHHHHHHHHHHHHhcCCCc-ccHHHHHHHcCCCEEEEecCccccccCCHHH
Confidence            311455433211     122222 56677776553 2221   11111 11111111 1356777777788999999999


Q ss_pred             HHHHHHHH
Q 022113          167 YITGLRLY  174 (302)
Q Consensus       167 ~~~a~~~~  174 (302)
                      |..+...+
T Consensus       220 l~~a~~~~  227 (236)
T 1i52_A          220 LALAEFYL  227 (236)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887654

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=96.24  E-value=0.0051  Score=49.49  Aligned_cols=117  Identities=16%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             EEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCC
Q 022113           18 CSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEES   94 (302)
Q Consensus        18 ~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~   94 (302)
                      ++.++ ...|++++++.++..+..  .+.++++.||. +.+. .+.++++.+ +.+.++++...                
T Consensus        63 ~v~~~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~----------------  123 (197)
T 3d5n_A           63 VIYNPFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH----------------  123 (197)
T ss_dssp             EEECTTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE----------------
T ss_pred             EEECCCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe----------------
Confidence            44443 357999999999998853  26799999999 5554 477888776 44444332221                


Q ss_pred             CCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhc--CcEEEEEec--CeeEecCChHHHHHH
Q 022113           95 TGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE--GKLFAMVLP--GFWMDIGQPRDYITG  170 (302)
Q Consensus        95 ~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~--~~v~~~~~~--g~~~digt~~~~~~a  170 (302)
                      +++    ...|            .+|+++++..+.....  ... ...++++  .++..+..+  +.|+||+||++|..+
T Consensus       124 ~g~----~~~P------------~~~~~~~l~~l~~l~g--~~~-~~~~l~~~~~~v~~v~~~~~~~~~dIdTpeDl~~~  184 (197)
T 3d5n_A          124 KGE----RGNP------------VLISKSLFNEIEKLRG--DVG-ARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRL  184 (197)
T ss_dssp             TTE----ECSC------------EEEEHHHHHHHHHCCT--TCC-THHHHTTSCGGGEEEEECCGGGTCCTTTC------
T ss_pred             CCc----ccCC------------EEECHHHHHHHHccCC--Ccc-HHHHHHhCccCeEEEEcCCCCcccCCCCHHHHHHH
Confidence            111    0112            2788888876642111  011 2233333  345555543  578999999999776


Q ss_pred             HH
Q 022113          171 LR  172 (302)
Q Consensus       171 ~~  172 (302)
                      ..
T Consensus       185 ~~  186 (197)
T 3d5n_A          185 RD  186 (197)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=95.26  E-value=0.032  Score=44.89  Aligned_cols=38  Identities=13%  Similarity=0.007  Sum_probs=30.6

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHH
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEF   65 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~   65 (302)
                      .|++++|+.++..+..   +.++++.||+ +.+.+ +.++++.
T Consensus        77 ~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~  116 (201)
T 1e5k_A           77 PGPLAGMLSVMQQEAG---EWFLFCPCDTPYIPPDLAARLNHQ  116 (201)
T ss_dssp             CSHHHHHHHHHHHCCS---SEEEEEETTCTTCCTTHHHHHHHT
T ss_pred             CCHHHHHHHHHHhCCC---CcEEEEeCCcCcCCHHHHHHHHhh
Confidence            6999999999998853   6899999999 55554 7777765

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=94.95  E-value=0.086  Score=43.47  Aligned_cols=136  Identities=13%  Similarity=0.092  Sum_probs=81.0

Q ss_pred             hHHHHHcHhhhccC-CCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEec
Q 022113           28 AGPLALARDKLIDD-TGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK  104 (302)
Q Consensus        28 ~~al~~a~~~i~~~-~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ek  104 (302)
                      .+++++++..+... ..+.++++.||. +.+ ..+.++++.+.+ +.+..+...+..++-+|    .++ +|.+....+.
T Consensus        84 ~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~dt~~~----~~~-~g~v~~~~~r  157 (231)
T 3q80_A           84 TDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLSDTIKA----VDA-NGVVLGTPER  157 (231)
T ss_dssp             HHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCSSCEEE----ECT-TSBEEECCCG
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEeccCCEEE----EcC-CCcEEEecch
Confidence            58899999888531 125678889998 554 448889888865 24566777777776443    343 6777655432


Q ss_pred             CCCCCCCeEEEEEEEeCHhhHh-hccC--C---CCCccccchHHHH-hcCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113          105 PKLFVGNKINAGIYLLNPAVLD-RIEL--R---PTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       105 p~~~~~~~~~~Giy~~~~~~l~-~l~~--~---~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~~~~a~~~~  174 (302)
                      .   .-..+.| -++|+.+.|. .++.  .   ...+ .+-...+. ...++....-+..++.|++|+++..++..+
T Consensus       158 ~---~l~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~~~-TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l  229 (231)
T 3q80_A          158 A---GLRAVQT-PQGFTTDLLLRSYQRGSLDLPAAEY-TDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV  229 (231)
T ss_dssp             G---GEEEECS-CEEEEHHHHHHHHHHHTC-----CC-SSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred             h---heEEEcC-CcEEEHHHHHHHHHHHHhhcCCCCC-CcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence            1   1122333 5788877663 3221  1   1112 12222222 235666555555689999999998887644

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=94.42  E-value=0.33  Score=39.18  Aligned_cols=126  Identities=11%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             HHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCC
Q 022113            7 EFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPS   84 (302)
Q Consensus         7 ~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~   84 (302)
                      .+.+.+|+++.. ......|...+|+.++..+ .   +.+ ++.||+ +.+.+ +.++++.+.+.+.++++..   +   
T Consensus        53 ~~~~~~~~~~v~-d~~~~~G~~~si~~gl~~~-~---~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~---~---  120 (208)
T 3ngw_A           53 KLSSRYEAEFIW-DLHKGVGSIAGIHAALRHF-G---SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK---H---  120 (208)
T ss_dssp             HHHTTSCSCEEC-CTTCCCSHHHHHHHHHHHH-S---SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE---S---
T ss_pred             HHHHhcCCeEEe-cCCCCCChHHHHHHHHHHc-C---CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc---C---
Confidence            334446665432 1222346669999999988 4   677 999999 55555 8888888766555543322   1   


Q ss_pred             CcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhcc----CCCCCccccchHHHHhcCcEEEEEec-----
Q 022113           85 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE----LRPTSIEKEVFPKIALEGKLFAMVLP-----  155 (302)
Q Consensus        85 ~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~----~~~~~~~~~~~~~l~~~~~v~~~~~~-----  155 (302)
                                 |+     ..|-          ..+++++++..+.    .+...     +..++++.++.....+     
T Consensus       121 -----------g~-----~~Pl----------~al~~~~~~~~l~~~l~~G~~~-----~~~~l~~~~~~~v~~~~~~~~  169 (208)
T 3ngw_A          121 -----------DY-----PEPL----------LAYYAESAADELERAILQGIRK-----ILVPLERLNVVYYPVEKLRKF  169 (208)
T ss_dssp             -----------SS-----BCTT----------EEEECGGGHHHHHHHHHTTCCC-----THHHHHTSCEEEEEGGGGTTT
T ss_pred             -----------CC-----eeEE----------EEEEcHHHHHHHHHHHHcCCCC-----HHHHHHhCCEEEecHHHhccc
Confidence                       11     0110          3346666665443    22222     3445555555545543     


Q ss_pred             ----CeeEecCChHHHHHHHHHHH
Q 022113          156 ----GFWMDIGQPRDYITGLRLYL  175 (302)
Q Consensus       156 ----g~~~digt~~~~~~a~~~~l  175 (302)
                          +.++|++||++|..+.+.+.
T Consensus       170 d~~~~~~~ninTpeDl~~~~~~~~  193 (208)
T 3ngw_A          170 DKELISFFNINTPDDLKRAEEICS  193 (208)
T ss_dssp             CTTCGGGCCCCSHHHHHHHHHHHH
T ss_pred             CcccceEEecCCHHHHHHHHHHhc
Confidence                35899999999988776553

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=90.82  E-value=0.19  Score=44.50  Aligned_cols=125  Identities=14%  Similarity=0.080  Sum_probs=69.1

Q ss_pred             CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEE
Q 022113           25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFV  102 (302)
Q Consensus        25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~  102 (302)
                      .|..++++.++..+..   +.++++.||. +.+ ..+.++++.+.+.  +..+.+.+..++.++.....+  ...+.. .
T Consensus        74 ~g~~~sv~~aL~~l~~---d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~~d~vk~v~~t~~--r~~l~~-~  145 (371)
T 1w55_A           74 DTRAESLKKALELIDS---EFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVADTTLFDNEALQ--REKIKL-I  145 (371)
T ss_dssp             SSHHHHHHHHHTTCCS---SEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCCSCEEETTEEEC--GGGCCE-E
T ss_pred             CChHHHHHHHHHhcCC---CeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEeecCeeeeeeecC--ccceee-c
Confidence            4566899999988753   6889999998 444 4588888877654  344545554443111100011  001100 0


Q ss_pred             ecCCCCCCCeEEEEEEEeCHhhHhhc-cCCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHHHHHH
Q 022113          103 EKPKLFVGNKINAGIYLLNPAVLDRI-ELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGL  171 (302)
Q Consensus       103 ekp~~~~~~~~~~Giy~~~~~~l~~l-~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~a~  171 (302)
                      .            .-++|+.+.+..+ ..... + .+....+.. ..++..+..++.|+||+||++|..++
T Consensus       146 ~------------~P~~f~~~~l~~~~~~~~~-~-td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae  202 (371)
T 1w55_A          146 Q------------TPQISKTKLLKKALDQNLE-F-TDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD  202 (371)
T ss_dssp             C------------SCEEEEHHHHHHHTSSCCC-C-SSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC
T ss_pred             C------------CcceecHHHHHHHHHhccc-c-cCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH
Confidence            1            1246777766433 22110 1 111111111 34677666677899999999997764

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=84.24  E-value=4.8  Score=36.39  Aligned_cols=69  Identities=9%  Similarity=0.021  Sum_probs=51.7

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEE
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS   74 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~   74 (302)
                      +.+.++.++.+.++.++..++..|-+.|...++.....   +.++++..|...+.+ +.++++.+.+....++
T Consensus        78 ~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~g---d~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v  147 (472)
T 1xhb_A           78 RPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRG---QVITFLDAHCECTAGWLEPLLARIKHDRRTVV  147 (472)
T ss_dssp             HHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCS---SEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCChHHHHHHHHHhccC---CeEEEECCCeEeCccHHHHHHHHHHhCCCEEE
Confidence            34556555555578888888778999999888887643   667778999987766 8899998877654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	302
d1mc3a_	291	c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}	2e-28
d1fxoa_	292	c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa	4e-27
d1lvwa_	295	c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri	3e-22
d1tzfa_	259	c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf	1e-15
d1yp2a2	307	c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr	2e-15
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	2e-10
d1fxja1	78	b.81.1.4 (A:252-329) N-acetylglucosamine 1-phospha	7e-04
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	2e-07
d2jf2a1	262	b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltra	1e-04
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	2e-07
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	2e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	5e-06
d2f9ca1	320	b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salm	0.004
d1j2za_	259	b.81.1.1 (A:) UDP N-acetylglucosamine acyltransfer	2e-07
d1g97a2	250	c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate	0.002
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.002
d2oi6a1	201	b.81.1.4 (A:252-452) N-acetylglucosamine 1-phospha	0.003
d1v3wa_	173	b.81.1.5 (A:) Ferripyochelin binding protein {Arch	0.004
d1g97a1	196	b.81.1.4 (A:252-447) N-acetylglucosamine 1-phospha	0.004

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (271), Expect = 2e-28
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 11/184 (5%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
           + GI++  +++  P G A    +    L  +      VL  ++     F+  +    A  
Sbjct: 71  EFGIQLEYAEQPSPDGLAQAFIIGETFLNGE--PSCLVLGDNIFFGQGFSPKLRHVAART 128

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL 130
             A++   +V +P ++GVV  ++   +     EKPK    N    G+Y  +  V++  + 
Sbjct: 129 EGATVFGYQVMDPERFGVVEFDD-NFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQ 187

Query: 131 RPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLYLDSLRKKSS 183
              S   E     +       G L   +L     W+D G     I     ++ ++ K+  
Sbjct: 188 VKPSERGELEITSINQMYLEAGNLTVELLGRGFAWLDTGTHDSLIEAST-FVQTVEKRQG 246

Query: 184 LKLA 187
            K+A
Sbjct: 247 FKIA 250

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  105 bits (263), Expect = 4e-27
 Identities = 35/171 (20%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 5   LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIE 64
           L    +  G+ +  + +  P G A    +              VL  ++   + F E++ 
Sbjct: 65  LLGDGSNWGLDLQYAVQPSPDGLAQAFLIGES--FIGNDLSALVLGDNLYYGHDFHELLG 122

Query: 65  FHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV 124
                   AS+    V +P +YGVV  ++  GK     EKP     N    G+Y  +  V
Sbjct: 123 SASQRQTGASVFAYHVLDPERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQV 181

Query: 125 LDRIELRPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYI 168
           +D       S   E     V       G+L   ++     W+D G     +
Sbjct: 182 VDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRGYAWLDTGTHDSLL 232

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 91.9 bits (228), Expect = 3e-22
 Identities = 39/184 (21%), Positives = 75/184 (40%), Gaps = 11/184 (5%)

Query: 11  KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG 70
           + G++     + EP G A    + +D + D   +   VL  +V   + F+E++    +  
Sbjct: 73  QFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSEILRRAASLE 130

Query: 71  GEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL 130
             A I    V +P  +GVV  +   G+V    EKP     N +  G+Y  +  V++    
Sbjct: 131 DGAVIFGYYVRDPRPFGVVEFDSE-GRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARR 189

Query: 131 RPTSIEKE-----VFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLRLYLDSLRKKSS 183
              S   E     V  +    GKL   ++     W+D G     +     ++++++K+  
Sbjct: 190 IEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTGTHDGLLEASS-FIETIQKRQG 248

Query: 184 LKLA 187
             +A
Sbjct: 249 FYIA 252

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 12/167 (7%)

