Citrus Sinensis ID: 022116

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300--
MMGQQVKPDPAFENGWPDLGKIVAPAAGYGFGPGFEASYAISRTSSSPPAVVPEAVDVKGKVSVAALNEKVSAAVGRESFKKRKADKVQNTKASEVQKHDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPSQQFTGTLEASNLKMEM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccHHHHcHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccEEccccccccccccccccccEEEc
mmgqqvkpdpafengwpdlgkivapaagygfgpgfeasyaisrtsssppavvpeavdvKGKVSVAALNEKVSAAVGREsfkkrkadkvqntkasevqkhdYIHVrarrgqatdshsLAERVRREKISERMKYLQDLvpgcnkitgkagMLDEIINYVQSLQRQVEFLSMKLAavnprldfnvdnlfakeafpvcpsnfptigmssemthpaaylHQFNSLQQQAvscsgldlgiinpsemglrrtisapvsapetfidsscyphlqpssnwdsdlqnfynvasfpsqqftgtleasnlkmem
mmgqqvkpdpafenGWPDLGKIVAPAAGYGFGPGFEASYAISRTSSSPPAVVPEAVDVKGKVSVAALNEkvsaavgresfkkrkadkvqntkasevqkhdyihvrarrgqatdshslaervrREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPSQqftgtleasnlkmem
MMGQQVKPDPAFENGWPDLGKIVapaagygfgpgfeaSYAISRTSSSPPAVVPEAVDVKGKVSVAALNEKVSAAVGRESFKKRKADKVQNTKASEVQKHDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPSQQFTGTLEASNLKMEM
*************NGWPDLGKIVAPAAGYGFGPGFEASYAI****************************************************************************************MKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQ***NWDSDLQNFYNVASF******************
****************************************************************************************************************************KISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAV***************************************************************************************************************************LKMEM
MMGQQVKPDPAFENGWPDLGKIVAPAAGYGFGPGFEASYAIS*********VPEAVDVKGKVSVAALNEKVSAAVGRES**************SEVQKHDYIHVRA************ERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPSQQFTGTLEASNLKMEM
*****VKPDPAFENGWPDLGKIVAPA***********************************************************************KHDYIHVRARRGQ*T*SHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPS*QFTGT**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMGQQVKPDPAFENGWPDLGKIVAPAAGYGFGPGFEASYAISRTSSSPPAVVPEAVDVKGKVSVAALNEKVSAAVGRESFKKRKADKVQNTKASEVQKHDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYNVASFPSQQFTGTLEASNLKMEM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query302 2.2.26 [Sep-21-2011]
Q8GY61335 Transcription factor bHLH yes no 0.539 0.486 0.557 1e-48
Q9CAA9486 Transcription factor bHLH no no 0.592 0.368 0.512 7e-46
Q9ZPW3337 Transcription factor bHLH no no 0.764 0.685 0.425 2e-44
Q9SRT2456 Transcription factor bHLH no no 0.364 0.241 0.765 2e-43
Q9C670390 Transcription factor bHLH no no 0.572 0.443 0.531 5e-42
Q6NKN9366 Transcription factor bHLH no no 0.503 0.415 0.559 2e-41
Q9FJL4498 Transcription factor bHLH no no 0.347 0.210 0.794 3e-41
Q93VJ4304 Transcription factor BEE no no 0.526 0.523 0.541 6e-41
Q9LK48371 Transcription factor bHLH no no 0.453 0.369 0.538 4e-40
Q8VZ02327 Transcription factor bHLH no no 0.344 0.318 0.673 2e-35
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1 Back     alignment and function desciption
 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/190 (55%), Positives = 124/190 (65%), Gaps = 27/190 (14%)

Query: 95  EVQKHDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEII 154
           E++K DYIHVRARRGQATDSHS+AERVRREKISERMK+LQDLVPGC+KITGKAGMLDEII
Sbjct: 163 ELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEII 222

Query: 155 NYVQSLQRQVEFLSMKLAAVNPRLDFNVDNLFAKEA----FPVCPS-NFPTIGMSSEMTH 209
           NYVQSLQRQ+EFLSMKLA VNPR DF++D++FAKE       V PS      G S EM H
Sbjct: 223 NYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVASTPMTVVPSPEMVLSGYSHEMVH 282