Query: 15  KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEAS 74
            +      +   T G L    + + DD  E F     D +++      I+FHKAHG +A+
Sbjct: 96  NVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKAT 153

Query: 75  IMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS 134
           +  T    P ++G + ++    +  +   K    +   IN G ++LNP+V+D I+   T+
Sbjct: 154 LTATF--PPGRFGALDIQAGQVRSFQEKPKGDGAM---INGGFFVLNPSVIDLIDNDATT 208

Query: 135 IEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK 181
            E+E    +A +G+L A   PGFW  +   RD +     YL+ L +K
Sbjct: 209 WEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKV-----YLEGLWEK 250

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 72.7 bits (177), Expect = 2e-15
 Identities = 31/183 (16%), Positives = 66/183 (36%), Gaps = 29/183 (15%)

Query: 14  IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEA 73
            +          GTA  +        + T   + +L  D +    + + I+ H+    + 
Sbjct: 98  AQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADI 157

Query: 74  SIMVTKVDE--PSKYGVVVMEESTGKVEKFVEKPKLFVGNK------------------- 112
           ++    +DE   + +G++ ++E  G++ +F EKP+                         
Sbjct: 158 TVAALPMDEKRATAFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMP 216

Query: 113 --INAGIYLLNPAVLDRIE----LRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPR 165
              + GIY+++  V+  +             EV P     G ++ A +  G+W DIG   
Sbjct: 217 FIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIE 276

Query: 166 DYI 168
            + 
Sbjct: 277 AFY 279

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 9/66 (13%), Positives = 24/66 (36%)

Query: 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 251
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 252 WHSTVG 257
              T+G
Sbjct: 71  AACTIG 76

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 78

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 210 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG 269
            G DV +    ++E  V     T+   V+I     I +S+IG    +  +  VE+   L 
Sbjct: 17  HGRDVEIDTNVIIEGNV-----TLGHRVKIGTGCVIKNSVIGDDCEISPYTVVED-ANLA 70

Query: 270 EDVHV 274
               +
Sbjct: 71  AACTI 75

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSII 250
           I  +  VH +A + EG  IG +  +GP C+V   V +     +   V +  H  I     
Sbjct: 2   IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNE 61

Query: 251 GWHSTV-------GQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 292
            +            ++A       +G+   + + +  + G V      K
Sbjct: 62  IYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTK 110

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]} Length = 262

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-SSSIIGWHST 255
           ++ +SA +    ++    ++G    +        C V   V I +   + S  ++  H+ 
Sbjct: 1   MIDKSAFVHPTAIVEEGASIGANAHIGPF-----CIVGPHVEIGEGTVLKSHVVVNGHTK 55

Query: 256 VGQWARVENMTILGEDVHVCDEIYSNGGV 284
           +G+   +     +GE             V
Sbjct: 56  IGRDNEIYQFASIGEVNQDLKYAGEPTRV 84

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 254
           N +     +I     I     +     +   V + R  +  G RI  +  I SS +    
Sbjct: 63  NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREEC 122

Query: 255 TVGQWARVE-NMTILGEDV 272
            +   ARV     IL    
Sbjct: 123 AIYGDARVLNQSEILAIQG 141

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 194 GNVLV-HESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW 252
           G+  +  E+A    G  I  +  +   C + + VR+     +    I   A IS ++   
Sbjct: 55  GDCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQ 114

Query: 253 HSTVGQWARVENMTILGEDVHV 274
            S+V +   +     +     +
Sbjct: 115 SSSVREECAIYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 10/73 (13%), Positives = 25/73 (34%)

Query: 190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 249
           A       +  +A+I + C +  +V +G    ++         +   V I+  +      
Sbjct: 64  AMAFAGTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECA 123

Query: 250 IGWHSTVGQWARV 262
           I   + V   + +
Sbjct: 124 IYGDARVLNQSEI 136

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 189 GANIVGNVLVHESAQIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHA 243
           G  I GN  + +   +     IG         +  G  +   V +   +V     I   A
Sbjct: 69  GTEITGNARITQPCTLYNNVRIGDNVWIDRADISDGARISDNVTIQSSSVREECAIYGDA 128

Query: 244 CI--SSSIIG--------------WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 285
            +   S I+               +       +R+ +   L  +  +      +   V
Sbjct: 129 RVLNQSEILAIQGLTHEHAQILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEV 186

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]} Length = 259

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIK-KHACISS 247
           + I    ++   A+I +G  IG    +G G  ++ GV+L +  T+     +         
Sbjct: 1   SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 60

Query: 248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283
           +++G      ++    +  I+GED  + +    N G
Sbjct: 61  AVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINPG 96

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 14/178 (7%)

Query: 18  CSQETEPLGTAGPLALARDKLIDDTGEPFFVLN-SDVISEYPFAEMIEFHKAHGGEASIM 76
              ++E LGT   + +    L   +G    +   + +I+      +I+FH  H   A+I+
Sbjct: 68  FVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATIL 127

Query: 77  VTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKIN---AGIYLLNPAV----LDRIE 129
             + D P  YG +V  ++   +    +K       +I     G Y+ +       L  I 
Sbjct: 128 TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNIN 187

Query: 130 LRPTSIEKEVFPK----IALEGKLFAMVLPGFWMDIG--QPRDYITGLRLYLDSLRKK 181
                 E  +            K+ A  L  F   +G        T   +    +  K
Sbjct: 188 TNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHK 245

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 15/88 (17%), Positives = 34/88 (38%)

Query: 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIG 251
           + G +      +I    +I  +V +G    + +G  +    +     I  +  +  + + 
Sbjct: 11  LRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLA 70

Query: 252 WHSTVGQWARVENMTILGEDVHVCDEIY 279
              T+G +AR+     L E  HV + + 
Sbjct: 71  AACTIGPFARLRPGAELLEGAHVGNFVE 98

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 201

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-SRCTVMRGVRIKKHACISSSIIGWH 253
              +  +   G    I  +V +     +   V++ + C +   V          +++   
Sbjct: 8   RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDA 67

Query: 254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSI 295
           +            +      +      N   +   +  K S 
Sbjct: 68  NLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSK 109

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 173

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 15/114 (13%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRG--------------VRIK 240
           +  V E+A +    ++    +V P  V+   +                          I 
Sbjct: 16  SAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIG 75

Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS-NGGVVLPHKEIKS 293
           ++  I  + +   + VG +  +   +++ +   + D +    G VV P+KEI  
Sbjct: 76  EYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPD 129

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 196

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWH 253
              +    +I     I  +V +     + +   L+  T +    I   A I++S+I   
Sbjct: 8   ATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEES 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	302
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	99.94
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	99.94
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	99.83
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	99.76
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.66
d2cu2a2	268	Putative mannose-1-phosphate guanylyl transferase	99.65
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.61
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.61
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.59
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.58
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	99.56
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.56
d2jf2a1	262	UDP N-acetylglucosamine acyltransferase {Escherich	99.56
d1tzfa_	259	Glucose-1-phosphate cytidylyltransferase RfbF {Sal	99.53
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.48
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.48
d1fxja1	78	N-acetylglucosamine 1-phosphate uridyltransferase	99.46
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.45
d1j2za_	259	UDP N-acetylglucosamine acyltransferase {Helicobac	99.44
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.42
d1xhda_	172	Putative acetyltransferase/acyltransferase BC4754	99.4
d1qrea_	210	gamma-carbonic anhydrase {Archaeon Methanosarcina	99.39
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.39
d1g97a1	196	N-acetylglucosamine 1-phosphate uridyltransferase	99.38
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.37
d1jyka_	229	CTP:phosphocholine cytidylytransferase LicC {Strep	99.32
d1v3wa_	173	Ferripyochelin binding protein {Archaeon Pyrococcu	99.32
d1yp2a1	135	Glucose-1-phosphate adenylyltransferase small subu	99.29
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	99.28
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	99.28
d3tdta_	274	Tetrahydrodipicolinate-N-succinlytransferase, THDP	99.2
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.19
d1ocxa_	182	Maltose O-acetyltransferase {Escherichia coli [Tax	99.18
d1krra_	200	Galactoside acetyltransferase {Escherichia coli [T	99.15
d2oi6a1	201	N-acetylglucosamine 1-phosphate uridyltransferase	99.1
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	99.05
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	99.0
d1ssqa_	241	Serine acetyltransferase {Haemophilus influenzae [	98.8
d1mr7a_	203	Xenobiotic acetyltransferase {Enterococcus faecium	98.75
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.72
d2oi6a2	248	N-acetylglucosamine 1-phosphate uridyltransferase	98.71
d2f9ca1	320	Hypothetical protein YdcK {Salmonella enterica [Ta	98.64
d1xata_	208	Xenobiotic acetyltransferase {Pseudomonas aerugino	98.59
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	97.46
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	97.24
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	97.15
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	94.23
d1vpaa_	221	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	93.36
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	93.11
d2icya2	378	UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c	92.84
d1vgwa_	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	88.06
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	87.85
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	86.09

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.6e-26  Score=198.51  Aligned_cols=168  Identities=21%  Similarity=0.328  Sum_probs=143.5

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE   82 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~   82 (302)
                      +++++ ++++|++|+|+.|++++|||+|+++|.+++++  ++.|+++++|++++.|+.++++.|.++.+.+++.+.++++
T Consensus        64 ~~~~~-~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~~--~~~~lil~dD~~~~~dl~~ll~~h~~~~~~~~i~~~~V~~  140 (292)
T d1fxoa_          64 QLLGD-GSNWGLDLQYAVQPSPDGLAQAFLIGESFIGN--DLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD  140 (292)
T ss_dssp             HHHTT-SGGGTCEEEEEECSSCCCGGGHHHHTHHHHTT--SEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC
T ss_pred             HHhcc-ccccCeEEEEccCCCCCcHHHHHHhhhhhcCC--CceEEEEccccccCcCHHHHHHHHHhCCCCcEEEEEECCC
Confidence            45555 56789999999999999999999999999975  2455777888899999999999999999999999999999


Q ss_pred             CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCcc-----ccchHHHHhcCcEEEEEec-C
Q 022113           83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIE-----KEVFPKIALEGKLFAMVLP-G  156 (302)
Q Consensus        83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~~v~~~~~~-g  156 (302)
                      |.+||++.+|+ +++++.|.|||..+.++++++|+|+|++++++.+..-..+..     .++++.+++++++.++.+. |
T Consensus       141 p~~yGV~~~d~-~~ki~~~~EKP~~p~Snla~~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~~  219 (292)
T d1fxoa_         141 PERYGVVEFDQ-GGKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQLSVEIMGRG  219 (292)
T ss_dssp             GGGSEEEEECT-TSCEEEEEESCSSCSSSEEEEEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTCEEEEECCTT
T ss_pred             HHHCeEEEEcC-CCCEeEEEECCCCCCCCcEEEEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999986 899999999999999999999999999999877753333333     3456778888888877763 3


Q ss_pred             -eeEecCChHHHHHHHHHH
Q 022113          157 -FWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       157 -~~~digt~~~~~~a~~~~  174 (302)
                       +|+|+||+++|++|....
T Consensus       220 ~~W~D~Gt~~~l~~a~~~v  238 (292)
T d1fxoa_         220 YAWLDTGTHDSLLEAGQFI  238 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHH
T ss_pred             CEEEeCCCHHHHHHHHHHH
Confidence             699999999999998754

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.2e-26  Score=196.21  Aligned_cols=167  Identities=22%  Similarity=0.353  Sum_probs=141.2

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcE-EEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD   81 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~-lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~   81 (302)
                      +++++ +++||++|+|+.|++++|||+||..|.+++..   ++| ||+++|++++.++.++++.|.++.+++|+++.+++
T Consensus        64 ~~~~~-g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi~~---~~~~lvlgddi~~~~~~~~~l~~~~~~~~~atI~~~~V~  139 (291)
T d1mc3a_          64 RLLGD-GSEFGIQLEYAEQPSPDGLAQAFIIGETFLNG---EPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVM  139 (291)
T ss_dssp             HHHTT-SGGGTCEEEEEECSSCCCSTHHHHHTHHHHTT---SCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECS
T ss_pred             HHhCc-hHhhCcEEEEEECCCCCchHHHHHHHHHHhCC---CCeEEEECCCcccCcCHHHHHHHHHhCcCCcEEEEEECC
Confidence            34445 67899999999999999999999999999975   455 55666678899999999999998889999999999


Q ss_pred             CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccc-----cchHHHHhcCcEEEEEe-c
Q 022113           82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEK-----EVFPKIALEGKLFAMVL-P  155 (302)
Q Consensus        82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~-----~~~~~l~~~~~v~~~~~-~  155 (302)
                      +|.+||++.+|+ ++++..|.|||..+.++++++|+|+|++++++.+.....+-.+     ++++.+++.+++..+.+ .
T Consensus       140 dP~~yGVve~d~-~g~i~~i~EKP~~p~Sn~a~~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~~  218 (291)
T d1mc3a_         140 DPERFGVVEFDD-NFRAISLEEKPKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGR  218 (291)
T ss_dssp             CCSSSBBCEEET-TEEEEECCBSCSSCSCSEEEEEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECCT
T ss_pred             CcccCCCceecc-CcceeEEEECCCCCCCCeEEEEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEecC
Confidence            999999999996 7899999999999999999999999999999888654444333     34666777887776655 3


Q ss_pred             C-eeEecCChHHHHHHHHHH
Q 022113          156 G-FWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       156 g-~~~digt~~~~~~a~~~~  174 (302)
                      + +|+|+||++++.+|..+.
T Consensus       219 g~~W~D~Gt~~~l~~a~~~v  238 (291)
T d1mc3a_         219 GFAWLDTGTHDSLIEASTFV  238 (291)
T ss_dssp             TCEEEECCSHHHHHHHHHHH
T ss_pred             CCEEEeCCCHHHHHHHHHHH
Confidence            4 699999999999998754

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=7.7e-20  Score=157.80  Aligned_cols=162  Identities=23%  Similarity=0.333  Sum_probs=133.5

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV   89 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v   89 (302)
                      .++++++.|+.|++++|||+||+.|++++.+  ++.++++++|++++.++..+.+.|.+...++++++.+.++|..||++
T Consensus        72 ~~~~~~i~~v~e~~~~gta~Al~~a~~~l~~--~~~~li~~~d~~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~yG~i  149 (295)
T d1lvwa_          72 SQFGVRFSYRVQEEPRGIADAFIVGKDFIGD--SKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRPFGVV  149 (295)
T ss_dssp             GGGTSEEEEEECSSCCCGGGHHHHTHHHHTT--SCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSCCTTSEEE
T ss_pred             hhcCCEEEEEECCCCCCHHHHHHHHHHHcCC--CCEEEEeCCcceechhHHHHHHHHHhCCCCeEEEEEEcCCCccccEE
Confidence            5679999999999999999999999999965  24566677788999999999999999999999999999999999999


Q ss_pred             EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCcc-----ccchHHHHhcCcEEE--EEecCeeEecC
Q 022113           90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIE-----KEVFPKIALEGKLFA--MVLPGFWMDIG  162 (302)
Q Consensus        90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~~v~~--~~~~g~~~dig  162 (302)
                      .+++ +++|..|.|||..+.++++++|+|+|++.+|..+.....+..     .+++..++..+....  +....+|.|+|
T Consensus       150 ~~~~-~~~v~~~~EKp~~~~s~~~~~Giy~~n~~if~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~Dig  228 (295)
T d1lvwa_         150 EFDS-EGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIARRIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMAWLDTG  228 (295)
T ss_dssp             EECT-TSBEEEEEESCSSCSCSEECCSEEEECTTHHHHHHHCCCCTTSCCCHHHHHHHHHHTTCEEEEEECTTCEECCCS
T ss_pred             EECC-CCcEEEEeecccCcccceeecceEEECHHHHHHHHhcCCCcCCCeeccchHHHHHHhCCCeEEEcCCCcEEeCCC
Confidence            9986 789999999999888889999999999999977643222222     334556666665444  44467899999


Q ss_pred             ChHHHHHHHHHH
Q 022113          163 QPRDYITGLRLY  174 (302)
Q Consensus       163 t~~~~~~a~~~~  174 (302)
                      +++++.++....
T Consensus       229 t~~~l~~~s~~i  240 (295)
T d1lvwa_         229 THDGLLEASSFI  240 (295)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHH
Confidence            999999987654

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.76  E-value=5.3e-18  Score=146.71  Aligned_cols=163  Identities=18%  Similarity=0.324  Sum_probs=131.0

Q ss_pred             CcEEEEEecCC------CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCC
Q 022113           13 GIKIICSQETE------PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPS   84 (302)
Q Consensus        13 g~~i~~~~~~~------~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~   84 (302)
                      +....+..+..      .+||+++++.+++++.+...++|++++||++++.|+..+++.|+.+++++++.....+  ++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (307)
T d1yp2a2          91 GFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRAT  170 (307)
T ss_dssp             CEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHT
T ss_pred             ccceeeceeeeccccccccchhHHHHHhHHhhhccccceEEEecCcceeccchhhhhhhhhhccccceEEEEeccccccc
Confidence            44555555533      4699999999999997655678999999999999999999999999988887776654  456


Q ss_pred             CcceEEEeCCCCcEEEEEecCCCC---------------------CCCeEEEEEEEeCHhhHhhcc----CCCCCccccc
Q 022113           85 KYGVVVMEESTGKVEKFVEKPKLF---------------------VGNKINAGIYLLNPAVLDRIE----LRPTSIEKEV  139 (302)
Q Consensus        85 ~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~~l~~l~----~~~~~~~~~~  139 (302)
                      .||++.+|+ ++++..|.|+|...                     ...+.++|+|+|++++|..+.    ....++..++
T Consensus       171 ~~gvv~~d~-~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~  249 (307)
T d1yp2a2         171 AFGLMKIDE-EGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEV  249 (307)
T ss_dssp             TSEEEEECT-TSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTH
T ss_pred             ccceEEECC-CCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHH
Confidence            799999996 89999999998531                     235789999999999986552    2233456677


Q ss_pred             hHHHHhc-CcEEEEEecCeeEecCChHHHHHHHHHHHH
Q 022113          140 FPKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLD  176 (302)
Q Consensus       140 ~~~l~~~-~~v~~~~~~g~~~digt~~~~~~a~~~~l~  176 (302)
                      ++.+++. .++.++.++|+|.|+|||++|.+|+..+++
T Consensus       250 i~~li~~g~~v~~~~~~g~W~Digt~~~~~~a~~~ll~  287 (307)
T d1yp2a2         250 IPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITK  287 (307)
T ss_dssp             HHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGC
T ss_pred             HHHHHHCCCcEEEEEeCCeEEECcCHHHHHHHHHHHhc
Confidence            8877766 579999999999999999999999876543

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.66  E-value=2.6e-15  Score=120.81  Aligned_cols=124  Identities=14%  Similarity=0.081  Sum_probs=79.5

Q ss_pred             eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEc--CCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc
Q 022113          158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVH--ESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM  234 (302)
Q Consensus       158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~  234 (302)
                      +.-++++....+....+.+. .-.....++|++.|.+++.++  +++.|+++|+|++++.||++|.|+.++.|. ++.|+
T Consensus        50 ~iaIG~~~~R~~~~~~~~~~-~~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig  128 (193)
T d3bswa1          50 FIAIGNNEIRKKIYQKISEN-GFKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIG  128 (193)
T ss_dssp             EECCSCHHHHHHHHHHHHHT-TCCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEEECCcHHHHHHHHHhhhh-ccccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeecc
Confidence            45678876554444433222 122234466666666666663  356666666666666666666666666665 56677


Q ss_pred             cCCEECCCcEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113          235 RGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG  282 (302)
Q Consensus       235 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~  282 (302)
                      ++|.+++++.+. ++.|+++|+||+++.|.+++.||+++.|++++++..
T Consensus       129 ~~~~i~~~~~i~g~v~Ig~~~~IG~~s~I~~~v~Ig~~~~IgagsvV~~  177 (193)
T d3bswa1         129 EFSHVSVGAKCAGNVKIGKNCFLGINSCVLPNLSLADDSILGGGATLVK  177 (193)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             ccccccccccccccceeeccccCCceeeEcCCeEECCCCEECCCCEECc
Confidence            777777777764 377888888888888877777888877777777643

>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: mannose-1-phosphate guanylyl transferase
domain: Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.4e-16  Score=135.15  Aligned_cols=162  Identities=20%  Similarity=0.252  Sum_probs=115.1

Q ss_pred             hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHH--HHHH---HHHHcCCcEEEEEEeCCCCC
Q 022113           10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFA--EMIE---FHKAHGGEASIMVTKVDEPS   84 (302)
Q Consensus        10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~--~~~~---~~~~~~~~~~l~~~~~~~~~   84 (302)
                      +..+..+.++.|++++|||+|+..++..+....++.++|++||++++.++.  ..+.   .+.+++..+++.+.+..++.
T Consensus        67 ~~~~~~~~ii~E~~~~~t~~a~~~~~~~~~~~~~~~vlvl~~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  146 (268)
T d2cu2a2          67 RPYADGIRLLLEPLGRDTAGAVLLGVAEALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRPET  146 (268)
T ss_dssp             GGGCSSSEEEEESSCCHHHHHHHHHHHHHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSCCS
T ss_pred             hhhccccceeeeeecCCcccchhhHHHHHhccCCceeEEEecchhhcccHHHHHHHHHHHHHHhcCCeEeeecccccccc
Confidence            334555677889999999999999877664333578999999999877743  3333   23345677788888888889


Q ss_pred             CcceEEEeCCCC---cEEEEEecCCCC-------CCCeEEEEEEEeCHhhHhhc-cCC------------CCCccccchH
Q 022113           85 KYGVVVMEESTG---KVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRI-ELR------------PTSIEKEVFP  141 (302)
Q Consensus        85 ~~g~v~~d~~~~---~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l~~l-~~~------------~~~~~~~~~~  141 (302)
                      .||++.+++..+   +|..|.|||...       ...++|+|+|+|+++.|... ...            ......+.|+
T Consensus       147 ~yG~i~~~~~~~~~~~v~~f~EKp~~~~~~~~~~~~~~~N~Giy~f~~~~l~~~~~~~~p~i~~~~~~~~~~~~~~~~f~  226 (268)
T d2cu2a2         147 EYGYIRLGPREGAWYRGEGFVEKPSYAEALEYIRKGYVWNGGVFAFAPATMAELFRRHLPSHHEALERLLAGASLEEVYA  226 (268)
T ss_dssp             SSCEEEEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHCHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ccceEEeccccccchhhheeecccchhhhhhhhccCcccchhhhhcchHHHHHHHHhhhHHHHHHHHHHHhcchHHHHHh
Confidence            999999875222   799999999743       23689999999998877322 100            0011112222


Q ss_pred             H----------HHhcCcEEEEEecCeeEecCChHHHHHHH
Q 022113          142 K----------IALEGKLFAMVLPGFWMDIGQPRDYITGL  171 (302)
Q Consensus       142 ~----------l~~~~~v~~~~~~g~~~digt~~~~~~a~  171 (302)
                      .          +.+..++.++.++++|.|+||++++++..
T Consensus       227 ~l~~iSiDyavlEk~~~v~~v~~d~~W~DvGtw~s~~~~~  266 (268)
T d2cu2a2         227 GLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVF  266 (268)
T ss_dssp             TSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHH
T ss_pred             hCccccchhhhhcccCCceEEecCCCcCCCcCHHHHHHHh
Confidence            1          23457899999999999999999998754

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.61  E-value=5e-15  Score=124.75  Aligned_cols=59  Identities=29%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCc
Q 022113          185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHA  243 (302)
Q Consensus       185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~  243 (302)
                      ++++++.|+|++.|+++++||++|+|++++.||++|+|+++|.|. ++.|+++|.+.+++
T Consensus         2 ~Ih~sAiI~~~a~Ig~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~IG~~~~i~~~~   61 (259)
T d1j2za_           2 KIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFA   61 (259)
T ss_dssp             CBCTTCEECTTSEECTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTC
T ss_pred             cCCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEEeCCCEEeeecccCCcc
Confidence            355555555555555555555555555555555555555555554 34444444443333

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.3e-15  Score=103.52  Aligned_cols=71  Identities=13%  Similarity=0.266  Sum_probs=63.5

Q ss_pred             CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCC
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW  259 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~  259 (302)
                      ...|++++.|++++.|+++|+|.+++.||++|.||++|.|++|.|++++.|+++++|.+|+|++++.||++
T Consensus         8 ~~~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i~~~~Ig~~~~IGPf   78 (78)
T d1fxja1           8 RFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPF   78 (78)
T ss_dssp             GEEEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEEESEEECTTCEESCC
T ss_pred             eEEEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEEECCEECCCCEECcC
Confidence            35688899999999999999999999999999999999999999999999999999988888888888864

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.59  E-value=1.3e-14  Score=118.18  Aligned_cols=100  Identities=17%  Similarity=0.236  Sum_probs=81.2

Q ss_pred             ccccccccCceEecceEEcCCcEECCCCEE----CCCcEECCCCEECCCcEEe------------------------ceE
Q 022113          181 KSSLKLATGANIVGNVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS------------------------RCT  232 (302)
Q Consensus       181 ~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~------------------------~~~  232 (302)
                      ...+.+++++.|.+++.||+++.|+++|+|    +..++||++|.|+++|.|+                        ++.
T Consensus        26 ~~~a~I~p~A~i~g~V~IG~~~~Igp~~vIrgd~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (210)
T d1qrea_          26 DPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVY  105 (210)
T ss_dssp             CTTCEECTTCEEEESEEECTTCEECTTCEEEESSSCCEEECTTCEECTTCEEEECCSBCTTSCBCGGGCEEETTEEESEE
T ss_pred             CCCCEECCCCEEecceEECCCCEEccCeeeecccCCceEEcccceeeeeeEeccceeeccccccccCcccccccccccee
Confidence            345666777777777778888888888888    4567889999999999883                        478


Q ss_pred             EccCCEECCCcEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          233 VMRGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       233 i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      |+++|.|++++.|. ++.||++++||+++.|.+ +.||++|.|++++++.
T Consensus       106 IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~~-~~IG~~~vIg~~svv~  154 (210)
T d1qrea_         106 IGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFK-SKVGNNCVLEPRSAAI  154 (210)
T ss_dssp             ECTTCEECTTCEEEEEEEECTTCEECTTCEEEE-EEECTTCEECTTCEEE
T ss_pred             eccccccccccccccCCcccCCcEeeCCccccc-cccccCcEEecCcEec
Confidence            99999999999995 699999999999999964 5789999888776653

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.58  E-value=1.6e-14  Score=114.01  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCC
Q 022113          183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS  254 (302)
Q Consensus       183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~  254 (302)
                      .+.+++.+.|.+++.||+++.|+++|+|++.   +.||.++.+++++.+.     .+.+++++.+.+++.++++.+++++
T Consensus        18 ~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i~~~~   97 (172)
T d1xhda_          18 SAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDA   97 (172)
T ss_dssp             TCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTC
T ss_pred             CcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeecccccccccce
Confidence            3445555555556666666666666666432   4777888888888886     3789999999999999999999999


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      +|+.++.|.+++.||++|.|+++++|.++..+|+..
T Consensus        98 ~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~~~  133 (172)
T d1xhda_          98 LIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPPNT  133 (172)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEECTTE
T ss_pred             EEecccEeeCCcEEcCcccccceEEEeeCeEECCCe
Confidence            999999999999999999999999987666555443

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=99.56  E-value=5.1e-14  Score=113.06  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=92.7

Q ss_pred             cccCceEecceEEcCCcEEC--CCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCCCEECCCcE
Q 022113          186 LATGANIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR  261 (302)
Q Consensus       186 ~~~~~~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~  261 (302)
                      +.....|+|.+.|++++.|+  .++.|+++++|+++|.||++|.|. ++.|+++|.|++++.++. +.+..++.||++++
T Consensus        71 ~~~~~~I~p~a~I~~~~~I~~g~g~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~g~v~Ig~~~~  150 (193)
T d3bswa1          71 FKIVNLIHKSALISPSAIVEENAGILIMPYVVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCF  150 (193)
T ss_dssp             CCBCCEECTTCEECTTSEECTTSCCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCE
T ss_pred             cccceecCCCcEEeeeeEEccccCceEeeeeeecCCceeeeccccccccccceeeeccccccccccccccccceeecccc
Confidence            34457899999999999995  479999999999999999999997 799999999999999965 88999999999999