Query: 210 PAAYLHQFNSLQQQAVSCSGLDLGIINPSEMGLRRTISAPVSAPETFIDSSCYPHLQPSS 269
                   NS             G ++ + M    T S P+         SC+ + +  S
Sbjct: 283 SGYSSEMVNS-------------GYLHVNPMQQVNTSSDPL---------SCFNNGEAPS 320

Query: 270 NWDSDLQNFY 279
            WDS +QN Y
Sbjct: 321 MWDSHVQNLY 330

Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3 Back     alignment and function description
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1 Back     alignment and function description
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1 Back     alignment and function description
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1 Back     alignment and function description
>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZ02|BH048_ARATH Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
225428454 456 PREDICTED: transcription factor bHLH63-l 0.980 0.649 0.532 4e-93
255543699 444 conserved hypothetical protein [Ricinus 0.966 0.657 0.553 3e-92
224105381 439 predicted protein [Populus trichocarpa] 0.695 0.478 0.768 5e-92
297744394345 unnamed protein product [Vitis vinifera] 0.685 0.6 0.742 2e-87
449533331 456 PREDICTED: transcription factor bHLH63-l 0.701 0.464 0.728 2e-85
356508360398 PREDICTED: transcription factor bHLH63-l 0.834 0.633 0.546 6e-82
357473295344 BHLH transcription factor [Medicago trun 0.910 0.799 0.582 5e-81
388504626397 unknown [Medicago truncatula] 0.698 0.531 0.697 1e-80
449461645 523 PREDICTED: transcription factor bHLH63-l 0.668 0.386 0.730 2e-80
356517054384 PREDICTED: transcription factor bHLH63-l 0.824 0.648 0.545 2e-79
>gi|225428454|ref|XP_002284113.1| PREDICTED: transcription factor bHLH63-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 199/374 (53%), Positives = 236/374 (63%), Gaps = 78/374 (20%)

Query: 1   MMGQQVKPDPAFENGWPDLGKIVAPAAGY-----GF-------GPGFEASYAISRTSSSP 48
           ++G+ VK DP  EN WP+ GK+  P  G+     GF         GFE ++  SRTSS P
Sbjct: 89  LLGRAVKADPGLENVWPEFGKLTMPGTGFNVENAGFESAGILNCSGFEMNHTTSRTSSCP 148

Query: 49  PA---------VVPEAV-DVKGKVSVAALN-EKVSA--AVGRESFKKRKAD--------- 86
            A         V+PE +    G+ S      +KV +   V  E  K ++           
Sbjct: 149 LAAAEAKVRESVLPEKIASAVGRESFKKRKADKVQSPKVVAEEETKDKRIKGCAEDGESK 208

Query: 87  ------------------------------KVQNTKASEVQKHDYIHVRARRGQATDSHS 116
                                             +K SEVQK DYIHVRARRGQATDSHS
Sbjct: 209 ITEANNNKNSTTTTTTTATTTTTNNNNRETSADTSKVSEVQKPDYIHVRARRGQATDSHS 268

Query: 117 LAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNP 176
           LAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNP
Sbjct: 269 LAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNP 328

Query: 177 RLDFNVDNLFAKEAFPVCPSNFPTIGMSSEMTHPAAYLHQFNSLQQQAVSCSGLDLGIIN 236
           RLDFN+DN  AKE FP C +NFPTIGMSSEMT+P +YLH ++ +QQ  V+  G+++G IN
Sbjct: 329 RLDFNIDNFLAKEVFPACAANFPTIGMSSEMTNP-SYLH-YDPIQQ--VATCGVEMG-IN 383

Query: 237 PSEMGLRRTISAPVSAPETFIDSSCYPHLQPSSNWDSDLQNFYN-------VASFPSQ-Q 288
           P+E+ LRRTISAPVS P+TF+D SC+  +QPSS WD+DLQN Y        + SFPSQ  
Sbjct: 384 PAEIALRRTISAPVSIPDTFLD-SCFTQIQPSSTWDADLQNLYGPEFHQGRLMSFPSQAA 442

Query: 289 FTGTLEASNLKMEM 302
           FTG ++ASNLKMEM
Sbjct: 443 FTGPIDASNLKMEM 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543699|ref|XP_002512912.1| conserved hypothetical protein [Ricinus communis] gi|223547923|gb|EEF49415.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224105381|ref|XP_002313791.1| predicted protein [Populus trichocarpa] gi|222850199|gb|EEE87746.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297744394|emb|CBI37656.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449533331|ref|XP_004173629.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356508360|ref|XP_003522925.1| PREDICTED: transcription factor bHLH63-like [Glycine max] Back     alignment and taxonomy information
>gi|357473295|ref|XP_003606932.1| BHLH transcription factor [Medicago truncatula] gi|355507987|gb|AES89129.1| BHLH transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|388504626|gb|AFK40379.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461645|ref|XP_004148552.1| PREDICTED: transcription factor bHLH63-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517054|ref|XP_003527205.1| PREDICTED: transcription factor bHLH63-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query302
TAIR|locus:2139484335 CIB1 "AT4G34530" [Arabidopsis 0.609 0.549 0.529 1.8e-46
UNIPROTKB|Q69JJ6428 OSJNBa0026C08.22 "TA1 protein- 0.695 0.490 0.506 3.5e-43
UNIPROTKB|Q6Z2G7361 P0680A05.9 "Putative bHLH tran 0.678 0.567 0.488 5.7e-43
UNIPROTKB|Q5N802481 P0004D12.24 "BHLH transcriptio 0.701 0.440 0.489 1.2e-42
UNIPROTKB|Q84QW1405 OJ1191_A10.109 "BHLH transcrip 0.705 0.525 0.480 1.5e-42
TAIR|locus:2205420486 AT1G68920 [Arabidopsis thalian 0.536 0.333 0.575 2.2e-41
TAIR|locus:2201906366 AT1G10120 "AT1G10120" [Arabido 0.503 0.415 0.559 5.2e-41
UNIPROTKB|Q5VR96437 P0038C05.31-1 "Os06g0275600 pr 0.615 0.425 0.492 1.6e-40
TAIR|locus:2028804390 CIB5 "AT1G26260" [Arabidopsis 0.579 0.448 0.533 8.7e-40
TAIR|locus:2079676456 AT3G07340 "AT3G07340" [Arabido 0.572 0.379 0.552 1.1e-39
TAIR|locus:2139484 CIB1 "AT4G34530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 450 (163.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 109/206 (52%), Positives = 135/206 (65%)

Query:    51 VVPEAVDVKGKVSVAALNEKVSAAVGRESFKKRKADKVQNTKAS----EVQKHDYIHVRA 106
             +V E  + K K++    N   + ++ +   K +K +   +  +S    E++K DYIHVRA
Sbjct:   117 LVEEGEEEKSKITEQ--NNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRA 174

Query:   107 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 166
             RRGQATDSHS+AERVRREKISERMK+LQDLVPGC+KITGKAGMLDEIINYVQSLQRQ+EF
Sbjct:   175 RRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEF 234

Query:   167 LSMKLAAVNPRLDFNVDNLFAKEA----FPVCPSNFPTI-GMSSEMTHP--------AAY 213
             LSMKLA VNPR DF++D++FAKE       V PS    + G S EM H         + Y
Sbjct:   235 LSMKLAIVNPRPDFDMDDIFAKEVASTPMTVVPSPEMVLSGYSHEMVHSGYSSEMVNSGY 294

Query:   214 LHQFNSLQQQAVSCSGLDLGIINPSE 239
             LH  N +QQ  V+ S   L   N  E
Sbjct:   295 LH-VNPMQQ--VNTSSDPLSCFNNGE 317
GO:0003677 "DNA binding" evidence=ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0006351 "transcription, DNA-dependent" evidence=IDA
GO:0009911 "positive regulation of flower development" evidence=IMP
UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2G7 P0680A05.9 "Putative bHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036369001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (392 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
smart0035353 smart00353, HLH, helix loop helix domain 1e-11
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 2e-10
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 2e-08
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information 
 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 116 SLAERVRREKISERMKYLQDLVPGCNKITG--KAGMLDEIINYVQSLQRQVE 165
           +  ER RR KI+E    L+ L+P   K     KA +L   I Y++SLQ +++
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 302
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.41
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.34
smart0035353 HLH helix loop helix domain. 99.34
KOG1318411 consensus Helix loop helix transcription factor EB 99.34
KOG4304250 consensus Transcriptional repressors of the hairy/ 98.9
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.86
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 98.44
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 98.08
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.04
PLN0321793 transcription factor ATBS1; Provisional 97.5
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.3
KOG0561 373 consensus bHLH transcription factor [Transcription 97.14
KOG4029228 consensus Transcription factor HAND2/Transcription 96.96
KOG3910632 consensus Helix loop helix transcription factor [T 96.65
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 91.45
KOG4447173 consensus Transcription factor TWIST [Transcriptio 89.33
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 87.43
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 84.94
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information 
Probab=99.41  E-value=1.9e-13  Score=98.91  Aligned_cols=54  Identities=35%  Similarity=0.629  Sum_probs=49.1