Q ss_pred             EccCcEECCCcEECCceEEcCCeEecCc
Q 022113          262 VENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       262 i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      |+.+++|.++++||+++++++++++-..
T Consensus       151 IG~~s~I~~~v~Ig~~~~IgagsvV~~d  178 (193)
T d3bswa1         151 LGINSCVLPNLSLADDSILGGGATLVKN  178 (193)
T ss_dssp             ECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CCceeeEcCCeEECCCCEECCCCEECcC
Confidence            9999999999999999999999986543

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.56  E-value=3e-14  Score=119.96  Aligned_cols=46  Identities=28%  Similarity=0.486  Sum_probs=26.8

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS  229 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~  229 (302)
                      +.++|++.|++++.|+++++||++|+|++++.||++|.|++++.|.
T Consensus         6 ~~I~p~a~I~~~~~Ig~~v~Ig~~~~I~~~v~Ig~~~~I~~~~~I~   51 (262)
T d2jf2a1           6 AFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVN   51 (262)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTEEECTTCEECSSCEEC
T ss_pred             CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeCCEEEc
Confidence            4455556666555666666666666655555555555555555553

>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase {Escherichia coli, gene lpxA [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Escherichia coli, gene lpxA [TaxId: 562]

Probab=99.56  E-value=2e-14  Score=121.00  Aligned_cols=42  Identities=14%  Similarity=0.162  Sum_probs=18.8

Q ss_pred             EEccCCEECCCcEEec--------cEECCCCEECCCcEEccCcEECCCcE
Q 022113          232 TVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVH  273 (302)
Q Consensus       232 ~i~~~~~i~~~~~i~~--------~~i~~~~~i~~~~~i~~~~~i~~~~~  273 (302)
                      .|++++.|++++.+..        +.||+++.|..++.|++++.||+++.
T Consensus        85 ~IG~~v~ig~~~~i~~~~~~~~~~T~IG~~~~i~~~~~I~h~~~IG~~~~  134 (262)
T d2jf2a1          85 EIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCI  134 (262)
T ss_dssp             EECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEECTTCEECSSCE
T ss_pred             EECCeeeecceEeccCccccCccceEECCCCEEecccccccccccCCCee
Confidence            4555555555555531        34444444444444444433333333

>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: Glucose-1-phosphate cytidylyltransferase RfbF
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=5e-13  Score=111.59  Aligned_cols=157  Identities=31%  Similarity=0.527  Sum_probs=131.3

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      ...+.++.+...+++++++..+.+....  +++|+++++|.+++.++.++++.|.......+....  .++..++.....
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  169 (259)
T d1tzfa_          94 PWNVTLVDTGDSSMTGGRLKRVAEYVKD--DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT--FPPGRFGALDIQ  169 (259)
T ss_dssp             CCEEEEEECCSSCCHHHHHHHTGGGTTT--SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE--CCCCCSEEEEEE
T ss_pred             ccceeEEeccccccccchhhhhhhhccC--CCceEEeccccccccchhhhhhhhcccccceeeccc--cccccCCceecc
Confidence            4567889999999999999999998765  478999999999999999999999888777766555  455567766655


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                        ..++..+.+.+.. ...+.++|+|++++++++.++....++..++++.+++++++.+|.++|+|.|++|++++..++.
T Consensus       170 --~~~i~~~~~~~~~-~~~~~~~G~y~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~v~~~~~~g~W~didt~~d~~~~~~  246 (259)
T d1tzfa_         170 --AGQVRSFQEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEG  246 (259)
T ss_dssp             --TTEEEEEEESCSC-CSCCEECCCEEECGGGGGGCCSTTCCTTTHHHHHHHHTTCEEEEEECSCEEECCSHHHHHHHHH
T ss_pred             --cceEEeeeecccc-ceeeecceeccccchhhhhcccCcCccHHHHHHHHHhcCCeEEEEeCCEEEECCCHHHHHHHHH
Confidence              4677777776644 4578899999999999999987777777889999999999999999999999999999988887


Q ss_pred             HHHH
Q 022113          173 LYLD  176 (302)
Q Consensus       173 ~~l~  176 (302)
                      .+.+
T Consensus       247 ~~~~  250 (259)
T d1tzfa_         247 LWEK  250 (259)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6654

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1.4e-13  Score=110.74  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             cccccCceEecceEE--cCCcEECCCCEECCCcEE--------CCCCEECCCcEEec-eEEccCCEECCCcEE-eccEEC
Q 022113          184 LKLATGANIVGNVLV--HESAQIGEGCLIGPDVAV--------GPGCVVESGVRLSR-CTVMRGVRIKKHACI-SSSIIG  251 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i--~~~~~i~~~~~i~~~~~i--------g~~~~i~~~~~i~~-~~i~~~~~i~~~~~i-~~~~i~  251 (302)
                      +.+.+++.|+|++++  |.++.||++|.|+++|+|        |++|.|++++.|.. +...+......+..+ ..++|+
T Consensus        55 ~~iG~~~~I~p~~~i~~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig  134 (200)
T d1krra_          55 ATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIG  134 (200)
T ss_dssp             SBCCSSCEECSCEEESCSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEEC
T ss_pred             CcCCCCCEEcCCEEEecCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceEEEc
Confidence            346666676666665  344455555554444433        22222222222221 111111111112222 346799


Q ss_pred             CCCEECCCcEEccCcEECCCcEECCceEE----cCCeE---ecCccccc
Q 022113          252 WHSTVGQWARVENMTILGEDVHVCDEIYS----NGGVV---LPHKEIKS  293 (302)
Q Consensus       252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v----~~~~v---~~~~~~~~  293 (302)
                      ++|+||.++.|.+++.||++|.|+++++|    +++++   .|+|.++.
T Consensus       135 d~v~IG~~~~I~~Gv~IG~~~vIgagSvV~kdvp~~~iv~G~PArvik~  183 (200)
T d1krra_         135 NNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVIRE  183 (200)
T ss_dssp             TTCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEETTTTEEEEE
T ss_pred             cCcccceeeecccccccCCCcEEeCCCEEeeEcCCCcEEEEeCCEEEEe
Confidence            99999999999999999999999999997    45554   36666653

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=2.8e-13  Score=106.86  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCCE
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHST  255 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~  255 (302)
                      +.+++++.|.+++.|++++.|+++|+|+.   .+++++++.++..+.+.     .+.++.++.+......+.+.|+++++
T Consensus        17 ~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~   96 (173)
T d1v3wa_          17 AFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVI   96 (173)
T ss_dssp             CEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEE
T ss_pred             cEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeecCCccc
Confidence            44455555555555555555555555542   33566666666666664     34556666666666667788888888


Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE  290 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~  290 (302)
                      ||.++.|.+++.||++|.|+++++|.+++.+|+.+
T Consensus        97 ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~~~  131 (173)
T d1v3wa_          97 IGISSVILDGAKIGDHVIIGAGAVVPPNKEIPDYS  131 (173)
T ss_dssp             ECTTCEECTTCEECSSEEECTTCEECTTCEECTTE
T ss_pred             ccceeeecCCEEEcceeEEcCCcEEeCCeEeCCCC
Confidence            88888888888888888888888877666655544

>d1fxja1 b.81.1.4 (A:252-329) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1e-13  Score=93.98  Aligned_cols=67  Identities=16%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             EECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113          209 LIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD  276 (302)
Q Consensus       209 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~  276 (302)
                      .|.+.+.||++|.|++++.|+ ++.|+++|.|+++|+|.+|+|++++.|++++.| .+++|+++++||+
T Consensus        10 ~I~g~v~IG~~~~I~~~~~i~g~~~IG~~v~Ig~~~~i~~~~Ig~~~~I~~~s~i-~~~~Ig~~~~IGP   77 (78)
T d1fxja1          10 DLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVV-EDANLAAACTIGP   77 (78)
T ss_dssp             EEEEEEEECSSCEECTTEEEEEEEEECTTCEECTTCEEESCEECTTCEECTTCEE-ESEEECTTCEESC
T ss_pred             EEeccEEECCCCEECCccEEeCCcEECCCCEECCCeEEecCEECCCCEEcCCcEE-ECCEECCCCEECc
Confidence            455566777777777777777 578899999999999999999999999999999 5789999988886

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.45  E-value=5e-13  Score=109.50  Aligned_cols=100  Identities=13%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEec---------cEECCC
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS---------SIIGWH  253 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~---------~~i~~~  253 (302)
                      .++.|++.++..++|++++.+++ ++|.-+++||.+|+|..+++|.. +.||++|+|+.++.|++         ++|+++
T Consensus       103 ~RvvPga~VR~GayI~~~vVlmp-s~VNigA~ig~~~midt~a~vgs~aqIG~~vhis~g~~igGvlep~~~~p~iIed~  181 (274)
T d3tdta_         103 FRVVPPATVRQGAFIARNTVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN  181 (274)
T ss_dssp             CEECTTCEEBTTCEECTTCEECS-EEECTTCEECTTCEECTTEEECTTCEECTTCEECTTCEECCSBTTBCSSCCEECTT
T ss_pred             EEeCCCceeccCcEECCCcEEee-eEeccccEEcCCcEEcccceecceeEECCCeEECCCcEEEeccccCCCCCcEEecC
Confidence            45677788888888888886664 68888899999999999999985 68999999999999963         679999


Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGV  284 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~  284 (302)
                      |.||++|.+..++.|+++++|++|+++.+.+
T Consensus       182 ~~IGa~s~v~egv~Vg~~avi~~gv~i~~~t  212 (274)
T d3tdta_         182 CFIGARSEVVEGVIVEEGSVISMGVYLGQST  212 (274)
T ss_dssp             CEECTTCEECTTCEECTTCEECTTCEECTTC
T ss_pred             cEeccCceEecCEEecCceEeccceEEeccc
Confidence            9999999999999999999999999988764

>d1j2za_ b.81.1.1 (A:) UDP N-acetylglucosamine acyltransferase {Helicobacter pylori [TaxId: 210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: UDP N-acetylglucosamine acyltransferase
domain: UDP N-acetylglucosamine acyltransferase
species: Helicobacter pylori [TaxId: 210]

Probab=99.44  E-value=5.1e-13  Score=112.19  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=17.2

Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      ++.||++++|+.++.|.++++||++++|+++++|
T Consensus       139 ~v~Ig~~v~IG~~s~I~~gv~IG~~a~IgagSvV  172 (259)
T d1j2za_         139 HIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSAL  172 (259)
T ss_dssp             TCEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred             cccccccceecceeeeecccEeccceeeeeeeee
Confidence            3444555555555555555555555555555543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.42  E-value=1.1e-12  Score=105.25  Aligned_cols=31  Identities=23%  Similarity=0.162  Sum_probs=15.0

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      |+++++||.++.|.+++.||+++.|++++++
T Consensus       145 Ig~~~~iG~~~~I~~gv~IG~~s~IgagsvV  175 (196)
T d1g97a1         145 IGNNVFVGSNSTIIAPVELGDNSLVGAGSTI  175 (196)
T ss_dssp             ECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred             EecCCEEeeeeEEcCCcEECCCCEECCCCEE
Confidence            4444444444444444555555555544444

>d1xhda_ b.81.1.5 (A:) Putative acetyltransferase/acyltransferase BC4754 {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Putative acetyltransferase/acyltransferase BC4754
species: Bacillus cereus [TaxId: 1396]

Probab=99.40  E-value=5.6e-13  Score=104.99  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=61.5

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEec-----cEECC-----------CCEE
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS-----SIIGW-----------HSTV  256 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~-----~~i~~-----------~~~i  256 (302)
                      .|++++.|+++++|.+++.||++|.|+++|+|.    +..|++++.+++++.+..     +++++           ++.|
T Consensus        14 ~Ig~~~~I~~~a~I~~~v~IG~~~~Ig~~~~I~~~~~~i~IG~~~~i~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~i   93 (172)
T d1xhda_          14 KIASSAFIADYVTITGDVYVGEESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHI   93 (172)
T ss_dssp             EECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEE
T ss_pred             EECCCcEECCCCEEeCCEEECCCcEecCCcccccccccccccceeeeeeeceeccCCcCCeeeeeeeeeeeeeccccccc
Confidence            344444444445554455555555555555553    245666666666665532     34444           4567


Q ss_pred             CCCcEEccCcEECCCcEECCceEEcCCeEecC-ccccc
Q 022113          257 GQWARVENMTILGEDVHVCDEIYSNGGVVLPH-KEIKS  293 (302)
Q Consensus       257 ~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~-~~~~~  293 (302)
                      +.+++|+.+++|.++++||++++|+++++|.+ +.++.
T Consensus        94 ~~~~~ig~~~~i~~gv~IG~~~~IgagsvV~~~~~i~~  131 (172)
T d1xhda_          94 KKDALIGMGSIILDGAEIGEGAFIGAGSLVSQGKKIPP  131 (172)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred             ccceEEecccEeeCCcEEcCcccccceEEEeeCeEECC
Confidence            78888888888889999999999998888764 55553

>d1qrea_ b.81.1.5 (A:) gamma-carbonic anhydrase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: gamma-carbonic anhydrase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=99.39  E-value=9.8e-13  Score=106.88  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN  281 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~  281 (302)
                      .++||++++||.++.|..++.||+++.||+++++.
T Consensus       103 ~~~IG~~v~IG~~~~i~g~~~IGd~~~IG~gs~i~  137 (210)
T d1qrea_         103 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVF  137 (210)
T ss_dssp             SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEE
T ss_pred             ceeeccccccccccccccCCcccCCcEeeCCcccc
Confidence            47788888888888887778888888888776554

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=6.1e-13  Score=105.40  Aligned_cols=89  Identities=17%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             ceEEcCCcEECCCCEECC--CcEECCCCEECCCcEEec-eEEccCCEECCCcEEec-cEECCCCEECCCcEEccCcEECC
Q 022113          195 NVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      ++.||+++.|+.+|+|..  .+.||++|.|+++|.|.. +++.+.+....++.+.. ++||++|+||.++.|.+++.||+
T Consensus        72 ni~IG~~~~I~~~~~I~d~~~I~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~iG~~~~I~~Gv~IG~  151 (182)
T d1ocxa_          72 NIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD  151 (182)
T ss_dssp             TEEECSSEEECSSEEEECSSCEEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred             ceeECCccEECCCcEEecCCeEEECCCeEECcCceEeecccccceeeeeccceEcceeEECceEeeCceeeccCcEEECC
Confidence            444555555555555532  336666666666666653 44555555555666644 67999999999999999999999


Q ss_pred             CcEECCceEEcCC
Q 022113          271 DVHVCDEIYSNGG  283 (302)
Q Consensus       271 ~~~v~~~~~v~~~  283 (302)
                      +|.||++++|..+
T Consensus       152 ~~vIgagsvV~kd  164 (182)
T d1ocxa_         152 NVVVASGAVVTKD  164 (182)
T ss_dssp             TCEECTTCEECSC
T ss_pred             CCEECCCCEEccC
Confidence            9999999987543

>d1g97a1 b.81.1.4 (A:252-447) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.38  E-value=2.3e-12  Score=103.27  Aligned_cols=94  Identities=21%  Similarity=0.278  Sum_probs=79.3

Q ss_pred             cccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEcc
Q 022113          186 LATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN  264 (302)
Q Consensus       186 ~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~  264 (302)
                      ++|.+ +|.+++.|+++++|+++|+|++++.||++|.|++++.|.++.|++++.|.. ..+....+++++.||+++.+..
T Consensus         4 i~P~s~~I~~~v~Ig~~~~I~~~vvI~~~v~IG~~~~I~~~~~i~~~~IG~~~~I~~-~~i~~~~~g~~~~Ig~~~~i~~   82 (196)
T d1g97a1           4 VNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITN-SMIEESSVADGVIVGPYAHIRP   82 (196)
T ss_dssp             SCGGGCEECTTCEECTTCEECTTCEEESSCEECTTCEECTTCEEESCEECTTCEECS-CEEESCEECTTCEECSSCEECS
T ss_pred             eCCCeEEECCCcEECCCCEECCCCEECCCcEECCCceEcCceEeeeeecccCccccc-cceeeccccCcceeecceeccc
Confidence            56644 688999999999999999999999999999999999999999999999975 5677788889999998888888


Q ss_pred             CcEECCCcEECCceEE
Q 022113          265 MTILGEDVHVCDEIYS  280 (302)
Q Consensus       265 ~~~i~~~~~v~~~~~v  280 (302)
                      ++.+++++.++..+.+
T Consensus        83 ~~~i~~~~~i~~~~~~   98 (196)
T d1g97a1          83 NSSLGAQVHIGNFVEV   98 (196)
T ss_dssp             SCEECTTCEEEEEEEE
T ss_pred             ccccccceeecccccc
Confidence            8888888777665544

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.37  E-value=1.7e-12  Score=97.99  Aligned_cols=87  Identities=21%  Similarity=0.343  Sum_probs=61.5

Q ss_pred             ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEcc-------------------CCEECCCcEEeccEECCCCE
Q 022113          195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHST  255 (302)
Q Consensus       195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~  255 (302)
                      +++|+++|.|. ++.| .+++||++|.|++++.|.++++++                   ++.|+++|+|++++|+++|.
T Consensus        14 ~s~Ig~g~~I~-~~~i-~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~   91 (135)
T d1yp2a1          14 DSVIGEGCVIK-NCKI-HHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNAR   91 (135)
T ss_dssp             EEEECTTCEEE-EEEE-ESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCE
T ss_pred             eCEECCCCEEe-CCEE-eccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCE
Confidence            45566666664 3333 366777777777777777666554                   47899999999999999999


Q ss_pred             ECCCcEEccCcEECCCcEECCceEEcCC
Q 022113          256 VGQWARVENMTILGEDVHVCDEIYSNGG  283 (302)
Q Consensus       256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~  283 (302)
                      ||+++.+.+++.+.+.+++..++++.++
T Consensus        92 IG~g~~i~~~~~~~~~~~~~~~~~i~~g  119 (135)
T d1yp2a1          92 IGDNVKIINKDNVQEAARETDGYFIKSG  119 (135)
T ss_dssp             ECTTCEECCSSCCSCEEEGGGTEEEETT
T ss_pred             ECCCcEECCCcccccceeeCCCEEECCC
Confidence            9999999877666665555555444444

>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CTP:phosphocholine cytidylytransferase LicC
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.32  E-value=5.9e-12  Score=103.18  Aligned_cols=156  Identities=12%  Similarity=0.201  Sum_probs=109.1

Q ss_pred             HHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113            4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus         4 ~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      .++++.+.+++++.|..|.+++||+++++.|++.++    ++|++.++|.+++..+.+.+       .....+.....++
T Consensus        62 ~i~~~~~~~~i~i~~~~~~~~~Gt~~sl~~a~~~l~----~~~ii~~dd~~~~~~~~~~~-------~~~~~~~~~~~~~  130 (229)
T d1jyka_          62 QFDYLKEKYGVRLVFNDKYADYNNFYSLYLVKEELA----NSYVIDADNYLFKNMFRNDL-------TRSTYFSVYREDC  130 (229)
T ss_dssp             GGTHHHHHHCCEEEECTTTTTSCTHHHHHTTGGGCT----TEEEEETTEEESSCCCCSCC-------CSEEEEECEESSC
T ss_pred             hhhhhhhhccccccccccccccccccccccchhhhc----ccccccccccccccchhhhh-------hccccceeeeeec
Confidence            445566778999999999999999999999999884    46777666666655444221       2233444444667


Q ss_pred             CCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhc----cC---CC---CCccccchHHHHhcCcEEEEE
Q 022113           84 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI----EL---RP---TSIEKEVFPKIALEGKLFAMV  153 (302)
Q Consensus        84 ~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l----~~---~~---~~~~~~~~~~l~~~~~v~~~~  153 (302)
                      ..++.+..++ ++++..+.++|.   ..+..+|+|+|++..++.+    +.   ..   ..+..+.+.....+.+++.+.
T Consensus       131 ~~~~~~~~~~-~~~i~~~~~~~~---~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (229)
T d1jyka_         131 TNEWFLVYGD-DYKVQDIIVDSK---AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYWDNMVKDNIKELDVYVEE  206 (229)
T ss_dssp             SSCCEEEECT-TCBEEEEECCCS---SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTTCCTTHHHHTTGGGCCEEEEE
T ss_pred             cccceeEEcc-CCceeeEEEecc---cceEEEEEEEEcHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHhCCceEEE
Confidence            7888888886 789999999884   3567789999998765433    11   11   111122334455667888887


Q ss_pred             ecC-eeEecCChHHHHHHHHHH
Q 022113          154 LPG-FWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       154 ~~g-~~~digt~~~~~~a~~~~  174 (302)
                      .++ .|.+++||++|.++...+
T Consensus       207 ~~~~~~~~I~t~edl~~a~~~~  228 (229)
T d1jyka_         207 LEGNSIYEIDSVQDYRKLEEIL  228 (229)
T ss_dssp             CCTTSEEECCSHHHHHHHHHHH
T ss_pred             ecCCCEEecCCHHHHHHHHHhh
Confidence            776 599999999999887654

>d1v3wa_ b.81.1.5 (A:) Ferripyochelin binding protein {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: gamma-carbonic anhydrase-like
domain: Ferripyochelin binding protein
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=5.6e-12  Score=99.24  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=67.0

Q ss_pred             EEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEe----------------ccEECCCCEE
Q 022113          197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS----------------SSIIGWHSTV  256 (302)
Q Consensus       197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~----------------~~~i~~~~~i  256 (302)
                      .|++++.|+++|+|.++++||++|.|++++.|.    +..+++++.+.+.+.+.                ...+...+.|
T Consensus        12 ~I~~~~~I~~~a~I~g~v~IG~~~~Ig~~~~I~~~~~~v~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I   91 (173)
T d1v3wa_          12 RIHPSAFVDENAVVIGDVVLEEKTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKV   91 (173)
T ss_dssp             EECTTCEECTTSEEEEEEEECTTCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEE
T ss_pred             EECcCcEECCCCEEeCceEECCCCEECCCccccccccccccccccccccccccccccCCCcccCcceeeeeeeeeeeeec
Confidence            344444555555555555555555555555553    34567777777666652                3344556899


Q ss_pred             CCCcEEccCcEECCCcEECCceEEcCCeEecC-ccccc
Q 022113          257 GQWARVENMTILGEDVHVCDEIYSNGGVVLPH-KEIKS  293 (302)
Q Consensus       257 ~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~-~~~~~  293 (302)
                      |++++|+.+++|.++++||++++++++++|+. +.++.
T Consensus        92 g~~~~ig~~~~i~~gv~Ig~~~vIgagsvV~~~~~i~~  129 (173)
T d1v3wa_          92 GNYVIIGISSVILDGAKIGDHVIIGAGAVVPPNKEIPD  129 (173)
T ss_dssp             CSSEEECTTCEECTTCEECSSEEECTTCEECTTCEECT
T ss_pred             CCcccccceeeecCCEEEcceeEEcCCcEEeCCeEeCC
Confidence            99999999999999999999999999998876 45553

>d1yp2a1 b.81.1.4 (A:317-451) Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: Glucose-1-phosphate adenylyltransferase small subunit, C-terminal domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.29  E-value=3.5e-12  Score=96.21  Aligned_cols=95  Identities=14%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             cccccCceEec----ceEEcCCcEECCCCEECCCcEE------------------CCCCEECCCcEEeceEEccCCEECC
Q 022113          184 LKLATGANIVG----NVLVHESAQIGEGCLIGPDVAV------------------GPGCVVESGVRLSRCTVMRGVRIKK  241 (302)
Q Consensus       184 ~~~~~~~~i~~----~~~i~~~~~i~~~~~i~~~~~i------------------g~~~~i~~~~~i~~~~i~~~~~i~~  241 (302)
                      +.+.+++.|+.    +++++++++|++++.|.+.+.+                  ++++.||++|.|.+++|+++|.||+
T Consensus        15 s~Ig~g~~I~~~~i~~s~IG~~~~Ig~~~~I~~~~i~~~~~~~~~~~~~~~~~~i~~~v~Ig~~~~I~~~iIg~~~~IG~   94 (135)
T d1yp2a1          15 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGD   94 (135)
T ss_dssp             EEECTTCEEEEEEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEECT
T ss_pred             CEECCCCEEeCCEEeccccCCcEEECCCCEEEcCEEECCCEEeCCcEEEecceEcCCCCEECcceEeccceecCCCEECC
Confidence            34555555542    4456666666666666554433                  3446788888888888888888888


Q ss_pred             CcEEec-cEECCCCEECCCcEEccC-cEECCCcEECCce
Q 022113          242 HACISS-SIIGWHSTVGQWARVENM-TILGEDVHVCDEI  278 (302)
Q Consensus       242 ~~~i~~-~~i~~~~~i~~~~~i~~~-~~i~~~~~v~~~~  278 (302)
                      ++.+.+ +.+.+.+.++.++.+..+ ++|++++.|++|+
T Consensus        95 g~~i~~~~~~~~~~~~~~~~~i~~g~vvIg~~~~I~~g~  133 (135)
T d1yp2a1          95 NVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGI  133 (135)
T ss_dssp             TCEECCSSCCSCEEEGGGTEEEETTEEEECTTCEECTTC
T ss_pred             CcEECCCcccccceeeCCCEEECCCeEEECCCCEECcCc
Confidence            777744 444455555555555444 3344444444443

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.28  E-value=6.5e-11  Score=97.76  Aligned_cols=167  Identities=19%  Similarity=0.259  Sum_probs=125.0

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      .+..+.+..+..+.||++++..++..+....++.+++.++|.++ +.+++++++.|.+.....+++..+...+..||.+.
T Consensus        62 ~~~~~~~~~~~~~~g~~~~~~~a~~~l~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (250)
T d1g97a2          62 LAGQTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIV  141 (250)
T ss_dssp             TTTTSEEEECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEE
T ss_pred             ccccccccccccccccchHHHHHHHhhhcccCcceEEecCCCccCHHHHHHHHHHHhhhccccccccceecccCCCceEE
Confidence            44556778888899999999999998865433444555555554 56699999999999999999999988888999988


Q ss_pred             EeCCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHh-hccC------CCCCccccchHHHHhc-CcEEEEEecCee
Q 022113           91 MEESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLD-RIEL------RPTSIEKEVFPKIALE-GKLFAMVLPGFW  158 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~-~l~~------~~~~~~~~~~~~l~~~-~~v~~~~~~g~~  158 (302)
                      .+. +..+..+.+++...    ..++.++|+|+|++..+. .+..      .......+++..+++. .++.++..+++|
T Consensus       142 ~~~-~~~v~~~~~~~~~~~~~~~~~~~~~g~y~f~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~~~~~~  220 (250)
T d1g97a2         142 RND-NAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFD  220 (250)
T ss_dssp             ECT-TCCEEEEECGGGCCHHHHTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCGGGHHHHHHHTTCCEEEEECSSGG
T ss_pred             Eee-ceEEEEeeccccccccccccceeeeeeeecchHHHHHHHHHhccCcchhhHHHhHHHHHHHHCCCeEEEEEcCCcc
Confidence            875 78899998887543    357899999999986653 3321      1112234455566665 589999999999


Q ss_pred             Ee--cCChHHHHHHHHHHHHhhc
Q 022113          159 MD--IGQPRDYITGLRLYLDSLR  179 (302)
Q Consensus       159 ~d--igt~~~~~~a~~~~l~~~~  179 (302)
                      .+  ++|++++..|++.+.++++
T Consensus       221 ~~~gInt~~dL~~ae~~~~~~~~  243 (250)
T d1g97a2         221 ESLGVNDRVALATAESVMRRRIN  243 (250)
T ss_dssp             GGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             eecCCCCHHHHHHHHHHHHHHHH
Confidence            66  6799999999887766544

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=99.28  E-value=7.6e-13  Score=107.00  Aligned_cols=48  Identities=21%  Similarity=0.219  Sum_probs=38.9

Q ss_pred             ccEECCCCEECCCcEEccCcEECCCcEECCceEE----cCCeE---ecCcccccc
Q 022113          247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS----NGGVV---LPHKEIKSS  294 (302)
Q Consensus       247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v----~~~~v---~~~~~~~~~  294 (302)
                      .++||++|+||.++.|.+++.||++|.|+++++|    +++++   .|+|.++.+
T Consensus       113 ~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~kdv~~~~i~~G~PAk~ik~r  167 (203)
T d1mr7a_         113 DTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQR  167 (203)
T ss_dssp             CEEECSSCEECTTCEECTTCEECTTCEECTTCEECSCBCTTEEEEETTEEEEEES
T ss_pred             CeEECCEEEECCceeEEeEEEEcCCCEEecCeEEeeeCCCCEEEEEeCCEEEecc
Confidence            4789999999999999999999999999999886    44444   577777755

>d3tdta_ b.81.1.2 (A:) Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD {Mycobacterium bovis [TaxId: 1765]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
domain: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
species: Mycobacterium bovis [TaxId: 1765]

Probab=99.20  E-value=1.2e-10  Score=95.32  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=17.1

Q ss_pred             eEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113          196 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL  228 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i  228 (302)
                      ++|.-++.||++|.|..+++||..|.||++|.|
T Consensus       126 s~VNigA~ig~~~midt~a~vgs~aqIG~~vhi  158 (274)
T d3tdta_         126 SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL  158 (274)
T ss_dssp             EEECTTCEECTTCEECTTEEECTTCEECTTCEE
T ss_pred             eEeccccEEcCCcEEcccceecceeEECCCeEE
Confidence            344445555555555555555555555555544

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.1e-10  Score=93.86  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=17.1

Q ss_pred             EECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113          249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS  280 (302)
Q Consensus       249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v  280 (302)
                      +|+++++||.++.|.+++.||+++.|++++++
T Consensus       145 ~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV  176 (201)
T d2oi6a1         145 IIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV  176 (201)
T ss_dssp             EECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred             EeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence            45555555555555555555555555555554

>d1ocxa_ b.81.1.3 (A:) Maltose O-acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Maltose O-acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.5e-11  Score=97.18  Aligned_cols=93  Identities=15%  Similarity=0.231  Sum_probs=57.9

Q ss_pred             ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe-------------ccEECCCCEE
Q 022113          190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------SSIIGWHSTV  256 (302)
Q Consensus       190 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-------------~~~i~~~~~i  256 (302)
                      ..|.+++++.    +|.++.||++++|+.+|+|.+++.|   .||++|.|++++.|.             .+.++..+.|
T Consensus        59 ~~i~~p~~~~----~G~ni~IG~~~~I~~~~~I~d~~~I---~IG~~~~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v~I  131 (182)
T d1ocxa_          59 AYIEPTFRCD----YGYNIFLGNNFFANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTI  131 (182)
T ss_dssp             EEECSCEEES----SSTTEEECSSEEECSSEEEECSSCE---EECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEE
T ss_pred             eEEECCEEEE----eccceeECCccEECCCcEEecCCeE---EECCCeEECcCceEeecccccceeeeeccceEcceeEE
Confidence            3455554432    2344444444444444444333322   344444555544442             2457777889


Q ss_pred             CCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          257 GQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       257 ~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      |++++|+.+++|.++++||++++|+++++|...
T Consensus       132 g~~~~iG~~~~I~~Gv~IG~~~vIgagsvV~kd  164 (182)
T d1ocxa_         132 GNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD  164 (182)
T ss_dssp             CTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CceEeeCceeeccCcEEECCCCEECCCCEEccC
Confidence            999999999999999999999999999988543

>d1krra_ b.81.1.3 (A:) Galactoside acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Galactoside acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.9e-10  Score=92.05  Aligned_cols=93  Identities=14%  Similarity=0.262  Sum_probs=68.4

Q ss_pred             eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe---ceEEccCCEECCCcEEec-------------cEECCCC
Q 022113          191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-------------SIIGWHS  254 (302)
Q Consensus       191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------~~i~~~~  254 (302)
                      .++++++|+|++.+.    .|.++.||++|.|+.+|.|.   ...||++|.|+++++|..             ..++..+
T Consensus        56 ~iG~~~~I~p~~~i~----~G~nv~IG~~~~I~~~~~I~~~~~i~IG~~v~Ig~~v~I~~~~~~~~~~~~~~~~~~~~~v  131 (200)
T d1krra_          56 TVGENAWVEPPVYFS----YGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPI  131 (200)
T ss_dssp             BCCSSCEECSCEEES----CSTTEEECSSCEECSCEEEECSSCEEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCE
T ss_pred             cCCCCCEEcCCEEEe----cCCccEECCccEECceEEEecCCCcEeCCCccccceeEEecccccceecccccceeecceE
Confidence            455555555555541    13455666666666666663   467999999999998854             2455668


Q ss_pred             EECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113          255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLP  287 (302)
Q Consensus       255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~  287 (302)
                      .||++++|+.+++|.++++||++++|+++++|.
T Consensus       132 ~Igd~v~IG~~~~I~~Gv~IG~~~vIgagSvV~  164 (200)
T d1krra_         132 TIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVT  164 (200)
T ss_dssp             EECTTCEECTTCEECTTCEECTTCEECTTCEEC
T ss_pred             EEccCcccceeeecccccccCCCcEEeCCCEEe
Confidence            999999999999999999999999999999874

>d2oi6a1 b.81.1.4 (A:252-452) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: GlmU C-terminal domain-like
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.7e-10  Score=91.37  Aligned_cols=33  Identities=21%  Similarity=0.130  Sum_probs=22.3

Q ss_pred             CEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113          254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVL  286 (302)
Q Consensus       254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~  286 (302)
                      +.|+++++|+.++.|.++++||+++++++++++
T Consensus       144 ~~Ig~~v~iG~~~~I~~~v~IG~~s~IgagsvV  176 (201)
T d2oi6a1         144 TIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTV  176 (201)
T ss_dssp             EEECTTCEECTTCEEESSEEECTTCEECTTCEE
T ss_pred             cEeCCcEEEeEeeeEcCCcEECCCCEECCCCEE
Confidence            355666666666777777777777777777765

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=3.8e-10  Score=92.90  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=50.3

Q ss_pred             eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECCCcE---EeccEECCCCEECCCcEEccCcEECC
Q 022113          196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGE  270 (302)
Q Consensus       196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~i~~  270 (302)
                      +-|+++++||+++.|..  +.+||+.+.||+++.|     ..+++++....   -+..+||++|+||++++|.+++.||+
T Consensus       138 ~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i-----~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~  212 (241)
T d1ssqa_         138 VDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSI-----LQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGK  212 (241)
T ss_dssp             CEECTTCEECSSCEESSCTTCEECTTCEECTTCEE-----CTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECT
T ss_pred             eccccCCEEccCcccCccceEEEeccceecCCeee-----cccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECC
Confidence            33444444444444432  4445555555444433     22233322111   13477999999999999999999999


Q ss_pred             CcEECCceEEcCC
Q 022113          271 DVHVCDEIYSNGG  283 (302)
Q Consensus       271 ~~~v~~~~~v~~~  283 (302)
                      +++||+|++|..+
T Consensus       213 ~a~IgAgsvV~kd  225 (241)
T d1ssqa_         213 YAKIGANSVVLNP  225 (241)
T ss_dssp             TCEECTTCEECSC
T ss_pred             CCEECCCCEECCC
Confidence            9999999886543

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=3.2e-10  Score=91.42  Aligned_cols=82  Identities=13%  Similarity=0.161  Sum_probs=58.3

Q ss_pred             CcEECCCCEECCCcEEe----ceEEccCCEECCC----------------cEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113          213 DVAVGPGCVVESGVRLS----RCTVMRGVRIKKH----------------ACISSSIIGWHSTVGQWARVENMTILGEDV  272 (302)
Q Consensus       213 ~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~----------------~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~  272 (302)
                      .++||++|.|+++|+|.    .+.+++++.+.+.                ...++++||++|+||.+|.|.+++.||++|
T Consensus        54 ~v~IG~~~~I~~g~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~Igd~v~IG~~s~I~~gv~IG~~~  133 (208)
T d1xata_          54 KLVIGSFCSIGSGAAFIMAGNQGHRAEWASTFPFHFMHEEPAFAGAVNGYQPAGDTLIGHEVWIGTEAMFMPGVRVGHGA  133 (208)
T ss_dssp             CEEECSSCEECTTCEEECSTTTTCCTTSSCCSCGGGCCSCGGGGGCCCCCCCCCCEEECTTCEECTTCEECTTCEECTTC
T ss_pred             eeEECCCCEECCCCEEeccCCCcccccceeecccccccccccccccccCccccCCEEEcCCeEECccccccCCeEeCCCC
Confidence            46777777777777763    2333333333221                123458899999999999999999999999


Q ss_pred             EECCceEEc----CCeE---ecCcccccc
Q 022113          273 HVCDEIYSN----GGVV---LPHKEIKSS  294 (302)
Q Consensus       273 ~v~~~~~v~----~~~v---~~~~~~~~~  294 (302)
                      .|+++++|.    ++++   .|+|.++.+
T Consensus       134 vIgagSvVtkdvp~~si~~G~PAk~ik~R  162 (208)
T d1xata_         134 IIGSRALVTGDVEPYAIVGGNPARTIRKR  162 (208)
T ss_dssp             EECTTCEECSCBCTTEEEETTTTEEEEES
T ss_pred             EEeCceEEeecCCcCcEEEecCCEEEecc
Confidence            999999975    4444   578887765

>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Serine acetyltransferase
domain: Serine acetyltransferase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=2.4e-08  Score=81.84  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=45.6

Q ss_pred             cCceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCE
Q 022113          188 TGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHST  255 (302)
Q Consensus       188 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~  255 (302)
                      -++.|++.+.|++++.|..  +++|++.+.||++|.|..++.+.         ...|+++|.||.|+.| ++..||+++.
T Consensus       136 ~g~~I~~~~~Ig~g~~i~h~~givig~~~~ig~~~~i~~~v~~~~~~~~~~~~~~~Ig~~v~IGaga~Ilg~v~IG~~a~  215 (241)
T d1ssqa_         136 FDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAK  215 (241)
T ss_dssp             HSCEECTTCEECSSCEESSCTTCEECTTCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECTTCE
T ss_pred             eeeccccCCEEccCcccCccceEEEeccceecCCeeecccccccccccCCCCCCCccCCCeEECCCCEEcCCcEECCCCE
Confidence            3456666666666666643  66777777777777777777774         2456666666666544 3344444444


Q ss_pred             ECCCcEE
Q 022113          256 VGQWARV  262 (302)
Q Consensus       256 i~~~~~i  262 (302)
                      ||+++.+
T Consensus       216 IgAgsvV  222 (241)
T d1ssqa_         216 IGANSVV  222 (241)
T ss_dssp             ECTTCEE
T ss_pred             ECCCCEE
Confidence            4444443

>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus faecium, VAT(D) [TaxId: 1352]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Enterococcus faecium, VAT(D) [TaxId: 1352]

Probab=98.75  E-value=1e-09  Score=88.12  Aligned_cols=39  Identities=13%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113          250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH  288 (302)
Q Consensus       250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~  288 (302)
                      +...+.||++|+|+.+++|.++++||++++++++++|..
T Consensus       110 i~g~v~IGd~v~IG~~~~I~~gv~IG~~~~IgagSvV~k  148 (203)
T d1mr7a_         110 IKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK  148 (203)
T ss_dssp             CCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred             CccCeEECCEEEECCceeEEeEEEEcCCCEEecCeEEee
Confidence            445688999999999999999999999999999998754

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.72  E-value=5.9e-08  Score=83.20  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113          189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV  262 (302)
Q Consensus       189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i  262 (302)
                      ++.|.+++.|+.+++|+++|.|++++.|+++++|+ ++.|. ++.|+++|.|+++++++++.+..++.|..++.+
T Consensus        63 nA~V~~~a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~~~~~i~~~~i~g~~~v~~~a~i  136 (320)
T d2f9ca1          63 NAMAFAGTEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQSSSVREECAIYGDARVLNQSEI  136 (320)
T ss_dssp             TCEECSSCEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEESCEECSSEEECSSCEEESSCEE
T ss_pred             CcEECCCCEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeecCccEEeeeEEECCeEEeCCcEE
Confidence            34444444444444444444444444444444443 33333 344455555544444444444444444444433

>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3.7e-07  Score=74.52  Aligned_cols=163  Identities=20%  Similarity=0.224  Sum_probs=108.1

Q ss_pred             CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHH-HHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF-HKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      .+....+..+..++||+++++++.+++..  +.++++..+|..+... ..+... +........++..+..++..++.+.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~~~~~~~~i~~--~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (248)
T d2oi6a2          64 KDDNLNWVLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISV-ETLQRLRDAKPQGGIGLLTVKLDDPTGYGRIT  140 (248)
T ss_dssp             CCTTEEEEECSSCCCHHHHHHHHGGGSCT--TSEEEEEETTCTTCCH-HHHHHHHHHCCTTSEEEEEEECSCCTTSCEEE
T ss_pred             ccccccccccccCcccHHHHHhhhhhhcc--ccceeeecCccccccc-hhHHHHHHHhhccccceeEEEecCCccccccc
Confidence            46667888888999999999999999865  3677778888765332 111122 2234445566777777888888887


Q ss_pred             EeCCCCcEEEEEecCC----CCCCCeEEEEEEEeCHhhH-hhccCC-CCC-----ccccchHHHHhc-CcEEEEEecCee
Q 022113           91 MEESTGKVEKFVEKPK----LFVGNKINAGIYLLNPAVL-DRIELR-PTS-----IEKEVFPKIALE-GKLFAMVLPGFW  158 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~----~~~~~~~~~Giy~~~~~~l-~~l~~~-~~~-----~~~~~~~~l~~~-~~v~~~~~~g~~  158 (302)
                      .+  ++....+.+++.    .....+..++.|.|+.+.+ +.+... ...     ...+.+..+++. .++..+...++|
T Consensus       141 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~ltd~~~~~~~~g~~v~~v~~~~~~  218 (248)
T d2oi6a2         141 RE--NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLS  218 (248)
T ss_dssp             EE--TTEEEEEECGGGCCTTGGGCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCSSGG
T ss_pred             cc--cCccceeeeccCCChhhhhhhhhhhhhhccchHHHHHHHHHhhccccchhhhhhHHHHHHHHCCCeEEEEEcCCHH
Confidence            76  466666554432    2234578899999997766 434321 111     123455666665 477777777777


Q ss_pred             E--ecCChHHHHHHHHHHHHhhc
Q 022113          159 M--DIGQPRDYITGLRLYLDSLR  179 (302)
Q Consensus       159 ~--digt~~~~~~a~~~~l~~~~  179 (302)
                      .  .|+||+++..|++.++.+..
T Consensus       219 e~~gI~t~eDL~~ae~i~~~~~~  241 (248)
T d2oi6a2         219 EVEGVNNRLQLSRLERVYQSEQA  241 (248)
T ss_dssp             GGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHH
Confidence            3  48899999999887765443

>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: YdcK-like
domain: Hypothetical protein YdcK
species: Salmonella enterica [TaxId: 28901]

Probab=98.64  E-value=1.9e-07  Score=79.92  Aligned_cols=45  Identities=16%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe
Q 022113          184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS  229 (302)
Q Consensus       184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~  229 (302)
                      +.+.+++.|.+++.|+++++|+++++|+ ++.|.+++.|++++.|.
T Consensus        70 a~I~~na~i~~~~~I~~~a~Ig~n~~ig-~a~I~~~a~I~~n~~i~  114 (320)
T d2f9ca1          70 TEITGNARITQPCTLYNNVRIGDNVWID-RADISDGARISDNVTIQ  114 (320)
T ss_dssp             CEECTTCEECSSCEECSSCEECSSCEES-SCEECSSEEECSSCEEE
T ss_pred             CEECCCCEECCCcEECCCcEECCcEEEC-CcEEEcCcEEeeeeeec
Confidence            4444444444444444555555444442 34444444444444444

>d1xata_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: Galactoside acetyltransferase-like
domain: Xenobiotic acetyltransferase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.59  E-value=6.7e-08  Score=77.47  Aligned_cols=37  Identities=8%  Similarity=0.111  Sum_probs=29.9

Q ss_pred             CCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113          253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK  289 (302)
Q Consensus       253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~  289 (302)
                      .+.||++|+|+.++.|.++++||++++|+++++|...
T Consensus       108 ~v~Igd~v~IG~~s~I~~gv~IG~~~vIgagSvVtkd  144 (208)
T d1xata_         108 DTLIGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGD  144 (208)
T ss_dssp             CEEECTTCEECTTCEECTTCEECTTCEECTTCEECSC
T ss_pred             CEEEcCCeEECccccccCCeEeCCCCEEeCceEEeec
Confidence            4788888888888888888888888888888876543

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=97.46  E-value=0.0053  Score=48.86  Aligned_cols=169  Identities=13%  Similarity=0.090  Sum_probs=102.2

Q ss_pred             HHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCc-CHHHHHHHHHHcCCcEEEEEEeCCC-
Q 022113            6 KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEY-PFAEMIEFHKAHGGEASIMVTKVDE-   82 (302)
Q Consensus         6 ~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~-~l~~~~~~~~~~~~~~~l~~~~~~~-   82 (302)
                      .++...+|.++.+..... ..+.+.+..+...+..   +.++++.||.. .+. .+..+++.+................ 
T Consensus        56 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  131 (245)
T d1h7ea_          56 EQAVQAFGGKAIMTRNDH-ESGTDRLVEVMHKVEA---DIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISA  131 (245)
T ss_dssp             HHHHHHTTCEEEECCSCC-SSHHHHHHHHHHHSCC---SEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECH
T ss_pred             hhhhhhcCceEEEecCcc-ccccHHHHHHHHhcCC---CEEEEecchhhhcccccchhhhhccccccccccccccccccc
Confidence            334566788876554433 3455666777777754   56777899984 343 4777888887665544433333211 


Q ss_pred             ---CC-CcceEEEeCCCCcEEEEEecCCCC------CCCeEEEEEEEeCHhhHhhccCCCCCcc-----ccchHHHHhcC
Q 022113           83 ---PS-KYGVVVMEESTGKVEKFVEKPKLF------VGNKINAGIYLLNPAVLDRIELRPTSIE-----KEVFPKIALEG  147 (302)
Q Consensus        83 ---~~-~~g~v~~d~~~~~v~~~~ekp~~~------~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----~~~~~~l~~~~  147 (302)
                         .. ....+.... .+....+...+...      .......|+|.|+++.|..+.....+..     -|.+..+-.+.
T Consensus       132 ~~~~~~~~vk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~lr~l~ng~  210 (245)
T d1h7ea_         132 AEAAEPSTVKVVVNT-RQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQLRLMNAGI  210 (245)
T ss_dssp             HHHTCTTSCEEEECT-TCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTTHHHHHTTC
T ss_pred             ccccCCcceeeccch-hhhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHHHHHHHCCC
Confidence               11 112233332 45666666554322      2346788999999998876532221110     02233344557


Q ss_pred             cEEEEEecCeeEecCChHHHHHHHHHHHHhhc
Q 022113          148 KLFAMVLPGFWMDIGQPRDYITGLRLYLDSLR  179 (302)
Q Consensus       148 ~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~  179 (302)
                      ++.++..+..+.+|+|++||..|...+.+++.
T Consensus       211 ~I~~~~~~~~~~~IDt~~Dl~~a~~il~~~~~  242 (245)
T d1h7ea_         211 NIRTFEVAATGPGVDTPACLEKVRALMAQELA  242 (245)
T ss_dssp             CEEEEECCCCCCCSSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCCCCHHHHHHHHHHHHhhhh
Confidence            88888888888999999999999877665543

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.24  E-value=0.011  Score=47.27  Aligned_cols=167  Identities=10%  Similarity=0.079  Sum_probs=105.5

Q ss_pred             HHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113            6 KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus         6 ~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      ..+.+..|.++.+..+....||..+...+......+ .+.++.+.||. +.+ .++..+++.+.......+.......++
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iv~~~~d~p~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~  132 (255)
T d1vica_          54 ADVAKSFGAEVCMTSVNHNSGTERLAEVVEKLAIPD-NEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDA  132 (255)
T ss_dssp             HHHHHHTTCEEEECCCSSCCHHHHHHHHHHHTTCCT-TCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCH
T ss_pred             chhhhhhccccceeeeccCCcchhhHHHHHHhhccC-CceEEEEecchhhhhhhhhhhhhhhcccccccccceeeeccch
Confidence            344667899999988888888887777666655432 24566689998 344 447888888888777777666654321


Q ss_pred             -----CCcceEEEeCCCCcEEEEEecCCC-----------------CCCCeEEEEEEEeCHhhHhhccCCCCCcc-----
Q 022113           84 -----SKYGVVVMEESTGKVEKFVEKPKL-----------------FVGNKINAGIYLLNPAVLDRIELRPTSIE-----  136 (302)
Q Consensus        84 -----~~~g~v~~d~~~~~v~~~~ekp~~-----------------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----  136 (302)
                           ........++ .+++..+...+..                 ........|+|+|++..+..+.....+..     
T Consensus       133 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~le~~e~  211 (255)
T d1vica_         133 EELFNPNAVKVLTDK-DGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQWAPTQLENLEK  211 (255)
T ss_dssp             HHHTCTTSCEEEECT-TSBEEEEESSCSSCCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHT
T ss_pred             hhccCccceeeeecc-CCcccccccccccccchhhhhccchhhcccccchheeeeeecccHHHHhhhhccCCChhHHHHh
Confidence                 1222334454 6778777765422                 12345678999999998865422111110     


Q ss_pred             ccchHHHHhcCcEEEEEecC-eeEecCChHHHHHHHHHH
Q 022113          137 KEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       137 ~~~~~~l~~~~~v~~~~~~g-~~~digt~~~~~~a~~~~  174 (302)
                      -+.+..+..+.++..+.... .+.||+|++|+..|...+
T Consensus       212 le~lr~l~ng~~I~~~~~~~~~~idIDt~eDl~~ae~il  250 (255)
T d1vica_         212 LEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAIL  250 (255)
T ss_dssp             CTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCceeEEEeCCCCCcCCCCHHHHHHHHHHH
Confidence            01122333456777766654 578999999999887654

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=97.15  E-value=0.0049  Score=49.19  Aligned_cols=165  Identities=11%  Similarity=0.017  Sum_probs=100.4

Q ss_pred             HHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeec-C-cCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113            6 KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-E-YPFAEMIEFHKAHGGEASIMVTKVDEP   83 (302)
Q Consensus         6 ~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~-~-~~l~~~~~~~~~~~~~~~l~~~~~~~~   83 (302)
                      .++.++.|.++.+..+....||......+...... ..+.++.+.||..+ + .++..+++.+.....+....+.+....
T Consensus        54 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~  132 (246)
T d1vh1a_          54 ARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFS-DDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNA  132 (246)
T ss_dssp             HHHHHHTTCEEEECC-----CHHHHHHHHHHTTCC-TTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCH
T ss_pred             cchhhcccccceeecccccccchHHHHHHHhhccc-ccceeeeeccccccchhhHHHHHhhhhcccccccccccccccch
Confidence            34466788898888877777776665555544332 23567778999943 3 457888888888887777776665433


Q ss_pred             CCc-----ceEEEeCCCCcEEEEEecCCC-------------CCCCeEEEEEEEeCHhhHhhccCCCCCcc-----ccch
Q 022113           84 SKY-----GVVVMEESTGKVEKFVEKPKL-------------FVGNKINAGIYLLNPAVLDRIELRPTSIE-----KEVF  140 (302)
Q Consensus        84 ~~~-----g~v~~d~~~~~v~~~~ekp~~-------------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~-----~~~~  140 (302)
                      ..+     .-+..++ ++++..|...+..             ....+...|+|+|++..|........+..     -|.+
T Consensus       133 ~~~~~~~~vk~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~l  211 (246)
T d1vh1a_         133 EEAFNPNAVKVVLDA-EGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQL  211 (246)
T ss_dssp             HHHTCTTSCEEEECT-TSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTTH
T ss_pred             hcccCCCcceeeecc-cCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHHH
Confidence            221     2244454 6888887665321             12346688999999998865432111110     1223


Q ss_pred             HHHHhcCcEEEEEecC-eeEecCChHHHHHHHH
Q 022113          141 PKIALEGKLFAMVLPG-FWMDIGQPRDYITGLR  172 (302)
Q Consensus       141 ~~l~~~~~v~~~~~~g-~~~digt~~~~~~a~~  172 (302)
                      +.+-.+.++..+.... ...||+|++|+..|..
T Consensus       212 R~i~~g~~i~~~~~~~~~~~~IDt~~Dl~~a~k  244 (246)
T d1vh1a_         212 RVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRA  244 (246)
T ss_dssp             HHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHH
T ss_pred             HHHHCCCceEEEEecCCCCCCCCCHHHHHHHHh
Confidence            3344456787776665 4679999999987754

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.23  E-value=0.14  Score=39.36  Aligned_cols=153  Identities=10%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             HHHHhhcCCcEEEEEecCCCC---CChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEe
Q 022113            5 LKEFEAKLGIKIICSQETEPL---GTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTK   79 (302)
Q Consensus         5 ~~~~~~~~g~~i~~~~~~~~~---Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~   79 (302)
                      +.++.+.+|.++.+.......   ++...++.+.+.+... .+.++.+.||. +.+ .++.++++.+.+...+..+.+.+
T Consensus        57 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~  135 (225)
T d1eyra_          57 IAEEAKNFGVEVVLRPAELASDTASSISGVIHALETIGSN-SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACP  135 (225)
T ss_dssp             HHHHHHHTTCEEEECCHHHHSTTCCHHHHHHHHHHHHTCC-SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEE
T ss_pred             hhhhhhhhcceeeeeccccccccccchhhccccccccccc-cceEEEeeccccccccccccccceeeccccccccceeec
Confidence            345566678777554443222   3345566666665442 25667789999 444 44888888887777676666665


Q ss_pred             CCCCCCcceEEEeCCCCcEEEEEecCCC-------CCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEE
Q 022113           80 VDEPSKYGVVVMEESTGKVEKFVEKPKL-------FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAM  152 (302)
Q Consensus        80 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~-------~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~  152 (302)
                      ..+...+.....+  ++....+......       ......+.++|+++++.|..-.    .+         -..++..+
T Consensus       136 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~~g~iy~~~~~~l~~~~----~~---------~~~~~~~~  200 (225)
T d1eyra_         136 MEHHPLKTLLQIN--NGEYAPMRHLSDLEQPRQQLPQAFRPNGAIYINDTASLIANN----CF---------FIAPTKLY  200 (225)
T ss_dssp             CSSCTTSCEEECS--SSCEEESSCGGGGTSCGGGSCCEEEEEEEEEEEEHHHHHHHT----SS---------CCSSCEEE
T ss_pred             ccccccccccccc--cccccccccccccccccccCcceeeecceeEEeeHHHHHHcC----Cc---------cCCCeEEE
Confidence            5543344444433  4555544332211       1223567899999998875421    11         02334444


Q ss_pred             EecC-eeEecCChHHHHHHHHH
Q 022113          153 VLPG-FWMDIGQPRDYITGLRL  173 (302)
Q Consensus       153 ~~~g-~~~digt~~~~~~a~~~  173 (302)
                      ..+. ..+||++++|+..|...
T Consensus       201 ~i~~~~~~dIdt~eDl~~ae~i  222 (225)
T d1eyra_         201 IMSHQDSIDIDTELDLQQAENI  222 (225)
T ss_dssp             ECCTTTTCCCCSHHHHHHHHHH
T ss_pred             EcCccceECCCCHHHHHHHHHH
Confidence            4432 35799999999888654

>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.36  E-value=1  Score=34.32  Aligned_cols=146  Identities=10%  Similarity=0.041  Sum_probs=75.8

Q ss_pred             CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113           13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV   90 (302)
Q Consensus        13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~   90 (302)
                      ...+.+.....  +...++..++..+.....+.++++.||. +.+.+ +.++++.+.+....  +...+..+    .+..
T Consensus        69 ~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~~~v~~~~~d~p~~~~~~i~~li~~~~~~~~~--~~~~~~~d----~~~~  140 (221)
T d1vpaa_          69 EKVLGIVEGGD--TRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGAA--TLALKNSD----ALVR  140 (221)
T ss_dssp             TTEEEEEECCS--SHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSEE--EEEEECCS----EEEE
T ss_pred             ccccccccccc--cccchHHHHHHHHHhcCCCcEEEeccccccccHHHHHhhhhhhcccccc--cccccccc----eeEe
Confidence            44555555432  3456666666665443346788899998 44444 77888887665432  22332222    2333


Q ss_pred             EeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHHHH
Q 022113           91 MEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYIT  169 (302)
Q Consensus        91 ~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~  169 (302)
                      .+  +++... .  |+.  ..+...+-+.|..+.+.........+ .+....+.. ..++....-+...+.|++|+|+..
T Consensus       141 ~~--~~~~~~-~--~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~-tD~~~l~~~~g~~v~~i~g~~~n~kI~t~eDl~~  212 (221)
T d1vpaa_         141 VE--NDRIEY-I--PRK--GVYRILTPQAFSYEILKKAHENGGEW-ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLEL  212 (221)
T ss_dssp             EE--TTEEEE-E--CCT--TEEEEEEEEEEEHHHHHHHHTTCCCC-SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHH
T ss_pred             ec--Ccccee-c--chH--HHHHhhhhhhhhHHHHHHHHHhCCCC-ccHHHHHHHcCCceEEEecChhhcCCCCHHHHHH
Confidence            33  222222 1  211  23455666777777665443333233 222233333 345554433333456899999877


Q ss_pred             HHHHH
Q 022113          170 GLRLY  174 (302)
Q Consensus       170 a~~~~  174 (302)
                      |...+
T Consensus       213 Ae~ll  217 (221)
T d1vpaa_         213 ARIIA  217 (221)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76544

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=93.11  E-value=0.81  Score=35.11  Aligned_cols=158  Identities=10%  Similarity=0.112  Sum_probs=79.7

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHHHHcCCcEEEEEEeC
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKV   80 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~~~~~~~~~l~~~~~   80 (302)
                      +++.++....+.++.+...+.  .+.++++.++..+..+ .+.+++..||. +.+. .+.++++.+.+.+.  .+...+.
T Consensus        61 ~~~~~~~~~~~~~~~~~~gg~--~r~~sv~~~l~~~~~~-~~~Vli~d~~~P~i~~~~i~~l~~~~~~~~~--~i~~~~~  135 (226)
T d1w77a1          61 DIFEEYEESIDVDLRFAIPGK--ERQDSVYSGLQEIDVN-SELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPA  135 (226)
T ss_dssp             HHHHTTTTSCSSEEEEECCCS--SHHHHHHHHHHTSCTT-CSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEEC
T ss_pred             hhhhccccccccccccccccc--hhhhhhhhhHhhhccc-cccceecccccccccHHHhhhhhhhhhccCc--eeecccc
Confidence            345555556677777766432  3467899998887543 35567778998 4444 47788887777653  3333333


Q ss_pred             CCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhh-c---cCCCCCccccchHHHHhcCcEEEEEecC
Q 022113           81 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDR-I---ELRPTSIEKEVFPKIALEGKLFAMVLPG  156 (302)
Q Consensus        81 ~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~-l---~~~~~~~~~~~~~~l~~~~~v~~~~~~g  156 (302)
                      .++..+..    . ++......+.    ...+...+-+.|+.+.+.. +   ......+..+.........++....-+.
T Consensus       136 ~d~~~~~~----~-~~~~~~~~~r----~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~TD~~~l~~~~g~~v~~v~g~~  206 (226)
T d1w77a1         136 KATIKEVN----S-DSLVVKTLDR----KTLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSY  206 (226)
T ss_dssp             CSCCCCBC----T-TSCBC----------CCEEEEEEEEECHHHHHHHHHHHHHSCCCCCC-CCTTGGGSSCCEEEECCT
T ss_pred             ccceEEEc----c-CCceeecccc----hhhhHHHHHHhHhhHHHHHHHHHHHhcCCCcCcHHHHHHHCCCceEEEECCh
Confidence            33322111    1 2222111111    1223445678888766532 2   1112222111101111234554332222


Q ss_pred             eeEecCChHHHHHHHHHH
Q 022113          157 FWMDIGQPRDYITGLRLY  174 (302)
Q Consensus       157 ~~~digt~~~~~~a~~~~  174 (302)
                      .-+.|++|+|+..|...+
T Consensus       207 ~n~KItt~eDl~~ae~lL  224 (226)
T d1w77a1         207 TNIKVTTPDDLLLAERIL  224 (226)
T ss_dssp             TCCCCCSHHHHHHHHHHH
T ss_pred             hhcCcCCHHHHHHHHHHh
Confidence            224589999999887654

>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-glucose pyrophosphorylase 2 (UDPGP 2)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.84  E-value=0.36  Score=40.70  Aligned_cols=126  Identities=15%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             hhHHHHHhhcCCcEEEEEecC------------------------CCCCChHHHHHc-----HhhhccCCCCcEEEEeCC
Q 022113            2 LNFLKEFEAKLGIKIICSQET------------------------EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSD   52 (302)
Q Consensus         2 ~~~~~~~~~~~g~~i~~~~~~------------------------~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD   52 (302)
                      .+|+.+ ...+|+++.++.|.                        .|.|.|+.....     ++.+....-+.+.+.+.|
T Consensus       139 ~~~l~~-~~~fg~~i~~f~Q~~~P~~~~~~~~~~~~~~~~~~~~~~P~GhGdi~~aL~~sG~Ld~l~~~Gieyi~v~~vD  217 (378)
T d2icya2         139 HKIVEK-YTNSNVDIHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSD  217 (378)
T ss_dssp             HHHHGG-GTTSSSCEEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETT
T ss_pred             HHHHHH-hccCCCceEEEEecccccccCCcccccccccCCCcceeecCCChhhhHHHHhcChHHHHHhcCCEEEEEEccC
Confidence            345555 33468888888762                        167888866543     334433334788889999


Q ss_pred             eecCcCHHHHHHHHHHcCCcEEEEEEeCCCCC-CcceEEEeCCCCcEEEEEecCCCC--------CCCeEEEEEEEeCHh
Q 022113           53 VISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-KYGVVVMEESTGKVEKFVEKPKLF--------VGNKINAGIYLLNPA  123 (302)
Q Consensus        53 ~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~v~~d~~~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~  123 (302)
                      .+....-..++..|.+++.++++-+++...+. +-|.+...+..-+++++.|.|...        .-.+.+++.++|+-.
T Consensus       218 Nl~a~~Dp~~lG~~~~~~~~~~~kvv~Kt~~dek~G~l~~~dg~~~vvEyse~p~e~~~~~~~~~~~~~~N~nn~~~~l~  297 (378)
T d2icya2         218 NLGAIVDLTILKHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLK  297 (378)
T ss_dssp             BTTCCCCHHHHHHHHHHTCSEEEEEEECCTTCCSSCEEEEETTEEEEECGGGSCGGGHHHHHSSSSCCEEEEEEEEEEHH
T ss_pred             CcccccchHHHHHHHhcCCcceeEEEecCCCCCceeEEEEECCceeeeehhcCChhHHhhhcCCcCcceeeeeeeeeeHH
Confidence            97655446788889888999998888765443 334443321123455555555431        123579999999998


Q ss_pred             hHhhc
Q 022113          124 VLDRI  128 (302)
Q Consensus       124 ~l~~l  128 (302)
                      +++.+
T Consensus       298 ~l~~~  302 (378)
T d2icya2         298 AIKKL  302 (378)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=88.06  E-value=2.3  Score=32.33  Aligned_cols=134  Identities=13%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             ChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEec
Q 022113           27 TAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEK  104 (302)
Q Consensus        27 t~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ek  104 (302)
                      +..++..+.........+.+++..+|. +.+.+ +.++++.+.......++ ..+..+    .....+  ++.+....++
T Consensus        85 ~~~~l~~~~~~~~~~~~~~v~~~~~~~P~i~~~~i~~~i~~~~~~~~~~i~-~~~~~~----~~~~~~--~~~i~~~~~r  157 (226)
T d1vgwa_          85 VRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGGIL-AVPVAD----TLKRAE--SGQISATVDR  157 (226)
T ss_dssp             HHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCEEE-EEECCS----CEEEES--SSBEEEEECC
T ss_pred             hhHHHHHHHHhcccccccceeecccccccCcHHHHHHHHhhhcccccceee-cccccc----cceecc--CCeEEeccch
Confidence            334444444332222224556678886 55544 78888888776655443 333322    333333  5677666555


Q ss_pred             CCCCCCCeEEEEEEEeCHhhH-hhccCC-CCCccccchHHHH-hcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113          105 PKLFVGNKINAGIYLLNPAVL-DRIELR-PTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRDYITGLR  172 (302)
Q Consensus       105 p~~~~~~~~~~Giy~~~~~~l-~~l~~~-~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~~~~a~~  172 (302)
                      +..   ... ..-..|..+.+ +.+... ...+ .+....+. ...++..+.-+...+.|+||+|+..|..
T Consensus       158 ~~~---~~~-~~p~~f~~~~l~~~~~~~~~~~~-tD~~~l~~~~g~~v~~v~g~~~nikItt~eDl~~ae~  223 (226)
T d1vgwa_         158 SGL---WQA-QTPQLFQAGLLHRALAAENLGGI-TDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRL  223 (226)
T ss_dssp             TTE---EEE-EEEEEEEHHHHHHHHHC----CC-CSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHH
T ss_pred             HHH---HHH-HhhhcccHHHHHHHHHHhhcCCC-CcHHHHHHHcCCceEEEECCccccCcCCHHHHHHHHH
Confidence            422   111 12345554444 333221 1122 11111122 2345554433333467999999887754

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.85  E-value=1.2  Score=36.02  Aligned_cols=69  Identities=9%  Similarity=0.021  Sum_probs=52.1

Q ss_pred             hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEE
Q 022113            3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS   74 (302)
Q Consensus         3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~   74 (302)
                      +.+.++.+....++.++..++..|.+.|.-.+......   +-++++.+|.+...+ +..+++.+.+....+.
T Consensus        71 ~~l~~~~~~~~~~i~vi~~~~n~G~~~a~N~Gi~~a~g---d~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v  140 (328)
T d1xhba2          71 RPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRG---QVITFLDAHCECTAGWLEPLLARIKHDRRTVV  140 (328)
T ss_dssp             HHHHHHHHSSSSCEEEEECSSCCCHHHHHHHHHHHCCS---SEEEEEESSEEECTTCHHHHHHHHHHCTTEEE
T ss_pred             HHHHHHHHhcCCCeEEEEecccccchHHHHHHHHhhhc---ceeeecCcccccChhHHHHHHHHHhcCCCeEE
Confidence            34556566677788888877788999999888887643   677779999977666 8888888877665443

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=2.3  Score=32.05  Aligned_cols=146  Identities=10%  Similarity=0.047  Sum_probs=70.9

Q ss_pred             EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113           15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME   92 (302)
Q Consensus        15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d   92 (302)
                      .+.+..+.  .++.++++.+...+.+  .+.+++..+|. +.+.+ +.++.+..... ....+...+..++..+    ..
T Consensus        71 ~v~~~~~~--~~~~~sv~~~~~~~~~--~~~vl~~~~~~p~i~~~~~~~~~~~~~~~-~~~~v~~~~~~d~~~~----~~  141 (225)
T d1i52a_          71 QITVVDGG--DERADSVLAGLKAAGD--AQWVLVHDAARPCLHQDDLARLLALSETS-RTGGILAAPVRDTMKR----AE  141 (225)
T ss_dssp             TEEEEECC--SSHHHHHHHHHHTSTT--CSEEEECCTTCTTCCHHHHHHHHGGGGTC-SSCEEEEEECCSCEEE----EC
T ss_pred             ccccccCC--cchhHHHHhhhcccCc--cceeeeeccCCCCCCHHHHHHHHhhhhhc-ccccccccceeeccch----hc
Confidence            34444443  3567899999998864  24556667876 44433 55565555443 4445555555443221    11


Q ss_pred             CCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhH-hhcc---CCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHH
Q 022113           93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL-DRIE---LRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDY  167 (302)
Q Consensus        93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l-~~l~---~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~  167 (302)
                      ...+......++..    .....+.+.|..+.+ +.+.   .....+ .+....+.. ..++..+.-+-.-..|++|+|+
T Consensus       142 ~~~~~~~~~~~~~~----~~~~~~~~~f~~~~l~~~~~~~~~~~~~~-tD~~~l~~~~g~~v~~v~~~~~nikItt~eDl  216 (225)
T d1i52a_         142 PGKNAIAHTVDRNG----LWHALTPQFFPRELLHDCLTRALNEGATI-TDEASALEYCGFHPQLVEGRADNIKVTRPEDL  216 (225)
T ss_dssp             TTSSSEEEEECCTT----CEEEEEEEEEEHHHHHHHHHHHHHTTCCC-CSHHHHHHHTTCCCEEEECCTTCCCCCSHHHH
T ss_pred             ccccccccccchHH----HHHHhhhhhhhhHHHHHHHHHHHhcCCCC-CcHHHHHHHCCCceEEEecCccccCcCCHHHH
Confidence            11333333333221    122335556665544 3332   112222 222222322 3455443322122458999999


Q ss_pred             HHHHHHH
Q 022113          168 ITGLRLY  174 (302)
Q Consensus       168 ~~a~~~~  174 (302)
                      ..|+..+
T Consensus       217 ~~Ae~~l  223 (225)
T d1i52a_         217 ALAEFYL  223 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8886543