Q ss_pred             cCcCCcHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCccchhHHHHHHHHHHHHHHH
Q 022116          111 ATDSHSLAERVRREKISERMKYLQDLVPGC---NKITGKAGMLDEIINYVQSLQRQVE  165 (302)
Q Consensus       111 a~~~H~~~ERrRR~kIne~~~~L~~LVP~~---~K~~dKasIL~eaI~YIk~Lq~qvq  165 (302)
                      .+..|+..||+||++||+.|..|+++||.+   .+ .+|++||..||+||+.|+.+++
T Consensus         4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k-~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKK-LSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHhC
Confidence            356799999999999999999999999998   55 4999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query302
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 6e-20
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 2e-10
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-08
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 3e-07
1a0a_A63 BHLH, protein (phosphate system positive regulator 5e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 81.3 bits (201), Expect = 6e-20
 Identities = 18/73 (24%), Positives = 38/73 (52%)

Query: 107 RRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEF 166
            RG+   +H+  E+  R  I++++  L+DLV G      K+ +L + I+Y++ LQ   + 
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 167 LSMKLAAVNPRLD 179
           L  +  ++   + 
Sbjct: 62  LKQENLSLRTAVH 74
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
4ati_A118 MITF, microphthalmia-associated transcription fact 99.67
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.66
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.59
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.59
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.58
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.55
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.5
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.49
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.44
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.39
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.32
4f3l_A 361 Mclock, circadian locomoter output cycles protein 99.04
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.01
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.94
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.94
4ath_A83 MITF, microphthalmia-associated transcription fact 98.83
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.41
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.82
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
Probab=99.67  E-value=5.7e-17  Score=134.42  Aligned_cols=83  Identities=33%  Similarity=0.452  Sum_probs=50.7

Q ss_pred             hhhhcccccCcCCcHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCccchhHHHHHHHHHHHHHHHHHHhh------Hhh
Q 022116          103 HVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNK---ITGKAGMLDEIINYVQSLQRQVEFLSMK------LAA  173 (302)
Q Consensus       103 ~~r~rr~~a~~~H~~~ERrRR~kIne~~~~L~~LVP~~~K---~~dKasIL~eaI~YIk~Lq~qvq~Le~~------~~~  173 (302)
                      +..+++++++.+|+++||+||++||++|.+|++|||+|.+   ..+|++||++||+||++||++++.|+..      +..
T Consensus        19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~   98 (118)
T 4ati_A           19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEH   98 (118)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788999999999999999999999999999853   2389999999999999999999999753      333


Q ss_pred             cCCCcccCcccc
Q 022116          174 VNPRLDFNVDNL  185 (302)
Q Consensus       174 ~~p~~~~~~~~l  185 (302)
                      .+-.+...+++|
T Consensus        99 ~n~~L~~riqeL  110 (118)
T 4ati_A           99 ANRHLLLRVQEL  110 (118)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            344444445444
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 302
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 3e-17
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 8e-17
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 2e-15
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 2e-13
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-13
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 7e-13
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 2e-12
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 6e-12
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (177), Expect = 3e-17
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 123 REKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFN 181
           R  I++++  L+DLV G +    K+G+L + I+Y++ LQ+    L  +   +      N
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKN 59
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query302
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.58
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.51
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.48
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.44
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.44
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.43
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.3e-16  Score=119.30  Aligned_cols=63  Identities=25%  Similarity=0.391  Sum_probs=57.1

Q ss_pred             CcCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhHhhc
Q 022116          112 TDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAV  174 (302)
Q Consensus       112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~~  174 (302)
                      +..|+.+||+||++||+.|..|++|||++....+|++||.+||+||+.|+++++.|.+++..+
T Consensus         7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456999999999999999999999999986445999999999999999999999999877654
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure